Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
SMAP2	64744	broad.mit.edu	36	1	40651355	40651355	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Silent	SNP	40651355	40651355	SMAP2	1	G	G	A	45
KLF17	128209	broad.mit.edu	36	1	44367741	44367741	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Missense_Mutation	SNP	44367741	44367741	KLF17	1	C	C	A	22
BCAN	63827	broad.mit.edu	36	1	154888064	154888064	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Missense_Mutation	SNP	154888064	154888064	BCAN	1	C	C	G	30
DUSP27	92235	broad.mit.edu	36	1	165363449	165363449	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Silent	SNP	165363449	165363449	DUSP27	1	C	C	A	21
MYOC	4653	broad.mit.edu	36	1	169872085	169872085	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Missense_Mutation	SNP	169872085	169872085	MYOC	1	C	C	A	21
IL24	11009	broad.mit.edu	36	1	205142011	205142011	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Missense_Mutation	SNP	205142011	205142011	IL24	1	T	T	A	60
YOD1	55432	broad.mit.edu	36	1	205289203	205289203	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Missense_Mutation	SNP	205289203	205289203	YOD1	1	G	G	T	41
YOD1	55432	broad.mit.edu	36	1	205290841	205290841	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Missense_Mutation	SNP	205290841	205290841	YOD1	1	G	G	C	42
RYR2	6262	broad.mit.edu	36	1	235947210	235947210	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Missense_Mutation	SNP	235947210	235947210	RYR2	1	G	G	C	34
UNC5B	219699	broad.mit.edu	36	10	72717487	72717487	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Missense_Mutation	SNP	72717487	72717487	UNC5B	10	G	G	A	42
CCDC147	159686	broad.mit.edu	36	10	106142137	106142137	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Missense_Mutation	SNP	106142137	106142137	CCDC147	10	G	G	T	42
PAOX	196743	broad.mit.edu	36	10	135043934	135043934	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Missense_Mutation	SNP	135043934	135043934	PAOX	10	T	T	C	64
LRRC4C	57689	broad.mit.edu	36	11	40093534	40093534	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Silent	SNP	40093534	40093534	LRRC4C	11	C	C	T	30
C11orf82	220042	broad.mit.edu	36	11	82322093	82322093	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Missense_Mutation	SNP	82322093	82322093	C11orf82	11	A	A	T	8
CTSC	1075	broad.mit.edu	36	11	87682116	87682116	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Nonsense_Mutation	SNP	87682116	87682116	CTSC	11	G	G	T	48
C11orf70	85016	broad.mit.edu	36	11	101442564	101442564	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Missense_Mutation	SNP	101442564	101442564	C11orf70	11	C	C	T	21
WNK1	65125	broad.mit.edu	36	12	875810	875810	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Missense_Mutation	SNP	875810	875810	WNK1	12	A	A	G	5
OR6C75	390323	broad.mit.edu	36	12	54045240	54045240	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Missense_Mutation	SNP	54045240	54045240	OR6C75	12	A	A	G	8
ARHGAP9	64333	broad.mit.edu	36	12	56159424	56159424	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Missense_Mutation	SNP	56159424	56159424	ARHGAP9	12	C	C	A	22
CENPJ	55835	broad.mit.edu	36	13	24385017	24385017	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Silent	SNP	24385017	24385017	CENPJ	13	G	G	A	48
ERCC5	2073	broad.mit.edu	36	13	102325926	102325926	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Missense_Mutation	SNP	102325926	102325926	ERCC5	13	C	C	T	32
LTB4R2	56413	broad.mit.edu	36	14	23849749	23849749	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Silent	SNP	23849749	23849749	LTB4R2	14	G	G	A	46
ADAM10	102	broad.mit.edu	36	15	56720384	56720384	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Missense_Mutation	SNP	56720384	56720384	ADAM10	15	T	T	A	56
DNAH3	55567	broad.mit.edu	36	16	20938623	20938623	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Missense_Mutation	SNP	20938623	20938623	DNAH3	16	A	A	T	11
