Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Genome_Change	Annotation_Transcript	Transcript_Strand	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	i_TCGAscape_Amplification_Peaks	i_TCGAscape_Deletion_Peaks	DrugBank	i_ACHILLES_Top_Genes	i_CCLE_ONCOMAP_overlapping_mutations	i_CCLE_ONCOMAP_total_mutations_in_gene	i_CCLE_SEQ_overlapping_mutations	i_CCLE_SEQ_total_mutations_in_gene	MUTSIG_Significant_Genes	OREGANNO_ID	OREGANNO_Values	i_tumor_f	i_init_t_lod	i_t_lod_fstar	i_t_alt_count	i_t_ref_count	i_normal_best_gt	i_failure_reasons	i_judgement	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	dataset	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context_orig	context65	gene_name	newbase	categ	categ_ignoring_null_categ
RBP3	5949	broad.mit.edu	36	10	48008472	48008472	+	Missense_Mutation	SNP	C	G	G			TCGA-14-2554-01	TCGA-14-2554-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr10:48008472C>G	uc001jez.1	-	c.2412G>C	c.(2410-2412)GAG>GAC	p.E804D		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	804	4 X approximate tandem repeats.|3.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)									0.25	6.918502	7.600938	3	9	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	48008472	48008472	13626	10	C	G	G	28	28	RBP3	G	3	3
PCGF5	84333	broad.mit.edu	36	10	93028047	93028047	+	Silent	SNP	C	T	T			TCGA-14-2554-01	TCGA-14-2554-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr10:93028047C>T	uc001khh.1	+	c.765C>T	c.(763-765)TTC>TTT	p.F255F	PCGF5_uc001khi.1_Silent_p.F255F	NM_032373	NP_115749	Q86SE9	PCGF5_HUMAN	polycomb group ring finger 5	255					regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome	zinc ion binding			lung(1)	1						Colon(178;732 2696 46441 50370)								0.361905	112.32321	114.084638	38	67	CC		KEEP	---	---	---	---	capture			Silent	SNP	93028047	93028047	11997	10	C	T	T	31	31	PCGF5	T	1	1
OR5D13	390142	broad.mit.edu	36	11	55297845	55297845	+	Missense_Mutation	SNP	C	T	T			TCGA-14-2554-01	TCGA-14-2554-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr11:55297845C>T	uc001nhu.1	+	c.356C>T	c.(355-357)GCG>GTG	p.A119V		NM_001001967	NP_001001967	Q8NGL4	OR5DD_HUMAN	olfactory receptor, family 5, subfamily D,	119	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2		all_epithelial(135;0.196)												0.32987	348.104075	357.976325	127	258	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	55297845	55297845	11564	11	C	T	T	27	27	OR5D13	T	1	1
C11orf84	144097	broad.mit.edu	36	11	63342166	63342166	+	Silent	SNP	G	A	A			TCGA-14-2554-01	TCGA-14-2554-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr11:63342166G>A	uc001nxt.1	+	c.441G>A	c.(439-441)CCG>CCA	p.P147P		NM_138471	NP_612480	Q9BUA3	CK084_HUMAN	hypothetical protein LOC144097	147	Pro-rich.										0														0.234043	73.091557	82.233909	33	108	GG		KEEP	---	---	---	---	capture			Silent	SNP	63342166	63342166	1706	11	G	A	A	40	40	C11orf84	A	1	1
CAPN1	823	broad.mit.edu	36	11	64707226	64707226	+	Missense_Mutation	SNP	A	G	G			TCGA-14-2554-01	TCGA-14-2554-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr11:64707226A>G	uc009yqd.1	+	c.319A>G	c.(319-321)ATC>GTC	p.I107V	CAPN1_uc001odf.1_Missense_Mutation_p.I107V|CAPN1_uc001odg.1_Missense_Mutation_p.I107V	NM_005186	NP_005177	P07384	CAN1_HUMAN	calpain 1, large subunit	107	Calpain catalytic.				positive regulation of cell proliferation|proteolysis	cytoplasm|plasma membrane	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity|protein binding			ovary(1)	1		Lung NSC(402;0.094)|Melanoma(852;0.16)												0.297203	224.389745	234.893581	85	201	AA		KEEP	---	---	---	---	capture		Lung(977;0.00168)|LUSC - Lung squamous cell carcinoma(976;0.00813)	Missense_Mutation	SNP	64707226	64707226	2739	11	A	G	G	8	8	CAPN1	G	4	4
ALDH3B2	222	broad.mit.edu	36	11	67189611	67189611	+	Missense_Mutation	SNP	C	T	T			TCGA-14-2554-01	TCGA-14-2554-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr11:67189611C>T	uc001omr.1	-	c.427G>A	c.(427-429)GAC>AAC	p.D143N	ALDH3B2_uc001oms.1_Missense_Mutation_p.D143N|ALDH3B2_uc009ysa.1_Missense_Mutation_p.D143N	NM_000695	NP_001026786	P48448	AL3B2_HUMAN	aldehyde dehydrogenase 3B2	143					alcohol metabolic process|cellular aldehyde metabolic process|lipid metabolic process|oxidation-reduction process		3-chloroallyl aldehyde dehydrogenase activity|aldehyde dehydrogenase			lung(1)|kidney(1)	2					NADH(DB00157)									0.32967	241.173128	248.185828	90	183	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	67189611	67189611	503	11	C	T	T	31	31	ALDH3B2	T	1	1
CCDC60	160777	broad.mit.edu	36	12	118453114	118453114	+	Missense_Mutation	SNP	G	A	A			TCGA-14-2554-01	TCGA-14-2554-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr12:118453114G>A	uc001txe.1	+	c.1414G>A	c.(1414-1416)GCC>ACC	p.A472T		NM_178499	NP_848594	Q8IWA6	CCD60_HUMAN	coiled-coil domain containing 60	472										ovary(2)	2	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)													0.206704	81.782658	96.050426	37	142	GG		KEEP	---	---	---	---	capture		BRCA - Breast invasive adenocarcinoma(302;0.207)	Missense_Mutation	SNP	118453114	118453114	2954	12	G	A	A	38	38	CCDC60	A	1	1
TRHDE	29953	broad.mit.edu	36	12	71301710	71301710	+	Missense_Mutation	SNP	A	G	G			TCGA-14-2554-01	TCGA-14-2554-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr12:71301710A>G	uc001sxa.1	+	c.2452A>G	c.(2452-2454)ATA>GTA	p.I818V		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	818	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)	2														0.592	269.6793	270.605811	74	51	AA		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	71301710	71301710	17023	12	A	G	G	16	16	TRHDE	G	4	4
CLEC4D	338339	broad.mit.edu	36	12	8564184	8564184	+	Silent	SNP	G	A	A			TCGA-14-2554-01	TCGA-14-2554-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr12:8564184G>A	uc001qun.1	+	c.480G>A	c.(478-480)ACG>ACA	p.T160T		NM_080387	NP_525126	Q8WXI8	CLC4D_HUMAN	C-type lectin domain family 4, member D	160	C-type lectin.|Extracellular (Potential).				innate immune response	integral to membrane	sugar binding				0	Lung SC(5;0.184)													0.25625	96.098479	104.722201	41	119	GG		KEEP	---	---	---	---	capture			Silent	SNP	8564184	8564184	3652	12	G	A	A	38	38	CLEC4D	A	1	1
COL4A2	1284	broad.mit.edu	36	13	109875145	109875145	+	Missense_Mutation	SNP	G	A	A			TCGA-14-2554-01	TCGA-14-2554-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr13:109875145G>A	uc001vqx.1	+	c.244G>A	c.(244-246)GGA>AGA	p.G82R		NM_001846	NP_001837	P08572	CO4A2_HUMAN	alpha 2 type IV collagen preproprotein	82					angiogenesis|axon guidance|extracellular matrix organization|negative regulation of angiogenesis	collagen type IV	extracellular matrix structural constituent|protein binding			central_nervous_system(2)|ovary(1)	3	all_cancers(4;2.21e-12)|all_epithelial(4;2.63e-07)|all_lung(23;5.81e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00323)|all_neural(89;0.0565)|Lung SC(71;0.0753)|Medulloblastoma(90;0.0922)	Breast(118;0.212)												0.333333	108.857496	111.639543	38	76	GG		KEEP	---	---	---	---	capture	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.151)		Missense_Mutation	SNP	109875145	109875145	3828	13	G	A	A	43	43	COL4A2	A	2	2
TDRD3	81550	broad.mit.edu	36	13	60001057	60001057	+	Missense_Mutation	SNP	A	G	G			TCGA-14-2554-01	TCGA-14-2554-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr13:60001057A>G	uc010aeg.1	+	c.1697A>G	c.(1696-1698)AAA>AGA	p.K566R	TDRD3_uc010aef.1_Missense_Mutation_p.K298R|TDRD3_uc001vhz.2_Missense_Mutation_p.K473R|TDRD3_uc001via.1_Missense_Mutation_p.K473R|TDRD3_uc001vib.2_Missense_Mutation_p.K472R	NM_030794	NP_110421	Q9H7E2	TDRD3_HUMAN	tudor domain containing 3	473					chromatin modification	cytoplasm|nucleus	chromatin binding|methylated histone residue binding|nucleic acid binding|transcription coactivator activity				0		Prostate(109;0.173)|Breast(118;0.174)				Colon(36;164 906 35820 50723)								0.344444	99.600189	101.522474	31	59	AA		KEEP	---	---	---	---	capture		GBM - Glioblastoma multiforme(99;0.000291)	Missense_Mutation	SNP	60001057	60001057	16259	13	A	G	G	1	1	TDRD3	G	4	4
