Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
SVIL	6840	broad.mit.edu	37	10	29754571	29754571	+	Missense_Mutation	SNP	C	A	A			TCGA-CE-A13K-01A-11D-A10S-08	TCGA-CE-A13K-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	ee4e7eca-ee5d-4f91-a4fd-9abbb2cf7b14	b4558539-6baf-4d9d-a6a8-3b5f4d803141	g.chr10:29754571C>A	uc001iut.1	-	34	6839	c.6086G>T	c.(6085-6087)AGT>ATT	p.S2029I	LOC387647_uc001iuo.1_Intron|LOC387647_uc001iup.2_Intron|LOC387647_uc001iuq.1_Intron|SVIL_uc010qdw.1_Missense_Mutation_p.S943I|SVIL_uc001iuu.1_Missense_Mutation_p.S1603I	NM_021738	NP_068506	O95425	SVIL_HUMAN	supervillin isoform 2	2029	Gelsolin-like 5.				cytoskeleton organization|skeletal muscle tissue development	cell junction|costamere|invadopodium|nucleus|podosome	actin filament binding			ovary(5)|upper_aerodigestive_tract(1)	6		Breast(68;0.103)				GGGCATGGAACTGACCACAGA	0.587000													20	61	---	---	---	---	4.35082e-09	4.89467e-09	0.055883	1	0
LOC642826	642826	broad.mit.edu	37	10	47207813	47207813	+	RNA	SNP	T	C	C			TCGA-CE-A13K-01A-11D-A10S-08	TCGA-CE-A13K-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	ee4e7eca-ee5d-4f91-a4fd-9abbb2cf7b14	b4558539-6baf-4d9d-a6a8-3b5f4d803141	g.chr10:47207813T>C	uc001jei.2	-	12		c.1586A>G			uc009xnf.2_Missense_Mutation_p.H132R					Homo sapiens cDNA, FLJ99065.												0						TTTACTTACATGGTTTGTACA	0.294000													4	29	---	---	---	---	0	0	0.009096	0	0
RSF1	51773	broad.mit.edu	37	11	77404636	77404636	+	Silent	SNP	G	A	A			TCGA-CE-A13K-01A-11D-A10S-08	TCGA-CE-A13K-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	ee4e7eca-ee5d-4f91-a4fd-9abbb2cf7b14	b4558539-6baf-4d9d-a6a8-3b5f4d803141	g.chr11:77404636G>A	uc001oyn.2	-	8	2856	c.2736C>T	c.(2734-2736)TGC>TGT	p.C912C	RSF1_uc001oym.2_Silent_p.C660C	NM_016578	NP_057662	Q96T23	RSF1_HUMAN	remodeling and spacing factor 1	912	PHD-type.				CenH3-containing nucleosome assembly at centromere|negative regulation of DNA binding|negative regulation of transcription, DNA-dependent|nucleosome positioning|positive regulation of transcription, DNA-dependent|positive regulation of viral transcription|transcription initiation, DNA-dependent	RSF complex	histone binding|protein binding|zinc ion binding			ovary(2)|central_nervous_system(2)	4	all_cancers(14;1.54e-17)|all_epithelial(13;4.06e-20)|Ovarian(111;0.152)		Epithelial(5;3e-50)|all cancers(3;6.37e-47)|BRCA - Breast invasive adenocarcinoma(5;9.82e-31)			ATCCACTATCGCAAGAGTCAC	0.453000													3	16	---	---	---	---	0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	12	92018	92018	+	Missense_Mutation	SNP	T	C	C			TCGA-CE-A13K-01A-11D-A10S-08	TCGA-CE-A13K-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	ee4e7eca-ee5d-4f91-a4fd-9abbb2cf7b14	b4558539-6baf-4d9d-a6a8-3b5f4d803141	g.chr12:92018T>C	uc010sdi.1	-	2	320	c.292A>G	c.(292-294)AGT>GGT	p.S98G	uc010sdj.1_RNA					SubName: Full=DEAD/H box polypeptide 11 like 11;																		GACTCCACACTCTCCTGGGTT	0.592000													4	7	---	---	---	---	0	0	0.009096	0	0
