Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Genome_Change	Annotation_Transcript	Transcript_Strand	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	i_TCGAscape_Amplification_Peaks	i_TCGAscape_Deletion_Peaks	DrugBank	i_ACHILLES_Top_Genes	i_CCLE_ONCOMAP_overlapping_mutations	i_CCLE_ONCOMAP_total_mutations_in_gene	i_CCLE_SEQ_overlapping_mutations	i_CCLE_SEQ_total_mutations_in_gene	MUTSIG_Significant_Genes	OREGANNO_ID	OREGANNO_Values	i_tumor_f	i_init_t_lod	i_t_lod_fstar	i_t_alt_count	i_t_ref_count	i_normal_best_gt	i_failure_reasons	i_judgement	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	dataset	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context_orig	context65	gene_name	newbase	categ	categ_ignoring_null_categ
DHX32	55760	broad.mit.edu	36	10	127515405	127515405	+	Silent	SNP	C	T	T			TCGA-12-3651-01	TCGA-12-3651-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr10:127515405C>T	uc001ljf.1	-	c.2073G>A	c.(2071-2073)CAG>CAA	p.Q691Q	DHX32_uc001lje.1_Silent_p.Q315Q|DHX32_uc001ljg.1_Silent_p.Q691Q|BCCIP_uc001ljc.2_Intron|BCCIP_uc001ljd.2_Intron	NM_018180	NP_060650	Q7L7V1	DHX32_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 32	691						mitochondrion|nucleus	ATP binding|helicase activity			breast(2)|ovary(1)|lung(1)	4		all_lung(145;0.00751)|Lung NSC(174;0.0115)|Colorectal(57;0.0846)|all_neural(114;0.0936)												0.169643	38.453179	50.023941	19	93	CC		KEEP	---	---	---	---	capture			Silent	SNP	127515405	127515405	4684	10	C	T	T	28	28	DHX32	T	2	2
C11orf92	399948	broad.mit.edu	36	11	110672252	110672252	+	Silent	SNP	C	A	A			TCGA-12-3651-01	TCGA-12-3651-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr11:110672252C>A	uc001pld.1	-	c.162G>T	c.(160-162)GGG>GGT	p.G54G	C11orf92_uc001ple.1_Non-coding_Transcript|C11orf92_uc009yyc.1_Silent_p.G54G	NM_207429	NP_997312			hypothetical protein LOC399948											lung(1)	1														0.193548	25.769146	31.200631	12	50	CC		KEEP	---	---	---	---	capture			Silent	SNP	110672252	110672252	1714	11	C	A	A	22	22	C11orf92	A	3	3
HTR3A	3359	broad.mit.edu	36	11	113362558	113362558	+	Missense_Mutation	SNP	G	A	A			TCGA-12-3651-01	TCGA-12-3651-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr11:113362558G>A	uc001pon.1	+	c.814G>A	c.(814-816)GAG>AAG	p.E272K	HTR3A_uc001pom.1_Missense_Mutation_p.E272K|HTR3A_uc009yyx.1_Non-coding_Transcript	NM_213621	NP_998786	P46098	5HT3A_HUMAN	5-hydroxytryptamine (serotonin) receptor 3A	272	Cytoplasmic (Potential).				digestion|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic membrane	serotonin binding|serotonin receptor activity|serotonin-activated cation-selective channel activity				0		all_cancers(61;2.31e-17)|all_epithelial(67;2.1e-10)|all_hematologic(158;4.64e-05)|Melanoma(852;0.000312)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Prostate(24;0.0294)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;2.71e-06)|Epithelial(105;2.58e-05)|all cancers(92;0.000238)|OV - Ovarian serous cystadenocarcinoma(223;0.191)	Alosetron(DB00969)|Chloroprocaine(DB01161)|Cisapride(DB00604)|Dolasetron(DB00757)|Granisetron(DB00889)|Mirtazapine(DB00370)|Ondansetron(DB00904)|Palonosetron(DB00377)|Procaine(DB00721)|Tubocurarine(DB01199)									0.2	46.319806	55.10757	21	84	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	113362558	113362558	7744	11	G	A	A	37	37	HTR3A	A	1	1
MUC5B	727897	broad.mit.edu	36	11	1220373	1220373	+	Missense_Mutation	SNP	C	T	T			TCGA-12-3651-01	TCGA-12-3651-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr11:1220373C>T	uc001ltb.2	+	c.5696C>T	c.(5695-5697)ACG>ATG	p.T1899M		NM_002458	NP_002449	Q9HC84	MUC5B_HUMAN	mucin 5, subtype B, tracheobronchial	1896	7 X Cys-rich subdomain repeats.|11 X approximate tandem repeats, Ser/Thr- rich.|Thr-rich.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)										0.263889	50.093981	53.722323	19	53	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	1220373	1220373	10373	11	C	T	T	19	19	MUC5B	T	1	1
QSER1	79832	broad.mit.edu	36	11	32912694	32912694	+	Missense_Mutation	SNP	C	T	T			TCGA-12-3651-01	TCGA-12-3651-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr11:32912694C>T	uc001mty.1	+	c.2927C>T	c.(2926-2928)CCA>CTA	p.P976L	QSER1_uc001mtz.1_Missense_Mutation_p.P737L|QSER1_uc001mua.2_Missense_Mutation_p.P481L	NM_001076786	NP_001070254	Q2KHR3	QSER1_HUMAN	glutamine and serine rich 1	976										ovary(3)|central_nervous_system(2)	5	Breast(20;0.158)													0.246914	48.359488	53.083235	20	61	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	32912694	32912694	13340	11	C	T	T	21	21	QSER1	T	2	2
PTDSS2	81490	broad.mit.edu	36	11	478555	478555	+	Silent	SNP	C	T	T			TCGA-12-3651-01	TCGA-12-3651-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr11:478555C>T	uc001lpj.1	+	c.762C>T	c.(760-762)AAC>AAT	p.N254N		NM_030783	NP_110410	Q9BVG9	PTSS2_HUMAN	phosphatidylserine synthase 2	254	Helical; (Potential).					integral to membrane					0		all_cancers(49;1.59e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;2.76e-26)|Epithelial(43;2.56e-25)|OV - Ovarian serous cystadenocarcinoma(40;7.54e-20)|BRCA - Breast invasive adenocarcinoma(625;8.76e-05)|Lung(200;0.0407)|LUSC - Lung squamous cell carcinoma(625;0.0735)	Phosphatidylserine(DB00144)									0.466667	22.928436	22.942379	7	8	CC		KEEP	---	---	---	---	capture			Silent	SNP	478555	478555	13191	11	C	T	T	19	19	PTDSS2	T	1	1
KLRC1	3821	broad.mit.edu	36	12	10494959	10494959	+	Nonsense_Mutation	SNP	G	A	A			TCGA-12-3651-01	TCGA-12-3651-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr12:10494959G>A	uc001qyl.1	-	c.64C>T	c.(64-66)CGA>TGA	p.R22*	KLRC1_uc009zhm.1_Nonsense_Mutation_p.R22*|KLRC1_uc001qym.1_Nonsense_Mutation_p.R22*|KLRC1_uc001qyn.1_Nonsense_Mutation_p.R22*|KLRC1_uc001qyo.1_Nonsense_Mutation_p.R22*	NM_002259	NP_998823	P26715	NKG2A_HUMAN	killer cell lectin-like receptor subfamily C,	22	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|regulation of immune response	integral to plasma membrane	sugar binding|transmembrane receptor activity				0														0.230769	41.013567	46.19392	18	60	GG		KEEP	---	---	---	---	capture			Nonsense_Mutation	SNP	10494959	10494959	8729	12	G	A	A	40	40	KLRC1	A	5	1
CAPRIN2	65981	broad.mit.edu	36	12	30754384	30754384	+	Missense_Mutation	SNP	C	T	T			TCGA-12-3651-01	TCGA-12-3651-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr12:30754384C>T	uc001rji.1	-	c.3103G>A	c.(3103-3105)GGT>AGT	p.G1035S	CAPRIN2_uc001rjf.1_3'UTR|CAPRIN2_uc001rjg.1_Missense_Mutation_p.G702S|CAPRIN2_uc001rjh.1_Missense_Mutation_p.G985S|CAPRIN2_uc001rjj.1_Missense_Mutation_p.G701S|CAPRIN2_uc001rjk.2_3'UTR|CAPRIN2_uc001rjl.2_3'UTR	NM_001002259	NP_001002259	Q6IMN6	CAPR2_HUMAN	C1q domain containing 1 isoform 1	1035	C1q.				negative regulation of cell growth|negative regulation of translation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of dendrite morphogenesis|positive regulation of dendritic spine morphogenesis|positive regulation of gene-specific transcription from RNA polymerase II promoter|positive regulation of peptidyl-serine phosphorylation|positive regulation of protein binding	mitochondrion|receptor complex	receptor binding|RNA binding			ovary(1)|central_nervous_system(1)	2	all_lung(12;1.13e-09)|Lung NSC(12;7.98e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0355)|Lung SC(12;0.0905)|Esophageal squamous(101;0.233)													0.458904	220.314965	220.529091	67	79	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	30754384	30754384	2755	12	C	T	T	21	21	CAPRIN2	T	2	2
CAPRIN2	65981	broad.mit.edu	36	12	30759180	30759180	+	Missense_Mutation	SNP	C	A	A			TCGA-12-3651-01	TCGA-12-3651-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr12:30759180C>A	uc001rji.1	-	c.2630G>T	c.(2629-2631)CGG>CTG	p.R877L	CAPRIN2_uc001rjf.1_Missense_Mutation_p.R673L|CAPRIN2_uc001rjg.1_Missense_Mutation_p.R544L|CAPRIN2_uc001rjh.1_Missense_Mutation_p.R827L|CAPRIN2_uc001rjj.1_Missense_Mutation_p.R543L|CAPRIN2_uc001rjk.2_Missense_Mutation_p.R876L|CAPRIN2_uc001rjl.2_Missense_Mutation_p.R821L|CAPRIN2_uc001rjm.1_3'UTR	NM_001002259	NP_001002259	Q6IMN6	CAPR2_HUMAN	C1q domain containing 1 isoform 1	877					negative regulation of cell growth|negative regulation of translation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of dendrite morphogenesis|positive regulation of dendritic spine morphogenesis|positive regulation of gene-specific transcription from RNA polymerase II promoter|positive regulation of peptidyl-serine phosphorylation|positive regulation of protein binding	mitochondrion|receptor complex	receptor binding|RNA binding			ovary(1)|central_nervous_system(1)	2	all_lung(12;1.13e-09)|Lung NSC(12;7.98e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0355)|Lung SC(12;0.0905)|Esophageal squamous(101;0.233)													0.336364	109.544369	112.148389	37	73	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	30759180	30759180	2755	12	C	A	A	23	23	CAPRIN2	A	3	3
ANKS1B	56899	broad.mit.edu	36	12	98072218	98072218	+	Missense_Mutation	SNP	A	G	G			TCGA-12-3651-01	TCGA-12-3651-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr12:98072218A>G	uc001tge.1	-	c.2506T>C	c.(2506-2508)TTT>CTT	p.F836L	ANKS1B_uc001tgf.1_Missense_Mutation_p.F412L|ANKS1B_uc001tgd.1_Missense_Mutation_p.F62L|ANKS1B_uc001tgg.2_Missense_Mutation_p.F5L|ANKS1B_uc001tgi.1_Missense_Mutation_p.F62L|ANKS1B_uc009ztr.1_Missense_Mutation_p.F62L|ANKS1B_uc001tgj.1_Missense_Mutation_p.F62L|ANKS1B_uc001tgk.1_Missense_Mutation_p.F133L|ANKS1B_uc009zts.1_Missense_Mutation_p.F62L|ANKS1B_uc001tgm.1_Missense_Mutation_p.F62L	NM_152788	NP_690001	Q7Z6G8	ANS1B_HUMAN	cajalin 2 isoform a	836	SAM 1.					Cajal body|cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane					0		all_cancers(3;0.0197)|all_epithelial(3;0.0101)|Esophageal squamous(3;0.0559)|Breast(359;0.209)		OV - Ovarian serous cystadenocarcinoma(2;2.89e-08)|Epithelial(2;6.12e-08)|all cancers(2;4.07e-06)										0.352804	472.914289	481.084216	151	277	AA		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	98072218	98072218	697	12	A	G	G	4	4	ANKS1B	G	4	4