RNASE10	338879	broad.mit.edu	36	14	20048956	20048956	+	Silent	SNP	G	A	A			TCGA-14-2554-01	TCGA-14-2554-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr14:20048956G>A	uc001vxp.1	+	c.486G>A	c.(484-486)AAG>AAA	p.K162K		NM_001012975	NP_001012993	Q5GAN6	RNS10_HUMAN	ribonuclease, RNase A family, 10 (non-active)	162						extracellular region	nucleic acid binding|pancreatic ribonuclease activity				0	all_cancers(95;0.00123)													0.325301	79.662524	81.928824	27	56	GG		KEEP	---	---	---	---	capture	Epithelial(56;1.81e-07)|all cancers(55;1.86e-06)	GBM - Glioblastoma multiforme(265;0.022)|READ - Rectum adenocarcinoma(17;0.191)	Silent	SNP	20048956	20048956	13877	14	G	A	A	35	35	RNASE10	A	2	2
CKMT1B	1159	broad.mit.edu	36	15	41677807	41677807	+	Missense_Mutation	SNP	T	G	G			TCGA-14-2554-01	TCGA-14-2554-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr15:41677807T>G	uc001zsc.1	+	c.1001T>G	c.(1000-1002)CTG>CGG	p.L334R	PPIP5K1_uc001zsa.2_Intron|CKMT1B_uc001zsd.2_Missense_Mutation_p.L334R|CKMT1B_uc010bdj.1_Non-coding_Transcript	NM_020990	NP_066270	P12532	KCRU_HUMAN	creatine kinase, mitochondrial 1B precursor	334	Phosphagen kinase C-terminal.				creatine metabolic process	mitochondrial inner membrane	ATP binding|creatine kinase activity				0		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)			Creatine(DB00148)									0.396226	200.192735	201.690782	63	96	TT		KEEP	---	---	---	---	capture		GBM - Glioblastoma multiforme(94;3.56e-07)	Missense_Mutation	SNP	41677807	41677807	3586	15	T	G	G	55	55	CKMT1B	G	4	4
CACNG3	10368	broad.mit.edu	36	16	24265611	24265611	+	Silent	SNP	C	T	T			TCGA-14-2554-01	TCGA-14-2554-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr16:24265611C>T	uc002dmf.1	+	c.267C>T	c.(265-267)TAC>TAT	p.Y89Y		NM_006539	NP_006530	O60359	CCG3_HUMAN	voltage-dependent calcium channel gamma-3	89					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity				0														0.290698	65.239412	68.615969	25	61	CC		KEEP	---	---	---	---	capture		GBM - Glioblastoma multiforme(48;0.0809)	Silent	SNP	24265611	24265611	2674	16	C	T	T	19	19	CACNG3	T	1	1
RPGRIP1L	23322	broad.mit.edu	36	16	52229175	52229175	+	Silent	SNP	C	T	T			TCGA-14-2554-01	TCGA-14-2554-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr16:52229175C>T	uc002ehp.1	-	c.3153G>A	c.(3151-3153)CAG>CAA	p.Q1051Q	RPGRIP1L_uc002ehn.1_Silent_p.Q466Q|RPGRIP1L_uc002eho.2_Silent_p.Q1017Q|RPGRIP1L_uc010cbx.1_Silent_p.Q1017Q	NM_015272	NP_056087	Q68CZ1	FTM_HUMAN	RPGRIP1-like isoform a	1051					negative regulation of G-protein coupled receptor protein signaling pathway	centrosome|cilium axoneme|microtubule basal body	thromboxane A2 receptor binding			ovary(1)	1		all_cancers(37;0.0973)												0.356828	234.299887	238.403667	81	146	CC		KEEP	---	---	---	---	capture			Silent	SNP	52229175	52229175	14029	16	C	T	T	28	28	RPGRIP1L	T	2	2
MVD	4597	broad.mit.edu	36	16	87251889	87251889	+	Missense_Mutation	SNP	C	T	T			TCGA-14-2554-01	TCGA-14-2554-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr16:87251889C>T	uc002flg.1	-	c.191G>A	c.(190-192)CGG>CAG	p.R64Q	MVD_uc002flf.1_5'Flank	NM_002461	NP_002452	P53602	MVD1_HUMAN	diphosphomevalonate decarboxylase	64					cholesterol biosynthetic process|positive regulation of cell proliferation	cytosol	ATP binding|diphosphomevalonate decarboxylase activity|Hsp70 protein binding|kinase activity|protein homodimerization activity				0														0.535714	142.877632	142.970868	45	39	CC		KEEP	---	---	---	---	capture		BRCA - Breast invasive adenocarcinoma(80;0.0478)	Missense_Mutation	SNP	87251889	87251889	10388	16	C	T	T	23	23	MVD	T	1	1
SLC43A2	124935	broad.mit.edu	36	17	1425722	1425722	+	Missense_Mutation	SNP	G	C	C			TCGA-14-2554-01	TCGA-14-2554-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr17:1425722G>C	uc002fsu.1	-	c.1648C>G	c.(1648-1650)CTG>GTG	p.L550V	SLC43A2_uc002fsv.1_Missense_Mutation_p.L546V	NM_152346	NP_689559	Q8N370	LAT4_HUMAN	solute carrier family 43, member 2	546					cellular nitrogen compound metabolic process|ion transport	integral to membrane|plasma membrane					0														0.222222	6.38376	7.66983	4	14	GG		KEEP	---	---	---	---	capture		UCEC - Uterine corpus endometrioid carcinoma (25;0.0883)	Missense_Mutation	SNP	1425722	1425722	15130	17	G	C	C	34	34	SLC43A2	C	3	3
HMHA1	23526	broad.mit.edu	36	19	1019628	1019628	+	Silent	SNP	G	A	A			TCGA-14-2554-01	TCGA-14-2554-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr19:1019628G>A	uc002lqz.1	+	c.306G>A	c.(304-306)GAG>GAA	p.E102E	HMHA1_uc002lra.1_5'UTR|HMHA1_uc002lrb.1_5'Flank	NM_012292	NP_036424	Q92619	HMHA1_HUMAN	minor histocompatibility antigen HA-1	102					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding			lung(1)	1		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)												0.25	33.522503	36.705272	14	42	GG		KEEP	---	---	---	---	capture		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)	Silent	SNP	1019628	1019628	7532	19	G	A	A	34	34	HMHA1	A	2	2
CYP4F3	4051	broad.mit.edu	36	19	15621895	15621895	+	Missense_Mutation	SNP	C	T	T			TCGA-14-2554-01	TCGA-14-2554-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr19:15621895C>T	uc002nbj.1	+	c.820C>T	c.(820-822)CGG>TGG	p.R274W	CYP4F3_uc002nbk.1_Missense_Mutation_p.R274W	NM_000896	NP_000887	Q08477	CP4F3_HUMAN	cytochrome P450, family 4, subfamily F,	274					leukotriene metabolic process|oxidation-reduction process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding			ovary(3)	3														0.294372	169.552719	178.271827	68	163	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	15621895	15621895	4355	19	C	T	T	27	27	CYP4F3	T	1	1
ZNF208	7757	broad.mit.edu	36	19	21947003	21947003	+	Nonsense_Mutation	SNP	A	T	T			TCGA-14-2554-01	TCGA-14-2554-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr19:21947003A>T	uc002nqp.1	-	c.2373T>A	c.(2371-2373)TGT>TGA	p.C791*	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)	5		all_lung(12;0.0961)|Lung NSC(12;0.103)												0.281609	135.803757	143.259849	49	125	AA		KEEP	---	---	---	---	capture			Nonsense_Mutation	SNP	21947003	21947003	18357	19	A	T	T	6	6	ZNF208	T	5	4
PIP5K1C	23396	broad.mit.edu	36	19	3604547	3604547	+	Missense_Mutation	SNP	T	C	C			TCGA-14-2554-01	TCGA-14-2554-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr19:3604547T>C	uc002lyj.1	-	c.662A>G	c.(661-663)TAT>TGT	p.Y221C		NM_012398	NP_036530	O60331	PI51C_HUMAN	phosphatidylinositol-4-phosphate 5-kinase, type	221	PIPK.				axon guidance	cytosol|plasma membrane	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding				0		Hepatocellular(1079;0.137)				Esophageal Squamous(135;99 1744 12852 27186 39851)				246				0.304878	69.450824	72.233914	25	57	TT		KEEP	---	---	---	---	capture		UCEC - Uterine corpus endometrioid carcinoma (162;6.95e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0026)|STAD - Stomach adenocarcinoma(1328;0.183)	Missense_Mutation	SNP	3604547	3604547	12365	19	T	C	C	49	49	PIP5K1C	C	4	4
MADCAM1	8174	broad.mit.edu	36	19	449515	449515	+	Silent	SNP	C	A	A			TCGA-14-2554-01	TCGA-14-2554-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr19:449515C>A	uc002los.1	+	c.357C>A	c.(355-357)ACC>ACA	p.T119T	MADCAM1_uc002lot.1_Silent_p.T119T|MADCAM1_uc010drq.1_Silent_p.T24T	NM_130760	NP_570116	Q13477	MADCA_HUMAN	mucosal vascular addressin cell adhesion	119	Extracellular (Potential).|Ig-like 2.				cell adhesion|immune response|regulation of immune response|signal transduction	integral to membrane|membrane fraction|plasma membrane					0		all_cancers(10;4.25e-36)|all_epithelial(18;1.46e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.1e-06)|all_lung(49;1.55e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)												0.204082	21.522403	25.50601	10	39	CC		KEEP	---	---	---	---	capture		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)	Silent	SNP	449515	449515	9528	19	C	A	A	23	23	MADCAM1	A	3	3
