Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
CA6	765	broad.mit.edu	36	1	8939918	8939918	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	8939918	8939918	CA6	1	G	G	C	33
IGSF21	84966	broad.mit.edu	36	1	18564705	18564705	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	18564705	18564705	IGSF21	1	C	C	A	17
COL16A1	1307	broad.mit.edu	36	1	31936148	31936148	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	31936148	31936148	COL16A1	1	C	C	A	26
FOXJ3	22887	broad.mit.edu	36	1	42466212	42466212	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	42466212	42466212	FOXJ3	1	C	C	A	26
C8A	731	broad.mit.edu	36	1	57113214	57113214	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	57113214	57113214	C8A	1	G	G	A	37
MAGI3	260425	broad.mit.edu	36	1	114003284	114003284	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01			C	G	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	114003284	114003284	MAGI3	1	C	C	G	20
TDRKH	11022	broad.mit.edu	36	1	150022058	150022058	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	150022058	150022058	TDRKH	1	C	C	A	22
POGK	57645	broad.mit.edu	36	1	165085973	165085973	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Nonsense_Mutation	SNP	165085973	165085973	POGK	1	C	C	A	17
TNN	63923	broad.mit.edu	36	1	173363881	173363881	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	173363881	173363881	TNN	1	G	G	A	43
CRB1	23418	broad.mit.edu	36	1	195657365	195657365	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	195657365	195657365	CRB1	1	C	C	G	28
PROX1	5629	broad.mit.edu	36	1	212237324	212237324	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01			T	A	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	212237324	212237324	PROX1	1	T	T	A	58
OR2T6	254879	broad.mit.edu	36	1	246617796	246617796	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Silent	SNP	246617796	246617796	OR2T6	1	C	C	T	27
FRMD4A	55691	broad.mit.edu	36	10	13843663	13843663	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	13843663	13843663	FRMD4A	10	C	C	A	32
HTR7	3363	broad.mit.edu	36	10	92499253	92499253	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Silent	SNP	92499253	92499253	HTR7	10	G	G	A	33
NOLC1	9221	broad.mit.edu	36	10	103909240	103909240	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	103909240	103909240	NOLC1	10	C	C	T	23
SOX6	55553	broad.mit.edu	36	11	15951143	15951143	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	15951143	15951143	SOX6	11	T	T	C	58
CAPN1	823	broad.mit.edu	36	11	64707243	64707243	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Silent	SNP	64707243	64707243	CAPN1	11	G	G	A	47
ODZ4	26011	broad.mit.edu	36	11	78061015	78061015	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	78061015	78061015	ODZ4	11	T	T	A	60
GUCY1A2	2977	broad.mit.edu	36	11	106152495	106152495	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0916-01	Broad	Silent	SNP	106152495	106152495	GUCY1A2	11	G	G	A	36
CD163	9332	broad.mit.edu	36	12	7529120	7529120	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	7529120	7529120	CD163	12	C	C	T	22
PDZRN4	29951	broad.mit.edu	36	12	40232766	40232766	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01			C	A	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0916-01	Broad	Silent	SNP	40232766	40232766	PDZRN4	12	C	C	A	26
GALNT6	11226	broad.mit.edu	36	12	50059624	50059624	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01			T	C	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	50059624	50059624	GALNT6	12	T	T	C	56
KRT72	140807	broad.mit.edu	36	12	51270960	51270960	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	51270960	51270960	KRT72	12	G	G	T	44
C12orf50	160419	broad.mit.edu	36	12	86916075	86916075	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Nonsense_Mutation	SNP	86916075	86916075	C12orf50	12	G	G	A	45
PXN	5829	broad.mit.edu	36	12	119134669	119134669	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01			G	T	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	119134669	119134669	PXN	12	G	G	T	33
DNAH10	196385	broad.mit.edu	36	12	122961116	122961116	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	122961116	122961116	DNAH10	12	G	G	A	45
