Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Genome_Change	Annotation_Transcript	Transcript_Strand	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	i_TCGAscape_Amplification_Peaks	i_TCGAscape_Deletion_Peaks	DrugBank	i_ACHILLES_Top_Genes	i_CCLE_ONCOMAP_overlapping_mutations	i_CCLE_ONCOMAP_total_mutations_in_gene	i_CCLE_SEQ_overlapping_mutations	i_CCLE_SEQ_total_mutations_in_gene	MUTSIG_Significant_Genes	OREGANNO_ID	OREGANNO_Values	i_tumor_f	i_init_t_lod	i_t_lod_fstar	i_t_alt_count	i_t_ref_count	i_normal_best_gt	i_failure_reasons	i_judgement	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	dataset	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context_orig	context65	gene_name	newbase	categ	categ_ignoring_null_categ
CBARA1	10367	broad.mit.edu	36	10	73904895	73904895	+	Missense_Mutation	SNP	C	T	T			TCGA-06-2561-01	TCGA-06-2561-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr10:73904895C>T	uc001jtb.1	-	c.908G>A	c.(907-909)CGT>CAT	p.R303H	CBARA1_uc009xqo.1_Non-coding_Transcript	NM_006077	NP_006068	Q9BPX6	MICU1_HUMAN	calcium binding atopy-related autoantigen 1	301					calcium ion import|defense response|elevation of mitochondrial calcium ion concentration	integral to membrane|mitochondrial inner membrane	calcium ion binding			ovary(1)	1														0.25	11.161638	12.301557	5	15	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	73904895	73904895	2815	10	C	T	T	19	19	CBARA1	T	1	1
MTNR1B	4544	broad.mit.edu	36	11	92354934	92354934	+	Silent	SNP	C	T	T			TCGA-06-2561-01	TCGA-06-2561-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr11:92354934C>T	uc001pdk.1	+	c.897C>T	c.(895-897)TTC>TTT	p.F299F		NM_005959	NP_005950	P49286	MTR1B_HUMAN	melatonin receptor 1B	299	Helical; Name=7; (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|glucose homeostasis|regulation of insulin secretion|synaptic transmission	integral to plasma membrane	melatonin receptor activity			central_nervous_system(1)	1		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)			Ramelteon(DB00980)									0.321499	429.352099	443.698909	163	344	CC		KEEP	---	---	---	---	capture			Silent	SNP	92354934	92354934	10345	11	C	T	T	29	29	MTNR1B	T	2	2
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	T	T			TCGA-06-2561-01	TCGA-06-2561-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr12:25289551C>T	uc001rgp.1	-	c.35G>A	c.(34-36)GGT>GAT	p.G12D	KRAS_uc001rgq.1_Missense_Mutation_p.G12D|KRAS_uc001rgr.2_Non-coding_Transcript	NM_033360	NP_203524	P01116	RASK_HUMAN	c-K-ras2 protein isoform a precursor	12	GTP.		G -> D (in pancreatic carcinoma, GASC and lung carcinoma; somatic mutation).|G -> R (in lung cancer and bladder cancer; somatic mutation).|G -> S (in lung carcinoma and GASC; somatic mutation).|G -> A (in a colorectal cancer sample; somatic mutation).|G -> C (in lung carcinoma; somatic mutation).|G -> V (in lung carcinoma, pancreatic carcinoma, colon cancer and GASC; somatic mutation).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	plasma membrane	GTP binding|GTPase activity|protein binding	p.G12D(6894)|p.G12V(4601)|p.G12A(1119)|p.G12?(50)|p.G12F(33)|p.G12N(6)|p.G12L(5)|p.G12C(4)|p.G12I(3)|p.G12W(3)|p.G12E(2)|p.G12Y(2)|p.G12fs*3(1)|p.G12S(1)|p.G12_G13insG(1)		large_intestine(11742)|pancreas(3256)|lung(2694)|biliary_tract(514)|ovary(437)|endometrium(339)|haematopoietic_and_lymphoid_tissue(303)|stomach(179)|thyroid(145)|prostate(85)|soft_tissue(75)|small_intestine(62)|upper_aerodigestive_tract(59)|cervix(49)|urinary_tract(48)|skin(38)|breast(27)|liver(21)|testis(17)|oesophagus(15)|central_nervous_system(8)|peritoneum(5)|kidney(5)|salivary_gland(5)|thymus(5)|eye(4)|gastrointestinal_tract_(site_indeterminate)(4)|autonomic_ganglia(2)|bone(2)|genital_tract(1)|penis(1)|adrenal_gland(1)	20148	all_cancers(2;1e-35)|all_epithelial(2;1.97e-38)|all_lung(3;2.1e-23)|Lung NSC(3;1.16e-22)|Acute lymphoblastic leukemia(6;0.00231)|all_hematologic(7;0.00259)|Melanoma(3;0.0301)|Colorectal(261;0.11)|Ovarian(17;0.12)					Pancreas(8;6 143 191 305 2070 2426 4376 10944 11745 26467 38091 50869)	