GDAC_CreateMergeDataFilesSDRF1 samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.LGG.2012_12_06__00_00_32.samplestamp.txt |
GDAC_CreateMergeDataFilesSDRF1 annotationids | rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data |
GDAC_CreateMergeDataFilesSDRF1 datapathsfile | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergeDataFilesPipeline/LGG/2124485/GDAC_CreateMergeDataFilesSDRF1.datapathsfile.input.tsv |
GDAC_MergeDataFiles2 inputfilelist filename | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergeDataFilesPipeline/LGG/2124485/GDAC_MergeDataFiles2.inputfilelist.filename.input.tsv |
GDAC_MergeDataFiles2 output filename | LGG |
GDAC_MergeDataFiles2 row_column | column |
GDAC_MergeDataFiles2 num_headers | 1 |
GDAC_MergeDataFiles2 filetype | rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data.data |
Execution Times: | |
Submitted: | 18:33:52 10-12-12 |
Completed: | |
Elapsed: | 02 hrs 12 mins 16 secs |
step 1. GDAC_CreateMergeDataFilesSDRF [id: 247371] This module parses a samplestamp based on an input annotation id and creates an SDRF file as output.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00467:12
samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.LGG.2012_12_06__00_00_32.samplestamp.txt |
annotationids | rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data |
sdrfName | |
doNotCreateManifest | |
datapathsfile | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergeDataFilesPipeline/LGG/2124485/GDAC_CreateMergeDataFilesSDRF1.datapathsfile.input.tsv |
Output Files: | |
LGG.merger.sdrf.txt | |
dcc_archive.properties | |
.lsf.out | |
dcc_archive_manifest.tsv | |
stdout.txt |
Execution Times: | |
Submitted: | 18:45:13 10-12-12 |
Completed: | 19:35:07 10-12-12 |
Elapsed: | 00 hrs 49 mins 54 secs |
step 2. GDAC_MergeDataFiles [id: 247372] Merges row or column oriented text datatable files, validating that the headers match.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00140:3
inputfilelist filename | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergeDataFilesPipeline/LGG/2124485/GDAC_MergeDataFiles2.inputfilelist.filename.input.tsv |
output filename | LGG |
row_column | column |
num_headers | 1 |
filetype | rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data.data |
Output Files: | |
LGG.rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data.data.txt | |
.lsf.out | |
stdout.txt |
Execution Times: | |
Submitted: | 18:45:13 10-12-12 |
Completed: | 20:46:04 10-12-12 |
Elapsed: | 02 hrs 00 mins 50 secs |