| GDAC_clinicalDataPicker1 stage2File | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataMerger/COADREAD/2123785/0.GDAC_clinicalDataMerger.Finished/COADREAD.clin.merged.txt |
| GDAC_clinicalDataPicker1 selectFile | file:/xchip/cga/reference/tcga/clinical/2012_11_14/stage3_params_clin_coadread.tsv |
| GDAC_clinicalDataPicker1 nodeColumn | 1 |
| GDAC_clinicalDataPicker1 outPrefix | COADREAD |
| Execution Times: | |
| Submitted: | 22:11:58 10-12-12 |
| Completed: | |
| Elapsed: | 02 hrs 04 mins 29 secs |
step 1. GDAC_clinicalDataPicker [id: 251873] Picks out the clinical paramters of interest
urn:lsid:broadinstitute.org:cancer.genome.analysis:00312:26
| stage2File | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataMerger/COADREAD/2123785/0.GDAC_clinicalDataMerger.Finished/COADREAD.clin.merged.txt |
| selectFile | file:/xchip/cga/reference/tcga/clinical/2012_11_14/stage3_params_clin_coadread.tsv |
| nodeColumn | 1 |
| outPrefix | COADREAD |
| Output Files: | |
| COADREAD.clin.merged.picked.txt | |
| .lsf.out | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 22:12:06 10-12-12 |
| Completed: | 23:20:12 10-12-12 |
| Elapsed: | 01 hrs 08 mins 05 secs |
step 2. GDAC_clinicalDataPickerReport [id: 251874] Clinical data report
urn:lsid:broadinstitute.org:cancer.genome.analysis:00330:50
| picked | COADREAD.clin.merged.picked.txt |
| Execution Times: | |
| Submitted: | 22:12:07 10-12-12 |
| Completed: | 00:16:26 11-12-12 |
| Elapsed: | 02 hrs 04 mins 19 secs |