EML2	24139	broad.mit.edu	36	19	50819816	50819816	+	Splice_Site_SNP	SNP	C	T	T			TCGA-14-2554-01	TCGA-14-2554-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr19:50819816C>T	uc002pcq.1	-	c.1444_splice	c.e12+1	p.G482_splice	EML2_uc002pcn.1_Splice_Site_SNP_p.G281_splice|EML2_uc002pco.1_Splice_Site_SNP|EML2_uc002pcp.1_Splice_Site_SNP_p.G165_splice|EML2_uc010ekj.1_Intron|EML2_uc010ekk.1_Splice_Site_SNP	NM_012155	NP_036287			echinoderm microtubule associated protein like						sensory perception of sound|visual perception	cytoplasm|intracellular membrane-bounded organelle|microtubule|microtubule associated complex	catalytic activity|protein binding			large_intestine(1)|ovary(1)	2		Ovarian(192;0.179)|all_neural(266;0.224)												0.185185	17.823464	22.84844	10	44	CC		KEEP	---	---	---	---	capture		OV - Ovarian serous cystadenocarcinoma(262;0.00553)|GBM - Glioblastoma multiforme(486;0.131)|Epithelial(262;0.197)	Splice_Site_SNP	SNP	50819816	50819816	5289	19	C	T	T	18	18	EML2	T	5	2
SIGLEC9	27180	broad.mit.edu	36	19	56325095	56325095	+	Silent	SNP	C	A	A			TCGA-14-2554-01	TCGA-14-2554-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr19:56325095C>A	uc002pvu.1	+	c.1339C>A	c.(1339-1341)CGG>AGG	p.R447R		NM_014441	NP_055256	Q9Y336	SIGL9_HUMAN	sialic acid binding Ig-like lectin 9	447	Cytoplasmic (Potential).				cell adhesion|cell surface receptor linked signaling pathway	integral to plasma membrane	sugar binding				0		all_neural(266;0.0529)												0.253623	90.791743	98.374605	35	103	CC		KEEP	---	---	---	---	capture		GBM - Glioblastoma multiforme(134;0.000826)|OV - Ovarian serous cystadenocarcinoma(262;0.00295)	Silent	SNP	56325095	56325095	14810	19	C	A	A	27	27	SIGLEC9	A	3	3
NLRP11	204801	broad.mit.edu	36	19	60992433	60992433	+	Missense_Mutation	SNP	A	T	T			TCGA-14-2554-01	TCGA-14-2554-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr19:60992433A>T	uc002qma.1	-	c.2658T>A	c.(2656-2658)CAT>CAA	p.H886Q	NLRP11_uc002qlz.1_Missense_Mutation_p.H733Q|NLRP11_uc002qmb.1_Missense_Mutation_p.H787Q|NLRP11_uc002qmc.1_Non-coding_Transcript	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	886							ATP binding			ovary(3)|central_nervous_system(1)	4		Colorectal(82;0.0002)												0.240602	154.573144	170.903679	64	202	AA		KEEP	---	---	---	---	capture		GBM - Glioblastoma multiforme(193;0.0325)	Missense_Mutation	SNP	60992433	60992433	10876	19	A	T	T	12	12	NLRP11	T	4	4
XAB2	56949	broad.mit.edu	36	19	7598308	7598308	+	Missense_Mutation	SNP	C	T	T			TCGA-14-2554-01	TCGA-14-2554-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr19:7598308C>T	uc002mgx.1	-	c.343G>A	c.(343-345)GAT>AAT	p.D115N		NM_020196	NP_064581	Q9HCS7	SYF1_HUMAN	XPA binding protein 2	115	HAT 3.				nuclear mRNA splicing, via spliceosome|transcription, DNA-dependent|transcription-coupled nucleotide-excision repair	catalytic step 2 spliceosome|nucleoplasm	protein binding			central_nervous_system(2)|breast(1)|skin(1)	4														0.4	6.579724	6.670842	4	6	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	7598308	7598308	17992	19	C	T	T	32	32	XAB2	T	2	2
PEX14	5195	broad.mit.edu	36	1	10477934	10477934	+	Missense_Mutation	SNP	G	A	A			TCGA-14-2554-01	TCGA-14-2554-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr1:10477934G>A	uc001arn.1	+	c.53G>A	c.(52-54)GGA>GAA	p.G18E	PEX14_uc001arl.2_Non-coding_Transcript|PEX14_uc001arm.1_Non-coding_Transcript|PEX14_uc009vmu.1_Missense_Mutation_p.G18E|PEX14_uc009vmv.1_5'UTR	NM_004565	NP_004556	O75381	PEX14_HUMAN	peroxisomal biogenesis factor 14	18					negative regulation of gene-specific transcription|negative regulation of sequence-specific DNA binding transcription factor activity|protein homooligomerization|protein import into peroxisome matrix|transmembrane transport	integral to membrane|nucleus|peroxisomal membrane|protein complex	protein N-terminus binding|transcription corepressor activity			breast(1)	1	Ovarian(185;0.203)	all_lung(284;6.02e-06)|Lung NSC(185;9.62e-06)|Renal(390;0.000147)|Breast(348;0.000932)|Colorectal(325;0.00215)|Hepatocellular(190;0.00913)|Ovarian(437;0.023)|Myeloproliferative disorder(586;0.0255)										OREG0013090	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	0.293333	57.622382	60.488827	22	53	GG		KEEP	---	---	---	---	capture		UCEC - Uterine corpus endometrioid carcinoma (279;0.0292)|Colorectal(212;9.13e-08)|COAD - Colon adenocarcinoma(227;2.07e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000482)|Kidney(185;0.00174)|KIRC - Kidney renal clear cell carcinoma(229;0.00457)|STAD - Stomach adenocarcinoma(132;0.0249)|READ - Rectum adenocarcinoma(331;0.0419)	Missense_Mutation	SNP	10477934	10477934	12164	1	G	A	A	41	41	PEX14	A	2	2
TCHHL1	126637	broad.mit.edu	36	1	150325327	150325327	+	Silent	SNP	G	A	A			TCGA-14-2554-01	TCGA-14-2554-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr1:150325327G>A	uc001ezo.1	-	c.1455C>T	c.(1453-1455)AAC>AAT	p.N485N		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	485							calcium ion binding			ovary(1)	1	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)													0.350446	431.960163	440.790404	157	291	GG		KEEP	---	---	---	---	capture	LUSC - Lung squamous cell carcinoma(543;0.246)		Silent	SNP	150325327	150325327	16227	1	G	A	A	40	40	TCHHL1	A	1	1
RGS21	431704	broad.mit.edu	36	1	190587890	190587890	+	Missense_Mutation	SNP	C	T	T			TCGA-14-2554-01	TCGA-14-2554-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr1:190587890C>T	uc001gsh.1	+	c.179C>T	c.(178-180)ACG>ATG	p.T60M		NM_001039152	NP_001034241	Q2M5E4	RGS21_HUMAN	regulator of G-protein signaling 21	60	RGS.				negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(1)	1														0.382022	99.229191	100.315397	34	55	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	190587890	190587890	13778	1	C	T	T	19	19	RGS21	T	1	1
FAM58B	339521	broad.mit.edu	36	1	198449854	198449854	+	Missense_Mutation	SNP	C	G	G			TCGA-14-2554-01	TCGA-14-2554-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr1:198449854C>G	uc009wzi.1	+	c.540C>G	c.(538-540)GAC>GAG	p.D180E		NM_001105517	NP_001098987	P0C7Q3	FA58B_HUMAN	family with sequence similarity 58 member B	180											0	Prostate(682;0.19)													0.326087	44.614909	45.846233	15	31	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	198449854	198449854	5813	1	C	G	G	17	17	FAM58B	G	3	3
KCNH1	3756	broad.mit.edu	36	1	209258918	209258918	+	Missense_Mutation	SNP	G	A	A			TCGA-14-2554-01	TCGA-14-2554-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr1:209258918G>A	uc001hib.1	-	c.862C>T	c.(862-864)CGC>TGC	p.R288C	KCNH1_uc001hic.1_Missense_Mutation_p.R288C	NM_172362	NP_758872	O95259	KCNH1_HUMAN	potassium voltage-gated channel, subfamily H,	288	Cytoplasmic (Potential).				myoblast fusion|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	calmodulin binding|delayed rectifier potassium channel activity|two-component sensor activity			ovary(4)|central_nervous_system(1)	5														0.338308	201.892317	206.513388	68	133	GG		KEEP	---	---	---	---	capture		OV - Ovarian serous cystadenocarcinoma(81;0.0109)|all cancers(67;0.141)|Epithelial(68;0.185)	Missense_Mutation	SNP	209258918	209258918	8336	1	G	A	A	39	39	KCNH1	A	1	1
OBSCN	84033	broad.mit.edu	36	1	226546334	226546334	+	Silent	SNP	G	A	A			TCGA-14-2554-01	TCGA-14-2554-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr1:226546334G>A	uc009xez.1	+	c.10452G>A	c.(10450-10452)GGG>GGA	p.G3484G	OBSCN_uc001hsn.1_Silent_p.G3484G|OBSCN_uc001hsq.1_Silent_p.G740G	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	3484	Ig-like 35.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|protein phosphorylation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			large_intestine(7)|breast(5)|ovary(4)|skin(2)|stomach(1)|central_nervous_system(1)|pancreas(1)	21		Prostate(94;0.0405)								4006				0.440476	107.177924	107.433909	37	47	GG		KEEP	---	---	---	---	capture			Silent	SNP	226546334	226546334	11217	1	G	A	A	42	42	OBSCN	A	2	2
OR2T6	254879	broad.mit.edu	36	1	246618142	246618142	+	Missense_Mutation	SNP	G	A	A			TCGA-14-2554-01	TCGA-14-2554-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr1:246618142G>A	uc001iei.1	+	c.610G>A	c.(610-612)GTT>ATT	p.V204I		NM_001005471	NP_001005471	Q8NHC8	OR2T6_HUMAN	olfactory receptor, family 2, subfamily T,	204	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)													0.3	70.981699	74.204	27	63	GG		KEEP	---	---	---	---	capture	OV - Ovarian serous cystadenocarcinoma(106;0.0265)		Missense_Mutation	SNP	246618142	246618142	11435	1	G	A	A	40	40	OR2T6	A	1	1