PPP1R13B	23368	broad.mit.edu	36	14	103277890	103277890	+	Silent	SNP	T	A	A			TCGA-12-3651-01	TCGA-12-3651-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr14:103277890T>A	uc001yof.1	-	c.1812A>T	c.(1810-1812)TCA>TCT	p.S604S	PPP1R13B_uc001yog.1_Silent_p.S471S|PPP1R13B_uc010awv.1_Non-coding_Transcript	NM_015316	NP_056131	Q96KQ4	ASPP1_HUMAN	apoptosis-stimulating protein of p53, 1	604	Pro-rich.				apoptosis|induction of apoptosis|negative regulation of cell cycle	cytoplasm|nucleus|plasma membrane	protein binding			ovary(1)	1		all_cancers(154;0.173)|all_epithelial(191;0.131)|Melanoma(154;0.155)												0.181818	6.886158	8.979971	4	18	TT		KEEP	---	---	---	---	capture			Silent	SNP	103277890	103277890	12792	14	T	A	A	55	55	PPP1R13B	A	4	4
RCN2	5955	broad.mit.edu	36	15	75026860	75026860	+	Missense_Mutation	SNP	G	A	A			TCGA-12-3651-01	TCGA-12-3651-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr15:75026860G>A	uc002bce.1	+	c.659G>A	c.(658-660)GGT>GAT	p.G220D	RCN2_uc002bcd.1_Missense_Mutation_p.G202D|RCN2_uc010bks.1_Missense_Mutation_p.G101D	NM_002902	NP_002893	Q14257	RCN2_HUMAN	reticulocalbin 2 precursor	202	4 (Potential).|EF-hand 4.					endoplasmic reticulum lumen	calcium ion binding				0														0.275676	141.044361	149.426973	51	134	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	75026860	75026860	13649	15	G	A	A	44	44	RCN2	A	2	2
TMC3	342125	broad.mit.edu	36	15	79447671	79447671	+	Missense_Mutation	SNP	C	G	G			TCGA-12-3651-01	TCGA-12-3651-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr15:79447671C>G	uc002bgo.1	-	c.290G>C	c.(289-291)GGC>GCC	p.G97A	TMC3_uc010blr.1_Non-coding_Transcript|TMC3_uc002bgp.2_Missense_Mutation_p.G97A	NM_001080532	NP_001074001	Q7Z5M5	TMC3_HUMAN	transmembrane channel-like 3	97	Cytoplasmic (Potential).					integral to membrane				ovary(1)|liver(1)	2														0.212	273.065942	311.420419	106	394	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	79447671	79447671	16516	15	C	G	G	26	26	TMC3	G	3	3
CHP2	63928	broad.mit.edu	36	16	23674934	23674934	+	Missense_Mutation	SNP	C	T	T			TCGA-12-3651-01	TCGA-12-3651-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr16:23674934C>T	uc002dmb.1	+	c.271C>T	c.(271-273)CGC>TGC	p.R91C		NM_022097	NP_071380	O43745	CHP2_HUMAN	hepatocellular carcinoma antigen gene 520	91	EF-hand 2.						calcium ion binding			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(48;0.0144)										0.204819	34.929946	41.641788	17	66	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	23674934	23674934	3501	16	C	T	T	31	31	CHP2	T	1	1
ZNF764	92595	broad.mit.edu	36	16	30474372	30474372	+	Missense_Mutation	SNP	C	A	A			TCGA-12-3651-01	TCGA-12-3651-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr16:30474372C>A	uc002dyq.1	-	c.871G>T	c.(871-873)GAC>TAC	p.D291Y	ZNF764_uc002dyr.1_Missense_Mutation_p.D290Y	NM_033410	NP_219363	Q96H86	ZN764_HUMAN	zinc finger protein 764	291	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1														0.6	7.223273	7.266635	3	2	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	30474372	30474372	18736	16	C	A	A	30	30	ZNF764	A	3	3
PLCG2	5336	broad.mit.edu	36	16	80501760	80501760	+	Missense_Mutation	SNP	G	A	A			TCGA-12-3651-01	TCGA-12-3651-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr16:80501760G>A	uc002fgt.1	+	c.1868G>A	c.(1867-1869)CGC>CAC	p.R623H	PLCG2_uc010chg.1_Missense_Mutation_p.R623H	NM_002661	NP_002652	P16885	PLCG2_HUMAN	phospholipase C, gamma 2	623	SH2 1.			R -> P (in Ref. 1; AAA60112/CAA32194 and 3; AAQ76815).	intracellular signal transduction|phospholipid catabolic process|platelet activation	plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			large_intestine(4)|lung(2)|ovary(1)|skin(1)	8										1880				0.273312	453.769974	482.518061	170	452	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	80501760	80501760	12462	16	G	A	A	38	38	PLCG2	A	1	1
ABAT	18	broad.mit.edu	36	16	8776283	8776283	+	Silent	SNP	C	T	T			TCGA-12-3651-01	TCGA-12-3651-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr16:8776283C>T	uc002czc.2	+	c.990C>T	c.(988-990)ACC>ACT	p.T330T	ABAT_uc002czd.2_Silent_p.T330T|ABAT_uc010buh.1_Silent_p.T272T|ABAT_uc010bui.1_Silent_p.T330T	NM_020686	NP_065737	P80404	GABT_HUMAN	4-aminobutyrate aminotransferase precursor	330					behavioral response to cocaine|gamma-aminobutyric acid catabolic process|neurotransmitter catabolic process|neurotransmitter secretion	4-aminobutyrate transaminase complex|mitochondrial matrix	(S)-3-amino-2-methylpropionate transaminase activity|4-aminobutyrate transaminase activity|protein homodimerization activity|pyridoxal phosphate binding|succinate-semialdehyde dehydrogenase binding				0					Divalproex sodium(DB00510)|Isoniazid(DB00951)|L-Alanine(DB00160)|L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)|Pyruvic acid(DB00119)|Tiagabine(DB00906)|Valproic Acid(DB00313)|Vigabatrin(DB01080)									0.301205	68.946361	71.874138	25	58	CC		KEEP	---	---	---	---	capture			Silent	SNP	8776283	8776283	28	16	C	T	T	23	23	ABAT	T	1	1
OR3A1	4994	broad.mit.edu	36	17	3142153	3142153	+	Silent	SNP	G	A	A			TCGA-12-3651-01	TCGA-12-3651-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr17:3142153G>A	uc002fvh.1	-	c.474C>T	c.(472-474)AAC>AAT	p.N158N		NM_002550	NP_002541	P47881	OR3A1_HUMAN	olfactory receptor, family 3, subfamily A,	158	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			kidney(2)|central_nervous_system(1)	3						GBM(20;287 516 18743 28660 36594)								0.169811	224.043385	295.179082	117	572	GG		KEEP	---	---	---	---	capture			Silent	SNP	3142153	3142153	11443	17	G	A	A	40	40	OR3A1	A	1	1
STAT5B	6777	broad.mit.edu	36	17	37613231	37613231	+	Missense_Mutation	SNP	C	G	G			TCGA-12-3651-01	TCGA-12-3651-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr17:37613231C>G	uc002hzh.1	-	c.1948G>C	c.(1948-1950)GAC>CAC	p.D650H		NM_012448	NP_036580	P51692	STA5B_HUMAN	signal transducer and activator of transcription	650	SH2.				2-oxoglutarate metabolic process|allantoin metabolic process|citrate metabolic process|creatine metabolic process|creatinine metabolic process|fatty acid metabolic process|isoleucine metabolic process|JAK-STAT cascade involved in growth hormone signaling pathway|oxaloacetate metabolic process|response to estradiol stimulus|succinate metabolic process|taurine metabolic process|valine metabolic process	cytosol|nucleoplasm	calcium ion binding|glucocorticoid receptor binding|sequence-specific DNA binding transcription factor activity			ovary(3)|lung(2)	5		all_cancers(22;4.15e-07)|all_epithelial(22;2.83e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.135)	Dasatinib(DB01254)					288				0.222222	25.011	29.490816	14	49	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	37613231	37613231	15789	17	C	G	G	32	32	STAT5B	G	3	3
SPNS2	124976	broad.mit.edu	36	17	4363338	4363338	+	Missense_Mutation	SNP	G	A	A			TCGA-12-3651-01	TCGA-12-3651-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr17:4363338G>A	uc002fxx.2	+	c.418G>A	c.(418-420)GCC>ACC	p.A140T		NM_001124758	NP_001118230	Q8IVW8	SPNS2_HUMAN	spinster homolog 2	140					lipid transport|transmembrane transport	integral to membrane					0														0.261905	56.112259	60.421004	22	62	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	4363338	4363338	15588	17	G	A	A	38	38	SPNS2	A	1	1
KIF2B	84643	broad.mit.edu	36	17	49256625	49256625	+	Missense_Mutation	SNP	G	A	A			TCGA-12-3651-01	TCGA-12-3651-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr17:49256625G>A	uc002iua.2	+	c.1232G>A	c.(1231-1233)CGG>CAG	p.R411Q		NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	411	Kinesin-motor.				blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)	5														0.291045	103.54804	108.807524	39	95	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	49256625	49256625	8609	17	G	A	A	39	39	KIF2B	A	1	1
TEX2	55852	broad.mit.edu	36	17	59619292	59619292	+	Missense_Mutation	SNP	T	A	A			TCGA-12-3651-01	TCGA-12-3651-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr17:59619292T>A	uc002jed.1	-	c.2413A>T	c.(2413-2415)AGT>TGT	p.S805C	TEX2_uc002jec.1_Missense_Mutation_p.S798C|TEX2_uc002jee.1_Missense_Mutation_p.S798C	NM_018469	NP_060939	Q8IWB9	TEX2_HUMAN	testis expressed sequence 2	798					signal transduction|sphingolipid metabolic process	integral to membrane				ovary(1)	1			BRCA - Breast invasive adenocarcinoma(8;1.33e-10)	READ - Rectum adenocarcinoma(1115;0.0689)										0.132075	9.571068	23.541135	14	92	TT		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	59619292	59619292	16308	17	T	A	A	54	54	TEX2	A	4	4
SLC16A5	9121	broad.mit.edu	36	17	70608153	70608153	+	Missense_Mutation	SNP	G	A	A			TCGA-12-3651-01	TCGA-12-3651-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr17:70608153G>A	uc002jmr.1	+	c.800G>A	c.(799-801)AGC>AAC	p.S267N	SLC16A5_uc002jms.1_Missense_Mutation_p.S267N|SLC16A5_uc002jmt.1_Missense_Mutation_p.S267N|SLC16A5_uc002jmu.1_Missense_Mutation_p.S267N	NM_004695	NP_004686	O15375	MOT6_HUMAN	solute carrier family 16, member 5	267	Extracellular (Potential).				organic anion transport	integral to plasma membrane|membrane fraction	secondary active monocarboxylate transmembrane transporter activity|symporter activity			central_nervous_system(1)	1	all_lung(278;0.226)		LUSC - Lung squamous cell carcinoma(166;0.162)|Lung(188;0.235)		Pyruvic acid(DB00119)									0.3856	721.5252	728.695201	241	384	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	70608153	70608153	14907	17	G	A	A	34	34	SLC16A5	A	2	2
ARHGEF15	22899	broad.mit.edu	36	17	8156437	8156437	+	Missense_Mutation	SNP	C	T	T			TCGA-12-3651-01	TCGA-12-3651-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr17:8156437C>T	uc002glc.1	+	c.355C>T	c.(355-357)CCC>TCC	p.P119S	ARHGEF15_uc002glb.1_Missense_Mutation_p.P119S|ARHGEF15_uc002gld.1_Missense_Mutation_p.P119S	NM_173728	NP_776089	O94989	ARHGF_HUMAN	Rho guanine exchange factor 15	119	Pro-rich.				negative regulation of synapse maturation|regulation of Rho protein signal transduction	dendrite|intracellular	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			ovary(2)	2														0.313253	63.672918	66.277747	26	57	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	8156437	8156437	912	17	C	T	T	22	22	ARHGEF15	T	2	2