G12D(HPAC_PANCREAS)|G12V(SW403_LARGE_INTESTINE)|G12D(HPAFII_PANCREAS)|G12D(PANC0403_PANCREAS)|G12D(KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12A(KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12V(NCIH441_LUNG)|G12D(SU8686_PANCREAS)|G12D(SUIT2_PANCREAS)|G12D(PK1_PANCREAS)|G12V(KP3_PANCREAS)|G12D(PANC0813_PANCREAS)|G12A(SW1116_LARGE_INTESTINE)|G12D(LS180_LARGE_INTESTINE)|G12V(NCIH727_LUNG)|G12V(PATU8988S_PANCREAS)|G12V(CAPAN2_PANCREAS)|G12D(KP4_PANCREAS)|G12D(LS513_LARGE_INTESTINE)|G12D(SNUC2A_LARGE_INTESTINE)|G12V(SW480_LARGE_INTESTINE)|G12V(COLO668_LUNG)|G12D(COLO678_LARGE_INTESTINE)|G12V(RERFLCAD2_LUNG)|G12D(PANC0203_PANCREAS)|G12V(CFPAC1_PANCREAS)|G12V(SW900_LUNG)|G12V(LCLC97TM1_LUNG)|G12V(SW620_LARGE_INTESTINE)|G12A(MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12V(SH10TC_STOMACH)|G12V(A498_KIDNEY)|G12D(PK59_PANCREAS)|G12D(HEC1A_ENDOMETRIUM)|G12D(PANC0504_PANCREAS)|G12V(SNGM_ENDOMETRIUM)|G12A(RERFLCAD1_LUNG)|G12A(KPNSI9S_AUTONOMIC_GANGLIA)|G12D(ASPC1_PANCREAS)|G12A(RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12V(RCM1_LARGE_INTESTINE)|G12V(CORL23_LUNG)|G12D(SW1990_PANCREAS)|G12D(HEYA8_OVARY)|G12A(NCIH1573_LUNG)|G12A(NCIH2009_LUNG)|G12V(HUPT4_PANCREAS)|G12D(KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12D(HEC50B_ENDOMETRIUM)|G12V(YAPC_PANCREAS)|G12V(NCIH2444_LUNG)|G12V(HCC56_LARGE_INTESTINE)|G12D(MCAS_OVARY)|G12V(DANG_PANCREAS)|G12V(SHP77_LUNG)|G12D(AGS_STOMACH)|G12D(SKLU1_LUNG)|G12V(QGP1_PANCREAS)|G12D(L33_PANCREAS)|G12V(PANC0327_PANCREAS)|G12D(PANC1_PANCREAS)|G12V(RKN_OVARY)|G12V(PATU8902_PANCREAS)	119	p.G12D(SNU1197-Tumor)|p.G12D(HEC1A-Tumor)|p.G12D(SKLU1-Tumor)|p.G12D(GP2D-Tumor)|p.G12A(MM1S-Tumor)|p.G12D(HCC1588-Tumor)|p.G12D(SNUC2A-Tumor)|p.G12D(SNU1033-Tumor)|p.G12A(KPNSI9S-Tumor)|p.G12A(NCIH1573-Tumor)|p.G12D(KARPAS620-Tumor)|p.G12D(KP1NL-Tumor)|p.G12D(MCAS-Tumor)|p.G12D(HPAFII-Tumor)|p.G12D(PANC04.03-Tumor)|p.G12D(PANC10.05-Tumor)|p.G12D(TGBC11TKB-Tumor)|p.G12D(LS513-Tumor)|p.G12D(SW1990-Tumor)|p.G12D(SNU601-Tumor)|p.G12A(COLO775-Tumor)|p.G12D(ASPC1-Tumor)|p.G12A(SW1116-Tumor)|p.G12D(CL40-Tumor)|p.G12D(HEC1B-Tumor)|p.G12D(LS180-Tumor)|p.G12D(HEYA8-Tumor)|p.G12D(KP1N-Tumor)|p.G12D(PK1-Tumor)|p.G12D(SU.86.86-Tumor)|p.G12A(RERFLCAD1-Tumor)|p.G12D(PANC08.13-Tumor)|p.G12D(HEC50B-Tumor)|p.G12A(NCIH2009-Tumor)|p.G12D(639V-Tumor)|p.G12D(SNU410-Tumor)|p.G12D(L3.3-Tumor)|p.G12D(SNU407-Tumor)|p.G12A(KMS28BM-Tumor)|p.G12D(PK59-Tumor)|p.G12V(SH10TC-Tumor)|p.G12D(PK45H-Tumor)|p.G12D(GSU-Tumor)|p.G12D(SNU869-Tumor)|p.G12D(HUCCT1-Tumor)|p.G12D(NCIH684-Tumor)|p.G12D(KP4-Tumor)|p.G12D(PANC02.03-Tumor)|p.G12A(RPMI8226-Tumor)|p.G12V(PANC03.27-Tumor)|p.G12D(SNU1-Tumor)|p.G12D(AGS-Tumor)|p.G12D(SNU8-Tumor)|p.G12D(T3M10-Tumor)	262	TSP Lung(1;<1E-8)|Multiple Myeloma(2;<1E-6)			0.621053	183.828617	185.046517	59	36	CC		KEEP	---	---	---	---	capture	OV - Ovarian serous cystadenocarcinoma(3;1.23e-21)|Epithelial(3;1.31e-20)|all cancers(3;5.45e-18)|STAD - Stomach adenocarcinoma(2;2.68e-05)		Missense_Mutation	SNP	25289551	25289551	8753	12	C	T	T	18	18	KRAS	T	2	2
ADCY6	112	broad.mit.edu	36	12	47455412	47455412	+	Missense_Mutation	SNP	G	A	A			TCGA-06-2561-01	TCGA-06-2561-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr12:47455412G>A	uc001rsh.2	-	c.1921C>T	c.(1921-1923)CGG>TGG	p.R641W	ADCY6_uc001rsj.2_Missense_Mutation_p.R641W|ADCY6_uc001rsi.2_Missense_Mutation_p.R641W	NM_015270	NP_056085	O43306	ADCY6_HUMAN	adenylate cyclase 6 isoform a	641	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane	ATP binding|metal ion binding				0														0.292308	98.943911	103.940789	38	92	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	47455412	47455412	299	12	G	A	A	38	38	ADCY6	A	1	1
GOLGA6A	342096	broad.mit.edu	36	15	72152204	72152204	+	Missense_Mutation	SNP	A	C	C			TCGA-06-2561-01	TCGA-06-2561-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr15:72152204A>C	uc002axa.1	-	c.1433T>G	c.(1432-1434)CTA>CGA	p.L478R		NM_001038640	NP_001033729	Q9NYA3	GOG6A_HUMAN	golgi autoantigen, golgin subfamily a, 6	478	Potential.										0														0.141304	18.74237	30.140054	13	79	AA		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	72152204	72152204	6826	15	A	C	C	15	15	GOLGA6A	C	4	4
DNAH3	55567	broad.mit.edu	36	16	21053088	21053088	+	Missense_Mutation	SNP	A	G	G			TCGA-06-2561-01	TCGA-06-2561-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr16:21053088A>G	uc002did.1	-	c.1075T>C	c.(1075-1077)TTT>CTT	p.F359L	DNAH3_uc002die.1_Missense_Mutation_p.F330L	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	359	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(10)|large_intestine(2)|central_nervous_system(2)	14														0.270408	160.59279	169.908806	53	143	AA		KEEP	---	---	---	---	capture		GBM - Glioblastoma multiforme(48;0.207)	Missense_Mutation	SNP	21053088	21053088	4786	16	A	G	G	2	2	DNAH3	G	4	4