SLC2A7	155184	broad.mit.edu	36	1	9007713	9007713	+	Missense_Mutation	SNP	T	G	G			TCGA-14-2554-01	TCGA-14-2554-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr1:9007713T>G	uc009vmo.1	-	c.59A>C	c.(58-60)CAG>CCG	p.Q20P		NM_207420	NP_997303	Q6PXP3	GTR7_HUMAN	intestinal facilitative glucose transporter 7	20	Cytoplasmic (Potential).					integral to membrane|plasma membrane	sugar transmembrane transporter activity				0	Ovarian(185;0.112)|all_lung(157;0.185)	all_epithelial(116;1.34e-15)|all_lung(118;9.46e-05)|Lung NSC(185;0.000172)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.00715)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)												0.206897	7.496927	9.861446	6	23	TT		KEEP	---	---	---	---	capture		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.04e-07)|COAD - Colon adenocarcinoma(227;7.66e-05)|Kidney(185;0.000249)|KIRC - Kidney renal clear cell carcinoma(229;0.000911)|STAD - Stomach adenocarcinoma(132;0.00177)|BRCA - Breast invasive adenocarcinoma(304;0.00185)|READ - Rectum adenocarcinoma(331;0.0642)	Missense_Mutation	SNP	9007713	9007713	15047	1	T	G	G	55	55	SLC2A7	G	4	4
APCDD1L	164284	broad.mit.edu	36	20	56469283	56469283	+	Missense_Mutation	SNP	A	T	T			TCGA-14-2554-01	TCGA-14-2554-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr20:56469283A>T	uc002xze.1	-	c.1475T>A	c.(1474-1476)GTT>GAT	p.V492D		NM_153360	NP_699191	Q8NCL9	APCDL_HUMAN	adenomatosis polyposis coli down-regulated	492	Helical; (Potential).					integral to membrane				ovary(1)	1	Lung NSC(12;0.000856)|all_lung(29;0.0025)													0.233333	46.135114	51.991238	21	69	AA		KEEP	---	---	---	---	capture	BRCA - Breast invasive adenocarcinoma(13;5.6e-11)|Epithelial(14;1.67e-07)|all cancers(14;1.48e-06)		Missense_Mutation	SNP	56469283	56469283	776	20	A	T	T	2	2	APCDD1L	T	4	4
LARGE	9215	broad.mit.edu	36	22	32376457	32376457	+	Missense_Mutation	SNP	A	T	T			TCGA-14-2554-01	TCGA-14-2554-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr22:32376457A>T	uc003and.2	-	c.304T>A	c.(304-306)TAC>AAC	p.Y102N	LARGE_uc003ane.2_Missense_Mutation_p.Y102N|LARGE_uc010gwp.1_Missense_Mutation_p.Y102N	NM_004737	NP_598397	O95461	LARGE_HUMAN	like-glycosyltransferase	102	Lumenal (Potential).				glycosphingolipid biosynthetic process|muscle cell homeostasis|N-acetylglucosamine metabolic process|protein glycosylation	integral to Golgi membrane	acetylglucosaminyltransferase activity			ovary(1)|central_nervous_system(1)	2		Lung NSC(1;0.219)				Colon(70;397 1175 4573 19089 45288)								0.304054	121.123736	126.191885	45	103	AA		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	32376457	32376457	8950	22	A	T	T	15	15	LARGE	T	4	4
PSD4	23550	broad.mit.edu	36	2	113671612	113671612	+	Missense_Mutation	SNP	C	T	T			TCGA-14-2554-01	TCGA-14-2554-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr2:113671612C>T	uc002tjc.1	+	c.2387C>T	c.(2386-2388)ACG>ATG	p.T796M	PSD4_uc002tjd.1_Missense_Mutation_p.T417M|PSD4_uc002tje.1_Missense_Mutation_p.T767M|PSD4_uc002tjf.1_Missense_Mutation_p.T417M|PSD4_uc002tjg.1_5'UTR|PSD4_uc002tjh.1_5'Flank	NM_012455	NP_036587	Q8NDX1	PSD4_HUMAN	pleckstrin and Sec7 domain containing 4	796	PH.				regulation of ARF protein signal transduction	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2														0.338235	61.700558	63.275787	23	45	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	113671612	113671612	13102	2	C	T	T	27	27	PSD4	T	1	1
TMEM163	81615	broad.mit.edu	36	2	134932110	134932110	+	Missense_Mutation	SNP	C	T	T			TCGA-14-2554-01	TCGA-14-2554-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr2:134932110C>T	uc002ttx.1	-	c.772G>A	c.(772-774)GTT>ATT	p.V258I	TMEM163_uc002tty.1_Non-coding_Transcript	NM_030923	NP_112185	Q8TC26	TM163_HUMAN	transmembrane protein 163	258	Helical; (Potential).					integral to membrane					0														0.226087	56.495115	64.418686	26	89	CC		KEEP	---	---	---	---	capture		BRCA - Breast invasive adenocarcinoma(221;0.154)	Missense_Mutation	SNP	134932110	134932110	16612	2	C	T	T	19	19	TMEM163	T	1	1
GALNT13	114805	broad.mit.edu	36	2	154810576	154810576	+	Missense_Mutation	SNP	C	T	T			TCGA-14-2554-01	TCGA-14-2554-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr2:154810576C>T	uc002tyt.2	+	c.692C>T	c.(691-693)ACG>ATG	p.T231M	GALNT13_uc002tyr.2_Missense_Mutation_p.T231M|GALNT13_uc010foc.1_Missense_Mutation_p.T50M|GALNT13_uc010fod.1_De_novo_Start_InFrame	NM_052917	NP_443149	Q8IUC8	GLT13_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	231	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(2)|central_nervous_system(1)	5														0.190184	65.429612	80.058803	31	132	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	154810576	154810576	6475	2	C	T	T	19	19	GALNT13	T	1	1
TTN	7273	broad.mit.edu	36	2	179280679	179280679	+	Missense_Mutation	SNP	C	A	A			TCGA-14-2554-01	TCGA-14-2554-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr2:179280679C>A	uc002umr.1	-	c.25128G>T	c.(25126-25128)AGG>AGT	p.R8376S	TTN_uc002ums.1_Intron|TTN_uc010frc.1_Intron|TTN_uc010frd.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.R5037S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9303										ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153										8722				0.354167	135.072561	137.776604	51	93	CC		KEEP	---	---	---	---	capture	OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)		Missense_Mutation	SNP	179280679	179280679	17290	2	C	A	A	30	30	TTN	A	3	3
PDE1A	5136	broad.mit.edu	36	2	182803116	182803116	+	Silent	SNP	A	G	G			TCGA-14-2554-01	TCGA-14-2554-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr2:182803116A>G	uc002uoq.1	-	c.585T>C	c.(583-585)ATT>ATC	p.I195I	PDE1A_uc002uor.1_Silent_p.I179I|PDE1A_uc002uos.1_Silent_p.I195I	NM_005019	NP_005010	P54750	PDE1A_HUMAN	phosphodiesterase 1A, calmodulin-dependent	195	Catalytic (By similarity).				activation of phospholipase C activity|nerve growth factor receptor signaling pathway|platelet activation	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(1)	1														0.320388	103.742703	106.692468	33	70	AA		KEEP	---	---	---	---	capture	OV - Ovarian serous cystadenocarcinoma(117;0.061)		Silent	SNP	182803116	182803116	12054	2	A	G	G	9	9	PDE1A	G	4	4
COL6A3	1293	broad.mit.edu	36	2	237942332	237942332	+	Missense_Mutation	SNP	G	A	A			TCGA-14-2554-01	TCGA-14-2554-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr2:237942332G>A	uc002vwl.2	-	c.4513C>T	c.(4513-4515)CGC>TGC	p.R1505C	COL6A3_uc002vwk.2_Intron|COL6A3_uc002vwm.2_Missense_Mutation_p.R1304C|COL6A3_uc002vwn.2_Missense_Mutation_p.R1305C|COL6A3_uc002vwo.2_Missense_Mutation_p.R1299C	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	1505	VWFA 8.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|pancreas(1)	15		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)												0.313131	78.983183	82.063899	31	68	GG		KEEP	---	---	---	---	capture		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)	Missense_Mutation	SNP	237942332	237942332	3839	2	G	A	A	38	38	COL6A3	A	1	1
RBMS3	27303	broad.mit.edu	36	3	29960721	29960721	+	Missense_Mutation	SNP	T	G	G			TCGA-14-2554-01	TCGA-14-2554-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr3:29960721T>G	uc003cel.1	+	c.1070T>G	c.(1069-1071)ATT>AGT	p.I357S	RBMS3_uc003cek.1_Intron|RBMS3_uc010hfq.1_Intron|RBMS3_uc003cem.1_Missense_Mutation_p.I339S|RBMS3_uc010hfr.1_Intron	NM_001003793	NP_001003793	Q6XE24	RBMS3_HUMAN	RNA binding motif, single stranded interacting	357						cytoplasm	nucleotide binding|RNA binding			central_nervous_system(1)	1		Ovarian(412;0.0956)												0.185897	71.67706	86.110596	29	127	TT		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	29960721	29960721	13612	3	T	G	G	52	52	RBMS3	G	4	4
