Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
CELA2A	63036	broad.mit.edu	36	1	15666565	15666565	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Missense_Mutation	SNP	15666565	15666565	CELA2A	1	A	A	G	14
GRIK3	2899	broad.mit.edu	36	1	37118979	37118979	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Silent	SNP	37118979	37118979	GRIK3	1	G	G	A	43
RPS8	6202	broad.mit.edu	36	1	45016021	45016021	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Silent	SNP	45016021	45016021	RPS8	1	C	C	T	22
BEST4	266675	broad.mit.edu	36	1	45023441	45023441	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Missense_Mutation	SNP	45023441	45023441	BEST4	1	C	C	G	28
CDKN2C	1031	broad.mit.edu	36	1	51208750	51208750	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Missense_Mutation	SNP	51208750	51208750	CDKN2C	1	C	C	G	27
NEXN	91624	broad.mit.edu	36	1	78155936	78155936	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Missense_Mutation	SNP	78155936	78155936	NEXN	1	G	G	T	35
MCOLN2	255231	broad.mit.edu	36	1	85169778	85169778	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Missense_Mutation	SNP	85169778	85169778	MCOLN2	1	A	A	G	1
LRRC39	127495	broad.mit.edu	36	1	100398634	100398634	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Silent	SNP	100398634	100398634	LRRC39	1	C	C	T	29
CD101	9398	broad.mit.edu	36	1	117355939	117355939	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Missense_Mutation	SNP	117355939	117355939	CD101	1	G	G	C	34
HMCN1	83872	broad.mit.edu	36	1	184301077	184301077	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Missense_Mutation	SNP	184301077	184301077	HMCN1	1	G	G	A	40
B3GALT2	8707	broad.mit.edu	36	1	191416309	191416309	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Missense_Mutation	SNP	191416309	191416309	B3GALT2	1	C	C	A	19
MGMT	4255	broad.mit.edu	36	10	131396251	131396251	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Silent	SNP	131396251	131396251	MGMT	10	C	C	T	31
EFEMP2	30008	broad.mit.edu	36	11	65391929	65391929	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Silent	SNP	65391929	65391929	EFEMP2	11	C	C	T	27
CACNA1C	775	broad.mit.edu	36	12	2645016	2645016	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Silent	SNP	2645016	2645016	CACNA1C	12	C	C	T	18
ERGIC2	51290	broad.mit.edu	36	12	29401902	29401902	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Silent	SNP	29401902	29401902	ERGIC2	12	T	T	G	53
MDM1	56890	broad.mit.edu	36	12	66977002	66977002	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Missense_Mutation	SNP	66977002	66977002	MDM1	12	T	T	A	55
CIT	11113	broad.mit.edu	36	12	118619884	118619884	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Missense_Mutation	SNP	118619884	118619884	CIT	12	C	C	T	23
GPR109A	338442	broad.mit.edu	36	12	121753766	121753766	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Silent	SNP	121753766	121753766	GPR109A	12	C	C	T	25
NIACR2	8843	broad.mit.edu	36	12	121767220	121767220	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Silent	SNP	121767220	121767220	NIACR2	12	C	C	T	25
TBC1D4	9882	broad.mit.edu	36	13	74771643	74771643	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Missense_Mutation	SNP	74771643	74771643	TBC1D4	13	G	G	C	35
RNASE9	390443	broad.mit.edu	36	14	20094690	20094690	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Missense_Mutation	SNP	20094690	20094690	RNASE9	14	T	T	G	52
RSL24D1	51187	broad.mit.edu	36	15	53262833	53262833	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Silent	SNP	53262833	53262833	RSL24D1	15	G	G	A	48
SRRM2	23524	broad.mit.edu	36	16	2753348	2753348	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Missense_Mutation	SNP	2753348	2753348	SRRM2	16	A	A	G	15
SPN	6693	broad.mit.edu	36	16	29583716	29583716	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Missense_Mutation	SNP	29583716	29583716	SPN	16	C	C	A	24
ZNF423	23090	broad.mit.edu	36	16	48380912	48380912	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Silent	SNP	48380912	48380912	ZNF423	16	G	G	A	39
TP53	7157	broad.mit.edu	36	17	7517867	7517867	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Missense_Mutation	SNP	7517867	7517867	TP53	17	C	C	T	22
CA10	56934	broad.mit.edu	36	17	47180163	47180163	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Missense_Mutation	SNP	47180163	47180163	CA10	17	C	C	T	17
NPLOC4	55666	broad.mit.edu	36	17	77190937	77190937	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Missense_Mutation	SNP	77190937	77190937	NPLOC4	17	G	G	C	37
KIAA0802	23255	broad.mit.edu	36	18	8809155	8809155	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Silent	SNP	8809155	8809155	KIAA0802	18	G	G	A	39
TRAPPC8	22878	broad.mit.edu	36	18	27673300	27673300	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Missense_Mutation	SNP	27673300	27673300	TRAPPC8	18	G	G	A	45
POLI	11201	broad.mit.edu	36	18	50063294	50063294	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Missense_Mutation	SNP	50063294	50063294	POLI	18	A	A	G	1
ATP9B	374868	broad.mit.edu	36	18	74957468	74957468	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Missense_Mutation	SNP	74957468	74957468	ATP9B	18	C	C	G	21
