Extract Name	Hybridization Name	Data File	Comment [TCGA Archive Name]	Comment [TCGA Data Level]	Comment [TCGA Include for Analysis]	Protocol REF	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
TCGA-G8-6324-01A-11D-2209-01	XYLEM_p_TCGASNP_207_212_N_GenomeWideSNP_6_A01_1051280	XYLEM_p_TCGASNP_207_212_N_GenomeWideSNP_6_A01_1051280.nocnv_hg19.seg.txt	broad.mit.edu_DLBC.Genome_Wide_SNP_6.Level_3.212.2003.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:28	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg_2012102400	DLBC.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_DLBC.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.Level_3.2012102400.0.0	yes
TCGA-G8-6914-01A-11D-2209-01	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_G03_1039550	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_G03_1039550.nocnv_hg19.seg.txt	broad.mit.edu_DLBC.Genome_Wide_SNP_6.Level_3.212.2003.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:28	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg_2012102400	DLBC.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_DLBC.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.Level_3.2012102400.0.0	yes
TCGA-G8-6325-01A-11D-2209-01	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_D08_1039492	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_D08_1039492.nocnv_hg19.seg.txt	broad.mit.edu_DLBC.Genome_Wide_SNP_6.Level_3.212.2003.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:28	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg_2012102400	DLBC.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_DLBC.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.Level_3.2012102400.0.0	yes
TCGA-FF-8042-01A-11D-2209-01	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_F04_1039440	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_F04_1039440.nocnv_hg19.seg.txt	broad.mit.edu_DLBC.Genome_Wide_SNP_6.Level_3.212.2003.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:28	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg_2012102400	DLBC.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_DLBC.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.Level_3.2012102400.0.0	yes
TCGA-G8-6906-01A-11D-2209-01	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_E02_1039424	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_E02_1039424.nocnv_hg19.seg.txt	broad.mit.edu_DLBC.Genome_Wide_SNP_6.Level_3.212.2003.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:28	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg_2012102400	DLBC.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_DLBC.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.Level_3.2012102400.0.0	yes
TCGA-FF-8061-01A-11D-2209-01	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_F01_1039530	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_F01_1039530.nocnv_hg19.seg.txt	broad.mit.edu_DLBC.Genome_Wide_SNP_6.Level_3.212.2003.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:28	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg_2012102400	DLBC.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_DLBC.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.Level_3.2012102400.0.0	yes
TCGA-G8-6907-01A-11D-2209-01	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_E07_1039560	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_E07_1039560.nocnv_hg19.seg.txt	broad.mit.edu_DLBC.Genome_Wide_SNP_6.Level_3.212.2003.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:28	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg_2012102400	DLBC.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_DLBC.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.Level_3.2012102400.0.0	yes
TCGA-FF-8062-01A-11D-2209-01	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_D11_1039576	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_D11_1039576.nocnv_hg19.seg.txt	broad.mit.edu_DLBC.Genome_Wide_SNP_6.Level_3.212.2003.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:28	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg_2012102400	DLBC.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_DLBC.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.Level_3.2012102400.0.0	yes
TCGA-G8-6909-01A-11D-2209-01	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_G04_1039578	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_G04_1039578.nocnv_hg19.seg.txt	broad.mit.edu_DLBC.Genome_Wide_SNP_6.Level_3.212.2003.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:28	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg_2012102400	DLBC.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_DLBC.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.Level_3.2012102400.0.0	yes
TCGA-FF-8043-01A-11D-2209-01	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_F08_1039410	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_F08_1039410.nocnv_hg19.seg.txt	broad.mit.edu_DLBC.Genome_Wide_SNP_6.Level_3.212.2003.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:28	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg_2012102400	DLBC.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_DLBC.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.Level_3.2012102400.0.0	yes
TCGA-GR-7351-01A-11D-2209-01	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_E11_1039556	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_E11_1039556.nocnv_hg19.seg.txt	broad.mit.edu_DLBC.Genome_Wide_SNP_6.Level_3.212.2003.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:28	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg_2012102400	DLBC.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_DLBC.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.Level_3.2012102400.0.0	yes
TCGA-FM-8000-01A-11D-2209-01	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_F10_1039454	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_F10_1039454.nocnv_hg19.seg.txt	broad.mit.edu_DLBC.Genome_Wide_SNP_6.Level_3.212.2003.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:28	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg_2012102400	DLBC.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_DLBC.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.Level_3.2012102400.0.0	yes
TCGA-FF-8047-01A-11D-2209-01	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_G06_1039508	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_G06_1039508.nocnv_hg19.seg.txt	broad.mit.edu_DLBC.Genome_Wide_SNP_6.Level_3.212.2003.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:28	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg_2012102400	DLBC.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_DLBC.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.Level_3.2012102400.0.0	yes
TCGA-GR-7353-01A-11D-2209-01	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_A10_1039456	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_A10_1039456.nocnv_hg19.seg.txt	broad.mit.edu_DLBC.Genome_Wide_SNP_6.Level_3.212.2003.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:28	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg_2012102400	DLBC.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_DLBC.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.Level_3.2012102400.0.0	yes
TCGA-FF-8046-01A-11D-2209-01	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_D04_1039442	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_D04_1039442.nocnv_hg19.seg.txt	broad.mit.edu_DLBC.Genome_Wide_SNP_6.Level_3.212.2003.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:28	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg_2012102400	DLBC.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_DLBC.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.Level_3.2012102400.0.0	yes
TCGA-FF-8041-01A-11D-2209-01	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_D10_1039584	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_D10_1039584.nocnv_hg19.seg.txt	broad.mit.edu_DLBC.Genome_Wide_SNP_6.Level_3.212.2003.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:28	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg_2012102400	DLBC.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_DLBC.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.Level_3.2012102400.0.0	yes
TCGA-G8-6326-01A-11D-2209-01	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_D02_1039480	CENTS_p_TCGASNP_212_216_217_N_GenomeWideSNP_6_D02_1039480.nocnv_hg19.seg.txt	broad.mit.edu_DLBC.Genome_Wide_SNP_6.Level_3.212.2003.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:28	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg_2012102400	DLBC.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_DLBC.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.Level_3.2012102400.0.0	yes