USP31	57478	broad.mit.edu	36	16	22988358	22988358	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Missense_Mutation	SNP	22988358	22988358	USP31	16	C	C	T	26
SULT1A1	6817	broad.mit.edu	36	16	28527166	28527166	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Missense_Mutation	SNP	28527166	28527166	SULT1A1	16	T	T	C	58
ITGAM	3684	broad.mit.edu	36	16	31240176	31240176	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Silent	SNP	31240176	31240176	ITGAM	16	G	G	T	42
MT1B	4490	broad.mit.edu	36	16	55243995	55243995	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Missense_Mutation	SNP	55243995	55243995	MT1B	16	G	G	T	46
KCTD19	146212	broad.mit.edu	36	16	65893250	65893250	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Missense_Mutation	SNP	65893250	65893250	KCTD19	16	T	T	G	64
YWHAE	7531	broad.mit.edu	36	17	1215037	1215037	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Missense_Mutation	SNP	1215037	1215037	YWHAE	17	G	G	A	35
TP53	7157	broad.mit.edu	36	17	7518993	7518993	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Missense_Mutation	SNP	7518993	7518993	TP53	17	A	A	C	3
PER1	5187	broad.mit.edu	36	17	7987845	7987845	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Nonsense_Mutation	SNP	7987845	7987845	PER1	17	G	G	A	47
MYH13	8735	broad.mit.edu	36	17	10168138	10168138	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Missense_Mutation	SNP	10168138	10168138	MYH13	17	G	G	C	33
KRT12	3859	broad.mit.edu	36	17	36273065	36273065	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Silent	SNP	36273065	36273065	KRT12	17	C	C	G	17
HAP1	9001	broad.mit.edu	36	17	37137979	37137979	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Missense_Mutation	SNP	37137979	37137979	HAP1	17	C	C	G	21
RUNDC3A	10900	broad.mit.edu	36	17	39746378	39746378	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Missense_Mutation	SNP	39746378	39746378	RUNDC3A	17	C	C	T	27
FARSA	2193	broad.mit.edu	36	19	12896065	12896065	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Missense_Mutation	SNP	12896065	12896065	FARSA	19	C	C	A	18
FKBP8	23770	broad.mit.edu	36	19	18511469	18511469	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Silent	SNP	18511469	18511469	FKBP8	19	G	G	C	45
MAPRE3	22924	broad.mit.edu	36	2	27102380	27102380	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Silent	SNP	27102380	27102380	MAPRE3	2	C	C	T	29
FAM161A	84140	broad.mit.edu	36	2	61920995	61920995	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Missense_Mutation	SNP	61920995	61920995	FAM161A	2	A	A	C	16
ANKRD57	65124	broad.mit.edu	36	2	109730442	109730442	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Missense_Mutation	SNP	109730442	109730442	ANKRD57	2	G	G	A	42
TANC1	85461	broad.mit.edu	36	2	159794846	159794846	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Nonsense_Mutation	SNP	159794846	159794846	TANC1	2	C	C	T	29
TTN	7273	broad.mit.edu	36	2	179133837	179133837	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Missense_Mutation	SNP	179133837	179133837	TTN	2	C	C	A	31
PROKR2	128674	broad.mit.edu	36	20	5242722	5242722	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Silent	SNP	5242722	5242722	PROKR2	20	G	G	A	39
PHF20	51230	broad.mit.edu	36	20	33990179	33990179	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Missense_Mutation	SNP	33990179	33990179	PHF20	20	T	T	A	59
MRPL39	54148	broad.mit.edu	36	21	25887033	25887033	+	Missense_Mutation	SNP	G	G	C	rs61735761	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Missense_Mutation	SNP	25887033	25887033	MRPL39	21	G	G	C	40
SH3BP5	9467	broad.mit.edu	36	3	15273559	15273559	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Nonsense_Mutation	SNP	15273559	15273559	SH3BP5	3	G	G	A	47
ANKRD28	23243	broad.mit.edu	36	3	15724566	15724566	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Silent	SNP	15724566	15724566	ANKRD28	3	C	C	T	25
