Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
CMPK1	51727	broad.mit.edu	36	1	47611278	47611278	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2000-01	Broad	Missense_Mutation	SNP	47611278	47611278	CMPK1	1	G	G	T	33
FNDC7	163479	broad.mit.edu	36	1	109075033	109075033	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2000-01	Broad	Silent	SNP	109075033	109075033	FNDC7	1	C	C	A	23
CA14	23632	broad.mit.edu	36	1	148502146	148502146	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2000-01	Broad	Missense_Mutation	SNP	148502146	148502146	CA14	1	C	C	T	31
FAM5C	339479	broad.mit.edu	36	1	188500691	188500691	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2000-01	Broad	Missense_Mutation	SNP	188500691	188500691	FAM5C	1	G	G	A	34
GGPS1	9453	broad.mit.edu	36	1	233565205	233565205	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2000-01	Broad	Missense_Mutation	SNP	233565205	233565205	GGPS1	1	G	G	C	47
MYO3A	53904	broad.mit.edu	36	10	26326104	26326104	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2000-01	Broad	Missense_Mutation	SNP	26326104	26326104	MYO3A	10	A	A	T	8
RPS24	6229	broad.mit.edu	36	10	79465318	79465318	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2000-01	Broad	Missense_Mutation	SNP	79465318	79465318	RPS24	10	C	C	G	17
OR10AG1	282770	broad.mit.edu	36	11	55492348	55492348	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2000-01	Broad	Silent	SNP	55492348	55492348	OR10AG1	11	A	A	G	4
SLCO2B1	11309	broad.mit.edu	36	11	74557927	74557927	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2000-01	Broad	Silent	SNP	74557927	74557927	SLCO2B1	11	G	G	C	39
FMNL3	91010	broad.mit.edu	36	12	48332205	48332205	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2000-01	Broad	Missense_Mutation	SNP	48332205	48332205	FMNL3	12	T	T	C	62
STAT6	6778	broad.mit.edu	36	12	55788296	55788296	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2000-01	Broad	Silent	SNP	55788296	55788296	STAT6	12	G	G	A	43
C12orf34	84915	broad.mit.edu	36	12	108690738	108690738	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2000-01	Broad	Missense_Mutation	SNP	108690738	108690738	C12orf34	12	C	C	G	18
CDK8	1024	broad.mit.edu	36	13	25854987	25854987	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2000-01	Broad	Missense_Mutation	SNP	25854987	25854987	CDK8	13	G	G	C	45
RCBTB1	55213	broad.mit.edu	36	13	49013926	49013926	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2000-01	Broad	Missense_Mutation	SNP	49013926	49013926	RCBTB1	13	T	T	G	52
AP3S2	10239	broad.mit.edu	36	15	88215757	88215757	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2000-01	Broad	Missense_Mutation	SNP	88215757	88215757	AP3S2	15	C	C	T	17
MYH11	4629	broad.mit.edu	36	16	15749460	15749460	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2000-01	Broad	Missense_Mutation	SNP	15749460	15749460	MYH11	16	G	G	A	37
AP1G1	164	broad.mit.edu	36	16	70365879	70365879	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2000-01	Broad	Missense_Mutation	SNP	70365879	70365879	AP1G1	16	T	T	G	49
FOXC2	2303	broad.mit.edu	36	16	85158901	85158901	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2000-01	Broad	Nonsense_Mutation	SNP	85158901	85158901	FOXC2	16	C	C	G	17
TP53	7157	broad.mit.edu	36	17	7519261	7519261	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2000-01	Broad	Missense_Mutation	SNP	7519261	7519261	TP53	17	T	T	C	63
GAA	2548	broad.mit.edu	36	17	75696026	75696026	+	Nonsense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2000-01	Broad	Nonsense_Mutation	SNP	75696026	75696026	GAA	17	T	T	G	49
MYO5B	4645	broad.mit.edu	36	18	45686875	45686875	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2000-01	Broad	Missense_Mutation	SNP	45686875	45686875	MYO5B	18	G	G	A	39
MAP1S	55201	broad.mit.edu	36	19	17706155	17706155	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2000-01	Broad	Missense_Mutation	SNP	17706155	17706155	MAP1S	19	C	C	T	27
APOB	338	broad.mit.edu	36	2	21095401	21095401	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2000-01	Broad	Missense_Mutation	SNP	21095401	21095401	APOB	2	A	A	C	6
PLB1	151056	broad.mit.edu	36	2	28654515	28654515	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2000-01	Broad	Missense_Mutation	SNP	28654515	28654515	PLB1	2	A	A	G	12