ITIH1	3697	broad.mit.edu	36	3	52800956	52800956	+	Missense_Mutation	SNP	G	A	A			TCGA-14-2554-01	TCGA-14-2554-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr3:52800956G>A	uc003dfs.2	+	c.2725G>A	c.(2725-2727)GAC>AAC	p.D909N	ITIH1_uc010hmn.1_Non-coding_Transcript|ITIH1_uc003dft.2_3'UTR|ITIH1_uc010hmo.1_Missense_Mutation_p.D463N|ITIH1_uc003dfu.2_Missense_Mutation_p.D275N|ITIH3_uc003dfv.2_5'Flank	NM_002215	NP_002206	P19827	ITIH1_HUMAN	inter-alpha (globulin) inhibitor H1	909	Hyaluronan-binding.				hyaluronan metabolic process|leukocyte activation	extracellular region	calcium ion binding|serine-type endopeptidase inhibitor activity			ovary(3)	3														0.307692	84.964452	88.391427	32	72	GG		KEEP	---	---	---	---	capture		BRCA - Breast invasive adenocarcinoma(193;7.04e-05)|Kidney(197;0.000659)|KIRC - Kidney renal clear cell carcinoma(197;0.000795)|OV - Ovarian serous cystadenocarcinoma(275;0.0498)	Missense_Mutation	SNP	52800956	52800956	8207	3	G	A	A	37	37	ITIH1	A	1	1
IRF2	3660	broad.mit.edu	36	4	185547210	185547210	+	Missense_Mutation	SNP	C	T	T			TCGA-14-2554-01	TCGA-14-2554-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr4:185547210C>T	uc003iwf.2	-	c.746G>A	c.(745-747)CGG>CAG	p.R249Q		NM_002199	NP_002190	P14316	IRF2_HUMAN	interferon regulatory factor 2	249					blood coagulation|cell proliferation|interferon-gamma-mediated signaling pathway|negative regulation of transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	focal adhesion|nucleoplasm	DNA binding|protein binding|RNA polymerase II transcription factor activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1		all_lung(41;7.86e-14)|Lung NSC(41;1.87e-13)|Colorectal(36;0.00146)|Hepatocellular(41;0.00826)|Renal(120;0.00992)|Prostate(90;0.0115)|all_neural(102;0.0573)|all_hematologic(60;0.0592)												0.433333	274.914062	275.722711	91	119	CC		KEEP	---	---	---	---	capture		all cancers(43;3.94e-27)|Epithelial(43;5.3e-24)|OV - Ovarian serous cystadenocarcinoma(60;1.06e-10)|Colorectal(24;7.98e-07)|STAD - Stomach adenocarcinoma(60;3.95e-05)|GBM - Glioblastoma multiforme(59;8.3e-05)|COAD - Colon adenocarcinoma(29;0.000106)|BRCA - Breast invasive adenocarcinoma(30;0.000311)|LUSC - Lung squamous cell carcinoma(40;0.0128)|READ - Rectum adenocarcinoma(43;0.0419)	Missense_Mutation	SNP	185547210	185547210	8131	4	C	T	T	23	23	IRF2	T	1	1
MAN2B2	23324	broad.mit.edu	36	4	6645815	6645815	+	Nonsense_Mutation	SNP	G	A	A			TCGA-14-2554-01	TCGA-14-2554-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr4:6645815G>A	uc003gjf.1	+	c.695G>A	c.(694-696)TGG>TAG	p.W232*	MAN2B2_uc003gje.1_Nonsense_Mutation_p.W232*	NM_015274	NP_056089	Q9Y2E5	MA2B2_HUMAN	mannosidase, alpha, class 2B, member 2	232					mannose metabolic process	extracellular region	alpha-mannosidase activity|carbohydrate binding|zinc ion binding			ovary(2)	2														0.369863	73.500772	74.589149	27	46	GG		KEEP	---	---	---	---	capture			Nonsense_Mutation	SNP	6645815	6645815	9600	4	G	A	A	47	47	MAN2B2	A	5	2
C4orf35	85438	broad.mit.edu	36	4	71236315	71236315	+	Missense_Mutation	SNP	G	A	A			TCGA-14-2554-01	TCGA-14-2554-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr4:71236315G>A	uc003hff.1	+	c.970G>A	c.(970-972)GTT>ATT	p.V324I	C4orf35_uc010ihx.1_Missense_Mutation_p.V324I	NM_033122	NP_149113	Q96KC9	CABS1_HUMAN	testis development protein NYD-SP26	324						flagellum	calcium ion binding				0		all_hematologic(202;0.196)												0.398773	190.987894	192.433376	65	98	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	71236315	71236315	2360	4	G	A	A	40	40	C4orf35	A	1	1
ENAM	10117	broad.mit.edu	36	4	71726638	71726638	+	Missense_Mutation	SNP	C	T	T			TCGA-14-2554-01	TCGA-14-2554-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr4:71726638C>T	uc003hfm.1	+	c.631C>T	c.(631-633)CGC>TGC	p.R211C		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin	211					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3														0.363874	404.580792	410.782067	139	243	CC		KEEP	---	---	---	---	capture	Lung(101;0.235)		Missense_Mutation	SNP	71726638	71726638	5305	4	C	T	T	31	31	ENAM	T	1	1
AFP	174	broad.mit.edu	36	4	74529653	74529653	+	Missense_Mutation	SNP	G	T	T			TCGA-14-2554-01	TCGA-14-2554-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr4:74529653G>T	uc003hha.1	+	c.793G>T	c.(793-795)GTA>TTA	p.V265L	AFP_uc003hgz.1_Missense_Mutation_p.V265L	NM_001134	NP_001125	P02771	FETA_HUMAN	alpha-fetoprotein precursor	265	Albumin 2.				transport		metal ion binding			ovary(1)	1	Breast(15;0.00102)													0.421053	220.766673	221.697804	72	99	GG		KEEP	---	---	---	---	capture	Epithelial(6;2.42e-05)|all cancers(17;0.000268)|OV - Ovarian serous cystadenocarcinoma(6;0.000324)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)		Missense_Mutation	SNP	74529653	74529653	364	4	G	T	T	48	48	AFP	T	3	3
RAD50	10111	broad.mit.edu	36	5	131954995	131954995	+	Missense_Mutation	SNP	A	G	G			TCGA-14-2554-01	TCGA-14-2554-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr5:131954995A>G	uc003kxi.1	+	c.1633A>G	c.(1633-1635)AAA>GAA	p.K545E	RAD50_uc003kxh.1_Missense_Mutation_p.K406E	NM_005732	NP_597816	Q92878	RAD50_HUMAN	RAD50 homolog isoform 1	545	Potential.				DNA duplex unwinding|double-strand break repair via homologous recombination|positive regulation of kinase activity|positive regulation of protein autophosphorylation|reciprocal meiotic recombination|regulation of mitotic recombination|telomere maintenance via telomerase	Mre11 complex|nuclear chromosome, telomeric region|nucleoplasm	ATP binding|DNA binding|nuclease activity|protein binding, bridging|zinc ion binding			lung(2)|ovary(1)|skin(1)	4		all_cancers(142;0.0368)|Breast(839;0.198)								407				0.354839	71.834454	72.984922	22	40	AA		KEEP	---	---	---	---	capture	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)		Missense_Mutation	SNP	131954995	131954995	13444	5	A	G	G	5	5	RAD50	G	4	4
STXBP5	134957	broad.mit.edu	36	6	147673016	147673016	+	Missense_Mutation	SNP	G	T	T			TCGA-14-2554-01	TCGA-14-2554-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr6:147673016G>T	uc003qlz.2	+	c.1021G>T	c.(1021-1023)GAC>TAC	p.D341Y	STXBP5_uc010khz.1_Missense_Mutation_p.D341Y|STXBP5_uc003qlx.2_Non-coding_Transcript|STXBP5_uc003qly.2_Missense_Mutation_p.D12Y	NM_001127715	NP_001121187	Q5T5C0	STXB5_HUMAN	syntaxin binding protein 5 (tomosyn) isoform b	341					exocytosis|positive regulation of exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|nicotinic acetylcholine-gated receptor-channel complex|synaptic vesicle	syntaxin-1 binding				0		Ovarian(120;0.0164)												0.289308	114.945386	121.237444	46	113	GG		KEEP	---	---	---	---	capture		OV - Ovarian serous cystadenocarcinoma(155;1.77e-09)|GBM - Glioblastoma multiforme(68;0.0694)	Missense_Mutation	SNP	147673016	147673016	15876	6	G	T	T	41	41	STXBP5	T	3	3
HIST1H2AA	221613	broad.mit.edu	36	6	25834525	25834525	+	Silent	SNP	C	T	T			TCGA-14-2554-01	TCGA-14-2554-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr6:25834525C>T	uc003nfc.1	-	c.210G>A	c.(208-210)GCG>GCA	p.A70A	HIST1H2BA_uc003nfd.1_5'Flank	NM_170745	NP_734466	Q96QV6	H2A1A_HUMAN	histone cluster 1, H2aa	70					nucleosome assembly	nucleosome|nucleus	DNA binding				0														0.396694	139.089836	140.214429	48	73	CC		KEEP	---	---	---	---	capture			Silent	SNP	25834525	25834525	7413	6	C	T	T	19	19	HIST1H2AA	T	1	1
PPP2R5D	5528	broad.mit.edu	36	6	43084429	43084429	+	Silent	SNP	A	G	G			TCGA-14-2554-01	TCGA-14-2554-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr6:43084429A>G	uc003oth.1	+	c.1047A>G	c.(1045-1047)CAA>CAG	p.Q349Q	MEA1_uc010jyc.1_Intron|PPP2R5D_uc003otg.1_Silent_p.Q317Q|PPP2R5D_uc010jyd.1_Silent_p.Q243Q|PPP2R5D_uc003oti.1_Silent_p.Q198Q|PPP2R5D_uc003otj.1_Intron	NM_006245	NP_006236	Q14738	2A5D_HUMAN	delta isoform of regulatory subunit B56, protein	349					nervous system development|signal transduction	cytoplasm|nucleus|protein phosphatase type 2A complex	protein binding|protein phosphatase type 2A regulator activity			central_nervous_system(1)	1						Melanoma(63;587 1613 29742 31770)								0.433962	80.220915	80.421742	23	30	AA		KEEP	---	---	---	---	capture	Colorectal(64;0.00237)|all cancers(41;0.00411)|COAD - Colon adenocarcinoma(64;0.00473)|OV - Ovarian serous cystadenocarcinoma(102;0.0664)|KIRC - Kidney renal clear cell carcinoma(15;0.133)|Kidney(15;0.188)		Silent	SNP	43084429	43084429	12831	6	A	G	G	4	4	PPP2R5D	G	4	4