DSG4	147409	broad.mit.edu	36	18	27233328	27233328	+	Missense_Mutation	SNP	G	A	A			TCGA-12-3651-01	TCGA-12-3651-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr18:27233328G>A	uc002kwr.1	+	c.1101G>A	c.(1099-1101)ATG>ATA	p.M367I	DSG4_uc002kwq.1_Missense_Mutation_p.M367I	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2	367	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)											0.427835	233.472453	234.356953	83	111	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	27233328	27233328	4963	18	G	A	A	46	46	DSG4	A	2	2
MYOM1	8736	broad.mit.edu	36	18	3102399	3102399	+	Silent	SNP	G	A	A			TCGA-12-3651-01	TCGA-12-3651-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr18:3102399G>A	uc002klp.1	-	c.3315C>T	c.(3313-3315)CTC>CTT	p.L1105L	MYOM1_uc002klq.1_Silent_p.L1009L	NM_003803	NP_003794	P52179	MYOM1_HUMAN	myomesin 1 isoform a	1105	Fibronectin type-III 5.					striated muscle myosin thick filament	structural constituent of muscle			ovary(3)|central_nervous_system(1)|pancreas(1)	5														0.284672	104.364663	110.069499	39	98	GG		KEEP	---	---	---	---	capture			Silent	SNP	3102399	3102399	10486	18	G	A	A	45	45	MYOM1	A	2	2
ALPK2	115701	broad.mit.edu	36	18	54356377	54356377	+	Silent	SNP	T	A	A			TCGA-12-3651-01	TCGA-12-3651-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr18:54356377T>A	uc002lhj.2	-	c.2022A>T	c.(2020-2022)TCA>TCT	p.S674S	ALPK2_uc002lhk.1_Silent_p.S5S	NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	674					protein phosphorylation		ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11										343				0.216495	50.62243	57.814929	21	76	TT		KEEP	---	---	---	---	capture			Silent	SNP	54356377	54356377	548	18	T	A	A	55	55	ALPK2	A	4	4
SERPINB8	5271	broad.mit.edu	36	18	59801814	59801814	+	Missense_Mutation	SNP	A	T	T			TCGA-12-3651-01	TCGA-12-3651-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr18:59801814A>T	uc002lju.1	+	c.446A>T	c.(445-447)GAT>GTT	p.D149V	SERPINB8_uc002ljt.1_Missense_Mutation_p.D149V|SERPINB8_uc002ljv.1_Missense_Mutation_p.D149V	NM_002640	NP_942130	P50452	SPB8_HUMAN	serine (or cysteine) proteinase inhibitor, clade	149					regulation of proteolysis	cytosol	protein binding|serine-type endopeptidase inhibitor activity			skin(1)	1		Esophageal squamous(42;0.129)												0.140426	52.527753	81.851422	33	202	AA		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	59801814	59801814	14595	18	A	T	T	12	12	SERPINB8	T	4	4
PKN1	5585	broad.mit.edu	36	19	14441604	14441604	+	Missense_Mutation	SNP	C	A	A			TCGA-12-3651-01	TCGA-12-3651-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr19:14441604C>A	uc002myq.1	+	c.2212C>A	c.(2212-2214)CAC>AAC	p.H738N	PKN1_uc002myp.1_Missense_Mutation_p.H732N|PKN1_uc002myr.1_Missense_Mutation_p.H72N	NM_213560	NP_998725	Q16512	PKN1_HUMAN	protein kinase N1 isoform 1	732	Protein kinase.				activation of JUN kinase activity|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription, DNA-dependent	endosome|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|GTP-Rho binding|histone binding|histone deacetylase binding|histone kinase activity (H3-T11 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|Rac GTPase binding			ovary(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)	8						NSCLC(185;2539 2965 10733 52867)				331				0.338028	68.288393	69.930631	24	47	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	14441604	14441604	12404	19	C	A	A	29	29	PKN1	A	3	3
HAUS8	93323	broad.mit.edu	36	19	17031396	17031396	+	Missense_Mutation	SNP	A	C	C			TCGA-12-3651-01	TCGA-12-3651-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr19:17031396A>C	uc002nfe.1	-	c.391T>G	c.(391-393)TCA>GCA	p.S131A	HAUS8_uc002nff.1_Missense_Mutation_p.S130A|HAUS8_uc002nfg.1_Missense_Mutation_p.S70A|HAUS8_uc002nfh.1_Missense_Mutation_p.S131A	NM_033417	NP_219485	Q9BT25	HAUS8_HUMAN	sarcoma antigen NY-SAR-48 isoform a	131					cell division|centrosome organization|mitosis|spindle assembly	HAUS complex|microtubule|microtubule organizing center|spindle pole					0														0.254438	120.168641	129.400207	43	126	AA		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	17031396	17031396	7254	19	A	C	C	12	12	HAUS8	C	4	4
DMKN	93099	broad.mit.edu	36	19	40695919	40695919	+	Missense_Mutation	SNP	C	T	T			TCGA-12-3651-01	TCGA-12-3651-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr19:40695919C>T	uc002nzm.2	-	c.299G>A	c.(298-300)GGG>GAG	p.G100E	DMKN_uc002nzj.1_5'Flank|DMKN_uc002nzk.2_5'Flank|DMKN_uc002nzl.2_5'Flank|DMKN_uc002nzo.2_Missense_Mutation_p.G100E|DMKN_uc002nzn.2_Missense_Mutation_p.G100E|DMKN_uc002nzw.2_5'Flank|DMKN_uc002nzr.2_5'Flank|DMKN_uc002nzp.2_5'Flank|DMKN_uc002nzq.2_5'Flank|DMKN_uc002nzt.2_5'Flank|DMKN_uc002nzs.2_5'Flank|DMKN_uc002nzu.2_5'Flank|DMKN_uc002nzv.2_5'Flank|DMKN_uc002nzx.2_5'Flank|DMKN_uc002nzy.2_5'Flank|DMKN_uc002nzz.1_5'Flank|DMKN_uc002oac.2_Missense_Mutation_p.G100E|DMKN_uc010eeb.1_Missense_Mutation_p.G100E|DMKN_uc002oaa.2_Missense_Mutation_p.G100E|DMKN_uc002oab.2_Missense_Mutation_p.G100E	NM_033317	NP_201574	Q6E0U4	DMKN_HUMAN	dermokine isoform 2 precursor	100	Gly-rich.					extracellular region				large_intestine(1)|ovary(1)	2	all_lung(56;1.89e-08)|Lung NSC(56;2.9e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)											0.210937	63.552031	73.447471	27	101	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	40695919	40695919	4762	19	C	T	T	22	22	DMKN	T	2	2
ATP4A	495	broad.mit.edu	36	19	40738485	40738485	+	Missense_Mutation	SNP	C	T	T			TCGA-12-3651-01	TCGA-12-3651-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr19:40738485C>T	uc002oal.1	-	c.1939G>A	c.(1939-1941)GAA>AAA	p.E647K	ATP4A_uc010eee.1_5'UTR	NM_000704	NP_000695	P20648	ATP4A_HUMAN	hydrogen/potassium-exchanging ATPase 4A	647	Cytoplasmic (Potential).				ATP biosynthetic process|ATP hydrolysis coupled proton transport	integral to plasma membrane	ATP binding|hydrogen:potassium-exchanging ATPase activity|magnesium ion binding				0	all_lung(56;1.05e-07)|Lung NSC(56;1.63e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)		Esomeprazole(DB00736)|Lansoprazole(DB00448)|Omeprazole(DB00338)|Pantoprazole(DB00213)|Rabeprazole(DB01129)|Trifluoperazine(DB00831)									0.294118	351.600074	368.354499	130	312	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	40738485	40738485	1164	19	C	T	T	30	30	ATP4A	T	2	2
APLP1	333	broad.mit.edu	36	19	41061825	41061825	+	Missense_Mutation	SNP	G	A	A			TCGA-12-3651-01	TCGA-12-3651-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr19:41061825G>A	uc002ocf.1	+	c.1723G>A	c.(1723-1725)GGG>AGG	p.G575R	APLP1_uc002oce.1_Missense_Mutation_p.G574R|APLP1_uc002ocg.1_Missense_Mutation_p.G478R	NM_001024807	NP_001019978	P51693	APLP1_HUMAN	amyloid precursor-like protein 1 isoform 1	574	Extracellular (Potential).				apoptosis|cell adhesion|cellular response to norepinephrine stimulus|endocytosis|inhibition of adenylate cyclase activity by G-protein signaling pathway|negative regulation of cAMP biosynthetic process|nervous system development|organ morphogenesis	basement membrane|integral to membrane|perinuclear region of cytoplasm|plasma membrane	alpha-2A adrenergic receptor binding|alpha-2B adrenergic receptor binding|alpha-2C adrenergic receptor binding|heparin binding|identical protein binding|metal ion binding			ovary(2)	2	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)											0.823529	187.634597	194.342012	56	12	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	41061825	41061825	789	19	G	A	A	47	47	APLP1	A	2	2
CREB3L3	84699	broad.mit.edu	36	19	4122154	4122154	+	Silent	SNP	G	A	A			TCGA-12-3651-01	TCGA-12-3651-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr19:4122154G>A	uc002lzl.1	+	c.957G>A	c.(955-957)CAG>CAA	p.Q319Q	CREB3L3_uc002lzm.1_Silent_p.Q309Q	NM_032607	NP_115996	Q68CJ9	CR3L3_HUMAN	cAMP responsive element binding protein 3-like	319	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent|response to unfolded protein	endoplasmic reticulum membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0232)|STAD - Stomach adenocarcinoma(1328;0.18)										0.327586	51.202929	52.733139	19	39	GG		KEEP	---	---	---	---	capture			Silent	SNP	4122154	4122154	3997	19	G	A	A	33	33	CREB3L3	A	2	2
RASIP1	54922	broad.mit.edu	36	19	53919861	53919861	+	Missense_Mutation	SNP	C	T	T			TCGA-12-3651-01	TCGA-12-3651-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr19:53919861C>T	uc002pki.1	-	c.2296G>A	c.(2296-2298)GAC>AAC	p.D766N	RASIP1_uc002pkh.1_Missense_Mutation_p.D27N	NM_017805	NP_060275	Q5U651	RAIN_HUMAN	Ras-interacting protein 1	766	Dilute.				signal transduction	Golgi stack|perinuclear region of cytoplasm				pancreas(1)	1		all_lung(116;4.89e-06)|all_epithelial(76;7.04e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;9.98e-05)|all cancers(93;0.000272)|Epithelial(262;0.0155)|GBM - Glioblastoma multiforme(486;0.0222)										0.5	181.343594	181.343594	58	58	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	53919861	53919861	13539	19	C	T	T	29	29	RASIP1	T	2	2
ALDH16A1	126133	broad.mit.edu	36	19	54665374	54665374	+	Splice_Site_SNP	SNP	G	T	T			TCGA-12-3651-01	TCGA-12-3651-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr19:54665374G>T	uc002pnt.1	+	c.e17_splice_site				NM_153329	NP_699160			aldehyde dehydrogenase 16 family, member A1						oxidation-reduction process		oxidoreductase activity|protein binding				0		all_lung(116;5.39e-06)|Lung NSC(112;1.97e-05)|all_neural(266;0.0966)|Ovarian(192;0.15)		OV - Ovarian serous cystadenocarcinoma(262;0.00156)|GBM - Glioblastoma multiforme(486;0.0251)										0.333333	7.791324	8.088872	4	8	GG		KEEP	---	---	---	---	capture			Splice_Site_SNP	SNP	54665374	54665374	491	19	G	T	T	35	35	ALDH16A1	T	5	3
NLRP7	199713	broad.mit.edu	36	19	60143212	60143212	+	Missense_Mutation	SNP	C	A	A			TCGA-12-3651-01	TCGA-12-3651-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr19:60143212C>A	uc010esl.1	-	c.871G>T	c.(871-873)GGG>TGG	p.G291W	NLRP7_uc002qig.2_Missense_Mutation_p.G263W|NLRP7_uc002qii.2_Missense_Mutation_p.G263W|NLRP7_uc002qih.2_Missense_Mutation_p.G263W|NLRP7_uc010esk.1_Missense_Mutation_p.G263W	NM_001127255	NP_001120727	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	263	NACHT.						ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)										0.181818	14.951386	21.247393	12	54	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	60143212	60143212	10885	19	C	A	A	21	21	NLRP7	A	3	3
