Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
EPHB2	2048	broad.mit.edu	36	1	23081500	23081500	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1564-01	TCGA-24-1564-01			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-1564-01	Broad	Silent	SNP	23081500	23081500	EPHB2	1	G	G	A	40
CSMD2	114784	broad.mit.edu	36	1	33849271	33849271	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1564-01	TCGA-24-1564-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1564-01	Broad	Silent	SNP	33849271	33849271	CSMD2	1	G	G	A	38
PLEKHA6	22874	broad.mit.edu	36	1	202481417	202481417	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1564-01	TCGA-24-1564-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1564-01	Broad	Missense_Mutation	SNP	202481417	202481417	PLEKHA6	1	C	C	T	22
ACTN2	88	broad.mit.edu	36	1	234987502	234987502	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1564-01	TCGA-24-1564-01			A	G	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-1564-01	Broad	Missense_Mutation	SNP	234987502	234987502	ACTN2	1	A	A	G	8
NEBL	10529	broad.mit.edu	36	10	21141816	21141816	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1564-01	TCGA-24-1564-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1564-01	Broad	Silent	SNP	21141816	21141816	NEBL	10	G	G	A	40
KIAA0913	23053	broad.mit.edu	36	10	75230191	75230191	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1564-01	TCGA-24-1564-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1564-01	Broad	Missense_Mutation	SNP	75230191	75230191	KIAA0913	10	G	G	A	36
ZDHHC16	84287	broad.mit.edu	36	10	99202176	99202176	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1564-01	TCGA-24-1564-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1564-01	Broad	Silent	SNP	99202176	99202176	ZDHHC16	10	C	C	T	31
OR52E2	119678	broad.mit.edu	36	11	5036540	5036540	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1564-01	TCGA-24-1564-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1564-01	Broad	Silent	SNP	5036540	5036540	OR52E2	11	C	C	T	28
OR5L1	219437	broad.mit.edu	36	11	55335632	55335632	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1564-01	TCGA-24-1564-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1564-01	Broad	Silent	SNP	55335632	55335632	OR5L1	11	G	G	A	40
FTH1	2495	broad.mit.edu	36	11	61488897	61488897	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1564-01	TCGA-24-1564-01			T	C	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-1564-01	Broad	Missense_Mutation	SNP	61488897	61488897	FTH1	11	T	T	C	62
NCAPD3	23310	broad.mit.edu	36	11	133567979	133567979	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1564-01	TCGA-24-1564-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1564-01	Broad	Nonsense_Mutation	SNP	133567979	133567979	NCAPD3	11	C	C	T	18
SLC4A8	9498	broad.mit.edu	36	12	50143749	50143749	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1564-01	TCGA-24-1564-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1564-01	Broad	Missense_Mutation	SNP	50143749	50143749	SLC4A8	12	C	C	G	20
LRP1	4035	broad.mit.edu	36	12	55884553	55884553	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1564-01	TCGA-24-1564-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1564-01	Broad	Missense_Mutation	SNP	55884553	55884553	LRP1	12	A	A	G	2
NBEA	26960	broad.mit.edu	36	13	34583048	34583048	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1564-01	TCGA-24-1564-01			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-1564-01	Broad	Silent	SNP	34583048	34583048	NBEA	13	C	C	T	17
USP8	9101	broad.mit.edu	36	15	48544572	48544572	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1564-01	TCGA-24-1564-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1564-01	Broad	Missense_Mutation	SNP	48544572	48544572	USP8	15	C	C	T	19
MYH11	4629	broad.mit.edu	36	16	15751539	15751539	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1564-01	TCGA-24-1564-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1564-01	Broad	Missense_Mutation	SNP	15751539	15751539	MYH11	16	G	G	A	40
ANKS4B	257629	broad.mit.edu	36	16	21168707	21168707	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1564-01	TCGA-24-1564-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1564-01	Broad	Missense_Mutation	SNP	21168707	21168707	ANKS4B	16	A	A	T	7
ZNF267	10308	broad.mit.edu	36	16	31834990	31834990	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1564-01	TCGA-24-1564-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1564-01	Broad	Missense_Mutation	SNP	31834990	31834990	ZNF267	16	C	C	T	26
TP53	7157	broad.mit.edu	36	17	7519095	7519095	+	Splice_Site_SNP	SNP	C	C	A	novel	Unknown	TCGA-24-1564-01	TCGA-24-1564-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1564-01	Broad	Splice_Site_SNP	SNP	7519095	7519095	TP53	17	C	C	A	18
AP2B1	163	broad.mit.edu	36	17	31001675	31001675	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1564-01	TCGA-24-1564-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1564-01	Broad	Missense_Mutation	SNP	31001675	31001675	AP2B1	17	C	C	G	24
SDK2	54549	broad.mit.edu	36	17	68899226	68899226	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1564-01	TCGA-24-1564-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1564-01	Broad	Silent	SNP	68899226	68899226	SDK2	17	C	C	T	19
INSR	3643	broad.mit.edu	36	19	7103753	7103753	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1564-01	TCGA-24-1564-01			C	G	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-1564-01	Broad	Missense_Mutation	SNP	7103753	7103753	INSR	19	C	C	G	19
CD97	976	broad.mit.edu	36	19	14374441	14374441	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1564-01	TCGA-24-1564-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1564-01	Broad	Missense_Mutation	SNP	14374441	14374441	CD97	19	A	A	G	9
