Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
UBR4	23352	broad.mit.edu	36	1	19314717	19314717	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0926-01	TCGA-10-0926-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-10-0926-01	Broad	Missense_Mutation	SNP	19314717	19314717	UBR4	1	G	G	T	42
CLSPN	63967	broad.mit.edu	36	1	35974712	35974712	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0926-01	TCGA-10-0926-01			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-10-0926-01	Broad	Missense_Mutation	SNP	35974712	35974712	CLSPN	1	C	C	T	31
DPH2	1802	broad.mit.edu	36	1	44210323	44210323	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-10-0926-01	TCGA-10-0926-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-10-0926-01	Broad	Silent	SNP	44210323	44210323	DPH2	1	T	T	C	52
ZRANB2	9406	broad.mit.edu	36	1	71316933	71316933	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0926-01	TCGA-10-0926-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-10-0926-01	Broad	Missense_Mutation	SNP	71316933	71316933	ZRANB2	1	C	C	A	21
CAMSAP1L1	23271	broad.mit.edu	36	1	198996695	198996695	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0926-01	TCGA-10-0926-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-10-0926-01	Broad	Missense_Mutation	SNP	198996695	198996695	CAMSAP1L1	1	G	G	T	48
EXO1	9156	broad.mit.edu	36	1	240102020	240102020	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-10-0926-01	TCGA-10-0926-01			A	C	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-10-0926-01	Broad	Missense_Mutation	SNP	240102020	240102020	EXO1	1	A	A	C	1
HBD	3045	broad.mit.edu	36	11	5211992	5211992	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0926-01	TCGA-10-0926-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-10-0926-01	Broad	Missense_Mutation	SNP	5211992	5211992	HBD	11	C	C	G	32
ZFPL1	7542	broad.mit.edu	36	11	64612082	64612082	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0926-01	TCGA-10-0926-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-10-0926-01	Broad	Missense_Mutation	SNP	64612082	64612082	ZFPL1	11	C	C	T	31
OR2AT4	341152	broad.mit.edu	36	11	74477819	74477819	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0926-01	TCGA-10-0926-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-10-0926-01	Broad	Missense_Mutation	SNP	74477819	74477819	OR2AT4	11	G	G	T	48
ATP2B1	490	broad.mit.edu	36	12	88521684	88521684	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0926-01	TCGA-10-0926-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-10-0926-01	Broad	Missense_Mutation	SNP	88521684	88521684	ATP2B1	12	C	C	G	29
ATP6V0A2	23545	broad.mit.edu	36	12	122786043	122786043	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0926-01	TCGA-10-0926-01			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-10-0926-01	Broad	Silent	SNP	122786043	122786043	ATP6V0A2	12	C	C	T	19
GPC5	2262	broad.mit.edu	36	13	91143783	91143783	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0926-01	TCGA-10-0926-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-10-0926-01	Broad	Missense_Mutation	SNP	91143783	91143783	GPC5	13	C	C	T	23
SLC10A2	6555	broad.mit.edu	36	13	102501769	102501769	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0926-01	TCGA-10-0926-01			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-10-0926-01	Broad	Silent	SNP	102501769	102501769	SLC10A2	13	C	C	T	23
MCF2L	23263	broad.mit.edu	36	13	112747657	112747657	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0926-01	TCGA-10-0926-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-10-0926-01	Broad	Missense_Mutation	SNP	112747657	112747657	MCF2L	13	C	C	T	27
PELI2	57161	broad.mit.edu	36	14	55833216	55833216	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0926-01	TCGA-10-0926-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-10-0926-01	Broad	Missense_Mutation	SNP	55833216	55833216	PELI2	14	G	G	A	39
KIAA1409	57578	broad.mit.edu	36	14	93173385	93173385	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-10-0926-01	TCGA-10-0926-01			A	G	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-10-0926-01	Broad	Silent	SNP	93173385	93173385	KIAA1409	14	A	A	G	8
SALL1	6299	broad.mit.edu	36	16	49733438	49733438	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-10-0926-01	TCGA-10-0926-01			T	G	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-10-0926-01	Broad	Missense_Mutation	SNP	49733438	49733438	SALL1	16	T	T	G	57
ZBTB4	57659	broad.mit.edu	36	17	7306308	7306308	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0926-01	TCGA-10-0926-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-10-0926-01	Broad	Missense_Mutation	SNP	7306308	7306308	ZBTB4	17	C	C	T	23
TP53	7157	broad.mit.edu	36	17	7519167	7519167	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-10-0926-01	TCGA-10-0926-01			T	C	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-10-0926-01	Broad	Missense_Mutation	SNP	7519167	7519167	TP53	17	T	T	C	57
MED1	5469	broad.mit.edu	36	17	34819137	34819137	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0926-01	TCGA-10-0926-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-10-0926-01	Broad	Missense_Mutation	SNP	34819137	34819137	MED1	17	C	C	T	22
FCGBP	8857	broad.mit.edu	36	19	45054635	45054635	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0926-01	TCGA-10-0926-01			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-10-0926-01	Broad	Missense_Mutation	SNP	45054635	45054635	FCGBP	19	C	C	T	27
MRPS5	64969	broad.mit.edu	36	2	95129978	95129978	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0926-01	TCGA-10-0926-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-10-0926-01	Broad	Missense_Mutation	SNP	95129978	95129978	MRPS5	2	C	C	T	24