FRY	10129	broad.mit.edu	36	13	31733801	31733801	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01			G	T	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	31733801	31733801	FRY	13	G	G	T	41
SCEL	8796	broad.mit.edu	36	13	77075255	77075255	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	77075255	77075255	SCEL	13	C	C	T	17
TRIP11	9321	broad.mit.edu	36	14	91508929	91508929	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01			T	A	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0916-01	Broad	Silent	SNP	91508929	91508929	TRIP11	14	T	T	A	53
FRMD5	84978	broad.mit.edu	36	15	41953561	41953561	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	41953561	41953561	FRMD5	15	C	C	T	21
UNC13C	440279	broad.mit.edu	36	15	52626254	52626254	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	52626254	52626254	UNC13C	15	G	G	C	34
RRN3	54700	broad.mit.edu	36	16	15076216	15076216	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	15076216	15076216	RRN3	16	C	C	T	29
TP53	7157	broad.mit.edu	36	17	7518988	7518988	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Nonsense_Mutation	SNP	7518988	7518988	TP53	17	G	G	A	39
ACCN1	40	broad.mit.edu	36	17	28377105	28377105	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	28377105	28377105	ACCN1	17	G	G	T	43
DSC1	1823	broad.mit.edu	36	18	26988799	26988799	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	26988799	26988799	DSC1	18	T	T	C	54
KLHL14	57565	broad.mit.edu	36	18	28514445	28514445	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	28514445	28514445	KLHL14	18	G	G	A	38
ALPK2	115701	broad.mit.edu	36	18	54354971	54354971	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	54354971	54354971	ALPK2	18	G	G	C	41
TIMM44	10469	broad.mit.edu	36	19	7903585	7903585	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	7903585	7903585	TIMM44	19	C	C	T	23
ZNF266	10781	broad.mit.edu	36	19	9385703	9385703	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	9385703	9385703	ZNF266	19	C	C	T	30
OR7C2	26658	broad.mit.edu	36	19	14913699	14913699	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Silent	SNP	14913699	14913699	OR7C2	19	G	G	A	39
GPI	2821	broad.mit.edu	36	19	39579083	39579083	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01			C	G	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	39579083	39579083	GPI	19	C	C	G	32
ZNF615	284370	broad.mit.edu	36	19	57188208	57188208	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01			A	T	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	57188208	57188208	ZNF615	19	A	A	T	4
OSR1	130497	broad.mit.edu	36	2	19415536	19415536	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	19415536	19415536	OSR1	2	G	G	T	44
GALNT13	114805	broad.mit.edu	36	2	154960832	154960832	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01			C	A	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	154960832	154960832	GALNT13	2	C	C	A	24
ZNF804A	91752	broad.mit.edu	36	2	185509018	185509018	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	185509018	185509018	ZNF804A	2	C	C	A	25
ANKRD44	91526	broad.mit.edu	36	2	197659661	197659661	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	197659661	197659661	ANKRD44	2	T	T	A	58
MAP2	4133	broad.mit.edu	36	2	210268820	210268820	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01			T	A	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0916-01	Broad	Silent	SNP	210268820	210268820	MAP2	2	T	T	A	55
TGM6	343641	broad.mit.edu	36	20	2346128	2346128	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Silent	SNP	2346128	2346128	TGM6	20	C	C	G	29
PDZRN3	23024	broad.mit.edu	36	3	73517521	73517521	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	73517521	73517521	PDZRN3	3	C	C	G	19
WDFY3	23001	broad.mit.edu	36	4	85842635	85842635	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01			C	A	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	85842635	85842635	WDFY3	4	C	C	A	26
FRG2	448831	broad.mit.edu	36	4	191185200	191185200	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	191185200	191185200	FRG2	4	T	T	A	55