MAD2L1BP	9587	broad.mit.edu	36	6	43715997	43715997	+	Missense_Mutation	SNP	C	G	G			TCGA-14-2554-01	TCGA-14-2554-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr6:43715997C>G	uc003ovu.1	+	c.670C>G	c.(670-672)CGA>GGA	p.R224G	MAD2L1BP_uc003ovv.1_Missense_Mutation_p.R192G	NM_001003690	NP_001003690	Q15013	MD2BP_HUMAN	MAD2L1 binding protein isoform 1	192					mitotic cell cycle checkpoint|regulation of exit from mitosis	cytoplasm|nucleus|spindle	protein binding				0	all_cancers(18;9.36e-06)|Lung NSC(15;0.00161)|all_lung(25;0.004)													0.148148	7.445853	10.60243	4	23	CC		KEEP	---	---	---	---	capture	all cancers(41;0.000351)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|STAD - Stomach adenocarcinoma(11;0.0826)|OV - Ovarian serous cystadenocarcinoma(102;0.167)		Missense_Mutation	SNP	43715997	43715997	9526	6	C	G	G	23	23	MAD2L1BP	G	3	3
SUPT3H	8464	broad.mit.edu	36	6	45096316	45096316	+	Missense_Mutation	SNP	C	T	T			TCGA-14-2554-01	TCGA-14-2554-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr6:45096316C>T	uc003oxo.1	-	c.251G>A	c.(250-252)CGG>CAG	p.R84Q	SUPT3H_uc003oxn.1_Missense_Mutation_p.R73Q|SUPT3H_uc003oxp.1_Missense_Mutation_p.R73Q	NM_181356	NP_852001	O75486	SUPT3_HUMAN	suppressor of Ty 3 homolog isoform 2	155					histone deubiquitination|histone H3 acetylation|regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	STAGA complex|transcription factor TFTC complex	DNA binding|RNA polymerase II transcription factor activity|transcription activator activity|transcription coactivator activity|transcription initiation factor activity			ovary(2)|breast(1)	3										2				0.438462	180.174268	180.599436	57	73	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	45096316	45096316	15917	6	C	T	T	23	23	SUPT3H	T	1	1
C7orf66	154907	broad.mit.edu	36	7	108311805	108311805	+	Silent	SNP	G	T	T			TCGA-14-2554-01	TCGA-14-2554-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr7:108311805G>T	uc003vfo.1	-	c.21C>A	c.(19-21)CCC>CCA	p.P7P		NM_001024607	NP_001019778	A4D0T2	CG066_HUMAN	hypothetical protein LOC154907	7						integral to membrane				ovary(2)	2														0.152778	17.666733	25.995037	11	61	GG		KEEP	---	---	---	---	capture			Silent	SNP	108311805	108311805	2519	7	G	T	T	47	47	C7orf66	T	3	3
ABP1	26	broad.mit.edu	36	7	150185080	150185080	+	Missense_Mutation	SNP	C	T	T			TCGA-14-2554-01	TCGA-14-2554-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr7:150185080C>T	uc003wia.1	+	c.589C>T	c.(589-591)CGC>TGC	p.R197C	ABP1_uc003why.1_Missense_Mutation_p.R197C|ABP1_uc003whz.1_Missense_Mutation_p.R197C	NM_001091	NP_001082	P19801	ABP1_HUMAN	amiloride binding protein 1 precursor	197					amine metabolic process|oxidation-reduction process	extracellular space|peroxisome	copper ion binding|diamine oxidase activity|heparin binding|histamine oxidase activity|methylputrescine oxidase activity|primary amine oxidase activity|propane-1,3-diamine oxidase activity|quinone binding			ovary(2)|breast(2)	4	all_neural(206;0.219)				Amiloride(DB00594)|Spermine(DB00127)	Pancreas(195;1227 3054 24912 28503)								0.277419	110.036133	116.899485	43	112	CC		KEEP	---	---	---	---	capture	OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Missense_Mutation	SNP	150185080	150185080	99	7	C	T	T	27	27	ABP1	T	1	1
CDK13	8621	broad.mit.edu	36	7	40005582	40005582	+	Missense_Mutation	SNP	G	A	A			TCGA-14-2554-01	TCGA-14-2554-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr7:40005582G>A	uc003thh.2	+	c.2140G>A	c.(2140-2142)GGT>AGT	p.G714S	CDK13_uc003thi.2_Missense_Mutation_p.G714S	NM_003718	NP_003709	Q14004	CDK13_HUMAN	cell division cycle 2-like 5 isoform 1	714	Protein kinase.|ATP (By similarity).				alternative nuclear mRNA splicing, via spliceosome|hemopoiesis|interspecies interaction between organisms|phosphorylation of RNA polymerase II C-terminal domain|positive regulation of cell proliferation|regulation of mitosis	nuclear cyclin-dependent protein kinase holoenzyme complex|nuclear speck	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			lung(2)|ovary(1)|skin(1)	4									p.G714S(ACCMESO1-Tumor)	238				0.268293	156.432285	166.36788	55	150	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	40005582	40005582	3258	7	G	A	A	35	35	CDK13	A	2	2
POM121L12	285877	broad.mit.edu	36	7	53071667	53071667	+	Missense_Mutation	SNP	C	T	T			TCGA-14-2554-01	TCGA-14-2554-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr7:53071667C>T	uc003tpz.1	+	c.809C>T	c.(808-810)GCG>GTG	p.A270V		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	hypothetical protein LOC285877	270											0														0.235294	85.823832	96.716109	40	130	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	53071667	53071667	12669	7	C	T	T	27	27	POM121L12	T	1	1
EGFR	1956	broad.mit.edu	36	7	55200537	55200537	+	Missense_Mutation	SNP	G	T	T			TCGA-14-2554-01	TCGA-14-2554-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr7:55200537G>T	uc003tqk.1	+	c.1793G>T	c.(1792-1794)GGA>GTA	p.G598V	EGFR_uc003tqi.1_Missense_Mutation_p.G598V|EGFR_uc003tqj.1_Missense_Mutation_p.G598V|EGFR_uc010kzg.1_Missense_Mutation_p.G553V|EGFR_uc003tqn.1_Non-coding_Transcript	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	598	Approximate.|Extracellular (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity	p.G598V(16)		lung(8200)|central_nervous_system(103)|upper_aerodigestive_tract(37)|prostate(32)|ovary(31)|thyroid(23)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|stomach(6)|urinary_tract(6)|skin(5)|adrenal_gland(5)|kidney(4)|soft_tissue(4)|bone(3)|NS(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)|pancreas(1)	8515	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)				Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)			8		608	TCGA GBM(3;<1E-8)|TSP Lung(4;<1E-8)			0.302374	699.762014	733.583843	293	676	GG		KEEP	---	---	---	---	capture	GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Missense_Mutation	SNP	55200537	55200537	5156	7	G	T	T	41	41	EGFR	T	3	3
CYP3A4	1576	broad.mit.edu	36	7	99204060	99204060	+	Missense_Mutation	SNP	C	T	T			TCGA-14-2554-01	TCGA-14-2554-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr7:99204060C>T	uc003urv.1	-	c.523G>A	c.(523-525)GTC>ATC	p.V175I	CYP3A4_uc003urw.1_Missense_Mutation_p.V175I	NM_017460	NP_059488	P08684	CP3A4_HUMAN	cytochrome P450, subfamily IIIA, polypeptide 4	175					alkaloid catabolic process|androgen metabolic process|exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid catabolic process|vitamin D metabolic process|xenobiotic metabolic process	cell surface|endoplasmic reticulum membrane|integral to membrane|microsome	albendazole monooxygenase activity|caffeine oxidase activity|electron carrier activity|enzyme binding|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen|oxygen binding|quinine 3-monooxygenase activity|steroid binding|taurochenodeoxycholate 6alpha-hydroxylase activity|testosterone 6-beta-hydroxylase activity|vitamin D 24-hydroxylase activity|vitamin D3 25-hydroxylase activity			central_nervous_system(3)|ovary(1)	4	Lung NSC(181;0.0144)|Esophageal squamous(72;0.0166)|all_lung(186;0.0228)				Albendazole(DB00518)|Alclometasone(DB00240)|Alfentanil(DB00802)|Alfuzosin(DB00346)|Aliskiren(DB01258)|Almotriptan(DB00918)|Alosetron(DB00969)|Alprazolam(DB00404)|Amlodipine(DB00381)|Amprenavir(DB00701)|Aprepitant(DB00673)|Aripiprazole(DB01238)|Astemizole(DB00637)|Atazanavir(DB01072)|Atorvastatin(DB01076)|Benazepril(DB00542)|Bepridil(DB01244)|Betamethasone(DB00443)|Bexarotene(DB00307)|Bortezomib(DB00188)|Bosentan(DB00559)|Bromocriptine(DB01200)|Budesonide(DB01222)|Bupivacaine(DB00297)|Buprenorphine(DB00921)|Buspirone(DB00490)|Busulfan(DB01008)|Carbamazepine(DB00564)|Cevimeline(DB00185)|Chlorpheniramine(DB01114)|Ciclesonide(DB01410)|Cilostazol(DB01166)|Cinacalcet(DB01012)|Cisapride(DB00604)|Clarithromycin(DB01211)|Clindamycin(DB01190)|Clofibrate(DB00636)|Clonazepam(DB01068)|Clopidogrel(DB00758)|Cocaine(DB00907)|Conivaptan(DB00872)|Conjugated