ZSCAN18	65982	broad.mit.edu	36	19	63293219	63293219	+	Missense_Mutation	SNP	C	G	G			TCGA-12-3651-01	TCGA-12-3651-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr19:63293219C>G	uc002qrh.1	-	c.228G>C	c.(226-228)CAG>CAC	p.Q76H	ZSCAN18_uc002qri.1_Missense_Mutation_p.Q76H|ZSCAN18_uc002qrj.2_Missense_Mutation_p.Q76H|ZSCAN18_uc002qrk.1_Missense_Mutation_p.Q76H|ZSCAN18_uc002qrl.1_Missense_Mutation_p.Q76H	NM_023926	NP_076415	Q8TBC5	ZSC18_HUMAN	zinc finger and SCAN domain containing 18	76	SCAN box.				regulation of transcription, DNA-dependent|viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0412)|Breast(46;0.114)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0152)										0.363636	8.694796	8.875534	4	7	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	63293219	63293219	18834	19	C	G	G	20	20	ZSCAN18	G	3	3
COL5A3	50509	broad.mit.edu	36	19	9938022	9938022	+	Missense_Mutation	SNP	T	G	G			TCGA-12-3651-01	TCGA-12-3651-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr19:9938022T>G	uc002mmq.1	-	c.4750A>C	c.(4750-4752)ACC>CCC	p.T1584P		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	1584	Fibrillar collagen NC1.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)	9			Epithelial(33;7.11e-05)											0.333333	6.489557	6.841038	4	8	TT		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	9938022	9938022	3836	19	T	G	G	58	58	COL5A3	G	4	4
KIAA1324	57535	broad.mit.edu	36	1	109517619	109517619	+	Missense_Mutation	SNP	G	T	T			TCGA-12-3651-01	TCGA-12-3651-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr1:109517619G>T	uc001dwq.1	+	c.697G>T	c.(697-699)GTG>TTG	p.V233L	KIAA1324_uc009wex.1_Missense_Mutation_p.V233L|KIAA1324_uc009wey.1_Missense_Mutation_p.V233L	NM_020775	NP_065826	Q6UXG2	K1324_HUMAN	hypothetical protein LOC57535	233	Extracellular (Potential).					integral to membrane				ovary(2)|breast(1)	3		all_epithelial(167;0.000102)|all_lung(203;0.000323)|Lung NSC(277;0.00063)		Colorectal(144;0.0188)|Lung(183;0.0527)|COAD - Colon adenocarcinoma(174;0.14)|Epithelial(280;0.21)|all cancers(265;0.249)										0.303279	101.734701	105.945395	37	85	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	109517619	109517619	8532	1	G	T	T	44	44	KIAA1324	T	3	3
LCE2C	353140	broad.mit.edu	36	1	150915291	150915291	+	Missense_Mutation	SNP	G	T	T			TCGA-12-3651-01	TCGA-12-3651-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr1:150915291G>T	uc001fah.1	+	c.176G>T	c.(175-177)AGC>ATC	p.S59I	LCE2C_uc009wnk.1_Missense_Mutation_p.S59I	NM_178429	NP_848516	Q5TA81	LCE2C_HUMAN	late cornified envelope 2C	59	Cys-rich.				keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)											0.295732	243.409652	255.751325	97	231	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	150915291	150915291	8990	1	G	T	T	34	34	LCE2C	T	3	3
ATP8B2	57198	broad.mit.edu	36	1	152588018	152588018	+	Missense_Mutation	SNP	C	T	T			TCGA-12-3651-01	TCGA-12-3651-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr1:152588018C>T	uc001fex.1	+	c.3472C>T	c.(3472-3474)CGG>TGG	p.R1158W		NM_020452	NP_065185	P98198	AT8B2_HUMAN	ATPase, class I, type 8B, member 2 isoform a	1144	Cytoplasmic (Potential).				ATP biosynthetic process	plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(1)	1	all_lung(78;2.62e-30)|Lung NSC(65;3.94e-28)|Hepatocellular(266;0.0877)		LUSC - Lung squamous cell carcinoma(543;0.185)											0.270588	55.086575	59.123064	23	62	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	152588018	152588018	1214	1	C	T	T	23	23	ATP8B2	T	1	1
HMCN1	83872	broad.mit.edu	36	1	184353292	184353292	+	Missense_Mutation	SNP	C	T	T	rs12135336	by-hapmap	TCGA-12-3651-01	TCGA-12-3651-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr1:184353292C>T	uc001grq.1	+	c.11762C>T	c.(11761-11763)TCG>TTG	p.S3921L		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1	3921	Ig-like C2-type 38.				bioluminescence|protein-chromophore linkage|response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)	22														0.309524	104.774105	108.849944	39	87	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	184353292	184353292	7511	1	C	T	T	31	31	HMCN1	T	1	1
DDX59	83479	broad.mit.edu	36	1	198899782	198899782	+	Missense_Mutation	SNP	A	C	C			TCGA-12-3651-01	TCGA-12-3651-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr1:198899782A>C	uc009wzk.1	-	c.860T>G	c.(859-861)ATA>AGA	p.I287R	DDX59_uc001gvi.2_Missense_Mutation_p.I287R	NM_001031725	NP_001026895	Q5T1V6	DDX59_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	287	Helicase ATP-binding.					intracellular	ATP binding|ATP-dependent helicase activity|metal ion binding|RNA binding			ovary(2)|breast(1)|central_nervous_system(1)	4														0.344262	62.456842	63.763394	21	40	AA		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	198899782	198899782	4547	1	A	C	C	16	16	DDX59	C	4	4
MIA3	375056	broad.mit.edu	36	1	220905433	220905433	+	Missense_Mutation	SNP	C	T	T			TCGA-12-3651-01	TCGA-12-3651-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr1:220905433C>T	uc001hnl.1	+	c.5573C>T	c.(5572-5574)ACC>ATC	p.T1858I	MIA3_uc001hnm.1_Missense_Mutation_p.T736I	NM_198551	NP_940953	Q5JRA6	MIA3_HUMAN	melanoma inhibitory activity family, member 3	1858	Pro-rich.|Cytoplasmic (Potential).				exocytosis|negative regulation of cell adhesion|negative regulation of cell migration|positive regulation of leukocyte migration|protein transport|wound healing	endoplasmic reticulum membrane|integral to membrane	protein binding			ovary(4)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(131;0.0199)										0.128427	119.511691	212.667033	89	604	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	220905433	220905433	9955	1	C	T	T	18	18	MIA3	T	2	2
WNT9A	7483	broad.mit.edu	36	1	226176086	226176086	+	Missense_Mutation	SNP	C	T	T			TCGA-12-3651-01	TCGA-12-3651-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr1:226176086C>T	uc001hri.1	-	c.854G>A	c.(853-855)CGC>CAC	p.R285H		NM_003395	NP_003386	O14904	WNT9A_HUMAN	wingless-type MMTV integration site family,	285					anterior/posterior pattern formation|axis specification|canonical Wnt receptor signaling pathway|cell-cell signaling|cellular response to retinoic acid|cornea development in camera-type eye|embryonic arm morphogenesis|embryonic skeletal joint morphogenesis|endoderm development|iris morphogenesis|mitotic cell cycle G1/S transition checkpoint|negative regulation of cell proliferation|negative regulation of chondrocyte differentiation|negative regulation of gene-specific transcription from RNA polymerase II promoter|neuron differentiation|positive regulation of smoothened signaling pathway|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|G-protein-coupled receptor binding|signal transducer activity			central_nervous_system(1)|pancreas(1)	2		Prostate(94;0.0405)												0.416667	12.570959	12.644025	5	7	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	226176086	226176086	17972	1	C	T	T	27	27	WNT9A	T	1	1
DPYD	1806	broad.mit.edu	36	1	97620595	97620595	+	Missense_Mutation	SNP	G	A	A			TCGA-12-3651-01	TCGA-12-3651-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr1:97620595G>A	uc001drv.1	-	c.1916C>T	c.(1915-1917)GCT>GTT	p.A639V		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase	639					'de novo' pyrimidine base biosynthetic process|oxidation-reduction process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|breast(2)	5		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)					533				0.257143	25.25851	27.12961	9	26	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	97620595	97620595	4929	1	G	A	A	34	34	DPYD	A	2	2
CABIN1	23523	broad.mit.edu	36	22	22789428	22789428	+	Missense_Mutation	SNP	C	A	A			TCGA-12-3651-01	TCGA-12-3651-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr22:22789428C>A	uc002zzi.1	+	c.1703C>A	c.(1702-1704)CCT>CAT	p.P568H	CABIN1_uc002zzj.1_Missense_Mutation_p.P518H|CABIN1_uc002zzl.1_Missense_Mutation_p.P568H	NM_012295	NP_036427	Q9Y6J0	CABIN_HUMAN	calcineurin binding protein 1	568					cell surface receptor linked signaling pathway|chromatin modification	nucleus	protein phosphatase inhibitor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4														0.5625	175.855335	176.181165	54	42	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	22789428	22789428	2644	22	C	A	A	24	24	CABIN1	A	3	3
PIWIL3	440822	broad.mit.edu	36	22	23461738	23461738	+	Missense_Mutation	SNP	G	C	C			TCGA-12-3651-01	TCGA-12-3651-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr22:23461738G>C	uc003abd.1	-	c.1571C>G	c.(1570-1572)TCC>TGC	p.S524C	PIWIL3_uc010gut.1_Missense_Mutation_p.S524C	NM_001008496	NP_001008496	Q7Z3Z3	PIWL3_HUMAN	piwi-like 3	524					cell differentiation|gene silencing by RNA|meiosis|multicellular organismal development|regulation of translation|spermatogenesis	cytoplasm	RNA binding			ovary(3)|central_nervous_system(1)	4														0.128514	53.542009	87.003867	32	217	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	23461738	23461738	12383	22	G	C	C	41	41	PIWIL3	C	3	3
UQCR10	29796	broad.mit.edu	36	22	28495665	28495665	+	Splice_Site_SNP	SNP	A	G	G			TCGA-12-3651-01	TCGA-12-3651-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr22:28495665A>G	uc003agq.1	+	c.e2_splice_site			ZMAT5_uc003agm.1_5'Flank|ZMAT5_uc003agn.1_5'Flank|ZMAT5_uc003ago.1_5'Flank|UQCR10_uc003agp.1_Splice_Site_SNP	NM_013387	NP_037519			ubiquinol-cytochrome c reductase complex 7.2kDa						mitochondrial electron transport, ubiquinol to cytochrome c	mitochondrial inner membrane|respiratory chain	ubiquinol-cytochrome-c reductase activity			ovary(1)	1														0.307692	7.591182	8.022245	4	9	AA		KEEP	---	---	---	---	capture			Splice_Site_SNP	SNP	28495665	28495665	17577	22	A	G	G	7	7	UQCR10	G	5	4