KATNB1	10300	broad.mit.edu	36	16	56344603	56344603	+	Silent	SNP	A	C	C			TCGA-06-2561-01	TCGA-06-2561-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr16:56344603A>C	uc002eml.1	+	c.969A>C	c.(967-969)GCA>GCC	p.A323A		NM_005886	NP_005877	Q9BVA0	KTNB1_HUMAN	katanin p80 subunit B 1	323	Interaction with PAFAH1B1 (By similarity).				cell division|mitosis|negative regulation of microtubule depolymerization|positive regulation of microtubule depolymerization|protein targeting	katanin complex|microtubule|spindle pole	microtubule binding|protein heterodimerization activity				0		all_neural(199;0.223)												0.259259	6.413869	8.022063	7	20	AA		KEEP	---	---	---	---	capture			Silent	SNP	56344603	56344603	8291	16	A	C	C	6	6	KATNB1	C	4	4
SPAG5	10615	broad.mit.edu	36	17	23935572	23935572	+	Missense_Mutation	SNP	G	C	C			TCGA-06-2561-01	TCGA-06-2561-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr17:23935572G>C	uc002hbq.1	-	c.2215C>G	c.(2215-2217)CTA>GTA	p.L739V		NM_006461	NP_006452	Q96R06	SPAG5_HUMAN	sperm associated antigen 5	739	Gln-rich.				cell division|mitosis|phosphatidylinositol-mediated signaling|spindle organization	condensed chromosome kinetochore|cytoplasm|spindle pole	protein binding			central_nervous_system(1)	1	Lung NSC(42;0.00431)													0.259446	297.74642	318.548872	103	294	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	23935572	23935572	15484	17	G	C	C	34	34	SPAG5	C	3	3
HNF1B	6928	broad.mit.edu	36	17	33139126	33139126	+	Missense_Mutation	SNP	G	A	A			TCGA-06-2561-01	TCGA-06-2561-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr17:33139126G>A	uc002hok.2	-	c.1250C>T	c.(1249-1251)ACG>ATG	p.T417M		NM_000458	NP_000449	P35680	HNF1B_HUMAN	transcription factor 2	417					endocrine pancreas development|genitalia development|kidney development|positive regulation of transcription, DNA-dependent	nucleus	DNA binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription activator activity			ovary(3)	3		Breast(25;0.00765)|Ovarian(249;0.15)				Colon(71;102 1179 9001 27917 43397)				411				0.313953	73.091887	75.741947	27	59	GG		KEEP	---	---	---	---	capture	STAD - Stomach adenocarcinoma(1;0.0142)		Missense_Mutation	SNP	33139126	33139126	7544	17	G	A	A	40	40	HNF1B	A	1	1
FBXL20	84961	broad.mit.edu	36	17	34684823	34684823	+	Silent	SNP	G	T	T			TCGA-06-2561-01	TCGA-06-2561-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr17:34684823G>T	uc002hrt.1	-	c.753C>A	c.(751-753)TCC>TCA	p.S251S	FBXL20_uc010cvu.1_Silent_p.S219S	NM_032875	NP_116264	Q96IG2	FXL20_HUMAN	F-box and leucine-rich repeat protein 20	251	LRR 7.					cytoplasm				ovary(1)	1														0.131579	28.488425	48.545875	20	132	GG		KEEP	---	---	---	---	capture	LUAD - Lung adenocarcinoma(14;0.146)		Silent	SNP	34684823	34684823	5954	17	G	T	T	43	43	FBXL20	T	3	3
ALOX12B	242	broad.mit.edu	36	17	7921170	7921170	+	Silent	SNP	G	A	A			TCGA-06-2561-01	TCGA-06-2561-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr17:7921170G>A	uc002gjy.1	-	c.1138C>T	c.(1138-1140)CTA>TTA	p.L380L		NM_001139	NP_001130	O75342	LX12B_HUMAN	arachidonate 12-lipoxygenase, 12R type	380	Lipoxygenase.				epidermis development|leukotriene biosynthetic process|oxidation-reduction process		arachidonate 12-lipoxygenase activity|iron ion binding|lipoxygenase activity				0											Multiple Myeloma(8;0.094)			0.5	8.226213	8.226213	3	3	GG		KEEP	---	---	---	---	capture			Silent	SNP	7921170	7921170	540	17	G	A	A	34	34	ALOX12B	A	2	2
KCNG2	26251	broad.mit.edu	36	18	75760437	75760437	+	Missense_Mutation	SNP	G	A	A			TCGA-06-2561-01	TCGA-06-2561-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr18:75760437G>A	uc002lnj.1	+	c.1034G>A	c.(1033-1035)CGC>CAC	p.R345H		NM_012283	NP_036415	Q9UJ96	KCNG2_HUMAN	potassium voltage-gated channel, subfamily G,	345					energy reserve metabolic process|regulation of heart contraction|regulation of insulin secretion	voltage-gated potassium channel complex	delayed rectifier potassium channel activity				0		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)												0.222222	9.490769	10.768208	4	14	GG		KEEP	---	---	---	---	capture		OV - Ovarian serous cystadenocarcinoma(15;6.92e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0244)	Missense_Mutation	SNP	75760437	75760437	8333	18	G	A	A	38	38	KCNG2	A	1	1
