Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ANP32B	10541	hgsc.bcm.edu	37	9	100777710	100777710	+	Missense_Mutation	SNP	T	T	A	rs112073824	unknown	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
AP4B1	10717	hgsc.bcm.edu	37	1	114440494	114440494	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ARHGAP12	94134	hgsc.bcm.edu	37	10	32098018	32098018	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BAT2L2	23215	hgsc.bcm.edu	37	1	171527018	171527018	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BCL7C	9274	hgsc.bcm.edu	37	16	30899307	30899307	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BIRC6	57448	hgsc.bcm.edu	37	2	32613998	32613998	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CCBL2	56267	hgsc.bcm.edu	37	1	89430535	89430535	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CCDC93	54520	hgsc.bcm.edu	37	2	118693136	118693136	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CDHR1	92211	hgsc.bcm.edu	37	10	85961624	85961624	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CLCNKA	1187	hgsc.bcm.edu	37	1	16356522	16356522	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
COL4A5	1287	hgsc.bcm.edu	37	X	107923920	107923920	+	Silent	SNP	C	C	T	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CREBBP	1387	hgsc.bcm.edu	37	16	3820642	3820642	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CSMD2	114784	hgsc.bcm.edu	37	1	34083218	34083218	+	Splice_Site	SNP	C	C	T	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CSRP2BP	57325	hgsc.bcm.edu	37	20	18163922	18163922	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DGUOK	1716	hgsc.bcm.edu	37	2	74173854	74173854	+	Silent	SNP	T	T	A	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DYM	54808	hgsc.bcm.edu	37	18	46623772	46623772	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
EFHB	151651	hgsc.bcm.edu	37	3	19956903	19956903	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ERVFRDE1	405754	hgsc.bcm.edu	37	6	11105373	11105373	+	Silent	SNP	A	A	C	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAM200A	221786	hgsc.bcm.edu	37	7	99145240	99145240	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FOXN1	8456	hgsc.bcm.edu	37	17	26861924	26861924	+	Silent	SNP	G	G	A	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GAS8	2622	hgsc.bcm.edu	37	16	90104179	90104179	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GLB1L2	89944	hgsc.bcm.edu	37	11	134217318	134217318	+	Silent	SNP	G	G	A	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GPR84	53831	hgsc.bcm.edu	37	12	54757068	54757068	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GTPBP5	26164	hgsc.bcm.edu	37	20	60774274	60774274	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
INTS6	26512	hgsc.bcm.edu	37	13	51943308	51943308	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KCNJ12	3768	hgsc.bcm.edu	37	17	21319439	21319439	+	Missense_Mutation	SNP	T	T	G	rs76684759	unknown	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KCNK9	51305	hgsc.bcm.edu	37	8	140630792	140630792	+	Silent	SNP	C	C	T	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KIAA0100	9703	hgsc.bcm.edu	37	17	26961036	26961036	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LATS2	26524	hgsc.bcm.edu	37	13	21557521	21557521	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LRP1	4035	hgsc.bcm.edu	37	12	57548278	57548278	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MUC13	56667	hgsc.bcm.edu	37	3	124653519	124653519	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MUC16	94025	hgsc.bcm.edu	37	19	9005219	9005219	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MUC16	94025	hgsc.bcm.edu	37	19	9005228	9005228	+	Silent	SNP	A	A	G	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NBPF7	343505	hgsc.bcm.edu	37	1	120384043	120384043	+	Silent	SNP	C	C	T	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NCKAP1	10787	hgsc.bcm.edu	37	2	183806831	183806831	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NEUROD6	63974	hgsc.bcm.edu	37	7	31378184	31378184	+	Silent	SNP	G	G	T	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NKG7	4818	hgsc.bcm.edu	37	19	51875455	51875455	+	Silent	SNP	G	G	T	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NKIRAS2	28511	hgsc.bcm.edu	37	17	40174435	40174435	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NRD1	4898	hgsc.bcm.edu	37	1	52257262	52257262	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PCDH20	64881	hgsc.bcm.edu	37	13	61986576	61986576	+	Silent	SNP	G	G	T	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PCDHB7	56129	hgsc.bcm.edu	37	5	140553793	140553793	+	Silent	SNP	T	T	C	rs114684348	unknown	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PDZD2	23037	hgsc.bcm.edu	37	5	32089822	32089822	+	Silent	SNP	C	C	T	rs114875003	unknown	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PIPOX	51268	hgsc.bcm.edu	37	17	27379941	27379941	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PKHD1	5314	hgsc.bcm.edu	37	6	51890586	51890586	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PLEKHG1	57480	hgsc.bcm.edu	37	6	151161484	151161484	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PPP2R5B	5526	hgsc.bcm.edu	37	11	64694267	64694267	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PRSS3	5646	hgsc.bcm.edu	37	9	33797962	33797962	+	Silent	SNP	A	A	G	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PTPRC	5788	hgsc.bcm.edu	37	1	198704330	198704330	+	Silent	SNP	C	C	T	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PTPRU	10076	hgsc.bcm.edu	37	1	29618444	29618444	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RBCK1	10616	hgsc.bcm.edu	37	20	409176	409176	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RPAP3	79657	hgsc.bcm.edu	37	12	48091482	48091482	+	Silent	SNP	A	A	T	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RPS6KL1	83694	hgsc.bcm.edu	37	14	75376624	75376624	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SECISBP2L	9728	hgsc.bcm.edu	37	15	49309095	49309095	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC25A5	292	hgsc.bcm.edu	37	X	118604409	118604409	+	Silent	SNP	C	C	T	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SMC1A	8243	hgsc.bcm.edu	37	X	53436014	53436014	+	Silent	SNP	C	C	T	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SYNE2	23224	hgsc.bcm.edu	37	14	64516356	64516356	+	Nonsense_Mutation	SNP	A	A	T	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TAS1R2	80834	hgsc.bcm.edu	37	1	19168259	19168259	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TJP2	9414	hgsc.bcm.edu	37	9	71867781	71867781	+	Silent	SNP	G	G	A	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TMEM194B	100131211	hgsc.bcm.edu	37	2	191379270	191379270	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TNRC6A	27327	hgsc.bcm.edu	37	16	24788558	24788558	+	Silent	SNP	T	T	A	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TRIT1	54802	hgsc.bcm.edu	37	1	40313333	40313333	+	Splice_Site	SNP	C	C	A	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
WDR26	80232	hgsc.bcm.edu	37	1	224606085	224606085	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
WDR55	54853	hgsc.bcm.edu	37	5	140048292	140048292	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZBTB38	253461	hgsc.bcm.edu	37	3	141163555	141163555	+	Silent	SNP	G	G	A	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZMYM4	9202	hgsc.bcm.edu	37	1	35871038	35871038	+	Silent	SNP	C	C	G	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF131	7690	hgsc.bcm.edu	37	5	43173498	43173498	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
