Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AFF4	27125	hgsc.bcm.edu	37	5	132270357	132270358	+	In_Frame_Ins	INS	-	-	GCT	novel	.	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
AGBL1	123624	hgsc.bcm.edu	37	15	86809654	86809654	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BAT2L2	23215	hgsc.bcm.edu	37	1	171526902	171526902	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C11orf49	79096	hgsc.bcm.edu	37	11	47182704	47182704	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CACNA1I	8911	hgsc.bcm.edu	37	22	40038844	40038844	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CARD11	84433	hgsc.bcm.edu	37	7	2979559	2979559	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CATSPERB	79820	hgsc.bcm.edu	37	14	92171025	92171025	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CHD9	80205	hgsc.bcm.edu	37	16	53352219	53352219	+	Silent	SNP	T	T	A	novel	.	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DLGAP1	9229	hgsc.bcm.edu	37	18	3582181	3582181	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FBXO15	201456	hgsc.bcm.edu	37	18	71790669	71790669	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GABRE	2564	hgsc.bcm.edu	37	X	151131006	151131006	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GBA2	57704	hgsc.bcm.edu	37	9	35740010	35740010	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HPSE	10855	hgsc.bcm.edu	37	4	84240608	84240608	+	Nonsense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
JUNB	3726	hgsc.bcm.edu	37	19	12903620	12903620	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KIAA0355	9710	hgsc.bcm.edu	37	19	34832888	34832888	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KIF15	56992	hgsc.bcm.edu	37	3	44846572	44846572	+	Missense_Mutation	SNP	A	A	T	rs113556197	unknown	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LLGL2	3993	hgsc.bcm.edu	37	17	73569631	73569631	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MED13	9969	hgsc.bcm.edu	37	17	60088502	60088502	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NAB2	4665	hgsc.bcm.edu	37	12	57486952	57486952	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NAT2	10	hgsc.bcm.edu	37	8	18258036	18258036	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NFKBIZ	64332	hgsc.bcm.edu	37	3	101571994	101571994	+	Silent	SNP	C	C	T	novel	.	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NRXN2	9379	hgsc.bcm.edu	37	11	64390412	64390412	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ODZ4	26011	hgsc.bcm.edu	37	11	78413073	78413073	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PALB2	79728	hgsc.bcm.edu	37	16	23647169	23647169	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PARP11	57097	hgsc.bcm.edu	37	12	3921406	3921406	+	Silent	SNP	T	T	C	novel	.	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PDSS2	57107	hgsc.bcm.edu	37	6	107595237	107595237	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PPP2R1A	5518	hgsc.bcm.edu	37	19	52716326	52716326	+	Nonsense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PSKH2	85481	hgsc.bcm.edu	37	8	87060752	87060752	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PTPRN	5798	hgsc.bcm.edu	37	2	220159785	220159785	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RANBP2	5903	hgsc.bcm.edu	37	2	109381107	109381107	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RBM10	8241	hgsc.bcm.edu	37	X	47039844	47039844	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC12A5	57468	hgsc.bcm.edu	37	20	44684789	44684789	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ST3GAL6	10402	hgsc.bcm.edu	37	3	98503802	98503802	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
STAG3	10734	hgsc.bcm.edu	37	7	99783914	99783914	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TCF20	6942	hgsc.bcm.edu	37	22	42610520	42610520	+	Silent	SNP	G	G	A	novel	.	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TCF20	6942	hgsc.bcm.edu	37	22	42610538	42610538	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TEC	7006	hgsc.bcm.edu	37	4	48151686	48151686	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TMC1	117531	hgsc.bcm.edu	37	9	75369724	75369724	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
UIMC1	51720	hgsc.bcm.edu	37	5	176334129	176334129	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
WDR53	348793	hgsc.bcm.edu	37	3	196288045	196288045	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF746	155061	hgsc.bcm.edu	37	7	149174659	149174659	+	Silent	SNP	G	G	T	novel	.	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF828	283489	hgsc.bcm.edu	37	13	115090276	115090277	+	Frame_Shift_Ins	INS	-	-	T	novel	.	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