CCDC105	126402	broad.mit.edu	36	19	14993177	14993177	+	Missense_Mutation	SNP	C	T	T			TCGA-06-2561-01	TCGA-06-2561-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr19:14993177C>T	uc002nae.1	+	c.887C>T	c.(886-888)GCG>GTG	p.A296V		NM_173482	NP_775753	Q8IYK2	CC105_HUMAN	coiled-coil domain containing 105	296					microtubule cytoskeleton organization	microtubule				ovary(1)	1														0.23913	25.904477	28.761284	11	35	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	14993177	14993177	2860	19	C	T	T	27	27	CCDC105	T	1	1
ZNF208	7757	broad.mit.edu	36	19	21947332	21947332	+	Missense_Mutation	SNP	A	C	C			TCGA-06-2561-01	TCGA-06-2561-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr19:21947332A>C	uc002nqp.1	-	c.2044T>G	c.(2044-2046)TGT>GGT	p.C682G	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)	5		all_lung(12;0.0961)|Lung NSC(12;0.103)												0.286713	131.025865	136.855128	41	102	AA		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	21947332	21947332	18357	19	A	C	C	8	8	ZNF208	C	4	4
ITGB1BP3	27231	broad.mit.edu	36	19	3893189	3893189	+	Missense_Mutation	SNP	G	A	A			TCGA-06-2561-01	TCGA-06-2561-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr19:3893189G>A	uc002lyz.2	+	c.611G>A	c.(610-612)CGC>CAC	p.R204H		NM_170678	NP_733778	Q9NPI5	NRK2_HUMAN	integrin beta 1 binding protein 3	204					pyridine nucleotide biosynthetic process		ATP binding|metal ion binding|protein binding|ribosylnicotinamide kinase activity				0		Hepatocellular(1079;0.137)												0.413793	33.58634	33.747866	12	17	GG		KEEP	---	---	---	---	capture		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00463)|STAD - Stomach adenocarcinoma(1328;0.18)	Missense_Mutation	SNP	3893189	3893189	8197	19	G	A	A	38	38	ITGB1BP3	A	1	1
PUM1	9698	broad.mit.edu	36	1	31182202	31182202	+	Missense_Mutation	SNP	A	C	C			TCGA-06-2561-01	TCGA-06-2561-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr1:31182202A>C	uc001bsk.1	-	c.3418T>G	c.(3418-3420)TGC>GGC	p.C1140G	PUM1_uc001bsf.1_Missense_Mutation_p.C770G|PUM1_uc001bsg.1_Missense_Mutation_p.C836G|PUM1_uc001bsh.1_Missense_Mutation_p.C1104G|PUM1_uc001bsi.1_Missense_Mutation_p.C1102G|PUM1_uc001bsj.1_Missense_Mutation_p.C1078G|SNORD103A_uc009vts.1_Intron	NM_001020658	NP_001018494	Q14671	PUM1_HUMAN	pumilio 1 isoform 1	1102	PUM-HD.				cellular membrane organization|post-Golgi vesicle-mediated transport|regulation of translation	cytosol	RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Colorectal(325;0.0211)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|all_neural(195;0.0381)|Breast(348;0.0848)|Medulloblastoma(700;0.123)												0.273973	53.17877	56.614043	20	53	AA		KEEP	---	---	---	---	capture		STAD - Stomach adenocarcinoma(196;0.0232)|READ - Rectum adenocarcinoma(331;0.0681)	Missense_Mutation	SNP	31182202	31182202	13283	1	A	C	C	6	6	PUM1	C	4	4
LIPI	149998	broad.mit.edu	36	21	14483570	14483570	+	Missense_Mutation	SNP	T	C	C			TCGA-06-2561-01	TCGA-06-2561-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr21:14483570T>C	uc002yjm.1	-	c.151A>G	c.(151-153)AAG>GAG	p.K51E	LIPI_uc010gkw.1_5'UTR	NM_198996	NP_945347	Q6XZB0	LIPI_HUMAN	lipase, member I	30					lipid catabolic process	extracellular region|extracellular space|plasma membrane	heparin binding|phospholipase activity			ovary(2)	2														0.297561	194.79999	202.307502	61	144	TT		KEEP	---	---	---	---	capture		Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.0015)|Colorectal(24;0.00693)|Lung(58;0.166)	Missense_Mutation	SNP	14483570	14483570	9152	21	T	C	C	64	64	LIPI	C	4	4
ATF4	468	broad.mit.edu	36	22	38248368	38248368	+	Missense_Mutation	SNP	G	C	C			TCGA-06-2561-01	TCGA-06-2561-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr22:38248368G>C	uc003axz.1	+	c.871G>C	c.(871-873)GCA>CCA	p.A291P	ATF4_uc003aya.1_Missense_Mutation_p.A291P	NM_182810	NP_877962	P18848	ATF4_HUMAN	activating transcription factor 4	291	Basic motif.|				cellular amino acid metabolic process|gluconeogenesis|positive regulation of transcription from RNA polymerase II promoter|response to endoplasmic reticulum stress	cytoplasm|plasma membrane	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|specific RNA polymerase II transcription factor activity|transcription activator activity				0	Melanoma(58;0.04)													0.181818	6.585779	8.680615	4	18	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	38248368	38248368	1101	22	G	C	C	34	34	ATF4	C	3	3