SMCR7L	54471	broad.mit.edu	36	22	38238246	38238246	+	Nonsense_Mutation	SNP	C	A	A			TCGA-12-3651-01	TCGA-12-3651-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr22:38238246C>A	uc003axw.2	+	c.386C>A	c.(385-387)TCA>TAA	p.S129*	SMCR7L_uc010gxz.1_Intron|SMCR7L_uc003axx.1_Nonsense_Mutation_p.S129*|SMCR7L_uc003axy.1_Intron	NM_019008	NP_061881	Q9NQG6	SMC7L_HUMAN	hypothetical protein LOC54471	129						integral to membrane|mitochondrion				central_nervous_system(1)	1	Melanoma(58;0.04)													0.222222	25.551599	30.676778	16	56	CC		KEEP	---	---	---	---	capture			Nonsense_Mutation	SNP	38238246	38238246	15289	22	C	A	A	29	29	SMCR7L	A	5	3
NBAS	51594	broad.mit.edu	36	2	15473196	15473196	+	Silent	SNP	T	C	C			TCGA-12-3651-01	TCGA-12-3651-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr2:15473196T>C	uc002rcc.1	-	c.2862A>G	c.(2860-2862)TTA>TTG	p.L954L	NBAS_uc010exl.1_Intron|NBAS_uc002rcd.1_Non-coding_Transcript	NM_015909	NP_056993	A2RRP1	NBAS_HUMAN	neuroblastoma-amplified protein	954										ovary(2)|liver(1)	3														0.329412	154.27771	158.645194	56	114	TT		KEEP	---	---	---	---	capture			Silent	SNP	15473196	15473196	10582	2	T	C	C	61	61	NBAS	C	4	4
ALS2CR11	151254	broad.mit.edu	36	2	202109254	202109254	+	Missense_Mutation	SNP	A	G	G			TCGA-12-3651-01	TCGA-12-3651-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr2:202109254A>G	uc002uyf.1	-	c.1241T>C	c.(1240-1242)ATA>ACA	p.I414T	ALS2CR11_uc002uye.1_Missense_Mutation_p.I414T|ALS2CR11_uc010fti.1_Intron	NM_152525	NP_689738	Q53TS8	AL2SA_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	414										large_intestine(1)|ovary(1)	2														0.339535	217.906388	222.801769	73	142	AA		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	202109254	202109254	555	2	A	G	G	16	16	ALS2CR11	G	4	4
FN1	2335	broad.mit.edu	36	2	215952174	215952174	+	Missense_Mutation	SNP	G	A	A			TCGA-12-3651-01	TCGA-12-3651-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr2:215952174G>A	uc002vfa.1	-	c.5546C>T	c.(5545-5547)CCC>CTC	p.P1849L	FN1_uc002vfb.1_Missense_Mutation_p.P1668L|FN1_uc002vfc.1_Missense_Mutation_p.P1668L|FN1_uc002vfd.1_Missense_Mutation_p.P1849L|FN1_uc002vfe.1_Missense_Mutation_p.P1758L|FN1_uc002vff.1_Missense_Mutation_p.P1758L|FN1_uc002vfg.1_Missense_Mutation_p.P1668L|FN1_uc002vfh.1_Missense_Mutation_p.P1668L|FN1_uc002vfi.1_Missense_Mutation_p.P1849L|FN1_uc002vfj.1_Missense_Mutation_p.P1759L|FN1_uc002vez.1_Missense_Mutation_p.P43L|FN1_uc002vfk.1_5'Flank|FN1_uc010fva.1_5'Flank|FN1_uc010fvb.1_5'Flank|FN1_uc010fvc.1_Missense_Mutation_p.P211L|FN1_uc010fvd.1_Intron	NM_212482	NP_997647	P02751	FINC_HUMAN	fibronectin 1 isoform 1 preproprotein	1850	Binds to FBLN1.|Heparin-binding 2.|Fibronectin type-III 14.				acute-phase response|angiogenesis|leukocyte migration|peptide cross-linking|platelet activation|platelet degranulation|regulation of cell shape|substrate adhesion-dependent cell spreading	ER-Golgi intermediate compartment|fibrinogen complex|platelet alpha granule lumen|proteinaceous extracellular matrix	collagen binding|extracellular matrix structural constituent|heparin binding			central_nervous_system(7)|large_intestine(2)|breast(2)|ovary(1)|pancreas(1)	13		Renal(323;0.127)		Epithelial(149;9.59e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)					1374				0.25	184.293144	200.426968	71	213	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	215952174	215952174	6204	2	G	A	A	43	43	FN1	A	2	2
RASGRP3	25780	broad.mit.edu	36	2	33617666	33617666	+	Missense_Mutation	SNP	A	G	G			TCGA-12-3651-01	TCGA-12-3651-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr2:33617666A>G	uc002rox.1	+	c.1163A>G	c.(1162-1164)CAG>CGG	p.Q388R	RASGRP3_uc002roy.1_Splice_Site_SNP	NM_170672	NP_733772	Q8IV61	GRP3_HUMAN	RAS guanyl releasing protein 3 (calcium and	388				Missing (in Ref. 1; BAA74869).	MAPKKK cascade|small GTPase mediated signal transduction	integral to plasma membrane|intracellular	calcium ion binding|diacylglycerol binding|guanyl-nucleotide exchange factor activity|protein binding|Rap GTPase activator activity|signal transducer activity			ovary(1)|lung(1)|pancreas(1)	3	all_hematologic(175;0.115)													0.25	20.257446	22.30389	9	27	AA		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	33617666	33617666	13537	2	A	G	G	7	7	RASGRP3	G	4	4
PRR23B	389151	broad.mit.edu	36	3	140221711	140221711	+	Silent	SNP	G	A	A			TCGA-12-3651-01	TCGA-12-3651-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr3:140221711G>A	uc003esy.1	-	c.483C>T	c.(481-483)CCC>CCT	p.P161P		NM_001013650	NP_001013672	Q6ZRT6	PR23B_HUMAN	hypothetical protein LOC389151	161										breast(1)	1														0.217949	39.445222	45.157134	17	61	GG		KEEP	---	---	---	---	capture			Silent	SNP	140221711	140221711	13043	3	G	A	A	39	39	PRR23B	A	1	1
C3orf33	285315	broad.mit.edu	36	3	157003019	157003019	+	Missense_Mutation	SNP	C	T	T			TCGA-12-3651-01	TCGA-12-3651-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr3:157003019C>T	uc003fam.1	-	c.170G>A	c.(169-171)CGA>CAA	p.R57Q	C3orf33_uc003fal.1_Missense_Mutation_p.R14Q	NM_173657	NP_775928	Q96NB5	Q96NB5_HUMAN	hypothetical protein LOC285315	14							hydrolase activity, acting on ester bonds|nucleic acid binding				0			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)											0.278075	140.137009	148.413404	52	135	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	157003019	157003019	2316	3	C	T	T	31	31	C3orf33	T	1	1
ZNF654	55279	broad.mit.edu	36	3	88272841	88272841	+	Missense_Mutation	SNP	C	T	T			TCGA-12-3651-01	TCGA-12-3651-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr3:88272841C>T	uc003dqv.1	+	c.1691C>T	c.(1690-1692)GCA>GTA	p.A564V	CGGBP1_uc003dqu.1_5'UTR	NM_018293	NP_060763	Q8IZM8	ZN654_HUMAN	zinc finger protein 654	564					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Lung NSC(201;0.0283)		UCEC - Uterine corpus endometrioid carcinoma (27;0.194)|LUSC - Lung squamous cell carcinoma(29;0.00353)|Lung(72;0.00661)										0.274194	88.822315	94.50356	34	90	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	88272841	88272841	18662	3	C	T	T	25	25	ZNF654	T	2	2
FAT4	79633	broad.mit.edu	36	4	126547487	126547487	+	Silent	SNP	T	C	C			TCGA-12-3651-01	TCGA-12-3651-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr4:126547487T>C	uc003ifj.2	+	c.5310T>C	c.(5308-5310)GGT>GGC	p.G1770G	FAT4_uc003ifh.2_Silent_p.G1770G	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4	1770	Cadherin 17.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(8)|pancreas(2)	10														0.291667	99.37359	104.041402	35	85	TT		KEEP	---	---	---	---	capture			Silent	SNP	126547487	126547487	5928	4	T	C	C	59	59	FAT4	C	4	4
PDGFC	56034	broad.mit.edu	36	4	157913474	157913474	+	Missense_Mutation	SNP	G	T	T			TCGA-12-3651-01	TCGA-12-3651-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr4:157913474G>T	uc003iph.1	-	c.517C>A	c.(517-519)CCT>ACT	p.P173T	PDGFC_uc003ipi.1_Missense_Mutation_p.P10T	NM_016205	NP_057289	Q9NRA1	PDGFC_HUMAN	platelet-derived growth factor C precursor	173					central nervous system development|platelet-derived growth factor receptor signaling pathway|positive regulation of cell division|positive regulation of DNA replication|positive regulation of fibroblast proliferation|vascular endothelial growth factor receptor signaling pathway	endoplasmic reticulum lumen|extracellular space|Golgi membrane|nucleus	cell surface binding|growth factor activity|platelet-derived growth factor receptor binding|protein homodimerization activity			ovary(1)|lung(1)	2	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.08)|Kidney(143;0.0977)|COAD - Colon adenocarcinoma(41;0.212)										0.288462	75.799986	79.977814	30	74	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	157913474	157913474	12080	4	G	T	T	41	41	PDGFC	T	3	3
TRIML2	205860	broad.mit.edu	36	4	189249656	189249656	+	Nonsense_Mutation	SNP	G	T	T			TCGA-12-3651-01	TCGA-12-3651-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr4:189249656G>T	uc003izl.1	-	c.1029C>A	c.(1027-1029)TAC>TAA	p.Y343*	TRIML2_uc003izj.1_Nonsense_Mutation_p.Y171*|TRIML2_uc003izk.1_Nonsense_Mutation_p.Y151*	NM_173553	NP_775824	Q8N7C3	TRIMM_HUMAN	tripartite motif family-like 2	343	B30.2/SPRY.						ligase activity			central_nervous_system(2)	2		all_cancers(14;3.11e-44)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|all_hematologic(60;0.0202)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)		OV - Ovarian serous cystadenocarcinoma(60;1.79e-11)|BRCA - Breast invasive adenocarcinoma(30;4.52e-06)|GBM - Glioblastoma multiforme(59;1.62e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.0091)|READ - Rectum adenocarcinoma(43;0.163)										0.240741	128.281271	141.541756	52	164	GG		KEEP	---	---	---	---	capture			Nonsense_Mutation	SNP	189249656	189249656	17101	4	G	T	T	48	48	TRIML2	T	5	3
MXD4	10608	broad.mit.edu	36	4	2223983	2223983	+	Missense_Mutation	SNP	T	G	G			TCGA-12-3651-01	TCGA-12-3651-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr4:2223983T>G	uc003geu.1	-	c.259A>C	c.(259-261)ACC>CCC	p.T87P		NM_006454	NP_006445	Q14582	MAD4_HUMAN	MAD4	87	Helix-loop-helix motif.				negative regulation of cell proliferation|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|transcription corepressor activity|transcription regulator activity				0														0.285714	6.716597	7.353425	4	10	TT		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	2223983	2223983	10395	4	T	G	G	59	59	MXD4	G	4	4
PAQR3	152559	broad.mit.edu	36	4	80079265	80079265	+	Silent	SNP	G	A	A			TCGA-12-3651-01	TCGA-12-3651-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr4:80079265G>A	uc003hlp.1	-	c.138C>T	c.(136-138)ATC>ATT	p.I46I	PAQR3_uc003hlm.2_Non-coding_Transcript|PAQR3_uc003hln.2_Non-coding_Transcript|PAQR3_uc003hlq.1_5'UTR	NM_001040202	NP_001035292	Q6TCH7	PAQR3_HUMAN	progestin and adipoQ receptor family member III	46	Cytoplasmic (Potential).					Golgi membrane|integral to membrane	receptor activity				0										9				0.635688	542.453198	546.802907	171	98	GG		KEEP	---	---	---	---	capture			Silent	SNP	80079265	80079265	11853	4	G	A	A	45	45	PAQR3	A	2	2
GDF9	2661	broad.mit.edu	36	5	132225307	132225307	+	Nonsense_Mutation	SNP	G	C	C			TCGA-12-3651-01	TCGA-12-3651-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr5:132225307G>C	uc003kxz.1	-	c.1238C>G	c.(1237-1239)TCA>TGA	p.S413*		NM_005260	NP_005251	O60383	GDF9_HUMAN	growth differentiation factor 9 precursor	413					female gamete generation|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity				0		all_cancers(142;0.105)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)											0.207792	117.468132	135.743745	48	183	GG		KEEP	---	---	---	---	capture			Nonsense_Mutation	SNP	132225307	132225307	6587	5	G	C	C	45	45	GDF9	C	5	3