NDUFA7	4701	broad.mit.edu	36	19	8287481	8287482	+	Missense_Mutation	DNP	GG	GG	AA	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Missense_Mutation	DNP	8287481	8287482	NDUFA7	19	GG	GG	AA	47
MAST3	23031	broad.mit.edu	36	19	18116395	18116395	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Missense_Mutation	SNP	18116395	18116395	MAST3	19	G	G	A	34
ZNF383	163087	broad.mit.edu	36	19	42418782	42418782	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Missense_Mutation	SNP	42418782	42418782	ZNF383	19	G	G	A	47
ZNF761	388561	broad.mit.edu	36	19	58650172	58650172	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Nonsense_Mutation	SNP	58650172	58650172	ZNF761	19	C	C	A	29
ZSCAN4	201516	broad.mit.edu	36	19	62881095	62881095	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Missense_Mutation	SNP	62881095	62881095	ZSCAN4	19	T	T	G	58
GLI2	2736	broad.mit.edu	36	2	121444566	121444566	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Missense_Mutation	SNP	121444566	121444566	GLI2	2	G	G	T	42
KCTD18	130535	broad.mit.edu	36	2	201079890	201079890	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Missense_Mutation	SNP	201079890	201079890	KCTD18	2	C	C	A	27
SP100	6672	broad.mit.edu	36	2	231114284	231114284	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Missense_Mutation	SNP	231114284	231114284	SP100	2	G	G	C	44
PASK	23178	broad.mit.edu	36	2	241700379	241700379	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Missense_Mutation	SNP	241700379	241700379	PASK	2	G	G	T	36
ULK4	54986	broad.mit.edu	36	3	41721792	41721792	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Nonsense_Mutation	SNP	41721792	41721792	ULK4	3	T	T	A	61
ATP10D	57205	broad.mit.edu	36	4	47232703	47232703	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Missense_Mutation	SNP	47232703	47232703	ATP10D	4	A	A	C	2
FAT4	79633	broad.mit.edu	36	4	126461042	126461042	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Silent	SNP	126461042	126461042	FAT4	4	C	C	T	23
LRBA	987	broad.mit.edu	36	4	151577369	151577369	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Missense_Mutation	SNP	151577369	151577369	LRBA	4	T	T	G	51
IQGAP2	10788	broad.mit.edu	36	5	76032686	76032686	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Missense_Mutation	SNP	76032686	76032686	IQGAP2	5	G	G	C	41
CAST	831	broad.mit.edu	36	5	96104194	96104194	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Missense_Mutation	SNP	96104194	96104194	CAST	5	G	G	A	38
FBN2	2201	broad.mit.edu	36	5	127738240	127738240	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Missense_Mutation	SNP	127738240	127738240	FBN2	5	A	A	T	8
GPRIN1	114787	broad.mit.edu	36	5	175957797	175957797	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Missense_Mutation	SNP	175957797	175957797	GPRIN1	5	C	C	A	22
BAT1	7919	broad.mit.edu	36	6	31606559	31606559	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Missense_Mutation	SNP	31606559	31606559	BAT1	6	C	C	G	29
GPR110	266977	broad.mit.edu	36	6	47092432	47092432	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Missense_Mutation	SNP	47092432	47092432	GPR110	6	C	C	G	17
UTRN	7402	broad.mit.edu	36	6	144825491	144825491	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Missense_Mutation	SNP	144825491	144825491	UTRN	6	T	T	G	51
MEOX2	4223	broad.mit.edu	36	7	15692124	15692124	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Silent	SNP	15692124	15692124	MEOX2	7	C	C	A	19
CCDC126	90693	broad.mit.edu	36	7	23649244	23649244	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Silent	SNP	23649244	23649244	CCDC126	7	G	G	A	39
HOXA10	3206	broad.mit.edu	36	7	27180331	27180331	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Silent	SNP	27180331	27180331	HOXA10	7	G	G	A	38
MUC17	140453	broad.mit.edu	36	7	100465211	100465211	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Missense_Mutation	SNP	100465211	100465211	MUC17	7	G	G	T	44
PRKDC	5591	broad.mit.edu	36	8	48973650	48973650	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Missense_Mutation	SNP	48973650	48973650	PRKDC	8	G	G	C	45
TM7SF4	81501	broad.mit.edu	36	8	105430027	105430027	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Missense_Mutation	SNP	105430027	105430027	TM7SF4	8	C	C	T	22
TPM2	7169	broad.mit.edu	36	9	35679193	35679193	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Missense_Mutation	SNP	35679193	35679193	TPM2	9	C	C	G	19
SPTAN1	6709	broad.mit.edu	36	9	130400554	130400554	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Missense_Mutation	SNP	130400554	130400554	SPTAN1	9	C	C	G	24
CCBL1	883	broad.mit.edu	36	9	130639832	130639832	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2102-01	Broad	Missense_Mutation	SNP	130639832	130639832	CCBL1	9	G	G	A	40
PPL	5493	broad.mit.edu	36	16	4875454	4875459	+	In_Frame_Del	DEL	GCCTCC	-	-	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-61-2102-01	Broad	In_Frame_Del	DEL	4875454	4875459	PPL	16	GCCTCC	-	-	46
C16orf70	80262	broad.mit.edu	36	16	65717447	65717448	+	Splice_Site_Ins	INS	-	T	-	novel	Unknown	TCGA-61-2102-01	TCGA-61-2102-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-61-2102-01	Broad	Splice_Site_Ins	INS	65717447	65717448	C16orf70	16	-	T	-	44