TTN	7273	broad.mit.edu	36	2	179332116	179332116	+	Missense_Mutation	SNP	G	T	T			TCGA-06-2561-01	TCGA-06-2561-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr2:179332116G>T	uc002umr.1	-	c.10143C>A	c.(10141-10143)GAC>GAA	p.D3381E	TTN_uc002ums.1_Missense_Mutation_p.D3335E|TTN_uc010frc.1_Missense_Mutation_p.D3335E|TTN_uc010frd.1_Missense_Mutation_p.D3335E|TTN_uc002umz.1_Missense_Mutation_p.D42E|TTN_uc002unb.1_Missense_Mutation_p.D3381E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	4324										ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153										8722				0.258065	110.025919	118.247981	40	115	GG		KEEP	---	---	---	---	capture	OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)		Missense_Mutation	SNP	179332116	179332116	17290	2	G	T	T	48	48	TTN	T	3	3
AOX1	316	broad.mit.edu	36	2	201235872	201235872	+	Missense_Mutation	SNP	G	A	A			TCGA-06-2561-01	TCGA-06-2561-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr2:201235872G>A	uc002uvx.1	+	c.3478G>A	c.(3478-3480)GAA>AAA	p.E1160K	AOX1_uc010fsu.1_Missense_Mutation_p.E526K	NM_001159	NP_001150	Q06278	ADO_HUMAN	aldehyde oxidase 1	1160					inflammatory response|oxidation-reduction process|reactive oxygen species metabolic process	cytoplasm	2 iron, 2 sulfur cluster binding|aldehyde oxidase activity|flavin adenine dinucleotide binding|iron ion binding|NAD binding|xanthine dehydrogenase activity			ovary(4)|pancreas(1)	5					Brimonidine(DB00484)|Chlorpromazine(DB00477)|Famciclovir(DB00426)|Menadione(DB00170)|Methotrexate(DB00563)|NADH(DB00157)|Palonosetron(DB00377)|Penciclovir(DB00299)|Raloxifene(DB00481)|Zaleplon(DB00962)|Zonisamide(DB00909)									0.320896	111.073688	114.894831	43	91	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	201235872	201235872	739	2	G	A	A	37	37	AOX1	A	1	1
XRCC5	7520	broad.mit.edu	36	2	216703909	216703909	+	Missense_Mutation	SNP	C	T	T			TCGA-06-2561-01	TCGA-06-2561-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr2:216703909C>T	uc002vfy.1	+	c.1004C>T	c.(1003-1005)TCG>TTG	p.S335L	XRCC5_uc002vfz.1_Missense_Mutation_p.S221L	NM_021141	NP_066964	P13010	XRCC5_HUMAN	ATP-dependent DNA helicase II	335	Ku.				double-strand break repair via nonhomologous end joining|initiation of viral infection|negative regulation of transcription, DNA-dependent|provirus integration|telomere maintenance|transcription, DNA-dependent	Ku70:Ku80 complex|nonhomologous end joining complex|nuclear telomere cap complex|nucleoplasm	ATP binding|ATP-dependent DNA helicase activity|double-stranded DNA binding|promoter binding|protein C-terminus binding|telomeric DNA binding			kidney(1)	1		Renal(323;0.0328)												0.266234	109.368356	116.931827	41	113	CC		KEEP	---	---	---	---	capture		Epithelial(149;9.78e-06)|all cancers(144;0.000632)|LUSC - Lung squamous cell carcinoma(224;0.00871)|Lung(261;0.0117)	Missense_Mutation	SNP	216703909	216703909	18039	2	C	T	T	31	31	XRCC5	T	1	1
BCL11A	53335	broad.mit.edu	36	2	60533285	60533285	+	Missense_Mutation	SNP	G	A	A			TCGA-06-2561-01	TCGA-06-2561-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr2:60533285G>A	uc002sab.1	-	c.2251C>T	c.(2251-2253)CGG>TGG	p.R751W	BCL11A_uc002sac.1_Silent_p.F217F	NM_018014	NP_060484	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 2	Error:Variant_position_missing_in_Q9H165_after_alignment					protein sumoylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(1)|skin(1)	11									p.R751W(SNU520-Tumor)	131				0.330357	103.22529	106.087955	37	75	GG		KEEP	---	---	---	---	capture	LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)		Missense_Mutation	SNP	60533285	60533285	1384	2	G	A	A	37	37	BCL11A	A	1	1
FANCD2	2177	broad.mit.edu	36	3	10082617	10082617	+	Missense_Mutation	SNP	C	T	T			TCGA-06-2561-01	TCGA-06-2561-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr3:10082617C>T	uc003buw.1	+	c.2339C>T	c.(2338-2340)TCA>TTA	p.S780L	FANCD2_uc003bux.1_Missense_Mutation_p.S780L|FANCD2_uc003buy.1_Missense_Mutation_p.S780L|FANCD2_uc010hcw.1_Non-coding_Transcript	NM_033084	NP_149075	Q9BXW9	FACD2_HUMAN	Fanconi anemia complementation group D2 isoform	780					DNA repair|response to gamma radiation	nucleoplasm	protein binding|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4										587				0.261261	70.418198	76.148615	29	82	CC		KEEP	---	---	---	---	capture		OV - Ovarian serous cystadenocarcinoma(96;0.148)	Missense_Mutation	SNP	10082617	10082617	5901	3	C	T	T	29	29	FANCD2	T	2	2