RASGRP3	25780	broad.mit.edu	36	2	33605748	33605748	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2000-01	Broad	Missense_Mutation	SNP	33605748	33605748	RASGRP3	2	A	A	G	4
KRTAP19-4	337971	broad.mit.edu	36	21	30791058	30791058	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2000-01	Broad	Nonsense_Mutation	SNP	30791058	30791058	KRTAP19-4	21	A	A	T	13
TTLL8	164714	broad.mit.edu	36	22	48812614	48812614	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2000-01	Broad	Silent	SNP	48812614	48812614	TTLL8	22	C	C	A	21
CHDH	55349	broad.mit.edu	36	3	53827159	53827159	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2000-01	Broad	Silent	SNP	53827159	53827159	CHDH	3	G	G	A	42
H1FX	8971	broad.mit.edu	36	3	130517372	130517372	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2000-01	Broad	Missense_Mutation	SNP	130517372	130517372	H1FX	3	T	T	G	58
UGT2A1	10941	broad.mit.edu	36	4	70547567	70547567	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2000-01	Broad	Missense_Mutation	SNP	70547567	70547567	UGT2A1	4	C	C	A	19
GUCY1B3	2983	broad.mit.edu	36	4	156943004	156943004	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2000-01	Broad	Silent	SNP	156943004	156943004	GUCY1B3	4	G	G	A	46
GRIA2	2891	broad.mit.edu	36	4	158473930	158473930	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2000-01	Broad	Missense_Mutation	SNP	158473930	158473930	GRIA2	4	A	A	T	11
TRPC7	57113	broad.mit.edu	36	5	135679364	135679364	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2000-01	Broad	Silent	SNP	135679364	135679364	TRPC7	5	G	G	A	40
PCDHGA10	56106	broad.mit.edu	36	5	140773042	140773042	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2000-01	Broad	Missense_Mutation	SNP	140773042	140773042	PCDHGA10	5	T	T	G	52
CSF1R	1436	broad.mit.edu	36	5	149440663	149440663	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2000-01	Broad	Missense_Mutation	SNP	149440663	149440663	CSF1R	5	G	G	C	35
THBS2	7058	broad.mit.edu	36	6	169390614	169390614	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2000-01	Broad	Silent	SNP	169390614	169390614	THBS2	6	C	C	T	21
DNAH11	8701	broad.mit.edu	36	7	21795470	21795470	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2000-01	Broad	Silent	SNP	21795470	21795470	DNAH11	7	C	C	T	29
DBF4	10926	broad.mit.edu	36	7	87374784	87374784	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2000-01	Broad	Silent	SNP	87374784	87374784	DBF4	7	C	C	G	23
LZTS1	11178	broad.mit.edu	36	8	20154665	20154666	+	Missense_Mutation	DNP	TG	TG	AC	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2000-01	Broad	Missense_Mutation	DNP	20154665	20154666	LZTS1	8	TG	TG	AC	51
XPO7	23039	broad.mit.edu	36	8	21917387	21917387	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2000-01	Broad	Missense_Mutation	SNP	21917387	21917387	XPO7	8	G	G	C	48
ACO1	48	broad.mit.edu	36	9	32398612	32398612	+	Missense_Mutation	SNP	G	G	T	rs41304757	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2000-01	Broad	Missense_Mutation	SNP	32398612	32398612	ACO1	9	G	G	T	48
VSIG4	11326	broad.mit.edu	36	X	65170331	65170331	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2000-01	Broad	Missense_Mutation	SNP	65170331	65170331	VSIG4	23	C	C	T	25
CXorf26	51260	broad.mit.edu	36	X	75311718	75311718	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2000-01	Broad	Silent	SNP	75311718	75311718	CXorf26	23	A	A	T	8
P2RY10	27334	broad.mit.edu	36	X	78102820	78102820	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2000-01	Broad	Silent	SNP	78102820	78102820	P2RY10	23	T	T	A	62
GAB3	139716	broad.mit.edu	36	X	153577485	153577485	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2000-01	Broad	Missense_Mutation	SNP	153577485	153577485	GAB3	23	A	A	T	10
CAMK2B	816	broad.mit.edu	36	7	44253290	44253301	+	In_Frame_Del	DEL	GCCTCCAGGATC	-	GCCTCCAGGATC	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-61-2000-01	Broad	In_Frame_Del	DEL	44253290	44253301	CAMK2B	7	GCCTCCAGGATC	-	GCCTCCAGGATC	42
OR4F21	441308	broad.mit.edu	36	8	106893	106894	+	Frame_Shift_Del	DEL	GA	-	GA	novel	Unknown	TCGA-61-2000-01	TCGA-61-2000-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-61-2000-01	Broad	Frame_Shift_Del	DEL	106893	106894	OR4F21	8	GA	-	GA	45
