Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
TCEB3	6924	broad.mit.edu	36	1	23950097	23950097	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Missense_Mutation	SNP	23950097	23950097	TCEB3	1	C	C	A	28
ECM1	1893	broad.mit.edu	36	1	148750178	148750178	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Silent	SNP	148750178	148750178	ECM1	1	A	A	G	6
HRNR	388697	broad.mit.edu	36	1	150459028	150459028	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Missense_Mutation	SNP	150459028	150459028	HRNR	1	C	C	A	18
SMG5	23381	broad.mit.edu	36	1	154496995	154496995	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Silent	SNP	154496995	154496995	SMG5	1	T	T	C	60
ATP1B1	481	broad.mit.edu	36	1	167347334	167347334	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Missense_Mutation	SNP	167347334	167347334	ATP1B1	1	C	C	T	17
MTR	4548	broad.mit.edu	36	1	235082450	235082450	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Silent	SNP	235082450	235082450	MTR	1	T	T	C	52
DNA2	1763	broad.mit.edu	36	10	69888979	69888979	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Missense_Mutation	SNP	69888979	69888979	DNA2	10	G	G	C	45
TACR2	6865	broad.mit.edu	36	10	70836952	70836952	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Missense_Mutation	SNP	70836952	70836952	TACR2	10	C	C	A	30
SH3PXD2A	9644	broad.mit.edu	36	10	105352548	105352548	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Missense_Mutation	SNP	105352548	105352548	SH3PXD2A	10	G	G	A	40
OR56A1	120796	broad.mit.edu	36	11	6005489	6005489	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Missense_Mutation	SNP	6005489	6005489	OR56A1	11	G	G	T	44
LGR4	55366	broad.mit.edu	36	11	27346024	27346024	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Missense_Mutation	SNP	27346024	27346024	LGR4	11	C	C	A	27
FAT3	120114	broad.mit.edu	36	11	92134777	92134777	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Nonsense_Mutation	SNP	92134777	92134777	FAT3	11	C	C	A	18
PRB4	5545	broad.mit.edu	36	12	11352549	11352549	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Missense_Mutation	SNP	11352549	11352549	PRB4	12	T	T	A	52
KCNC2	3747	broad.mit.edu	36	12	73887921	73887921	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Missense_Mutation	SNP	73887921	73887921	KCNC2	12	A	A	G	3
MLNR	2862	broad.mit.edu	36	13	48693313	48693313	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Missense_Mutation	SNP	48693313	48693313	MLNR	13	C	C	T	23
EML5	161436	broad.mit.edu	36	14	88199128	88199128	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Silent	SNP	88199128	88199128	EML5	14	C	C	T	24
BDKRB1	623	broad.mit.edu	36	14	95800521	95800521	+	Missense_Mutation	SNP	C	C	T	rs2229459	byHapMap	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Missense_Mutation	SNP	95800521	95800521	BDKRB1	14	C	C	T	27
TLN2	83660	broad.mit.edu	36	15	60912774	60912774	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Missense_Mutation	SNP	60912774	60912774	TLN2	15	G	G	A	41
MAN2A2	4122	broad.mit.edu	36	15	89255192	89255192	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Missense_Mutation	SNP	89255192	89255192	MAN2A2	15	A	A	C	3
ZNF213	7760	broad.mit.edu	36	16	3130723	3130723	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Silent	SNP	3130723	3130723	ZNF213	16	C	C	T	24
PRSS54	221191	broad.mit.edu	36	16	56885181	56885181	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Missense_Mutation	SNP	56885181	56885181	PRSS54	16	C	C	T	31
NEURL4	84461	broad.mit.edu	36	17	7170587	7170587	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Missense_Mutation	SNP	7170587	7170587	NEURL4	17	C	C	T	19
C17orf39	79018	broad.mit.edu	36	17	17902999	17902999	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Missense_Mutation	SNP	17902999	17902999	C17orf39	17	G	G	A	45
FKBP10	60681	broad.mit.edu	36	17	37230150	37230150	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Silent	SNP	37230150	37230150	FKBP10	17	T	T	G	55
MAP3K14	9020	broad.mit.edu	36	17	40704246	40704248	+	Missense_Mutation	TNP	GGT	GGT	TTG	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Missense_Mutation	TNP	40704246	40704248	MAP3K14	17	GGT	GGT	TTG	43
TANC2	26115	broad.mit.edu	36	17	58849500	58849500	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Missense_Mutation	SNP	58849500	58849500	TANC2	17	G	G	A	35
HMHA1	23526	broad.mit.edu	36	19	1030997	1030997	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Missense_Mutation	SNP	1030997	1030997	HMHA1	19	G	G	C	48