PCDHA3	56145	broad.mit.edu	36	5	140162933	140162933	+	Missense_Mutation	SNP	A	C	C			TCGA-12-3651-01	TCGA-12-3651-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr5:140162933A>C	uc003lhf.1	+	c.1967A>C	c.(1966-1968)GAA>GCA	p.E656A	PCDHA1_uc003lha.1_Intron|PCDHA1_uc003lhb.1_Intron|PCDHA2_uc003lhd.1_Intron|PCDHA3_uc003lhe.1_Missense_Mutation_p.E656A	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	656	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(5)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)											0.226667	42.950002	48.083957	17	58	AA		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	140162933	140162933	11945	5	A	C	C	9	9	PCDHA3	C	4	4
PCDHA7	56141	broad.mit.edu	36	5	140196071	140196071	+	Missense_Mutation	SNP	C	T	T			TCGA-12-3651-01	TCGA-12-3651-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr5:140196071C>T	uc003lhq.1	+	c.1919C>T	c.(1918-1920)ACG>ATG	p.T640M	PCDHA1_uc003lha.1_Intron|PCDHA1_uc003lhb.1_Intron|PCDHA2_uc003lhd.1_Intron|PCDHA3_uc003lhf.1_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA4_uc003lhi.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.1_Intron|PCDHA6_uc003lho.1_Intron|PCDHA6_uc003lhn.1_Intron|PCDHA7_uc003lhp.1_Missense_Mutation_p.T640M	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	640	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			NSCLC(160;258 2013 5070 22440 28951)								0.254902	32.553337	35.333061	13	38	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	140196071	140196071	11949	5	C	T	T	19	19	PCDHA7	T	1	1
SLC36A3	285641	broad.mit.edu	36	5	150647167	150647167	+	Missense_Mutation	SNP	G	T	T			TCGA-12-3651-01	TCGA-12-3651-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr5:150647167G>T	uc003ltx.1	-	c.664C>A	c.(664-666)CTG>ATG	p.L222M	SLC36A3_uc003ltv.1_Missense_Mutation_p.L166M|SLC36A3_uc003ltw.1_Missense_Mutation_p.L181M	NM_181774	NP_861439	Q495N2	S36A3_HUMAN	solute carrier family 36, member 3 isoform 2	181	Extracellular (Potential).					integral to membrane				ovary(2)	2		Medulloblastoma(196;0.109)|all_hematologic(541;0.243)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)											0.18209	123.733121	155.606625	61	274	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	150647167	150647167	15092	5	G	T	T	33	33	SLC36A3	T	3	3
GPRC6A	222545	broad.mit.edu	36	6	117220963	117220963	+	Missense_Mutation	SNP	T	A	A			TCGA-12-3651-01	TCGA-12-3651-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr6:117220963T>A	uc003pxj.1	-	c.1816A>T	c.(1816-1818)ATA>TTA	p.I606L	GPRC6A_uc003pxk.1_Missense_Mutation_p.I431L|GPRC6A_uc003pxl.1_Missense_Mutation_p.I535L	NM_148963	NP_683766	Q5T6X5	GPC6A_HUMAN	G protein-coupled receptor, family C, group 6,	606	Helical; Name=1; (Potential).				response to amino acid stimulus		G-protein coupled receptor activity			ovary(4)	4		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0265)|all cancers(137;0.0554)|OV - Ovarian serous cystadenocarcinoma(136;0.07)										0.268817	214.704438	228.159875	75	204	TT		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	117220963	117220963	7004	6	T	A	A	51	51	GPRC6A	A	4	4
TULP4	56995	broad.mit.edu	36	6	158844398	158844398	+	Missense_Mutation	SNP	A	T	T			TCGA-12-3651-01	TCGA-12-3651-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr6:158844398A>T	uc003qrf.1	+	c.3715A>T	c.(3715-3717)ACC>TCC	p.T1239S	TULP4_uc003qrg.1_Intron	NM_020245	NP_064630	Q9NRJ4	TULP4_HUMAN	tubby like protein 4 isoform 1	1239					intracellular signal transduction|regulation of transcription, DNA-dependent|response to nutrient	cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Breast(66;0.000781)|Ovarian(120;0.0308)|Lung SC(201;0.164)|Prostate(117;0.171)		OV - Ovarian serous cystadenocarcinoma(65;1.64e-18)|BRCA - Breast invasive adenocarcinoma(81;2.67e-05)										0.391892	91.261043	92.017554	29	45	AA		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	158844398	158844398	17331	6	A	T	T	6	6	TULP4	T	4	4
OR2H1	26716	broad.mit.edu	36	6	29537688	29537688	+	Missense_Mutation	SNP	T	A	A			TCGA-12-3651-01	TCGA-12-3651-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr6:29537688T>A	uc003nmi.1	+	c.163T>A	c.(163-165)TCT>ACT	p.S55T	OR2H1_uc003nmj.1_Missense_Mutation_p.S55T|OR2H1_uc010jri.1_Intron|OR2H1_uc010jrj.1_Intron|OR2H1_uc010jrk.1_Missense_Mutation_p.S55T	NM_030883	NP_112145	Q9GZK4	OR2H1_HUMAN	olfactory receptor, family 2, subfamily H,	55	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0														0.419134	548.238565	550.738643	184	255	TT		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	29537688	29537688	11407	6	T	A	A	54	54	OR2H1	A	4	4
NQO2	4835	broad.mit.edu	36	6	2962138	2962138	+	Missense_Mutation	SNP	G	A	A			TCGA-12-3651-01	TCGA-12-3651-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr6:2962138G>A	uc003mus.2	+	c.439G>A	c.(439-441)GTA>ATA	p.V147I	NQO2_uc003mut.2_Missense_Mutation_p.V147I	NM_000904	NP_000895	P16083	NQO2_HUMAN	NAD(P)H dehydrogenase, quinone 2	147					oxidation-reduction process	cytoplasm|nucleus	coenzyme binding|dihydronicotinamide riboside quinone reductase activity|electron carrier activity|metal ion binding|NADPH dehydrogenase (quinone) activity			ovary(1)	1	Ovarian(93;0.0412)	all_hematologic(90;0.0895)			Menadione(DB00170)|NADH(DB00157)									0.367347	106.679845	108.193451	36	62	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	2962138	2962138	11017	6	G	A	A	40	40	NQO2	A	1	1
TREML2	79865	broad.mit.edu	36	6	41273838	41273838	+	Silent	SNP	C	T	T			TCGA-12-3651-01	TCGA-12-3651-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr6:41273838C>T	uc010jxm.1	-	c.540G>A	c.(538-540)CTG>CTA	p.L180L		NM_024807	NP_079083	Q5T2D2	TRML2_HUMAN	triggering receptor expressed on myeloid	121	Ig-like V-type.|Extracellular (Potential).				T cell activation	cell surface|integral to membrane|plasma membrane	protein binding|receptor activity			ovary(1)|central_nervous_system(1)	2	Ovarian(28;0.0418)|Colorectal(47;0.196)													0.236364	33.749718	37.242794	13	42	CC		KEEP	---	---	---	---	capture			Silent	SNP	41273838	41273838	17017	6	C	T	T	21	21	TREML2	T	2	2
KLHDC3	116138	broad.mit.edu	36	6	43094271	43094271	+	Silent	SNP	C	T	T			TCGA-12-3651-01	TCGA-12-3651-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr6:43094271C>T	uc003otl.1	+	c.732C>T	c.(730-732)GCC>GCT	p.A244A	KLHDC3_uc003otm.1_Non-coding_Transcript|KLHDC3_uc010jye.1_Silent_p.A244A|KLHDC3_uc010jyf.1_Silent_p.A220A|KLHDC3_uc003otn.1_Silent_p.A128A|KLHDC3_uc003oto.1_Silent_p.A185A	NM_057161	NP_476502	Q9BQ90	KLDC3_HUMAN	kelch domain containing 3	244	Kelch 4.				reciprocal meiotic recombination	cytoplasm|nuclear chromatin	chromatin binding|protein binding				0			Colorectal(64;0.00237)|all cancers(41;0.0034)|COAD - Colon adenocarcinoma(64;0.00473)|OV - Ovarian serous cystadenocarcinoma(102;0.0539)|KIRC - Kidney renal clear cell carcinoma(15;0.133)|Kidney(15;0.188)											0.693966	513.619176	521.395112	161	71	CC		KEEP	---	---	---	---	capture			Silent	SNP	43094271	43094271	8669	6	C	T	T	24	24	KLHDC3	T	2	2
PKHD1	5314	broad.mit.edu	36	6	51906868	51906868	+	Silent	SNP	G	A	A			TCGA-12-3651-01	TCGA-12-3651-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr6:51906868G>A	uc003pah.1	-	c.6120C>T	c.(6118-6120)CAC>CAT	p.H2040H	PKHD1_uc010jzn.1_Silent_p.H65H|PKHD1_uc003pai.1_Silent_p.H2040H	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	2040	Extracellular (Potential).|G8 1.				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			ovary(12)|large_intestine(5)|central_nervous_system(3)	20	Lung NSC(77;0.0605)									1537		OREG0017491	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	0.359942	745.966028	757.839924	248	441	GG		KEEP	---	---	---	---	capture			Silent	SNP	51906868	51906868	12396	6	G	A	A	40	40	PKHD1	A	1	1
PKHD1	5314	broad.mit.edu	36	6	52008431	52008431	+	Missense_Mutation	SNP	G	T	T			TCGA-12-3651-01	TCGA-12-3651-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr6:52008431G>T	uc003pah.1	-	c.3145C>A	c.(3145-3147)CTG>ATG	p.L1049M	PKHD1_uc003pai.1_Missense_Mutation_p.L1049M	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	1049	IPT/TIG 5.|Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			ovary(12)|large_intestine(5)|central_nervous_system(3)	20	Lung NSC(77;0.0605)									1537				0.281139	200.997842	213.102194	79	202	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	52008431	52008431	12396	6	G	T	T	35	35	PKHD1	T	3	3
MDN1	23195	broad.mit.edu	36	6	90410516	90410516	+	Missense_Mutation	SNP	C	T	T			TCGA-12-3651-01	TCGA-12-3651-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr6:90410516C>T	uc003pnn.1	-	c.16720G>A	c.(16720-16722)GCA>ACA	p.A5574T		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	5574	VWFA.				protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)	8		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)										0.298578	171.349084	178.997262	63	148	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	90410516	90410516	9804	6	C	T	T	27	27	MDN1	T	1	1
FOXP2	93986	broad.mit.edu	36	7	114090739	114090739	+	Splice_Site_SNP	SNP	A	G	G			TCGA-12-3651-01	TCGA-12-3651-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr7:114090739A>G	uc003vgz.2	+	c.e16_splice_site			FOXP2_uc003vgu.2_Splice_Site_SNP|FOXP2_uc003vha.2_Splice_Site_SNP|FOXP2_uc003vhb.2_Splice_Site_SNP|FOXP2_uc010ljz.1_Splice_Site_SNP|FOXP2_uc003vhe.1_Splice_Site_SNP	NM_148898	NP_683697			forkhead box P2 isoform II						camera-type eye development|caudate nucleus development|cerebellum development|cerebral cortex development|embryo development|growth|lung alveolus development|negative regulation of gene-specific transcription from RNA polymerase II promoter|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of mesenchymal cell proliferation|post-embryonic development|putamen development|regulation of sequence-specific DNA binding transcription factor activity|righting reflex|skeletal muscle tissue development|smooth muscle tissue development|vocal learning	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			ovary(4)|lung(1)|breast(1)|pancreas(1)	7														0.267606	42.097092	45.559837	19	52	AA		KEEP	---	---	---	---	capture			Splice_Site_SNP	SNP	114090739	114090739	6273	7	A	G	G	7	7	FOXP2	G	5	4