ACSM2B	348158	broad.mit.edu	37	16	20565148	20565148	+	Missense_Mutation	SNP	C	T	T			TCGA-CE-A13K-01A-11D-A10S-08	TCGA-CE-A13K-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	ee4e7eca-ee5d-4f91-a4fd-9abbb2cf7b14	b4558539-6baf-4d9d-a6a8-3b5f4d803141	g.chr16:20565148C>T	uc002dhj.3	-	6	901	c.691G>A	c.(691-693)GCA>ACA	p.A231T	ACSM2B_uc002dhk.3_Missense_Mutation_p.A231T|ACSM2B_uc010bwf.1_Missense_Mutation_p.A231T	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	231					fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						GAATGTTCTGCCATCTTGGGA	0.522000													6	133	---	---	---	---	0	0	0.021553	0	0
KANK3	256949	broad.mit.edu	37	19	8389408	8389408	+	Silent	SNP	G	A	A			TCGA-CE-A13K-01A-11D-A10S-08	TCGA-CE-A13K-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	ee4e7eca-ee5d-4f91-a4fd-9abbb2cf7b14	b4558539-6baf-4d9d-a6a8-3b5f4d803141	g.chr19:8389408G>A	uc010dwa.2	-	10	2373	c.2307C>T	c.(2305-2307)ATC>ATT	p.I769I		NM_198471	NP_940873	Q6NY19	KANK3_HUMAN	ankyrin repeat domain 47	769	ANK 5.										0						CCTCCAGGGCGATGGCCAGGG	0.637000													3	41	---	---	---	---	0	0	0.004672	0	0
RGPD5	84220	broad.mit.edu	37	2	113127775	113127775	+	Missense_Mutation	SNP	G	C	C			TCGA-CE-A13K-01A-11D-A10S-08	TCGA-CE-A13K-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	ee4e7eca-ee5d-4f91-a4fd-9abbb2cf7b14	b4558539-6baf-4d9d-a6a8-3b5f4d803141	g.chr2:113127775G>C	uc002ths.1	-	23	5355	c.5278C>G	c.(5278-5280)CCT>GCT	p.P1760A	RGPD8_uc010fkk.1_Missense_Mutation_p.P1620A	NM_005054	NP_005045	Q99666	RGPD5_HUMAN	RANBP2-like and GRIP domain containing 5 isoform	1760					intracellular transport	cytoplasm	binding				0						GAACGGGAAGGATTTTCTTCC	0.308000													5	81	---	---	---	---	0	0	0.014758	0	0
FRG1B	284802	broad.mit.edu	37	20	29628283	29628283	+	Silent	SNP	G	C	C			TCGA-CE-A13K-01A-11D-A10S-08	TCGA-CE-A13K-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	ee4e7eca-ee5d-4f91-a4fd-9abbb2cf7b14	b4558539-6baf-4d9d-a6a8-3b5f4d803141	g.chr20:29628283G>C	uc010ztl.1	+	3	227	c.195G>C	c.(193-195)GGG>GGC	p.G65G	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Silent_p.G17G					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						ATGAAGCAGGGGACATAGAAG	0.378000													5	111	---	---	---	---	0	0	0.021553	0	0
PAPSS1	9061	broad.mit.edu	37	4	108566109	108566109	+	Missense_Mutation	SNP	T	A	A			TCGA-CE-A13K-01A-11D-A10S-08	TCGA-CE-A13K-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	ee4e7eca-ee5d-4f91-a4fd-9abbb2cf7b14	b4558539-6baf-4d9d-a6a8-3b5f4d803141	g.chr4:108566109T>A	uc003hyk.2	-	10	1439	c.1355A>T	c.(1354-1356)CAC>CTC	p.H452L		NM_005443	NP_005434	O43252	PAPS1_HUMAN	3'-phosphoadenosine 5'-phosphosulfate synthase	452	Adenylyl-sulfate kinase.				3'-phosphoadenosine 5'-phosphosulfate biosynthetic process|skeletal system development|sulfate assimilation|xenobiotic metabolic process	cytosol	adenylylsulfate kinase activity|ATP binding|sulfate adenylyltransferase (ATP) activity			ovary(1)	1		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;5.49e-05)		ACCCAGAGGGTGGAGGAGGAG	0.542000													12	109	---	---	---	---	0	0	0.093190	0	0
