Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
MTOR	2475	broad.mit.edu	36	1	11195525	11195525	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Missense_Mutation	SNP	11195525	11195525	MTOR	1	C	C	T	27
HAO2	51179	broad.mit.edu	36	1	119737936	119737936	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Missense_Mutation	SNP	119737936	119737936	HAO2	1	C	C	T	23
PGLYRP4	57115	broad.mit.edu	36	1	151584458	151584458	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Missense_Mutation	SNP	151584458	151584458	PGLYRP4	1	G	G	A	40
DCST1	149095	broad.mit.edu	36	1	153280863	153280863	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Silent	SNP	153280863	153280863	DCST1	1	G	G	A	34
CHRM3	1131	broad.mit.edu	36	1	238138838	238138838	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Silent	SNP	238138838	238138838	CHRM3	1	A	A	G	3
FAM171A1	221061	broad.mit.edu	36	10	15296558	15296558	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Silent	SNP	15296558	15296558	FAM171A1	10	A	A	G	7
MYBPC3	4607	broad.mit.edu	36	11	47310321	47310321	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Missense_Mutation	SNP	47310321	47310321	MYBPC3	11	C	C	T	28
TNKS1BP1	85456	broad.mit.edu	36	11	56837572	56837572	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Missense_Mutation	SNP	56837572	56837572	TNKS1BP1	11	C	C	T	23
HRASLS5	117245	broad.mit.edu	36	11	62990168	62990168	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Missense_Mutation	SNP	62990168	62990168	HRASLS5	11	C	C	T	23
CLIP1	6249	broad.mit.edu	36	12	121404952	121404952	+	Splice_Site_SNP	SNP	C	C	T	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Splice_Site_SNP	SNP	121404952	121404952	CLIP1	12	C	C	T	18
SCEL	8796	broad.mit.edu	36	13	77074835	77074835	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Missense_Mutation	SNP	77074835	77074835	SCEL	13	T	T	A	49
SRL	6345	broad.mit.edu	36	16	4182678	4182678	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Missense_Mutation	SNP	4182678	4182678	SRL	16	G	G	A	39
CDH8	1006	broad.mit.edu	36	16	60412406	60412406	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Missense_Mutation	SNP	60412406	60412406	CDH8	16	G	G	C	37
ATP2A3	489	broad.mit.edu	36	17	3797746	3797746	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Silent	SNP	3797746	3797746	ATP2A3	17	G	G	T	43
TP53	7157	broad.mit.edu	36	17	7518284	7518284	+	Missense_Mutation	SNP	G	G	A	rs28934573	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Missense_Mutation	SNP	7518284	7518284	TP53	17	G	G	A	41
MYH1	4619	broad.mit.edu	36	17	10336548	10336548	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Silent	SNP	10336548	10336548	MYH1	17	G	G	A	39
MC5R	4161	broad.mit.edu	36	18	13816571	13816571	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Silent	SNP	13816571	13816571	MC5R	18	C	C	T	20
DENND1C	79958	broad.mit.edu	36	19	6418577	6418577	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Nonsense_Mutation	SNP	6418577	6418577	DENND1C	19	G	G	A	45
CLIP3	25999	broad.mit.edu	36	19	41200677	41200677	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Missense_Mutation	SNP	41200677	41200677	CLIP3	19	C	C	T	26
INSIG2	51141	broad.mit.edu	36	2	118577263	118577263	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Missense_Mutation	SNP	118577263	118577263	INSIG2	2	C	C	G	22
YSK4	80122	broad.mit.edu	36	2	135495793	135495793	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Missense_Mutation	SNP	135495793	135495793	YSK4	2	T	T	A	64
MYO3B	140469	broad.mit.edu	36	2	170957158	170957158	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Silent	SNP	170957158	170957158	MYO3B	2	A	A	T	9
FKBP7	51661	broad.mit.edu	36	2	179051426	179051426	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Missense_Mutation	SNP	179051426	179051426	FKBP7	2	T	T	A	49
TTN	7273	broad.mit.edu	36	2	179341743	179341743	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Missense_Mutation	SNP	179341743	179341743	TTN	2	G	G	A	48
MDH1B	130752	broad.mit.edu	36	2	207328020	207328021	+	Missense_Mutation	DNP	CT	CT	TA	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Missense_Mutation	DNP	207328020	207328021	MDH1B	2	CT	CT	TA	28
C2orf67	151050	broad.mit.edu	36	2	210597005	210597005	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Silent	SNP	210597005	210597005	C2orf67	2	G	G	C	47
EMILIN3	90187	broad.mit.edu	36	20	39423778	39423778	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Silent	SNP	39423778	39423778	EMILIN3	20	G	G	C	47
MASP1	5648	broad.mit.edu	36	3	188452221	188452221	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Silent	SNP	188452221	188452221	MASP1	3	T	T	C	55
PLEKHG4B	153478	broad.mit.edu	36	5	209195	209195	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Nonsense_Mutation	SNP	209195	209195	PLEKHG4B	5	G	G	T	37