SSPO	23145	broad.mit.edu	36	7	149159215	149159215	+	Silent	SNP	C	A	A			TCGA-12-3651-01	TCGA-12-3651-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr7:149159215C>A	uc010lpk.1	+	c.15198C>A	c.(15196-15198)ACC>ACA	p.T5066T	SSPO_uc003wgh.2_Non-coding_Transcript	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin	5066	CTCK.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)											0.363636	8.501767	8.679518	4	7	CC		KEEP	---	---	---	---	capture			Silent	SNP	149159215	149159215	15705	7	C	A	A	24	24	SSPO	A	3	3
DNAH11	8701	broad.mit.edu	36	7	21822748	21822748	+	Missense_Mutation	SNP	C	T	T			TCGA-12-3651-01	TCGA-12-3651-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr7:21822748C>T	uc003svc.1	+	c.10492C>T	c.(10492-10494)CGC>TGC	p.R3498C		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	3498	AAA 5 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15														0.235669	181.011219	201.060848	74	240	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	21822748	21822748	4781	7	C	T	T	27	27	DNAH11	T	1	1
PKD1L1	168507	broad.mit.edu	36	7	47935472	47935472	+	Missense_Mutation	SNP	G	T	T			TCGA-12-3651-01	TCGA-12-3651-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr7:47935472G>T	uc003tny.1	-	c.914C>A	c.(913-915)CCT>CAT	p.P305H	HUS1_uc003toc.1_Intron	NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	305	Extracellular (Potential).				cell-cell adhesion	integral to membrane				ovary(7)|breast(1)	8														0.12945	55.331799	96.79106	40	269	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	47935472	47935472	12388	7	G	T	T	35	35	PKD1L1	T	3	3
TNRC18	84629	broad.mit.edu	36	7	5330499	5330499	+	Missense_Mutation	SNP	C	T	T			TCGA-12-3651-01	TCGA-12-3651-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr7:5330499C>T	uc003soi.2	-	c.6314G>A	c.(6313-6315)GGG>GAG	p.G2105E		NM_001080495	NP_001073964	O15417	TNC18_HUMAN	trinucleotide repeat containing 18	2105							DNA binding				0		Ovarian(82;0.142)		UCEC - Uterine corpus endometrioid carcinoma (126;0.195)|OV - Ovarian serous cystadenocarcinoma(56;5.32e-15)										0.255814	27.90252	30.230055	11	32	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	5330499	5330499	16880	7	C	T	T	22	22	TNRC18	T	2	2
WBSCR17	64409	broad.mit.edu	36	7	70814974	70814974	+	Silent	SNP	C	T	T			TCGA-12-3651-01	TCGA-12-3651-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr7:70814974C>T	uc003tvy.1	+	c.1704C>T	c.(1702-1704)TGC>TGT	p.C568C	WBSCR17_uc003tvz.1_Silent_p.C267C	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	568	Ricin B-type lectin.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)												0.266355	154.809667	165.343697	57	157	CC		KEEP	---	---	---	---	capture			Silent	SNP	70814974	70814974	17836	7	C	T	T	26	26	WBSCR17	T	2	2
PPP1R9A	55607	broad.mit.edu	36	7	94735881	94735881	+	Missense_Mutation	SNP	C	T	T			TCGA-12-3651-01	TCGA-12-3651-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr7:94735881C>T	uc010lfj.1	+	c.2749C>T	c.(2749-2751)CGC>TGC	p.R917C	PPP1R9A_uc003unp.1_Missense_Mutation_p.R895C|PPP1R9A_uc003unq.1_Missense_Mutation_p.R895C|PPP1R9A_uc003unr.1_De_novo_Start_OutOfFrame	NM_017650	NP_060120	Q9ULJ8	NEB1_HUMAN	protein phosphatase 1, regulatory (inhibitor)	895	Interacts with TGN38 (By similarity).					cell junction|synapse|synaptosome	actin binding			ovary(2)|skin(1)	3	all_cancers(62;9.12e-11)|all_epithelial(64;4.34e-09)		STAD - Stomach adenocarcinoma(171;0.0031)											0.221053	46.928649	53.731885	21	74	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	94735881	94735881	12814	7	C	T	T	19	19	PPP1R9A	T	1	1
ENPP2	5168	broad.mit.edu	36	8	120667709	120667709	+	Missense_Mutation	SNP	T	C	C			TCGA-12-3651-01	TCGA-12-3651-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr8:120667709T>C	uc003yos.1	-	c.1421A>G	c.(1420-1422)AAG>AGG	p.K474R	ENPP2_uc003yot.1_Missense_Mutation_p.K422R|ENPP2_uc010mdd.1_Missense_Mutation_p.K422R|ENPP2_uc003yor.1_Missense_Mutation_p.K61R	NM_006209	NP_006200	Q13822	ENPP2_HUMAN	autotaxin isoform 1 preproprotein	422					cellular component movement|chemotaxis|G-protein coupled receptor protein signaling pathway|immune response|phosphate metabolic process|phosphatidylcholine catabolic process|regulation of cell migration	extracellular space|integral to plasma membrane	alkylglycerophosphoethanolamine phosphodiesterase activity|calcium ion binding|lysophospholipase activity|nucleic acid binding|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|scavenger receptor activity|transcription factor binding|zinc ion binding			ovary(2)|central_nervous_system(2)|large_intestine(1)|kidney(1)	6	Lung NSC(37;5.03e-06)|Ovarian(258;0.0249)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00185)			Melanoma(20;305 879 2501 4818 31020)								0.170543	51.672774	64.912031	22	107	TT		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	120667709	120667709	5323	8	T	C	C	56	56	ENPP2	C	4	4
KCNK9	51305	broad.mit.edu	36	8	140699952	140699952	+	Missense_Mutation	SNP	A	G	G			TCGA-12-3651-01	TCGA-12-3651-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr8:140699952A>G	uc003yvf.1	-	c.856T>C	c.(856-858)TAC>CAC	p.Y286H	KCNK9_uc003yvg.1_Missense_Mutation_p.Y286H|KCNK9_uc003yve.1_Non-coding_Transcript	NM_016601	NP_057685	Q9NPC2	KCNK9_HUMAN	potassium channel, subfamily K, member 9	286	Cytoplasmic (Potential).					integral to membrane|membrane fraction	potassium channel activity|voltage-gated ion channel activity			ovary(2)|lung(1)	3	all_cancers(97;3.94e-14)|all_epithelial(106;4.81e-13)|Lung NSC(106;8.18e-05)|all_lung(105;0.00015)|Ovarian(258;0.00235)|Acute lymphoblastic leukemia(118;0.155)	Ovarian(118;0.134)	BRCA - Breast invasive adenocarcinoma(115;0.0855)											0.354331	133.348988	135.719366	45	82	AA		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	140699952	140699952	8377	8	A	G	G	14	14	KCNK9	G	4	4
ADAM7	8756	broad.mit.edu	36	8	24379163	24379163	+	Missense_Mutation	SNP	C	T	T			TCGA-12-3651-01	TCGA-12-3651-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr8:24379163C>T	uc003xeb.1	+	c.374C>T	c.(373-375)ACG>ATG	p.T125M	ADAM7_uc003xea.1_Missense_Mutation_p.T125M	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	125	Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			kidney(1)	1		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)										0.205128	59.736631	69.170789	24	93	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	24379163	24379163	252	8	C	T	T	19	19	ADAM7	T	1	1
STMN4	81551	broad.mit.edu	36	8	27153467	27153467	+	Missense_Mutation	SNP	C	T	T			TCGA-12-3651-01	TCGA-12-3651-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr8:27153467C>T	uc003xfj.1	-	c.529G>A	c.(529-531)GAA>AAA	p.E177K	STMN4_uc003xfk.1_Missense_Mutation_p.E150K|STMN4_uc010luo.1_Missense_Mutation_p.E150K	NM_030795	NP_110422	Q9H169	STMN4_HUMAN	stathmin-like 4	150	Potential.				intracellular signal transduction					large_intestine(1)|pancreas(1)	2		Ovarian(32;0.00167)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0214)|Epithelial(17;9.82e-10)|Colorectal(74;0.142)										0.276243	136.3739	144.530743	50	131	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	27153467	27153467	15831	8	C	T	T	30	30	STMN4	T	2	2
CHCHD7	79145	broad.mit.edu	36	8	57289780	57289780	+	Silent	SNP	G	A	A			TCGA-12-3651-01	TCGA-12-3651-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr8:57289780G>A	uc003xsv.1	+	c.129G>A	c.(127-129)TCG>TCA	p.S43S	CHCHD7_uc003xss.1_Silent_p.S30S|CHCHD7_uc003xsu.1_Silent_p.S30S|CHCHD7_uc003xst.1_Silent_p.S43S|CHCHD7_uc003xsw.1_Silent_p.S18S|CHCHD7_uc003xsx.1_Silent_p.S18S	NM_001011668	NP_001011671	Q9BUK0	CHCH7_HUMAN	coiled-coil-helix-coiled-coil-helix domain	18	CHCH.										0		all_lung(136;0.0548)|Lung NSC(129;0.0718)|all_epithelial(80;0.125)	Epithelial(17;0.00159)|all cancers(17;0.0112)											0.44	35.722408	35.800694	11	14	GG		KEEP	---	---	---	---	capture			Silent	SNP	57289780	57289780	3455	8	G	A	A	39	39	CHCHD7	A	1	1
RABGAP1	23637	broad.mit.edu	36	9	124786746	124786746	+	Silent	SNP	C	T	T			TCGA-12-3651-01	TCGA-12-3651-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr9:124786746C>T	uc010mwf.1	+	c.96C>T	c.(94-96)TCC>TCT	p.S32S	RABGAP1_uc004bnl.2_Non-coding_Transcript|RABGAP1_uc004bnm.1_Silent_p.S104S	NM_012197	NP_036329	Q9Y3P9	RBGP1_HUMAN	RAB GTPase activating protein 1	104					cell cycle	centrosome|cytosol|microtubule associated complex	Rab GTPase activator activity|tubulin binding			ovary(3)|kidney(2)	5														0.271739	60.955338	65.266343	25	67	CC		KEEP	---	---	---	---	capture			Silent	SNP	124786746	124786746	13423	9	C	T	T	21	21	RABGAP1	T	2	2
GAPVD1	26130	broad.mit.edu	36	9	127104274	127104274	+	Missense_Mutation	SNP	A	G	G			TCGA-12-3651-01	TCGA-12-3651-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr9:127104274A>G	uc004bpp.1	+	c.377A>G	c.(376-378)CAA>CGA	p.Q126R	GAPVD1_uc004bpq.1_Missense_Mutation_p.Q126R|GAPVD1_uc010mwx.1_Missense_Mutation_p.Q126R|GAPVD1_uc004bpr.1_Missense_Mutation_p.Q126R|GAPVD1_uc004bps.1_Missense_Mutation_p.Q126R|GAPVD1_uc010mwy.1_5'UTR|GAPVD1_uc004bpo.2_Missense_Mutation_p.Q126R	NM_015635	NP_056450	Q14C86	GAPD1_HUMAN	GTPase activating protein and VPS9 domains 1	126					endocytosis|regulation of protein transport|regulation of small GTPase mediated signal transduction|signal transduction	cytosol|endosome|membrane	GTPase activating protein binding|GTPase activator activity|guanyl-nucleotide exchange factor activity			ovary(2)|central_nervous_system(1)|skin(1)	4														0.286275	196.171625	206.623074	73	182	AA		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	127104274	127104274	6503	9	A	G	G	5	5	GAPVD1	G	4	4