BAZ2B	29994	broad.mit.edu	36	2	159997727	159997727	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0926-01	TCGA-10-0926-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-10-0926-01	Broad	Missense_Mutation	SNP	159997727	159997727	BAZ2B	2	C	C	T	24
CYP27A1	1593	broad.mit.edu	36	2	219385950	219385950	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0926-01	TCGA-10-0926-01			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-10-0926-01	Broad	Missense_Mutation	SNP	219385950	219385950	CYP27A1	2	C	C	T	26
ALPP	250	broad.mit.edu	36	2	232953634	232953634	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0926-01	TCGA-10-0926-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-10-0926-01	Broad	Missense_Mutation	SNP	232953634	232953634	ALPP	2	C	C	T	22
IL17RC	84818	broad.mit.edu	36	3	9934070	9934070	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-10-0926-01	TCGA-10-0926-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-10-0926-01	Broad	Missense_Mutation	SNP	9934070	9934070	IL17RC	3	T	T	G	56
STXBP5L	9515	broad.mit.edu	36	3	122247071	122247071	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0926-01	TCGA-10-0926-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-10-0926-01	Broad	Nonsense_Mutation	SNP	122247071	122247071	STXBP5L	3	C	C	T	19
SPATA16	83893	broad.mit.edu	36	3	174125897	174125897	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-10-0926-01	TCGA-10-0926-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-10-0926-01	Broad	Silent	SNP	174125897	174125897	SPATA16	3	C	C	A	18
LIPH	200879	broad.mit.edu	36	3	186734077	186734077	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0926-01	TCGA-10-0926-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-10-0926-01	Broad	Missense_Mutation	SNP	186734077	186734077	LIPH	3	C	C	T	31
APBB2	323	broad.mit.edu	36	4	40587200	40587200	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0926-01	TCGA-10-0926-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-10-0926-01	Broad	Silent	SNP	40587200	40587200	APBB2	4	G	G	A	38
ARHGEF38	54848	broad.mit.edu	36	4	106729943	106729944	+	Missense_Mutation	DNP	GA	GA	TT	novel	Unknown	TCGA-10-0926-01	TCGA-10-0926-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-10-0926-01	Broad	Missense_Mutation	DNP	106729943	106729944	ARHGEF38	4	GA	GA	TT	41
S100Z	170591	broad.mit.edu	36	5	76206977	76206977	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0926-01	TCGA-10-0926-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-10-0926-01	Broad	Missense_Mutation	SNP	76206977	76206977	S100Z	5	A	A	G	12
NMUR2	56923	broad.mit.edu	36	5	151764166	151764166	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0926-01	TCGA-10-0926-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-10-0926-01	Broad	Silent	SNP	151764166	151764166	NMUR2	5	G	G	A	41
LAMA2	3908	broad.mit.edu	36	6	129854834	129854834	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0926-01	TCGA-10-0926-01			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-10-0926-01	Broad	Missense_Mutation	SNP	129854834	129854834	LAMA2	6	C	C	T	28
GPNMB	10457	broad.mit.edu	36	7	23280357	23280357	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0926-01	TCGA-10-0926-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-10-0926-01	Broad	Missense_Mutation	SNP	23280357	23280357	GPNMB	7	G	G	C	35
ABCB1	5243	broad.mit.edu	36	7	87008683	87008683	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0926-01	TCGA-10-0926-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-10-0926-01	Broad	Nonsense_Mutation	SNP	87008683	87008683	ABCB1	7	G	G	A	40
EIF4EBP1	1978	broad.mit.edu	36	8	38033901	38033901	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0926-01	TCGA-10-0926-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-10-0926-01	Broad	Missense_Mutation	SNP	38033901	38033901	EIF4EBP1	8	C	C	A	18
KIF24	347240	broad.mit.edu	36	9	34247952	34247952	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0926-01	TCGA-10-0926-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-10-0926-01	Broad	Silent	SNP	34247952	34247952	KIF24	9	C	C	T	20
LPAR1	1902	broad.mit.edu	36	9	112677753	112677753	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0926-01	TCGA-10-0926-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-10-0926-01	Broad	Silent	SNP	112677753	112677753	LPAR1	9	G	G	A	40
HUWE1	10075	broad.mit.edu	36	X	53588377	53588377	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-10-0926-01	TCGA-10-0926-01			A	T	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-10-0926-01	Broad	Missense_Mutation	SNP	53588377	53588377	HUWE1	23	A	A	T	7
TEX11	56159	broad.mit.edu	36	X	69743565	69743565	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0926-01	TCGA-10-0926-01			A	G	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-10-0926-01	Broad	Missense_Mutation	SNP	69743565	69743565	TEX11	23	A	A	G	8
COL4A6	1288	broad.mit.edu	36	X	107317861	107317861	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0926-01	TCGA-10-0926-01			G	T	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-10-0926-01	Broad	Missense_Mutation	SNP	107317861	107317861	COL4A6	23	G	G	T	47
NKRF	55922	broad.mit.edu	36	X	118607769	118607769	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0926-01	TCGA-10-0926-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-10-0926-01	Broad	Silent	SNP	118607769	118607769	NKRF	23	G	G	A	45
MAP7D3	79649	broad.mit.edu	36	X	135130616	135130616	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0926-01	TCGA-10-0926-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-10-0926-01	Broad	Missense_Mutation	SNP	135130616	135130616	MAP7D3	23	G	G	T	48