SRGAP3	9901	broad.mit.edu	36	3	9030068	9030068	+	Nonsense_Mutation	SNP	C	A	A			TCGA-06-2561-01	TCGA-06-2561-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr3:9030068C>A	uc003brf.1	-	c.2071G>T	c.(2071-2073)GAA>TAA	p.E691*	SRGAP3_uc003brg.1_Nonsense_Mutation_p.E667*	NM_014850	NP_055665	O43295	SRGP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 3	691					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding		SRGAP3/RAF1(4)	central_nervous_system(4)|urinary_tract(1)|breast(1)	6														0.25	60.121383	65.807015	25	75	CC		KEEP	---	---	---	---	capture		OV - Ovarian serous cystadenocarcinoma(96;0.0563)	Nonsense_Mutation	SNP	9030068	9030068	15661	3	C	A	A	29	29	SRGAP3	A	5	3
KIAA1211	57482	broad.mit.edu	36	4	56884314	56884314	+	Nonsense_Mutation	SNP	C	T	T			TCGA-06-2561-01	TCGA-06-2561-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr4:56884314C>T	uc003hbk.2	+	c.3202C>T	c.(3202-3204)CAG>TAG	p.Q1068*		NM_020722	NP_065773	Q6ZU35	K1211_HUMAN	hypothetical protein LOC57482	1068										ovary(1)|skin(1)	2	Glioma(25;0.08)|all_neural(26;0.101)													0.295455	67.309603	70.607045	26	62	CC		KEEP	---	---	---	---	capture			Nonsense_Mutation	SNP	56884314	56884314	8523	4	C	T	T	29	29	KIAA1211	T	5	2
UGT2A1	10941	broad.mit.edu	36	4	70539661	70539661	+	Missense_Mutation	SNP	A	G	G			TCGA-06-2561-01	TCGA-06-2561-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr4:70539661A>G	uc010ihs.1	-	c.263T>C	c.(262-264)ATT>ACT	p.I88T	UGT2A1_uc003hem.2_Intron|UGT2A1_uc010iht.1_Intron|UGT2A1_uc010ihu.1_Intron	NM_001105677	NP_001099147	Q9Y4X1	UD2A1_HUMAN	UDP glucuronosyltransferase 2 family,	87	Extracellular (Potential).				detection of chemical stimulus|sensory perception of smell	integral to membrane	glucuronosyltransferase activity|glucuronosyltransferase activity			ovary(1)	1														0.314136	194.837129	200.704746	60	131	AA		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	70539661	70539661	17511	4	A	G	G	4	4	UGT2A1	G	4	4
SNAP91	9892	broad.mit.edu	36	6	84341455	84341455	+	Missense_Mutation	SNP	G	A	A			TCGA-06-2561-01	TCGA-06-2561-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr6:84341455G>A	uc003pka.1	-	c.2435C>T	c.(2434-2436)GCA>GTA	p.A812V	SNAP91_uc003pkb.1_Missense_Mutation_p.A721V|SNAP91_uc003pkc.1_Missense_Mutation_p.A782V|SNAP91_uc003pkd.1_Missense_Mutation_p.A505V	NM_014841	NP_055656	O60641	AP180_HUMAN	synaptosomal-associated protein, 91kDa homolog	812	Pro-rich.				clathrin coat assembly	clathrin coat|coated pit|plasma membrane	1-phosphatidylinositol binding|clathrin binding			ovary(1)	1		all_cancers(76;0.000243)|Acute lymphoblastic leukemia(125;2.91e-07)|all_hematologic(105;0.000337)|all_epithelial(107;0.0575)												0.5	16.347876	16.347876	6	6	GG		KEEP	---	---	---	---	capture		BRCA - Breast invasive adenocarcinoma(397;0.0967)	Missense_Mutation	SNP	84341455	84341455	15333	6	G	A	A	46	46	SNAP91	A	2	2
MDN1	23195	broad.mit.edu	36	6	90459560	90459560	+	Missense_Mutation	SNP	C	G	G			TCGA-06-2561-01	TCGA-06-2561-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr6:90459560C>G	uc003pnn.1	-	c.9910G>C	c.(9910-9912)GAT>CAT	p.D3304H		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	3304					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)	8		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)												0.235294	10.5074	11.585681	4	13	CC		KEEP	---	---	---	---	capture		BRCA - Breast invasive adenocarcinoma(108;0.0193)	Missense_Mutation	SNP	90459560	90459560	9804	6	C	G	G	30	30	MDN1	G	3	3
PIK3CG	5294	broad.mit.edu	36	7	106295709	106295709	+	Missense_Mutation	SNP	C	T	T			TCGA-06-2561-01	TCGA-06-2561-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr7:106295709C>T	uc003vdv.2	+	c.467C>T	c.(466-468)GCG>GTG	p.A156V	PIK3CG_uc003vdu.1_Missense_Mutation_p.A156V|PIK3CG_uc003vdw.1_Missense_Mutation_p.A156V	NM_002649	NP_002640	P48736	PK3CG_HUMAN	phosphoinositide-3-kinase, catalytic, gamma	156					G-protein coupled receptor protein signaling pathway|phosphatidylinositol-mediated signaling|platelet activation	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding			central_nervous_system(8)|lung(7)|pancreas(3)|ovary(2)|skin(1)	21										292				0.323529	30.717085	31.654964	11	23	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	106295709	106295709	12340	7	C	T	T	27	27	PIK3CG	T	1	1
