Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AK5	26289	hgsc.bcm.edu	37	1	77759516	77759516	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ARID1A	8289	hgsc.bcm.edu	37	1	27087467	27087467	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ARMC10	83787	hgsc.bcm.edu	37	7	102738906	102738906	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BAIAP3	8938	hgsc.bcm.edu	37	16	1394310	1394310	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BCAT1	586	hgsc.bcm.edu	37	12	24985748	24985748	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C12orf50	160419	hgsc.bcm.edu	37	12	88388466	88388466	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C1orf161	126868	hgsc.bcm.edu	37	1	116670806	116670806	+	Nonsense_Mutation	SNP	G	G	A	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C9orf153	389766	hgsc.bcm.edu	37	9	88844486	88844486	+	Silent	SNP	C	C	T	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CARD11	84433	hgsc.bcm.edu	37	7	2951854	2951854	+	Silent	SNP	G	G	A	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CCDC18	343099	hgsc.bcm.edu	37	1	93672722	93672722	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CCDC80	151887	hgsc.bcm.edu	37	3	112357946	112357946	+	Silent	SNP	G	G	T	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CEP110	11064	hgsc.bcm.edu	37	9	123930585	123930585	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CERCAM	51148	hgsc.bcm.edu	37	9	131185208	131185208	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CHDH	55349	hgsc.bcm.edu	37	3	53851850	53851850	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CMYA5	202333	hgsc.bcm.edu	37	5	79031960	79031960	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CNBD1	168975	hgsc.bcm.edu	37	8	87878755	87878755	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CNTNAP2	26047	hgsc.bcm.edu	37	7	147869410	147869410	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DCAF13	25879	hgsc.bcm.edu	37	8	104444937	104444937	+	Silent	SNP	T	T	C	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DDB1	1642	hgsc.bcm.edu	37	11	61081149	61081149	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DMTF1	9988	hgsc.bcm.edu	37	7	86802901	86802901	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ERCC2	2068	hgsc.bcm.edu	37	19	45872351	45872351	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAM160A1	729830	hgsc.bcm.edu	37	4	152577544	152577544	+	Silent	SNP	C	C	T	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FBXW7	55294	hgsc.bcm.edu	37	4	153332941	153332941	+	Silent	SNP	C	C	A	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FERMT3	83706	hgsc.bcm.edu	37	11	63979193	63979193	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FETUB	26998	hgsc.bcm.edu	37	3	186370105	186370105	+	Silent	SNP	T	T	G	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FREM2	341640	hgsc.bcm.edu	37	13	39265788	39265788	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GBP4	115361	hgsc.bcm.edu	37	1	89656967	89656967	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GTF2IRD2B	389524	hgsc.bcm.edu	37	7	74563753	74563753	+	Silent	SNP	G	G	A	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KIAA1549	57670	hgsc.bcm.edu	37	7	138603070	138603070	+	Silent	SNP	G	G	T	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LPIN1	23175	hgsc.bcm.edu	37	2	11932122	11932122	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MTMR3	8897	hgsc.bcm.edu	37	22	30403925	30403925	+	Silent	SNP	T	T	C	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MYO1E	4643	hgsc.bcm.edu	37	15	59528837	59528837	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MYOM2	9172	hgsc.bcm.edu	37	8	2064039	2064039	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NCOA6	23054	hgsc.bcm.edu	37	20	33356290	33356290	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NCSTN	23385	hgsc.bcm.edu	37	1	160313253	160313253	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NDC80	10403	hgsc.bcm.edu	37	18	2587917	2587917	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NFATC3	4775	hgsc.bcm.edu	37	16	68200896	68200896	+	Silent	SNP	A	A	T	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PDE6B	5158	hgsc.bcm.edu	37	4	628559	628559	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PEX3	8504	hgsc.bcm.edu	37	6	143780242	143780242	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RAB11FIP2	22841	hgsc.bcm.edu	37	10	119798634	119798634	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RUNX1T1	862	hgsc.bcm.edu	37	8	92972517	92972517	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SDK2	54549	hgsc.bcm.edu	37	17	71418510	71418510	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC12A9	56996	hgsc.bcm.edu	37	7	100459532	100459532	+	Silent	SNP	C	C	T	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLFN5	162394	hgsc.bcm.edu	37	17	33586478	33586478	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SNAPC3	6619	hgsc.bcm.edu	37	9	15453105	15453105	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SNX13	23161	hgsc.bcm.edu	37	7	17915357	17915357	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SRRM2	23524	hgsc.bcm.edu	37	16	2816400	2816400	+	Silent	SNP	G	G	A	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
STRADB	55437	hgsc.bcm.edu	37	2	202340447	202340447	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SYTL2	54843	hgsc.bcm.edu	37	11	85435949	85435949	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TAF4	6874	hgsc.bcm.edu	37	20	60551323	60551323	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
UNC5B	219699	hgsc.bcm.edu	37	10	73057821	73057821	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
VPS13C	54832	hgsc.bcm.edu	37	15	62238606	62238606	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZC3H6	376940	hgsc.bcm.edu	37	2	113080286	113080286	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF142	7701	hgsc.bcm.edu	37	2	219508795	219508795	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF577	84765	hgsc.bcm.edu	37	19	52376920	52376920	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