NLRP2	55655	broad.mit.edu	36	19	60204038	60204038	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1564-01	TCGA-24-1564-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1564-01	Broad	Missense_Mutation	SNP	60204038	60204038	NLRP2	19	C	C	A	22
COLEC11	78989	broad.mit.edu	36	2	3669376	3669376	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1564-01	TCGA-24-1564-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1564-01	Broad	Silent	SNP	3669376	3669376	COLEC11	2	C	C	T	31
VRK2	7444	broad.mit.edu	36	2	58129502	58129502	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1564-01	TCGA-24-1564-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1564-01	Broad	Missense_Mutation	SNP	58129502	58129502	VRK2	2	T	T	A	56
PSD4	23550	broad.mit.edu	36	2	113671627	113671627	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1564-01	TCGA-24-1564-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1564-01	Broad	Missense_Mutation	SNP	113671627	113671627	PSD4	2	G	G	A	40
BBS5	129880	broad.mit.edu	36	2	170044343	170044343	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1564-01	TCGA-24-1564-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1564-01	Broad	Missense_Mutation	SNP	170044343	170044343	BBS5	2	G	G	T	41
LPIN3	64900	broad.mit.edu	36	20	39410818	39410818	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1564-01	TCGA-24-1564-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1564-01	Broad	Missense_Mutation	SNP	39410818	39410818	LPIN3	20	G	G	C	40
TMPRSS15	5651	broad.mit.edu	36	21	18607134	18607134	+	Missense_Mutation	SNP	C	C	A	rs34942696	Unknown	TCGA-24-1564-01	TCGA-24-1564-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1564-01	Broad	Missense_Mutation	SNP	18607134	18607134	TMPRSS15	21	C	C	A	24
SYNJ1	8867	broad.mit.edu	36	21	32994229	32994229	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1564-01	TCGA-24-1564-01			A	G	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-1564-01	Broad	Missense_Mutation	SNP	32994229	32994229	SYNJ1	21	A	A	G	4
BACE2	25825	broad.mit.edu	36	21	41531370	41531370	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1564-01	TCGA-24-1564-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1564-01	Broad	Missense_Mutation	SNP	41531370	41531370	BACE2	21	G	G	T	41
MCTP1	79772	broad.mit.edu	36	5	94072289	94072289	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-1564-01	TCGA-24-1564-01			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-1564-01	Broad	Silent	SNP	94072289	94072289	MCTP1	5	G	G	C	41
PRR3	80742	broad.mit.edu	36	6	30638222	30638222	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1564-01	TCGA-24-1564-01			C	G	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-1564-01	Broad	Missense_Mutation	SNP	30638222	30638222	PRR3	6	C	C	G	21
DEFB110	245913	broad.mit.edu	36	6	50097552	50097552	+	Splice_Site_SNP	SNP	C	C	T	novel	Unknown	TCGA-24-1564-01	TCGA-24-1564-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1564-01	Broad	Splice_Site_SNP	SNP	50097552	50097552	DEFB110	6	C	C	T	18
GSTA5	221357	broad.mit.edu	36	6	52804631	52804631	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1564-01	TCGA-24-1564-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1564-01	Broad	Missense_Mutation	SNP	52804631	52804631	GSTA5	6	C	C	T	32
KHDRBS2	202559	broad.mit.edu	36	6	62448834	62448834	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1564-01	TCGA-24-1564-01			C	A	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-1564-01	Broad	Missense_Mutation	SNP	62448834	62448834	KHDRBS2	6	C	C	A	32
CACNA2D1	781	broad.mit.edu	36	7	81552087	81552087	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1564-01	TCGA-24-1564-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1564-01	Broad	Missense_Mutation	SNP	81552087	81552087	CACNA2D1	7	C	C	T	31
SLC26A3	1811	broad.mit.edu	36	7	107215046	107215046	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1564-01	TCGA-24-1564-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1564-01	Broad	Missense_Mutation	SNP	107215046	107215046	SLC26A3	7	A	A	C	4
REPIN1	29803	broad.mit.edu	36	7	149699714	149699714	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1564-01	TCGA-24-1564-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1564-01	Broad	Missense_Mutation	SNP	149699714	149699714	REPIN1	7	G	G	A	37
MYOM2	9172	broad.mit.edu	36	8	1993181	1993181	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1564-01	TCGA-24-1564-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1564-01	Broad	Missense_Mutation	SNP	1993181	1993181	MYOM2	8	T	T	G	52
CNBD1	168975	broad.mit.edu	36	8	87968945	87968945	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1564-01	TCGA-24-1564-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1564-01	Broad	Missense_Mutation	SNP	87968945	87968945	CNBD1	8	G	G	C	35
TLE1	7088	broad.mit.edu	36	9	83390311	83390311	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1564-01	TCGA-24-1564-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1564-01	Broad	Missense_Mutation	SNP	83390311	83390311	TLE1	9	A	A	T	6
ACE2	59272	broad.mit.edu	36	X	15503803	15503803	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1564-01	TCGA-24-1564-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1564-01	Broad	Missense_Mutation	SNP	15503803	15503803	ACE2	23	A	A	G	7
HEPH	9843	broad.mit.edu	36	X	65307207	65307207	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1564-01	TCGA-24-1564-01			G	T	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-1564-01	Broad	Missense_Mutation	SNP	65307207	65307207	HEPH	23	G	G	T	34
KIAA1210	57481	broad.mit.edu	36	X	118134644	118134644	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1564-01	TCGA-24-1564-01			A	C	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-1564-01	Broad	Missense_Mutation	SNP	118134644	118134644	KIAA1210	23	A	A	C	8