ZNF121	7675	broad.mit.edu	36	19	9538501	9538501	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Silent	SNP	9538501	9538501	ZNF121	19	G	G	C	35
CILP2	148113	broad.mit.edu	36	19	19514197	19514197	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Missense_Mutation	SNP	19514197	19514197	CILP2	19	C	C	G	17
RTN2	6253	broad.mit.edu	36	19	50684556	50684556	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Missense_Mutation	SNP	50684556	50684556	RTN2	19	C	C	T	19
DACT3	147906	broad.mit.edu	36	19	51843780	51843780	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Silent	SNP	51843780	51843780	DACT3	19	G	G	T	35
ZC3H4	23211	broad.mit.edu	36	19	52261899	52261899	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Missense_Mutation	SNP	52261899	52261899	ZC3H4	19	C	C	T	27
TRIM54	57159	broad.mit.edu	36	2	27374970	27374970	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Missense_Mutation	SNP	27374970	27374970	TRIM54	2	C	C	G	30
EPAS1	2034	broad.mit.edu	36	2	46436791	46436792	+	Splice_Site_SNP	DNP	CA	CA	AT	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Splice_Site_SNP	DNP	46436791	46436792	EPAS1	2	CA	CA	AT	21
USP34	9736	broad.mit.edu	36	2	61289609	61289609	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Missense_Mutation	SNP	61289609	61289609	USP34	2	T	T	C	55
LRRTM1	347730	broad.mit.edu	36	2	80382909	80382909	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Missense_Mutation	SNP	80382909	80382909	LRRTM1	2	G	G	T	43
ANKZF1	55139	broad.mit.edu	36	2	219808085	219808085	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Missense_Mutation	SNP	219808085	219808085	ANKZF1	2	G	G	C	46
BPI	671	broad.mit.edu	36	20	36389418	36389418	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Silent	SNP	36389418	36389418	BPI	20	C	C	T	21
RBPJL	11317	broad.mit.edu	36	20	43378933	43378933	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Missense_Mutation	SNP	43378933	43378933	RBPJL	20	G	G	A	38
TXNRD2	10587	broad.mit.edu	36	22	18282746	18282746	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Nonsense_Mutation	SNP	18282746	18282746	TXNRD2	22	G	G	C	44
AIFM3	150209	broad.mit.edu	36	22	19659035	19659035	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Missense_Mutation	SNP	19659035	19659035	AIFM3	22	G	G	T	42
SSTR3	6753	broad.mit.edu	36	22	35933009	35933009	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Silent	SNP	35933009	35933009	SSTR3	22	C	C	A	21
PPP6R2	9701	broad.mit.edu	36	22	49216601	49216601	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Missense_Mutation	SNP	49216601	49216601	PPP6R2	22	C	C	T	23
CHRD	8646	broad.mit.edu	36	3	185585115	185585115	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Missense_Mutation	SNP	185585115	185585115	CHRD	3	G	G	A	39
HTR1A	3350	broad.mit.edu	36	5	63293124	63293124	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Missense_Mutation	SNP	63293124	63293124	HTR1A	5	G	G	A	42
IQGAP2	10788	broad.mit.edu	36	5	76015371	76015371	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Missense_Mutation	SNP	76015371	76015371	IQGAP2	5	G	G	A	45
CD83	9308	broad.mit.edu	36	6	14239789	14239789	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Silent	SNP	14239789	14239789	CD83	6	G	G	A	34
SFRS18	25957	broad.mit.edu	36	6	99962842	99962842	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Missense_Mutation	SNP	99962842	99962842	SFRS18	6	C	C	T	27
TMEM181	57583	broad.mit.edu	36	6	158914445	158914445	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Missense_Mutation	SNP	158914445	158914445	TMEM181	6	C	C	T	27
STEAP2	261729	broad.mit.edu	36	7	89692768	89692768	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Missense_Mutation	SNP	89692768	89692768	STEAP2	7	T	T	C	52
PTDSS1	9791	broad.mit.edu	36	8	97411676	97411676	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Missense_Mutation	SNP	97411676	97411676	PTDSS1	8	C	C	A	18
EHMT1	79813	broad.mit.edu	36	9	139791040	139791040	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Silent	SNP	139791040	139791040	EHMT1	9	C	C	T	21
RAB9A	9367	broad.mit.edu	36	X	13637199	13637199	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Missense_Mutation	SNP	13637199	13637199	RAB9A	23	C	C	T	26
ACOT9	23597	broad.mit.edu	36	X	23633874	23633874	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Missense_Mutation	SNP	23633874	23633874	ACOT9	23	C	C	A	20
IQSEC2	23096	broad.mit.edu	36	X	53296272	53296272	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1431-01	TCGA-24-1431-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1431-01	Broad	Missense_Mutation	SNP	53296272	53296272	IQSEC2	23	C	C	A	32