SDK1	221935	broad.mit.edu	36	7	4214346	4214346	+	Silent	SNP	G	C	C			TCGA-06-2561-01	TCGA-06-2561-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr7:4214346G>C	uc003smx.1	+	c.5304G>C	c.(5302-5304)CTG>CTC	p.L1768L	SDK1_uc010kso.1_Silent_p.L1024L|SDK1_uc003smy.1_Silent_p.L255L	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 isoform 1	1768	Fibronectin type-III 11.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)	5		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)												0.126582	10.007672	20.757365	10	69	GG		KEEP	---	---	---	---	capture		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)	Silent	SNP	4214346	4214346	14454	7	G	C	C	45	45	SDK1	C	3	3
OR1B1	347169	broad.mit.edu	36	9	124430912	124430912	+	Nonsense_Mutation	SNP	G	A	A			TCGA-06-2561-01	TCGA-06-2561-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr9:124430912G>A	uc004bmr.1	-	c.724C>T	c.(724-726)CGA>TGA	p.R242*		NM_001004450	NP_001004450	Q8NGR6	OR1B1_HUMAN	olfactory receptor, family 1, subfamily B,	242	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0														0.571429	101.192032	101.439539	32	24	GG		KEEP	---	---	---	---	capture			Nonsense_Mutation	SNP	124430912	124430912	11357	9	G	A	A	39	39	OR1B1	A	5	1
STAG2	10735	broad.mit.edu	36	X	123025582	123025582	+	Missense_Mutation	SNP	G	C	C			TCGA-06-2561-01	TCGA-06-2561-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chrX:123025582G>C	uc004eua.1	+	c.2025G>C	c.(2023-2025)GAG>GAC	p.E675D	STAG2_uc004etz.2_Missense_Mutation_p.E675D|STAG2_uc004eub.1_Missense_Mutation_p.E675D|STAG2_uc004euc.1_Missense_Mutation_p.E675D|STAG2_uc004eud.1_Missense_Mutation_p.E675D|STAG2_uc004eue.1_Missense_Mutation_p.E675D	NM_001042749	NP_001036215	Q8N3U4	STAG2_HUMAN	stromal antigen 2 isoform a	675					cell division|meiosis|mitotic metaphase/anaphase transition|mitotic prometaphase|negative regulation of DNA endoreduplication|sister chromatid cohesion	chromatin|chromosome, centromeric region|nucleoplasm	protein binding			ovary(4)|skin(1)	5														0.321429	45.927167	47.514934	18	38	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	123025582	123025582	15761	23	G	C	C	35	35	STAG2	C	3	3
DDX26B	203522	broad.mit.edu	36	X	134507132	134507132	+	Missense_Mutation	SNP	G	A	A			TCGA-06-2561-01	TCGA-06-2561-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chrX:134507132G>A	uc004eyw.2	+	c.308G>A	c.(307-309)AGA>AAA	p.R103K		NM_182540	NP_872346	Q5JSJ4	DX26B_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide	103	VWFA.										0	Acute lymphoblastic leukemia(192;6.56e-05)													0.237668	138.055264	152.080521	53	170	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	134507132	134507132	4524	23	G	A	A	33	33	DDX26B	A	2	2
SAGE1	55511	broad.mit.edu	36	X	134821136	134821136	+	Missense_Mutation	SNP	T	A	A			TCGA-06-2561-01	TCGA-06-2561-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chrX:134821136T>A	uc004ezh.1	+	c.2125T>A	c.(2125-2127)TGC>AGC	p.C709S	SAGE1_uc010nry.1_Missense_Mutation_p.C678S	NM_018666	NP_061136	Q9NXZ1	SAGE1_HUMAN	sarcoma antigen 1	709										ovary(1)	1	Acute lymphoblastic leukemia(192;0.000127)													0.30742	258.627462	267.979235	87	196	TT		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	134821136	134821136	14289	23	T	A	A	51	51	SAGE1	A	4	4
NUDT11	55190	broad.mit.edu	36	X	51255860	51255860	+	Silent	SNP	G	A	A			TCGA-06-2561-01	TCGA-06-2561-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chrX:51255860G>A	uc010njt.1	-	c.177C>T	c.(175-177)GGC>GGT	p.G59G		NM_018159	NP_060629	Q96G61	NUD11_HUMAN	nudix-type motif 11	59	Nudix box.|Nudix hydrolase.					cytoplasm	diphosphoinositol-polyphosphate diphosphatase activity|metal ion binding				0	Ovarian(276;0.236)					GBM(38;198 791 1498 11752 13599)				29				0.548387	48.576035	48.639485	17	14	GG		KEEP	---	---	---	---	capture			Silent	SNP	51255860	51255860	11132	23	G	A	A	38	38	NUDT11	A	1	1
