Extract Name	Hybridization Name	Data File	Comment [TCGA Archive Name]	Comment [TCGA Data Level]	Comment [TCGA Include for Analysis]	Protocol REF	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
TCGA-FF-8042-10A-01D-2209-01	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_G07_1039412	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_G07_1039412.nocnv_hg18.seg.txt	broad.mit.edu_DLBC.Genome_Wide_SNP_6.Level_3.212.2003.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:29	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg_2012102400	DLBC-Normal.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_DLBC-Normal.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg.Level_3.2012102400.1.0	yes
TCGA-FF-8041-10A-01D-2209-01	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_F07_1039408	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_F07_1039408.nocnv_hg18.seg.txt	broad.mit.edu_DLBC.Genome_Wide_SNP_6.Level_3.212.2003.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:29	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg_2012102400	DLBC-Normal.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_DLBC-Normal.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg.Level_3.2012102400.1.0	yes
TCGA-FF-8062-10A-01D-2209-01	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_G02_1039416	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_G02_1039416.nocnv_hg18.seg.txt	broad.mit.edu_DLBC.Genome_Wide_SNP_6.Level_3.212.2003.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:29	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg_2012102400	DLBC-Normal.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_DLBC-Normal.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg.Level_3.2012102400.1.0	yes
TCGA-FF-8046-10A-01D-2209-01	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_G09_1039498	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_G09_1039498.nocnv_hg18.seg.txt	broad.mit.edu_DLBC.Genome_Wide_SNP_6.Level_3.212.2003.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:29	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg_2012102400	DLBC-Normal.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_DLBC-Normal.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg.Level_3.2012102400.1.0	yes
TCGA-GS-6633-10B-01D-1782-01	GLYPH_p_TCGA_135_141_166_SNP_N_GenomeWideSNP_6_A08_902822	GLYPH_p_TCGA_135_141_166_SNP_N_GenomeWideSNP_6_A08_902822.nocnv_hg18.seg.txt	broad.mit.edu_DLBC.Genome_Wide_SNP_6.Level_3.135.2002.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:29	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg_2012102400	DLBC-Normal.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_DLBC-Normal.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg.Level_3.2012102400.1.0	yes
TCGA-GR-7351-10A-01D-2209-01	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_B08_1039482	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_B08_1039482.nocnv_hg18.seg.txt	broad.mit.edu_DLBC.Genome_Wide_SNP_6.Level_3.212.2003.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:29	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg_2012102400	DLBC-Normal.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_DLBC-Normal.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg.Level_3.2012102400.1.0	yes
TCGA-G8-6326-10A-01D-2209-01	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_F02_1039532	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_F02_1039532.nocnv_hg18.seg.txt	broad.mit.edu_DLBC.Genome_Wide_SNP_6.Level_3.212.2003.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:29	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg_2012102400	DLBC-Normal.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_DLBC-Normal.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg.Level_3.2012102400.1.0	yes
TCGA-FM-8000-10A-01D-2209-01	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_A11_1039474	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_A11_1039474.nocnv_hg18.seg.txt	broad.mit.edu_DLBC.Genome_Wide_SNP_6.Level_3.212.2003.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:29	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg_2012102400	DLBC-Normal.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_DLBC-Normal.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg.Level_3.2012102400.1.0	yes
TCGA-GR-7353-10A-01D-2209-01	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_B10_1039494	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_B10_1039494.nocnv_hg18.seg.txt	broad.mit.edu_DLBC.Genome_Wide_SNP_6.Level_3.212.2003.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:29	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg_2012102400	DLBC-Normal.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_DLBC-Normal.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg.Level_3.2012102400.1.0	yes
TCGA-G8-6324-10A-01D-2209-01	XYLEM_p_TCGASNP_207_212_N_GenomeWideSNP_6_A04_1051224	XYLEM_p_TCGASNP_207_212_N_GenomeWideSNP_6_A04_1051224.nocnv_hg18.seg.txt	broad.mit.edu_DLBC.Genome_Wide_SNP_6.Level_3.212.2003.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:29	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg_2012102400	DLBC-Normal.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_DLBC-Normal.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg.Level_3.2012102400.1.0	yes
TCGA-GS-6634-10B-01D-1782-01	GLYPH_p_TCGA_135_141_166_SNP_N_GenomeWideSNP_6_A09_902760	GLYPH_p_TCGA_135_141_166_SNP_N_GenomeWideSNP_6_A09_902760.nocnv_hg18.seg.txt	broad.mit.edu_DLBC.Genome_Wide_SNP_6.Level_3.135.2002.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:29	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg_2012102400	DLBC-Normal.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_DLBC-Normal.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg.Level_3.2012102400.1.0	yes
TCGA-G8-6325-10A-01D-2209-01	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_C01_1039484	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_C01_1039484.nocnv_hg18.seg.txt	broad.mit.edu_DLBC.Genome_Wide_SNP_6.Level_3.212.2003.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:29	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg_2012102400	DLBC-Normal.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_DLBC-Normal.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg.Level_3.2012102400.1.0	yes
TCGA-FF-8043-10A-01D-2209-01	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_E10_1039404	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_E10_1039404.nocnv_hg18.seg.txt	broad.mit.edu_DLBC.Genome_Wide_SNP_6.Level_3.212.2003.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:29	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg_2012102400	DLBC-Normal.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_DLBC-Normal.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg.Level_3.2012102400.1.0	yes
TCGA-FF-8047-10A-01D-2209-01	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_G05_1039486	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_G05_1039486.nocnv_hg18.seg.txt	broad.mit.edu_DLBC.Genome_Wide_SNP_6.Level_3.212.2003.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:29	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg_2012102400	DLBC-Normal.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_DLBC-Normal.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg.Level_3.2012102400.1.0	yes
TCGA-FF-8061-10A-01D-2209-01	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_F11_1039586	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_F11_1039586.nocnv_hg18.seg.txt	broad.mit.edu_DLBC.Genome_Wide_SNP_6.Level_3.212.2003.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:29	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg_2012102400	DLBC-Normal.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_DLBC-Normal.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg.Level_3.2012102400.1.0	yes