SCN5A	6331	broad.mit.edu	36	3	38567056	38567056	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Silent	SNP	38567056	38567056	SCN5A	3	G	G	A	39
TM4SF4	7104	broad.mit.edu	36	3	150699338	150699338	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Missense_Mutation	SNP	150699338	150699338	TM4SF4	3	G	G	T	47
CLDN11	5010	broad.mit.edu	36	3	171633065	171633065	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Missense_Mutation	SNP	171633065	171633065	CLDN11	3	A	A	G	8
TRA2B	6434	broad.mit.edu	36	3	187122592	187122592	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Missense_Mutation	SNP	187122592	187122592	TRA2B	3	T	T	C	52
GRK6	2870	broad.mit.edu	36	5	176790490	176790490	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Missense_Mutation	SNP	176790490	176790490	GRK6	5	A	A	T	1
LRRC16A	55604	broad.mit.edu	36	6	25625596	25625596	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Silent	SNP	25625596	25625596	LRRC16A	6	T	T	C	62
MAD1L1	8379	broad.mit.edu	36	7	2222320	2222320	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Silent	SNP	2222320	2222320	MAD1L1	7	C	C	A	25
ABCB5	340273	broad.mit.edu	36	7	20651927	20651927	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Missense_Mutation	SNP	20651927	20651927	ABCB5	7	G	G	T	35
NPC1L1	29881	broad.mit.edu	36	7	44545867	44545867	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Silent	SNP	44545867	44545867	NPC1L1	7	G	G	T	45
MUC17	140453	broad.mit.edu	36	7	100472480	100472480	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Missense_Mutation	SNP	100472480	100472480	MUC17	7	C	C	A	19
ZBTB10	65986	broad.mit.edu	36	8	81593361	81593361	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Nonsense_Mutation	SNP	81593361	81593361	ZBTB10	8	G	G	A	47
PKHD1L1	93035	broad.mit.edu	36	8	110466974	110466974	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Missense_Mutation	SNP	110466974	110466974	PKHD1L1	8	A	A	T	6
PTPRD	5789	broad.mit.edu	36	9	8487241	8487241	+	Splice_Site_SNP	SNP	C	C	A	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Splice_Site_SNP	SNP	8487241	8487241	PTPRD	9	C	C	A	17
ZNF79	7633	broad.mit.edu	36	9	129238088	129238088	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Nonsense_Mutation	SNP	129238088	129238088	ZNF79	9	C	C	T	27
WNK3	65267	broad.mit.edu	36	X	54337938	54337938	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Missense_Mutation	SNP	54337938	54337938	WNK3	23	G	G	A	40
XKRX	402415	broad.mit.edu	36	X	100056313	100056313	+	Silent	SNP	G	G	T	rs61740851	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Silent	SNP	100056313	100056313	XKRX	23	G	G	T	37
DCAF12L2	340578	broad.mit.edu	36	X	125127403	125127403	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-30-1891-01	Broad	Silent	SNP	125127403	125127403	DCAF12L2	23	C	C	A	27
DDX60L	91351	broad.mit.edu	36	4	169610856	169610882	+	In_Frame_Del	DEL	TAAGAAAGAATCACTGTTCCTAATCCA	-	TAAGAAAGAATCACTGTTCCTAATCCA	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-30-1891-01	Broad	In_Frame_Del	DEL	169610856	169610882	DDX60L	4	TAAGAAAGAATCACTGTTCCTAATCCA	-	TAAGAAAGAATCACTGTTCCTAATCCA	61
LATS1	9113	broad.mit.edu	36	6	150064723	150064723	+	Frame_Shift_Del	DEL	A	-	A	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-30-1891-01	Broad	Frame_Shift_Del	DEL	150064723	150064723	LATS1	6	A	-	A	5
SAMD9L	219285	broad.mit.edu	36	7	92601563	92601564	+	Frame_Shift_Ins	INS	-	C	-	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-30-1891-01	Broad	Frame_Shift_Ins	INS	92601563	92601564	SAMD9L	7	-	C	-	6
BCORL1	63035	broad.mit.edu	36	X	128977107	128977122	+	Frame_Shift_Del	DEL	GCTCCTTCGTTCCAGA	-	GCTCCTTCGTTCCAGA	novel	Unknown	TCGA-30-1891-01	TCGA-30-1891-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-30-1891-01	Broad	Frame_Shift_Del	DEL	128977107	128977122	BCORL1	23	GCTCCTTCGTTCCAGA	-	GCTCCTTCGTTCCAGA	42