C5orf42	65250	broad.mit.edu	36	5	37234612	37234612	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01			T	A	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0916-01	Broad	Silent	SNP	37234612	37234612	C5orf42	5	T	T	A	53
PCDHB13	56123	broad.mit.edu	36	5	140574541	140574541	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	140574541	140574541	PCDHB13	5	C	C	T	23
CDHR2	54825	broad.mit.edu	36	5	175935757	175935757	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	175935757	175935757	CDHR2	5	G	G	A	37
HIST1H4K	8362	broad.mit.edu	36	6	27907087	27907087	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Silent	SNP	27907087	27907087	HIST1H4K	6	C	C	T	29
MAS1L	116511	broad.mit.edu	36	6	29563268	29563268	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Silent	SNP	29563268	29563268	MAS1L	6	A	A	G	3
MDC1	9656	broad.mit.edu	36	6	30779975	30779975	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	30779975	30779975	MDC1	6	G	G	C	47
TNXB	7148	broad.mit.edu	36	6	32161706	32161706	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	32161706	32161706	TNXB	6	C	C	A	27
SLC26A8	116369	broad.mit.edu	36	6	36095275	36095275	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	36095275	36095275	SLC26A8	6	C	C	G	23
TFAP2D	83741	broad.mit.edu	36	6	50826952	50826952	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Silent	SNP	50826952	50826952	TFAP2D	6	T	T	C	54
GRIK2	2898	broad.mit.edu	36	6	102622979	102622979	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	102622979	102622979	GRIK2	6	A	A	C	1
TNFAIP3	7128	broad.mit.edu	36	6	138244103	138244103	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	138244103	138244103	TNFAIP3	6	A	A	G	2
KCTD7	154881	broad.mit.edu	36	7	65741600	65741600	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Silent	SNP	65741600	65741600	KCTD7	7	G	G	C	45
CACNA2D1	781	broad.mit.edu	36	7	81436219	81436219	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	81436219	81436219	CACNA2D1	7	C	C	T	30
C7orf52	375607	broad.mit.edu	36	7	100602336	100602336	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	100602336	100602336	C7orf52	7	G	G	T	43
SLC26A3	1811	broad.mit.edu	36	7	107211005	107211005	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	107211005	107211005	SLC26A3	7	C	C	G	30
PLXNA4	91584	broad.mit.edu	36	7	131843728	131843728	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	131843728	131843728	PLXNA4	7	C	C	A	30
GPR21	2844	broad.mit.edu	36	9	124837235	124837235	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	124837235	124837235	GPR21	9	A	A	G	14
GDPD2	54857	broad.mit.edu	36	X	69563254	69563254	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	69563254	69563254	GDPD2	23	C	C	T	26
SLC16A2	6567	broad.mit.edu	36	X	73668015	73668015	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	73668015	73668015	SLC16A2	23	G	G	A	33
ESX1	80712	broad.mit.edu	36	X	103381695	103381695	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0916-01	Broad	Missense_Mutation	SNP	103381695	103381695	ESX1	23	G	G	A	38
C10orf140	387640	broad.mit.edu	36	10	21845472	21845473	+	In_Frame_Ins	INS	-	CCTCCT	-	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-13-0916-01	Broad	In_Frame_Ins	INS	21845472	21845473	C10orf140	10	-	CCTCCT	-	22
TGIF1	7050	broad.mit.edu	36	18	3442223	3442223	+	Frame_Shift_Del	DEL	T	-	T	rs11571510	byCluster	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-13-0916-01	Broad	Frame_Shift_Del	DEL	3442223	3442223	TGIF1	18	T	-	T	54
CHDH	55349	broad.mit.edu	36	3	53827088	53827089	+	Frame_Shift_Del	DEL	CA	-	CA	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01			-	CA	CA	CA	Unknown	Valid	Somatic	Phase_I	Capture				Illumina GAIIx	TCGA-13-0916-01	Broad	Frame_Shift_Del	DEL	53827088	53827089	CHDH	3	CA	-	CA	25
L3MBTL3	84456	broad.mit.edu	36	6	130502489	130502518	+	In_Frame_Del	DEL	CATTGTTAAAATTATGAGCATTAAACTGGG	-	CATTGTTAAAATTATGAGCATTAAACTGGG	novel	Unknown	TCGA-13-0916-01	TCGA-13-0916-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-13-0916-01	Broad	In_Frame_Del	DEL	130502489	130502518	L3MBTL3	6	CATTGTTAAAATTATGAGCATTAAACTGGG	-	CATTGTTAAAATTATGAGCATTAAACTGGG	17
