GDAC_CreateMergeDataFilesSDRF1 samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.GBM.2012_10_24__11_21_08.samplestamp.txt |
GDAC_CreateMergeDataFilesSDRF1 annotationids | transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data |
GDAC_CreateMergeDataFilesSDRF1 datapathsfile | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergeDataFilesPipeline/GBM-Normal/2093642/GDAC_CreateMergeDataFilesSDRF1.datapathsfile.input.tsv |
GDAC_MergeDataFiles2 inputfilelist filename | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergeDataFilesPipeline/GBM-Normal/2093642/GDAC_MergeDataFiles2.inputfilelist.filename.input.tsv |
GDAC_MergeDataFiles2 output filename | GBM-Normal |
GDAC_MergeDataFiles2 row_column | column |
GDAC_MergeDataFiles2 num_headers | 1 |
GDAC_MergeDataFiles2 filetype | transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data.data |
Execution Times: | |
Submitted: | 14:18:56 04-12-12 |
Completed: | |
Elapsed: | 00 hrs 50 mins 28 secs |
step 1. GDAC_CreateMergeDataFilesSDRF [id: 241040] This module parses a samplestamp based on an input annotation id and creates an SDRF file as output.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00467:12
samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.GBM.2012_10_24__11_21_08.samplestamp.txt |
annotationids | transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data |
sdrfName | |
doNotCreateManifest | |
datapathsfile | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergeDataFilesPipeline/GBM-Normal/2093642/GDAC_CreateMergeDataFilesSDRF1.datapathsfile.input.tsv |
Output Files: | |
GBM.merger.sdrf.txt | |
dcc_archive.properties | |
.lsf.out | |
dcc_archive_manifest.tsv | |
stdout.txt |
Execution Times: | |
Submitted: | 14:20:17 04-12-12 |
Completed: | 14:42:48 04-12-12 |
Elapsed: | 00 hrs 22 mins 30 secs |
step 2. GDAC_MergeDataFiles [id: 241041] Merges row or column oriented text datatable files, validating that the headers match.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00140:3
inputfilelist filename | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergeDataFilesPipeline/GBM-Normal/2093642/GDAC_MergeDataFiles2.inputfilelist.filename.input.tsv |
output filename | GBM-Normal |
row_column | column |
num_headers | 1 |
filetype | transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data.data |
Output Files: | |
GBM-Normal.transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data.data.txt | |
.lsf.out | |
stdout.txt |
Execution Times: | |
Submitted: | 14:20:17 04-12-12 |
Completed: | 15:09:21 04-12-12 |
Elapsed: | 00 hrs 49 mins 04 secs |