TRIML1	339976	broad.mit.edu	37	4	189068316	189068316	+	Silent	SNP	C	T	T			TCGA-CE-A13K-01A-11D-A10S-08	TCGA-CE-A13K-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	ee4e7eca-ee5d-4f91-a4fd-9abbb2cf7b14	b4558539-6baf-4d9d-a6a8-3b5f4d803141	g.chr4:189068316C>T	uc003izm.1	+	6	1312	c.1197C>T	c.(1195-1197)CAC>CAT	p.H399H	TRIML1_uc003izn.1_Silent_p.H123H	NM_178556	NP_848651	Q8N9V2	TRIML_HUMAN	tripartite motif family-like 1	399	B30.2/SPRY.				multicellular organismal development		ligase activity|zinc ion binding			ovary(1)|pancreas(1)|breast(1)|skin(1)	4		all_cancers(14;1.33e-43)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)|all_hematologic(60;0.062)		OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|BRCA - Breast invasive adenocarcinoma(30;4.19e-06)|GBM - Glioblastoma multiforme(59;0.000232)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.156)		AAGGTCAGCACGTCAGAGAGC	0.488000													81	109	---	---	---	---	0	0	0.048971	0	0
PCDHGA3	56112	broad.mit.edu	37	5	140724389	140724389	+	Silent	SNP	G	A	A			TCGA-CE-A13K-01A-11D-A10S-08	TCGA-CE-A13K-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	ee4e7eca-ee5d-4f91-a4fd-9abbb2cf7b14	b4558539-6baf-4d9d-a6a8-3b5f4d803141	g.chr5:140724389G>A	uc003ljm.1	+	1	789	c.789G>A	c.(787-789)ACG>ACA	p.T263T	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc010jfx.1_Silent_p.T23T|PCDHGA3_uc011dap.1_Silent_p.T263T	NM_018916	NP_061739	Q9Y5H0	PCDG3_HUMAN	protocadherin gamma subfamily A, 3 isoform 1	263	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGCTGCTCACGGTGAATGCCA	0.478000													35	52	---	---	---	---	0	0	0.064281	0	0
HLA-J	3137	broad.mit.edu	37	6	29977359	29977359	+	Missense_Mutation	SNP	G	A	A	rs146982767	by1000genomes	TCGA-CE-A13K-01A-11D-A10S-08	TCGA-CE-A13K-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	ee4e7eca-ee5d-4f91-a4fd-9abbb2cf7b14	b4558539-6baf-4d9d-a6a8-3b5f4d803141	g.chr6:29977359G>A	uc003rtl.3	+	5	740	c.378G>A	c.(376-378)ATG>ATA	p.M126I	HLA-G_uc011dmb.1_3'UTR|NCRNA00171_uc011dme.1_Intron|HLA-J_uc003nou.3_RNA|HLA-J_uc003nov.3_RNA					Homo sapiens major histocompatibility complex, class I, J (pseudogene), mRNA (cDNA clone IMAGE:4694038).												0						ATTTGTTCATGCCTTCCCTTT	0.453000													5	64	---	---	---	---	0	0	0.029380	0	0
