Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCA12	26154	hgsc.bcm.edu	37	2	215831608	215831608	+	Nonsense_Mutation	SNP	G	G	A	novel	.	TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ANPEP	290	hgsc.bcm.edu	37	15	90344775	90344775	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ARSI	340075	hgsc.bcm.edu	37	5	149677805	149677805	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ASXL3	80816	hgsc.bcm.edu	37	18	31326427	31326427	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C17orf75	64149	hgsc.bcm.edu	37	17	30658932	30658932	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CEP110	11064	hgsc.bcm.edu	37	9	123935751	123935751	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DNAH8	1769	hgsc.bcm.edu	37	6	38980401	38980401	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DNAJC12	56521	hgsc.bcm.edu	37	10	69583118	69583118	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DPP8	54878	hgsc.bcm.edu	37	15	65804777	65804777	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
EPB41L5	57669	hgsc.bcm.edu	37	2	120776734	120776734	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAM120C	54954	hgsc.bcm.edu	37	X	54142988	54142988	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FLT1	2321	hgsc.bcm.edu	37	13	28903788	28903788	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FOXN4	121643	hgsc.bcm.edu	37	12	109724492	109724492	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KLF5	688	hgsc.bcm.edu	37	13	73636044	73636044	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LARP1	23367	hgsc.bcm.edu	37	5	154185452	154185452	+	Nonsense_Mutation	SNP	C	C	A	novel	.	TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MCPH1	79648	hgsc.bcm.edu	37	8	6296490	6296502	+	Frame_Shift_Del	DEL	TCTCTTATTTGAA	TCTCTTATTTGAA	-	novel	.	TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	TCTCTTATTTGAA	TCTCTTATTTGAA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MFSD10	10227	hgsc.bcm.edu	37	4	2935293	2935293	+	Splice_Site	SNP	C	C	A	novel	.	TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MST1R	4486	hgsc.bcm.edu	37	3	49927956	49927956	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MUM1	84939	hgsc.bcm.edu	37	19	1364542	1364542	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NBR1	4077	hgsc.bcm.edu	37	17	41345367	41345367	+	Silent	SNP	C	C	G	novel	.	TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NIPBL	25836	hgsc.bcm.edu	37	5	36955611	36955611	+	Silent	SNP	T	T	A	novel	.	TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NSUN4	387338	hgsc.bcm.edu	37	1	46827433	46827433	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NTRK2	4915	hgsc.bcm.edu	37	9	87635222	87635222	+	Silent	SNP	G	G	T	novel	.	TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
OLFM3	118427	hgsc.bcm.edu	37	1	102290660	102290660	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
OR10V1	390201	hgsc.bcm.edu	37	11	59481181	59481181	+	Silent	SNP	T	T	G	novel	.	TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
OR8K5	219453	hgsc.bcm.edu	37	11	55926954	55926954	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PITPNB	23760	hgsc.bcm.edu	37	22	28290544	28290544	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PLCB4	5332	hgsc.bcm.edu	37	20	9459569	9459569	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RAB5B	5869	hgsc.bcm.edu	37	12	56385916	56385918	+	In_Frame_Del	DEL	GGA	GGA	-	novel	.	TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	GGA	GGA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SCP2	6342	hgsc.bcm.edu	37	1	53453708	53453708	+	Silent	SNP	T	T	G	novel	.	TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC22A16	85413	hgsc.bcm.edu	37	6	110757118	110757118	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TAF1	6872	hgsc.bcm.edu	37	X	70678095	70678095	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZBTB10	65986	hgsc.bcm.edu	37	8	81399912	81399913	+	Frame_Shift_Del	DEL	AG	AG	-	novel	.	TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	AG	AG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZBTB16	7704	hgsc.bcm.edu	37	11	114112972	114112972	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZZEF1	23140	hgsc.bcm.edu	37	17	4020303	4020303	+	Silent	SNP	C	C	A	novel	.	TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