PTEN	5728	broad.mit.edu	36	10	89710779	89710782	+	Frame_Shift_Del	DEL	TACT	-	-			TCGA-06-2561-01	TCGA-06-2561-01										Phase_I	Unspecified				Illumina GAIIx	g.chr10:89710779_89710782delTACT	uc001kfb.1	+	c.950_953delTACT	c.(949-954)GTACTTfs	p.V317fs		NM_000314	NP_000305	P60484	PTEN_HUMAN	phosphatase and tensin homolog	317_318	C2 tensin-type.				apoptosis|canonical Wnt receptor signaling pathway|cell proliferation|central nervous system development|induction of apoptosis|inositol phosphate dephosphorylation|negative regulation of cell migration|negative regulation of focal adhesion assembly|negative regulation of protein kinase B signaling cascade|negative regulation of protein phosphorylation|nerve growth factor receptor signaling pathway|phosphatidylinositol dephosphorylation|phosphatidylinositol-mediated signaling|positive regulation of sequence-specific DNA binding transcription factor activity|protein stabilization|regulation of cyclin-dependent protein kinase activity|regulation of neuron projection development|T cell receptor signaling pathway	cytosol|internal side of plasma membrane|PML body	enzyme binding|inositol-1,3,4,5-tetrakisphosphate 3-phosphatase activity|lipid binding|magnesium ion binding|PDZ domain binding|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|phosphatidylinositol-3,4-bisphosphate 3-phosphatase activity|phosphatidylinositol-3-phosphatase activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity	p.L318fs*2(16)|p.V317fs*3(16)|p.V317fs*6(2)|p.G165_K342del(1)|p.G165_*404del(1)|p.L316fs*1(1)|p.V317_K322del(1)|p.W274_F341del(1)|p.L318F(1)|p.T318fs*2(1)		endometrium(831)|central_nervous_system(654)|skin(119)|haematopoietic_and_lymphoid_tissue(101)|prostate(97)|large_intestine(90)|breast(67)|lung(63)|ovary(58)|thyroid(29)|stomach(29)|upper_aerodigestive_tract(25)|cervix(21)|liver(20)|vulva(17)|kidney(15)|NS(14)|soft_tissue(12)|urinary_tract(12)|eye(8)|pancreas(6)|salivary_gland(5)|bone(5)|biliary_tract(4)|autonomic_ganglia(2)|meninges(2)|testis(1)|oesophagus(1)	2308		all_cancers(4;3.61e-31)|all_epithelial(4;3.96e-23)|Prostate(4;8.12e-23)|Breast(4;0.000111)|Melanoma(5;0.00146)|all_hematologic(4;0.00227)|Colorectal(252;0.00494)|all_neural(4;0.00513)|Acute lymphoblastic leukemia(4;0.0116)|Glioma(4;0.0274)|all_lung(38;0.132)	KIRC - Kidney renal clear cell carcinoma(1;0.214)	UCEC - Uterine corpus endometrioid carcinoma (6;0.000228)|all cancers(1;4.16e-84)|GBM - Glioblastoma multiforme(1;7.77e-49)|Epithelial(1;7.67e-41)|OV - Ovarian serous cystadenocarcinoma(1;6.22e-15)|BRCA - Breast invasive adenocarcinoma(1;1.1e-06)|Lung(2;3.18e-06)|Colorectal(12;4.88e-06)|LUSC - Lung squamous cell carcinoma(2;4.97e-06)|COAD - Colon adenocarcinoma(12;1.13e-05)|Kidney(1;0.000288)|KIRC - Kidney renal clear cell carcinoma(1;0.00037)|STAD - Stomach adenocarcinoma(243;0.218)			V317fs*3(SKUT1_SOFT_TISSUE)|V317fs*3(EVSAT_BREAST)|V317fs*3(IGROV1_OVARY)|V317fs*3(ISHIKAWAHERAKLIO02ER_ENDOMETRIUM)	31	p.L318fs(JHOM1-Tumor)|p.V317fs(SKUT1-Tumor)|p.V317fs(EVSAT-Tumor)|p.V317fs(ISHIKAWAHERAKLIO02ER-Tumor)	264	TCGA GBM(2;<1E-8)|TSP Lung(26;0.18)			0.37			68	114				---	---	---	---	capture_indel			Frame_Shift_Del	DEL	89710779	89710782	13192	10	TACT	-	-	57	57	PTEN	-	5	5
DYX1C1	161582	broad.mit.edu	36	15	53577811	53577812	+	Frame_Shift_Del	DEL	AA	-	-			TCGA-06-2561-01	TCGA-06-2561-01										Phase_I	Unspecified				Illumina GAIIx	g.chr15:53577811_53577812delAA	uc002adc.1	-	c.8_9delTT	c.(7-9)CTTfs	p.L3fs	CCPG1_uc002acy.2_5'UTR|DYX1C1_uc002adb.1_Frame_Shift_Del_p.L3fs|DYX1C1_uc002add.1_Frame_Shift_Del_p.L3fs	NM_130810	NP_570722	Q8WXU2	DYXC1_HUMAN	dyslexia susceptibility 1 candidate 1 isoform a	3	CS.				neuron migration|regulation of estrogen receptor signaling pathway|regulation of proteasomal protein catabolic process	cytoplasm|nucleus	estrogen receptor binding				0				all cancers(107;0.0118)|GBM - Glioblastoma multiforme(80;0.171)										0.32			17	36				---	---	---	---	capture_indel			Frame_Shift_Del	DEL	53577811	53577812	5048	15	AA	-	-	9	9	DYX1C1	-	5	5
MLLT3	4300	broad.mit.edu	36	9	20438206	20438206	+	Frame_Shift_Del	DEL	G	-	-			TCGA-06-2561-01	TCGA-06-2561-01										Phase_I	Unspecified				Illumina GAIIx	g.chr9:20438206_20438206delG	uc003zoe.2	-	c.335_335delC	c.(334-336)CCAfs	p.P112fs	MLLT3_uc003zof.2_Intron	NM_004529	NP_004520	P42568	AF9_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	112	YEATS.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			ovary(1)|lung(1)	2				GBM - Glioblastoma multiforme(3;4.35e-105)|Lung(42;3.48e-06)|LUSC - Lung squamous cell carcinoma(42;7.92e-05)						216				0.50			112	110				---	---	---	---	capture_indel			Frame_Shift_Del	DEL	20438206	20438206	10018	9	G	-	-	47	47	MLLT3	-	5	5