Estrogens(DB00286)|Cyproterone(DB04839)|Darifenacin(DB00496)|Darunavir(DB01264)|Dasatinib(DB01254)|Delavirdine(DB00705)|Desogestrel(DB00304)|Dexamethasone(DB01234)|Diazepam(DB00829)|Dihydroergotamine(DB00320)|Diltiazem(DB00343)|Diphenhydramine(DB01075)|Disopyramide(DB00280)|Dofetilide(DB00204)|Dolasetron(DB00757)|Domperidone(DB01184)|Donepezil(DB00843)|Doxorubicin(DB00997)|Drospirenone(DB01395)|Dutasteride(DB01126)|Efavirenz(DB00625)|Eletriptan(DB00216)|Enalapril(DB00584)|Epirubicin(DB00445)|Eplerenone(DB00700)|Ergotamine(DB00696)|Erlotinib(DB00530)|Erythromycin(DB00199)|Escitalopram(DB01175)|Esomeprazole(DB00736)|Estazolam(DB01215)|Eszopiclone(DB00402)|Ethinyl Estradiol(DB00977)|Ethosuximide(DB00593)|Etonogestrel(DB00294)|Etoposide(DB00773)|Etoricoxib(DB01628)|Exemestane(DB00990)|Felodipine(DB01023)|Fentanyl(DB00813)|Fexofenadine(DB00950)|Finasteride(DB01216)|Fluconazole(DB00196)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Fosamprenavir(DB01319)|Fulvestrant(DB00947)|Galantamine(DB00674)|Gefitinib(DB00317)|Gemfibrozil(DB01241)|Granisetron(DB00889)|Grepafloxacin(DB00365)|Halofantrine(DB01218)|Hydrocodone(DB00956)|Hydrocortamate(DB00769)|Hydrocortisone(DB00741)|Hydromorphone(DB00327)|Imatinib(DB00619)|Indinavir(DB00224)|Ipratropium(DB00332)|Irinotecan(DB00762)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Isradipine(DB00270)|Itraconazole(DB01167)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lercanidipine(DB00528)|Letrozole(DB01006)|Levobupivacaine(DB01002)|Levomethadyl Acetate(DB01227)|Levothyroxine(DB00451)|Lomustine(DB01206)|Loperamide(DB00836)|Lopinavir(DB01601)|Loratadine(DB00455)|Losartan(DB00678)|Lovastatin(DB00227)|Maraviroc(DB04835)|Marinol(DB00470)|Mebendazole(DB00643)|Medroxyprogesterone(DB00603)|Methadone(DB00333)|Methylprednisolone(DB00959)|Metyrapone(DB01011)|Mibefradil(DB01388)|Midazolam(DB00683)|Mifepristone(DB00834)|Mirtazapine(DB00370)|Modafinil(DB00745)|Mometasone(DB00764)|Montelukast(DB00471)|Nateglinide(DB00731)|Nefazodone(DB01149)|Nelfinavir(DB00220)|Nevirapine(DB00238)|Nicardipine(DB00622)|Nifedipine(DB01115)|Nimodipine(DB00393)|Nisoldipine(DB00401)|Nitrendipine(DB01054)|Norethindrone(DB00717)|Norgestrel(DB00506)|Nystatin(DB00646)|Ondansetron(DB00904)|Oxybutynin(DB01062)|Paclitaxel(DB01229)|Paliperidone(DB01267)|Palonosetron(DB00377)|Pantoprazole(DB00213)|Paricalcitol(DB00910)|Phenmetrazine(DB00830)|Pimecrolimus(DB00337)|Pimozide(DB01100)|Pioglitazone(DB01132)|Posaconazole(DB01263)|Pranlukast(DB01411)|Prednisolone(DB00860)|Prednisone(DB00635)|Prochlorperazine(DB00433)|Quetiapine(DB01224)|Quinapril(DB00881)|Quinine(DB00468)|Rabeprazole(DB01129)|Ranolazine(DB00243)|Reboxetine(DB00234)|Retapamulin(DB01256)|Rifabutin(DB00615)|Rifampin(DB01045)|Rimonabant(DB06155)|Ritonavir(DB00503)|Rofecoxib(DB00533)|Roxithromycin(DB00778)|Salmeterol(DB00938)|Saquinavir(DB01232)|Sertindole(DB06144)|Sibutramine(DB01105)|Simvastatin(DB00641)|Sirolimus(DB00877)|Sitagliptin(DB01261)|Solifenacin(DB01591)|Sorafenib(DB00398)|Sunitinib(DB01268)|Tacrolimus(DB00864)|Tadalafil(DB00820)|Tamoxifen(DB00675)|Telithromycin(DB00976)|Terconazole(DB00251)|Terfenadine(DB00342)|Testosterone(DB00624)|Tiagabine(DB00906)|Ticlopidine(DB00208)|Tinidazole(DB00911)|Tiotropium(DB01409)|Tipranavir(DB00932)|Toremifene(DB00539)|Triazolam(DB00897)|Trimetrexate(DB01157)|Troglitazone(DB00197)|Valdecoxib(DB00580)|Vardenafil(DB00862)|Vinblastine(DB00570)|Vincristine(DB00541)|Vindesine(DB00309)|Vinorelbine(DB00361)|Voriconazole(DB00582)|Zaleplon(DB00962)|Zileuton(DB00744)|Ziprasidone(DB00246)|Zolpidem(DB00425)|Zonisamide(DB00909)				p.V175I(KASUMI2-Tumor)	219				0.262931	155.79377	167.57232	61	171	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	99204060	99204060	4343	7	C	T	T	19	19	CYP3A4	T	1	1
TM7SF4	81501	broad.mit.edu	36	8	105430535	105430535	+	Silent	SNP	C	T	T			TCGA-14-2554-01	TCGA-14-2554-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr8:105430535C>T	uc003ylx.1	+	c.579C>T	c.(577-579)GTC>GTT	p.V193V		NM_030788	NP_110415	Q9H295	TM7S4_HUMAN	dendritic cell-specific transmembrane protein	193					osteoclast differentiation	cell surface|integral to membrane|plasma membrane				pancreas(2)|large_intestine(1)|ovary(1)	4														0.338583	235.255054	241.115087	86	168	CC		KEEP	---	---	---	---	capture	OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)		Silent	SNP	105430535	105430535	16506	8	C	T	T	30	30	TM7SF4	T	2	2
MAPK15	225689	broad.mit.edu	36	8	144873627	144873627	+	Silent	SNP	G	A	A			TCGA-14-2554-01	TCGA-14-2554-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr8:144873627G>A	uc003yzj.1	+	c.708G>A	c.(706-708)CCG>CCA	p.P236P		NM_139021	NP_620590	Q8TD08	MK15_HUMAN	mitogen-activated protein kinase 15	236	Protein kinase.				protein autophosphorylation	extracellular region	ATP binding|MAP kinase activity|SH3 domain binding			lung(2)	2	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)								p.P236P(SW48-Tumor)	103				0.214286	25.776105	29.993394	12	44	GG		KEEP	---	---	---	---	capture	OV - Ovarian serous cystadenocarcinoma(54;3.38e-41)|Epithelial(56;6.8e-40)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.146)		Silent	SNP	144873627	144873627	9660	8	G	A	A	38	38	MAPK15	A	1	1
BSPRY	54836	broad.mit.edu	36	9	115162789	115162789	+	Missense_Mutation	SNP	G	A	A			TCGA-14-2554-01	TCGA-14-2554-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr9:115162789G>A	uc004bhg.2	+	c.482G>A	c.(481-483)CGC>CAC	p.R161H	BSPRY_uc010muw.1_Missense_Mutation_p.R161H	NM_017688	NP_060158	Q5W0U4	BSPRY_HUMAN	B-box and SPRY domain containing	161					calcium ion transport	cytoplasm|membrane	zinc ion binding			breast(1)	1														0.47619	27.846192	27.856653	10	11	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	115162789	115162789	1564	9	G	A	A	38	38	BSPRY	A	1	1
SARDH	1757	broad.mit.edu	36	9	135587530	135587530	+	Missense_Mutation	SNP	G	C	C			TCGA-14-2554-01	TCGA-14-2554-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr9:135587530G>C	uc004cep.2	-	c.346C>G	c.(346-348)CTG>GTG	p.L116V	SARDH_uc004ceo.1_Missense_Mutation_p.L116V	NM_007101	NP_009032	Q9UL12	SARDH_HUMAN	sarcosine dehydrogenase precursor	116					glycine catabolic process|oxidation-reduction process	mitochondrial matrix	aminomethyltransferase activity|sarcosine dehydrogenase activity				0														0.230769	7.115676	8.991739	6	20	GG		KEEP	---	---	---	---	capture		OV - Ovarian serous cystadenocarcinoma(145;3.21e-07)|Epithelial(140;2.37e-06)|all cancers(34;2.75e-05)	Missense_Mutation	SNP	135587530	135587530	14322	9	G	C	C	34	34	SARDH	C	3	3
SARDH	1757	broad.mit.edu	36	9	135589082	135589082	+	Missense_Mutation	SNP	G	C	C			TCGA-14-2554-01	TCGA-14-2554-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr9:135589082G>C	uc004cep.2	-	c.35C>G	c.(34-36)GCT>GGT	p.A12G	SARDH_uc004ceo.1_Missense_Mutation_p.A12G	NM_007101	NP_009032	Q9UL12	SARDH_HUMAN	sarcosine dehydrogenase precursor	12					glycine catabolic process|oxidation-reduction process	mitochondrial matrix	aminomethyltransferase activity|sarcosine dehydrogenase activity				0														0.25	6.823414	7.502549	3	9	GG		KEEP	---	---	---	---	capture		OV - Ovarian serous cystadenocarcinoma(145;3.21e-07)|Epithelial(140;2.37e-06)|all cancers(34;2.75e-05)	Missense_Mutation	SNP	135589082	135589082	14322	9	G	C	C	34	34	SARDH	C	3	3
SNAPC4	6621	broad.mit.edu	36	9	138392695	138392695	+	Missense_Mutation	SNP	C	G	G			TCGA-14-2554-01	TCGA-14-2554-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr9:138392695C>G	uc004chh.1	-	c.3405G>C	c.(3403-3405)CAG>CAC	p.Q1135H		NM_003086	NP_003077	Q5SXM2	SNPC4_HUMAN	small nuclear RNA activating complex,	1135	Pro-rich.				regulation of transcription, DNA-dependent|snRNA transcription from RNA polymerase II promoter|snRNA transcription from RNA polymerase III promoter	snRNA-activating protein complex	DNA binding|sequence-specific DNA binding transcription factor activity				0		Myeloproliferative disorder(178;0.0511)												0.25	6.371723	7.301349	4	12	CC		KEEP	---	---	---	---	capture		OV - Ovarian serous cystadenocarcinoma(145;5.31e-06)|Epithelial(140;7.13e-06)	Missense_Mutation	SNP	138392695	138392695	15337	9	C	G	G	28	28	SNAPC4	G	3	3