C9orf72	203228	broad.mit.edu	36	9	27546647	27546647	+	Missense_Mutation	SNP	C	T	T			TCGA-12-3651-01	TCGA-12-3651-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr9:27546647C>T	uc003zqq.1	-	c.1003G>A	c.(1003-1005)GAG>AAG	p.E335K		NM_018325	NP_060795	Q96LT7	CI072_HUMAN	hypothetical protein LOC203228 isoform a	335										ovary(3)|central_nervous_system(1)	4		all_neural(11;7.57e-10)		LUSC - Lung squamous cell carcinoma(38;0.0001)|Lung(218;0.00016)										0.17284	25.254456	33.530858	14	67	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	27546647	27546647	2611	9	C	T	T	31	31	C9orf72	T	1	1
NOL6	65083	broad.mit.edu	36	9	33455291	33455291	+	Missense_Mutation	SNP	C	G	G			TCGA-12-3651-01	TCGA-12-3651-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr9:33455291C>G	uc003zsz.1	-	c.2595G>C	c.(2593-2595)CAG>CAC	p.Q865H	SUGT1P1_uc010mjq.1_Intron|NOL6_uc003zsy.1_5'Flank|NOL6_uc003zta.1_Intron|NOL6_uc010mjv.1_Missense_Mutation_p.Q862H|NOL6_uc003ztb.1_Missense_Mutation_p.Q865H	NM_022917	NP_075068	Q9H6R4	NOL6_HUMAN	nucleolar protein family 6 alpha isoform	865					rRNA processing	condensed nuclear chromosome|nucleolus	RNA binding			ovary(2)	2			LUSC - Lung squamous cell carcinoma(29;0.00788)	GBM - Glioblastoma multiforme(74;0.152)										0.75	10.328832	10.553874	3	1	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	33455291	33455291	10928	9	C	G	G	28	28	NOL6	G	3	3
TRPM3	80036	broad.mit.edu	36	9	72424949	72424949	+	Silent	SNP	G	A	A			TCGA-12-3651-01	TCGA-12-3651-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr9:72424949G>A	uc004aid.1	-	c.1956C>T	c.(1954-1956)GCC>GCT	p.A652A	TRPM3_uc004ahu.1_Silent_p.A482A|TRPM3_uc004ahv.1_Silent_p.A454A|TRPM3_uc004ahw.1_Silent_p.A524A|TRPM3_uc004ahx.1_Silent_p.A511A|TRPM3_uc004ahy.1_Silent_p.A514A|TRPM3_uc004ahz.1_Silent_p.A501A|TRPM3_uc004aia.1_Silent_p.A499A|TRPM3_uc004aib.1_Silent_p.A489A|TRPM3_uc004aic.2_Silent_p.A652A	NM_001007471	NP_066003	Q9HCF6	TRPM3_HUMAN	transient receptor potential cation channel,	677	Cytoplasmic (Potential).					integral to membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(2)	7														0.137681	14.336995	31.886731	19	119	GG		KEEP	---	---	---	---	capture			Silent	SNP	72424949	72424949	17138	9	G	A	A	43	43	TRPM3	A	2	2
TRPM6	140803	broad.mit.edu	36	9	76625123	76625123	+	Missense_Mutation	SNP	T	A	A			TCGA-12-3651-01	TCGA-12-3651-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr9:76625123T>A	uc004ajl.1	-	c.1051A>T	c.(1051-1053)ATT>TTT	p.I351F	TRPM6_uc004ajk.1_Missense_Mutation_p.I346F|TRPM6_uc010mpb.1_Non-coding_Transcript|TRPM6_uc010mpc.1_Missense_Mutation_p.I351F|TRPM6_uc010mpd.1_Missense_Mutation_p.I351F|TRPM6_uc010mpe.1_Intron	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	351	Cytoplasmic (Potential).				protein phosphorylation|response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|central_nervous_system(1)	4										879				0.32243	194.399735	200.391667	69	145	TT		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	76625123	76625123	17141	9	T	A	A	50	50	TRPM6	A	4	4
SYK	6850	broad.mit.edu	36	9	92679782	92679782	+	Silent	SNP	G	A	A			TCGA-12-3651-01	TCGA-12-3651-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr9:92679782G>A	uc004aqz.1	+	c.1290G>A	c.(1288-1290)CCG>CCA	p.P430P	SYK_uc004ara.1_Silent_p.P407P|SYK_uc004arb.1_Silent_p.P407P|SYK_uc004arc.1_Silent_p.P430P	NM_003177	NP_003168	P43405	KSYK_HUMAN	spleen tyrosine kinase isoform 1	430	Protein kinase.				cell proliferation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte cell-cell adhesion|neutrophil chemotaxis|organ morphogenesis|platelet activation|protein complex assembly	cytosol|T cell receptor complex	ATP binding|integrin binding|non-membrane spanning protein tyrosine kinase activity			lung(1)|skin(1)	2										618				0.247191	55.211454	60.385109	22	67	GG		KEEP	---	---	---	---	capture			Silent	SNP	92679782	92679782	15959	9	G	A	A	40	40	SYK	A	1	1
ARHGAP6	395	broad.mit.edu	36	X	11067009	11067009	+	Silent	SNP	C	A	A			TCGA-12-3651-01	TCGA-12-3651-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chrX:11067009C>A	uc004cup.1	-	c.2820G>T	c.(2818-2820)CCG>CCT	p.P940P	ARHGAP6_uc004cuo.1_Non-coding_Transcript|ARHGAP6_uc004cum.1_Silent_p.P737P|ARHGAP6_uc004cun.1_Silent_p.P760P	NM_013427	NP_038286	O43182	RHG06_HUMAN	Rho GTPase activating protein 6 isoform 1	940					actin filament polymerization|activation of phospholipase C activity|negative regulation of focal adhesion assembly|negative regulation of stress fiber assembly|Rho protein signal transduction	actin filament|cytosol	phospholipase activator activity|phospholipase binding|Rho GTPase activator activity|SH3 domain binding|SH3/SH2 adaptor activity			urinary_tract(1)|lung(1)	2														0.5	8.794916	8.794916	4	4	CC		KEEP	---	---	---	---	capture			Silent	SNP	11067009	11067009	901	23	C	A	A	27	27	ARHGAP6	A	3	3
MAP7D2	256714	broad.mit.edu	36	X	19953835	19953835	+	Silent	SNP	C	T	T			TCGA-12-3651-01	TCGA-12-3651-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chrX:19953835C>T	uc010nfo.1	-	c.1164G>A	c.(1162-1164)TTG>TTA	p.L388L	MAP7D2_uc004czq.1_Silent_p.L232L|MAP7D2_uc004czr.1_Silent_p.L347L	NM_152780	NP_689993	Q96T17	MA7D2_HUMAN	MAP7 domain containing 2	347										ovary(2)|breast(1)	3														0.714286	400.854107	407.774231	120	48	CC		KEEP	---	---	---	---	capture			Silent	SNP	19953835	19953835	9651	23	C	T	T	21	21	MAP7D2	T	2	2
EP400	57634	broad.mit.edu	36	12	131082613	131082616	+	Frame_Shift_Del	DEL	AGGA	-	-			TCGA-12-3651-01	TCGA-12-3651-01										Phase_I	Unspecified				Illumina GAIIx	g.chr12:131082613_131082616delAGGA	uc001ujn.1	+	c.5917_5920delAGGA	c.(5917-5922)AGGATCfs	p.R1973fs	EP400_uc001ujl.1_Frame_Shift_Del_p.R1972fs	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	2009_2010	Helicase C-terminal.				histone H2A acetylation|histone H4 acetylation	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)	10	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)										0.40			151	223				---	---	---	---	capture_indel			Frame_Shift_Del	DEL	131082613	131082616	5342	12	AGGA	-	-	15	15	EP400	-	5	5
SP1	6667	broad.mit.edu	36	12	52061714	52061722	+	In_Frame_Del	DEL	AGATCACTC	-	-			TCGA-12-3651-01	TCGA-12-3651-01										Phase_I	Unspecified				Illumina GAIIx	g.chr12:52061714_52061722delAGATCACTC	uc001scw.1	+	c.12_20delAGATCACTC	c.(10-21)CAAGATCACTCC>CAC	p.4_7QDHS>H		NM_138473	NP_612482	P08047	SP1_HUMAN	Sp1 transcription factor isoform a	4_7	Repressor domain.			S->A: Increase in protein stability. No change in sumoylation.	positive regulation by host of viral transcription|positive regulation of transcription from RNA polymerase II promoter, global	cytoplasm|nucleus	double-stranded DNA binding|histone deacetylase binding|promoter binding|protein C-terminus binding|protein homodimerization activity|RNA polymerase II transcription factor activity|sequence-specific DNA binding transcription factor activity|transcription activator activity|transcription factor binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(357;0.00527)						103		OREG0021870	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	0.80			24	6				---	---	---	---	capture_indel			In_Frame_Del	DEL	52061714	52061722	15459	12	AGATCACTC	-	-	3	3	SP1	-	5	5
FBXO31	79791	broad.mit.edu	36	16	85922564	85922565	+	Frame_Shift_Del	DEL	GT	-	-			TCGA-12-3651-01	TCGA-12-3651-01										Phase_I	Unspecified				Illumina GAIIx	g.chr16:85922564_85922565delGT	uc002fjw.1	-	c.1450_1451delAC	c.(1450-1452)ACCfs	p.T484fs	FBXO31_uc002fjv.1_Frame_Shift_Del_p.T376fs	NM_024735	NP_079011	Q5XUX0	FBX31_HUMAN	F-box protein 31	484					cell cycle|cyclin catabolic process|mitotic cell cycle G1/S transition DNA damage checkpoint|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	SCF ubiquitin ligase complex	cyclin binding			lung(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0272)										0.42			8	11				---	---	---	---	capture_indel			Frame_Shift_Del	DEL	85922564	85922565	5978	16	GT	-	-	44	44	FBXO31	-	5	5
APEH	327	broad.mit.edu	36	3	49687739	49687740	+	Frame_Shift_Ins	INS	-	G	G			TCGA-12-3651-01	TCGA-12-3651-01										Phase_I	Unspecified				Illumina GAIIx	g.chr3:49687739_49687740insG	uc010hkw.1	+	c.265_266insG	c.(265-267)CGGfs	p.R89fs	APEH_uc003cxf.1_Frame_Shift_Ins_p.R89fs	NM_001640	NP_001631	P13798	ACPH_HUMAN	N-acylaminoacyl-peptide hydrolase	89					proteolysis	cytoplasm|nuclear membrane	serine-type endopeptidase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;4.53e-05)|Kidney(197;0.00218)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)										0.33			2	4				---	---	---	---	capture_indel			Frame_Shift_Ins	INS	49687739	49687740	778	3	-	G	G	23	23	APEH	G	5	5
FOXP4	116113	broad.mit.edu	36	6	41663583	41663583	+	Frame_Shift_Del	DEL	C	-	-			TCGA-12-3651-01	TCGA-12-3651-01										Phase_I	Unspecified				Illumina GAIIx	g.chr6:41663583_41663583delC	uc003oql.1	+	c.947_947delC	c.(946-948)ACCfs	p.T316fs	FOXP4_uc003oqm.1_Frame_Shift_Del_p.T314fs|FOXP4_uc003oqn.1_Frame_Shift_Del_p.T315fs	NM_001012426	NP_001012426	Q8IVH2	FOXP4_HUMAN	forkhead box P4 isoform 1	316	C2H2-type.				embryonic foregut morphogenesis|heart development|negative regulation of gene-specific transcription from RNA polymerase II promoter|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			breast(1)	1	Ovarian(28;0.0327)|Colorectal(47;0.196)													0.33			2	4				---	---	---	---	capture_indel			Frame_Shift_Del	DEL	41663583	41663583	6275	6	C	-	-	18	18	FOXP4	-	5	5
PLEC	5339	broad.mit.edu	36	8	145078615	145078617	+	In_Frame_Del	DEL	CCT	-	-			TCGA-12-3651-01	TCGA-12-3651-01										Phase_I	Unspecified				Illumina GAIIx	g.chr8:145078615_145078617delCCT	uc003zaf.1	-	c.2327_2329delAGG	c.(2326-2331)GAGGTG>GTG	p.E776del	PLEC_uc003zag.1_In_Frame_Del_p.E617del|PLEC_uc003zah.1_In_Frame_Del_p.E625del|PLEC_uc003zai.1_In_Frame_Del_p.E666del|PLEC_uc003zaj.1_In_Frame_Del_p.E666del|PLEC_uc003zab.1_In_Frame_Del_p.E639del|PLEC_uc003zac.1_In_Frame_Del_p.E643del|PLEC_uc003zad.1_In_Frame_Del_p.E639del|PLEC_uc003zae.1_In_Frame_Del_p.E607del	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin 1 isoform 6	776	Spectrin 2.|Globular 1.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|central_nervous_system(1)	7														0.33			3	6				---	---	---	---	capture_indel			In_Frame_Del	DEL	145078615	145078617	12478	8	CCT	-	-	18	18	PLEC	-	5	5