BAT2	7916	broad.mit.edu	37	6	31595798	31595798	+	Missense_Mutation	SNP	C	G	G			TCGA-CE-A13K-01A-11D-A10S-08	TCGA-CE-A13K-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	ee4e7eca-ee5d-4f91-a4fd-9abbb2cf7b14	b4558539-6baf-4d9d-a6a8-3b5f4d803141	g.chr6:31595798C>G	uc003nvb.3	+	12	1796	c.1547C>G	c.(1546-1548)TCT>TGT	p.S516C	BAT2_uc011dnv.1_RNA|BAT2_uc003nvc.3_Missense_Mutation_p.S516C	NM_080686	NP_542417	P48634	PRC2A_HUMAN	HLA-B associated transcript-2	516	4 X 57 AA type A repeats.|2 X type B repeats.|2-2.					cytoplasm|nucleus	protein binding				0						GCTGCCCCTTCTACCCCAGCT	0.602000													82	186	---	---	---	---	0	0	0.048971	0	0
EHMT2	10919	broad.mit.edu	37	6	31847931	31847931	+	Missense_Mutation	SNP	C	A	A			TCGA-CE-A13K-01A-11D-A10S-08	TCGA-CE-A13K-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	ee4e7eca-ee5d-4f91-a4fd-9abbb2cf7b14	b4558539-6baf-4d9d-a6a8-3b5f4d803141	g.chr6:31847931C>A	uc003nxz.1	-	28	3573	c.3563G>T	c.(3562-3564)CGT>CTT	p.R1188L	EHMT2_uc003nxv.1_Missense_Mutation_p.R227L|EHMT2_uc003nxw.1_Missense_Mutation_p.R227L|EHMT2_uc003nxx.1_Missense_Mutation_p.R386L|EHMT2_uc003nxy.1_Missense_Mutation_p.R986L|EHMT2_uc011don.1_Missense_Mutation_p.R1211L|EHMT2_uc003nya.1_Missense_Mutation_p.R1154L|SLC44A4_uc010jti.2_5'Flank|SLC44A4_uc011dol.1_5'Flank|SLC44A4_uc011dom.1_5'Flank	NM_006709	NP_006700	Q96KQ7	EHMT2_HUMAN	euchromatic histone-lysine N-methyltransferase 2	1188					DNA methylation|peptidyl-lysine dimethylation	chromosome|nucleus	histone methyltransferase activity (H3-K27 specific)|histone methyltransferase activity (H3-K9 specific)|p53 binding|zinc ion binding			ovary(1)	1						GCGGGCCAGACGGCTCTGCTC	0.612000													3	45	---	---	---	---	0.004672	0.00504576	0.004672	1	0
SLC29A1	2030	broad.mit.edu	37	6	44197517	44197517	+	Silent	SNP	C	T	T			TCGA-CE-A13K-01A-11D-A10S-08	TCGA-CE-A13K-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	ee4e7eca-ee5d-4f91-a4fd-9abbb2cf7b14	b4558539-6baf-4d9d-a6a8-3b5f4d803141	g.chr6:44197517C>T	uc003owu.1	+	4	632	c.303C>T	c.(301-303)TTC>TTT	p.F101F	SLC29A1_uc011dvp.1_Silent_p.F120F|SLC29A1_uc003owv.1_Silent_p.F101F|SLC29A1_uc003oww.1_Silent_p.F180F|SLC29A1_uc011dvq.1_Silent_p.F143F|SLC29A1_uc003owx.1_Silent_p.F101F|SLC29A1_uc003owy.1_Silent_p.F101F|SLC29A1_uc003owz.1_Silent_p.F101F	NM_004955	NP_004946	Q99808	S29A1_HUMAN	equilibrative nucleoside transporter 1	101	Helical; (Potential).				nucleobase, nucleoside and nucleotide metabolic process	apical plasma membrane|basolateral plasma membrane|integral to plasma membrane|membrane fraction	nucleoside transmembrane transporter activity|protein binding			large_intestine(2)|skin(1)	3	all_cancers(18;3.19e-06)|Lung NSC(15;0.00108)|all_lung(25;0.00278)|Hepatocellular(11;0.00908)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)		Troglitazone(DB00197)	TCAACTCCTTCCTGCATCAGA	0.592000													4	90	---	---	---	---	0	0	0.009096	0	0
MDN1	23195	broad.mit.edu	37	6	90365677	90365677	+	Missense_Mutation	SNP	C	T	T			TCGA-CE-A13K-01A-11D-A10S-08	TCGA-CE-A13K-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	ee4e7eca-ee5d-4f91-a4fd-9abbb2cf7b14	b4558539-6baf-4d9d-a6a8-3b5f4d803141	g.chr6:90365677C>T	uc003pnn.1	-	92	15412	c.15296G>A	c.(15295-15297)AGG>AAG	p.R5099K		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	5099					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		CCCAGGTTTCCTCTTAAAACT	0.308000													8	66	---	---	---	---	0	0	0.038147	0	0