LIFR	3977	broad.mit.edu	36	5	38559435	38559435	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Missense_Mutation	SNP	38559435	38559435	LIFR	5	A	A	T	4
PLK2	10769	broad.mit.edu	36	5	57787629	57787629	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Missense_Mutation	SNP	57787629	57787629	PLK2	5	G	G	C	34
PCDHGA11	56105	broad.mit.edu	36	5	140781683	140781683	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Missense_Mutation	SNP	140781683	140781683	PCDHGA11	5	T	T	G	51
SLC36A3	285641	broad.mit.edu	36	5	150637392	150637392	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Missense_Mutation	SNP	150637392	150637392	SLC36A3	5	G	G	A	39
KIAA1191	57179	broad.mit.edu	36	5	175707319	175707319	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Missense_Mutation	SNP	175707319	175707319	KIAA1191	5	A	A	C	3
GCM2	9247	broad.mit.edu	36	6	10983140	10983140	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Missense_Mutation	SNP	10983140	10983140	GCM2	6	G	G	C	45
UBR2	23304	broad.mit.edu	36	6	42758817	42758817	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Missense_Mutation	SNP	42758817	42758817	UBR2	6	G	G	T	33
C6orf142	90523	broad.mit.edu	36	6	54097511	54097511	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Silent	SNP	54097511	54097511	C6orf142	6	G	G	A	40
PDSS2	57107	broad.mit.edu	36	6	107702082	107702082	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Silent	SNP	107702082	107702082	PDSS2	6	A	A	C	11
GAL3ST4	79690	broad.mit.edu	36	7	99595804	99595804	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Missense_Mutation	SNP	99595804	99595804	GAL3ST4	7	C	C	G	32
RELN	5649	broad.mit.edu	36	7	103089058	103089058	+	Splice_Site_SNP	SNP	C	C	T	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Splice_Site_SNP	SNP	103089058	103089058	RELN	7	C	C	T	18
RHOBTB2	23221	broad.mit.edu	36	8	22920504	22920504	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Silent	SNP	22920504	22920504	RHOBTB2	8	C	C	T	19
KCNK9	51305	broad.mit.edu	36	8	140699945	140699945	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Missense_Mutation	SNP	140699945	140699945	KCNK9	8	G	G	A	38
TRPM3	80036	broad.mit.edu	36	9	72341321	72341321	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Missense_Mutation	SNP	72341321	72341321	TRPM3	9	G	G	A	38
GNA14	9630	broad.mit.edu	36	9	79228878	79228878	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Missense_Mutation	SNP	79228878	79228878	GNA14	9	C	C	T	32
PHF2	5253	broad.mit.edu	36	9	95475949	95475949	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Silent	SNP	95475949	95475949	PHF2	9	C	C	T	29
ZNF189	7743	broad.mit.edu	36	9	103210725	103210725	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Missense_Mutation	SNP	103210725	103210725	ZNF189	9	A	A	G	11
KIAA0649	9858	broad.mit.edu	36	9	137518017	137518017	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Missense_Mutation	SNP	137518017	137518017	KIAA0649	9	G	G	C	44
C9orf116	138162	broad.mit.edu	36	9	137527226	137527226	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Missense_Mutation	SNP	137527226	137527226	C9orf116	9	C	C	A	17
KAL1	3730	broad.mit.edu	36	X	8513413	8513413	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Missense_Mutation	SNP	8513413	8513413	KAL1	23	T	T	A	58
MAP3K15	389840	broad.mit.edu	36	X	19290873	19290873	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Missense_Mutation	SNP	19290873	19290873	MAP3K15	23	C	C	G	20
FAM47C	442444	broad.mit.edu	36	X	36936626	36936626	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Silent	SNP	36936626	36936626	FAM47C	23	C	C	T	19
UPF3B	65109	broad.mit.edu	36	X	118859110	118859110	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2254-01	Broad	Missense_Mutation	SNP	118859110	118859110	UPF3B	23	C	C	T	32
PSG9	5678	broad.mit.edu	36	19	48463817	48463818	+	Frame_Shift_Ins	INS	-	C	-	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-24-2254-01	Broad	Frame_Shift_Ins	INS	48463817	48463818	PSG9	19	-	C	-	54
SAP130	79595	broad.mit.edu	36	2	128470461	128470473	+	Frame_Shift_Del	DEL	GGCTACTCCTCTC	-	GGCTACTCCTCTC	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-24-2254-01	Broad	Frame_Shift_Del	DEL	128470461	128470473	SAP130	2	GGCTACTCCTCTC	-	GGCTACTCCTCTC	35
COL6A6	131873	broad.mit.edu	36	3	131767102	131767120	+	Frame_Shift_Del	DEL	ACACACAGTCTCTGTCTTT	-	ACACACAGTCTCTGTCTTT	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-24-2254-01	Broad	Frame_Shift_Del	DEL	131767102	131767120	COL6A6	3	ACACACAGTCTCTGTCTTT	-	ACACACAGTCTCTGTCTTT	6
ARHGAP18	93663	broad.mit.edu	36	6	130001292	130001292	+	Frame_Shift_Del	DEL	T	-	T	novel	Unknown	TCGA-24-2254-01	TCGA-24-2254-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-24-2254-01	Broad	Frame_Shift_Del	DEL	130001292	130001292	ARHGAP18	6	T	-	T	60
