Extract Name	Hybridization Name	Data File	Comment [TCGA Archive Name]	Comment [TCGA Data Level]	Comment [TCGA Include for Analysis]	Protocol REF	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
TCGA-01-0637-11A-01R-0362-01	BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_F09_298090	BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_F09_298090.level3.data.txt	broad.mit.edu_OV.HT_HG-U133A.Level_3.9.1007.0	Level_3	yes	broad.mit.edu:mirror_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:29	Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_2012102400	OV-Normal.transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data.data.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_OV-Normal.Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data.Level_3.2012102400.1.0	yes
TCGA-01-0639-11A-01R-0362-01	BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_G09_297992	BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_G09_297992.level3.data.txt	broad.mit.edu_OV.HT_HG-U133A.Level_3.9.1007.0	Level_3	yes	broad.mit.edu:mirror_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:29	Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_2012102400	OV-Normal.transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data.data.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_OV-Normal.Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data.Level_3.2012102400.1.0	yes
TCGA-01-0636-11A-01R-0362-01	BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_F03_297912	BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_F03_297912.level3.data.txt	broad.mit.edu_OV.HT_HG-U133A.Level_3.9.1007.0	Level_3	yes	broad.mit.edu:mirror_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:29	Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_2012102400	OV-Normal.transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data.data.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_OV-Normal.Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data.Level_3.2012102400.1.0	yes
TCGA-01-0630-11A-01R-0362-01	BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_D09_298018	BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_D09_298018.level3.data.txt	broad.mit.edu_OV.HT_HG-U133A.Level_3.9.1007.0	Level_3	yes	broad.mit.edu:mirror_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:29	Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_2012102400	OV-Normal.transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data.data.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_OV-Normal.Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data.Level_3.2012102400.1.0	yes
TCGA-01-0628-11A-01R-0362-01	BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_G08_298062	BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_G08_298062.level3.data.txt	broad.mit.edu_OV.HT_HG-U133A.Level_3.9.1007.0	Level_3	yes	broad.mit.edu:mirror_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:29	Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_2012102400	OV-Normal.transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data.data.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_OV-Normal.Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data.Level_3.2012102400.1.0	yes
TCGA-01-0642-11A-02R-0362-01	BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_H03_297978	BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_H03_297978.level3.data.txt	broad.mit.edu_OV.HT_HG-U133A.Level_3.9.1007.0	Level_3	yes	broad.mit.edu:mirror_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:29	Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_2012102400	OV-Normal.transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data.data.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_OV-Normal.Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data.Level_3.2012102400.1.0	yes
TCGA-01-0633-11A-01R-0362-01	BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_E09_298042	BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_E09_298042.level3.data.txt	broad.mit.edu_OV.HT_HG-U133A.Level_3.9.1007.0	Level_3	yes	broad.mit.edu:mirror_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:29	Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_2012102400	OV-Normal.transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data.data.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_OV-Normal.Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data.Level_3.2012102400.1.0	yes
TCGA-01-0631-11A-01R-0362-01	BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_E03_298100	BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_E03_298100.level3.data.txt	broad.mit.edu_OV.HT_HG-U133A.Level_3.9.1007.0	Level_3	yes	broad.mit.edu:mirror_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:29	Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_2012102400	OV-Normal.transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data.data.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_OV-Normal.Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data.Level_3.2012102400.1.0	yes