ELAVL2	1993	broad.mit.edu	36	9	23691591	23691591	+	Missense_Mutation	SNP	C	A	A			TCGA-14-2554-01	TCGA-14-2554-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr9:23691591C>A	uc003zpu.1	-	c.499G>T	c.(499-501)GGT>TGT	p.G167C	ELAVL2_uc003zps.1_Missense_Mutation_p.G167C|ELAVL2_uc003zpt.1_Missense_Mutation_p.G167C|ELAVL2_uc003zpv.1_Missense_Mutation_p.G167C|ELAVL2_uc003zpw.1_Missense_Mutation_p.G167C	NM_004432	NP_004423	Q12926	ELAV2_HUMAN	ELAV (embryonic lethal, abnormal vision,	167	RRM 2.				regulation of transcription, DNA-dependent		mRNA 3'-UTR binding|nucleotide binding|protein binding			ovary(2)|central_nervous_system(1)	3														0.473684	124.85132	124.909552	45	50	CC		KEEP	---	---	---	---	capture		GBM - Glioblastoma multiforme(1;2.18e-156)|Lung(42;2.15e-28)|LUSC - Lung squamous cell carcinoma(38;1.02e-19)	Missense_Mutation	SNP	23691591	23691591	5241	9	C	A	A	22	22	ELAVL2	A	3	3
TMEM215	401498	broad.mit.edu	36	9	32774490	32774490	+	Silent	SNP	C	T	T			TCGA-14-2554-01	TCGA-14-2554-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr9:32774490C>T	uc003zri.2	+	c.309C>T	c.(307-309)TCC>TCT	p.S103S	TMEM215_uc010mjl.1_Silent_p.S103S	NM_212558	NP_997723	Q68D42	TM215_HUMAN	transmembrane protein 215	103						integral to membrane					0														0.266667	84.352515	90.249623	32	88	CC		KEEP	---	---	---	---	capture			Silent	SNP	32774490	32774490	16674	9	C	T	T	23	23	TMEM215	T	1	1
THOC2	57187	broad.mit.edu	36	X	122627199	122627199	+	Missense_Mutation	SNP	C	T	T			TCGA-14-2554-01	TCGA-14-2554-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chrX:122627199C>T	uc004etu.1	-	c.1361G>A	c.(1360-1362)CGC>CAC	p.R454H	THOC2_uc004ett.1_Missense_Mutation_p.R339H	NM_001081550	NP_001075019	Q8NI27	THOC2_HUMAN	THO complex 2 isoform 1	454					intronless viral mRNA export from host nucleus|mRNA processing|RNA splicing	THO complex part of transcription export complex	protein binding|RNA binding			ovary(3)	3														0.146617	62.343234	94.272868	39	227	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	122627199	122627199	16393	23	C	T	T	27	27	THOC2	T	1	1
STAG2	10735	broad.mit.edu	36	X	123043032	123043032	+	Missense_Mutation	SNP	C	A	A			TCGA-14-2554-01	TCGA-14-2554-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chrX:123043032C>A	uc004eua.1	+	c.2897C>A	c.(2896-2898)ACA>AAA	p.T966K	STAG2_uc004etz.2_Missense_Mutation_p.T966K|STAG2_uc004eub.1_Missense_Mutation_p.T966K|STAG2_uc004euc.1_Missense_Mutation_p.T966K|STAG2_uc004eud.1_Missense_Mutation_p.T966K|STAG2_uc004eue.1_Missense_Mutation_p.T966K	NM_001042749	NP_001036215	Q8N3U4	STAG2_HUMAN	stromal antigen 2 isoform a	966					cell division|meiosis|mitotic metaphase/anaphase transition|mitotic prometaphase|negative regulation of DNA endoreduplication|sister chromatid cohesion	chromatin|chromosome, centromeric region|nucleoplasm	protein binding			ovary(4)|skin(1)	5														0.250847	182.652541	199.277541	74	221	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	123043032	123043032	15761	23	C	A	A	17	17	STAG2	A	3	3
ODZ1	10178	broad.mit.edu	36	X	123698640	123698640	+	Missense_Mutation	SNP	C	A	A			TCGA-14-2554-01	TCGA-14-2554-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chrX:123698640C>A	uc010nqy.1	-	c.624G>T	c.(622-624)AAG>AAT	p.K208N	ODZ1_uc004euj.1_Missense_Mutation_p.K208N	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1	208	Teneurin N-terminal.|Cytoplasmic (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	22										623				0.29661	175.33853	184.081775	70	166	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	123698640	123698640	11239	23	C	A	A	28	28	ODZ1	A	3	3
FLNA	2316	broad.mit.edu	36	X	153234913	153234913	+	Silent	SNP	C	T	T			TCGA-14-2554-01	TCGA-14-2554-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chrX:153234913C>T	uc004fkk.2	-	c.5967G>A	c.(5965-5967)CCG>CCA	p.P1989P	FLNA_uc004fki.2_Silent_p.P32P|FLNA_uc010nuu.1_Silent_p.P1981P	NM_001110556	NP_001104026	P21333	FLNA_HUMAN	filamin A, alpha isoform 2	1989	Filamin 18.				actin crosslink formation|actin cytoskeleton reorganization|cell junction assembly|cytoplasmic sequestering of protein|establishment of protein localization|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|negative regulation of protein catabolic process|negative regulation of sequence-specific DNA binding transcription factor activity|platelet activation|platelet degranulation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription factor import into nucleus|protein localization at cell surface|protein stabilization|receptor clustering	actin cytoskeleton|cell cortex|cytosol|extracellular region|nucleus|plasma membrane	actin filament binding|Fc-gamma receptor I complex binding|glycoprotein binding|GTP-Ral binding|protein homodimerization activity|Rac GTPase binding|signal transducer activity|transcription factor binding			breast(6)	6	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)									518				0.301802	160.037279	167.831617	67	155	CC		KEEP	---	---	---	---	capture			Silent	SNP	153234913	153234913	6175	23	C	T	T	27	27	FLNA	T	1	1
F8	2157	broad.mit.edu	36	X	153838460	153838460	+	Missense_Mutation	SNP	C	A	A			TCGA-14-2554-01	TCGA-14-2554-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chrX:153838460C>A	uc004fmt.1	-	c.1718G>T	c.(1717-1719)TGC>TTC	p.C573F		NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	573	F5/8 type A 2.|Plastocyanin-like 3.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|oxidation-reduction process|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)					359				0.229935	260.567243	291.350998	106	355	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	153838460	153838460	5544	23	C	A	A	25	25	F8	A	3	3
MAGEB1	4112	broad.mit.edu	36	X	30179233	30179233	+	Missense_Mutation	SNP	G	T	T			TCGA-14-2554-01	TCGA-14-2554-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chrX:30179233G>T	uc004dcc.1	+	c.702G>T	c.(700-702)GAG>GAT	p.E234D	MAGEB1_uc004dcd.1_Missense_Mutation_p.E234D|MAGEB1_uc004dce.1_Missense_Mutation_p.E234D|MAGEB1_uc010ngh.1_Missense_Mutation_p.E234D	NM_002363	NP_803134	P43366	MAGB1_HUMAN	melanoma antigen family B, 1	234	MAGE.										0														0.262626	64.704591	69.751245	26	73	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	30179233	30179233	9553	23	G	T	T	34	34	MAGEB1	T	3	3
MXRA5	25878	broad.mit.edu	36	X	3248673	3248673	+	Missense_Mutation	SNP	T	C	C			TCGA-14-2554-01	TCGA-14-2554-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chrX:3248673T>C	uc004crg.2	-	c.5053A>G	c.(5053-5055)AGT>GGT	p.S1685G		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican	1685						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)	7		all_lung(23;0.00031)|Lung NSC(23;0.000946)												0.267974	619.52937	656.714818	205	560	TT		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	3248673	3248673	10397	23	T	C	C	53	53	MXRA5	C	4	4
FAM47A	158724	broad.mit.edu	36	X	34060099	34060099	+	Missense_Mutation	SNP	C	T	T			TCGA-14-2554-01	TCGA-14-2554-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chrX:34060099C>T	uc004ddg.1	-	c.218G>A	c.(217-219)CGT>CAT	p.R73H		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	73										ovary(4)|central_nervous_system(1)	5														0.292683	190.10807	199.572797	72	174	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	34060099	34060099	5790	23	C	T	T	19	19	FAM47A	T	1	1
ARHGEF9	23229	broad.mit.edu	36	X	62842987	62842987	+	Missense_Mutation	SNP	G	T	T			TCGA-14-2554-01	TCGA-14-2554-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chrX:62842987G>T	uc004dvl.2	-	c.257C>A	c.(256-258)CCC>CAC	p.P86H	ARHGEF9_uc004dvn.1_Missense_Mutation_p.P93H|ARHGEF9_uc004dvj.1_5'UTR|ARHGEF9_uc004dvk.1_5'UTR|ARHGEF9_uc004dvm.1_Missense_Mutation_p.P65H	NM_015185	NP_056000	O43307	ARHG9_HUMAN	Cdc42 guanine exchange factor 9	86					apoptosis|induction of apoptosis by extracellular signals|ion transmembrane transport|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol	Rho guanyl-nucleotide exchange factor activity			ovary(5)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	8														0.178571	9.762689	12.482129	5	23	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	62842987	62842987	927	23	G	T	T	43	43	ARHGEF9	T	3	3