TFPI2	7980	broad.mit.edu	37	7	93519448	93519448	+	Splice_Site	SNP	C	A	A			TCGA-CE-A13K-01A-11D-A10S-08	TCGA-CE-A13K-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	ee4e7eca-ee5d-4f91-a4fd-9abbb2cf7b14	b4558539-6baf-4d9d-a6a8-3b5f4d803141	g.chr7:93519448C>A	uc003umy.1	-	2	346	c.271_splice	c.e2+1	p.K91_splice	GNGT1_uc003umx.1_Intron|TFPI2_uc003umz.1_Splice_Site_p.K91_splice|TFPI2_uc003una.1_Splice_Site_p.K80_splice|TFPI2_uc003unb.1_Splice_Site_p.K91_splice|TFPI2_uc010lfg.1_Intron	NM_006528	NP_006519	P48307	TFPI2_HUMAN	tissue factor pathway inhibitor 2 precursor						blood coagulation	proteinaceous extracellular matrix	extracellular matrix structural constituent|serine-type endopeptidase inhibitor activity			pancreas(1)	1	all_cancers(62;4.45e-10)|all_epithelial(64;2.92e-09)|Lung NSC(181;0.218)		STAD - Stomach adenocarcinoma(171;0.000967)			AGGGCACTTACTTTCTATCCT	0.602000													23	32	---	---	---	---	1.10513e-12	1.29733e-12	0.069288	1	0
MTERFD1	51001	broad.mit.edu	37	8	97251725	97251725	+	Silent	SNP	C	T	T			TCGA-CE-A13K-01A-11D-A10S-08	TCGA-CE-A13K-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	ee4e7eca-ee5d-4f91-a4fd-9abbb2cf7b14	b4558539-6baf-4d9d-a6a8-3b5f4d803141	g.chr8:97251725C>T	uc003yhs.1	-	8	1326	c.1248G>A	c.(1246-1248)ACG>ACA	p.T416T	MTERFD1_uc003yhr.1_Silent_p.T295T|MTERFD1_uc010mbd.1_3'UTR	NM_015942	NP_057026	Q96E29	MTER1_HUMAN	MTERF domain containing 1 precursor	416					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion	transcription regulatory region DNA binding			ovary(1)	1	Breast(36;5.16e-05)					AAATCTAAAGCGTTTTTAAGA	0.274000													12	19	---	---	---	---	0	0	0.080935	0	0
HIST3H2A	92815	broad.mit.edu	37	1	228646357	228646358	+	5'Flank	DEL	GT	-	-			TCGA-CE-A13K-01A-11D-A10S-08	TCGA-CE-A13K-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	ee4e7eca-ee5d-4f91-a4fd-9abbb2cf7b14	b4558539-6baf-4d9d-a6a8-3b5f4d803141	g.chr1:228646357_228646358delGT	uc001hsy.2	-							NM_033445	NP_254280	Q7L7L0	H2A3_HUMAN	histone cluster 3, H2a						nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)	1		Prostate(94;0.183)				AATCTGAGCCgtgtgtgtgtgt	0.475													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42394244	42394244	+	IGR	DEL	T	-	-			TCGA-CE-A13K-01A-11D-A10S-08	TCGA-CE-A13K-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	ee4e7eca-ee5d-4f91-a4fd-9abbb2cf7b14	b4558539-6baf-4d9d-a6a8-3b5f4d803141	g.chr10:42394244delT								None (None upstream) : LOC441666 (433071 downstream)																							aatcattgaatggaattgaat	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	24737258	24737263	+	5'Flank	DEL	CCCCCA	-	-			TCGA-CE-A13K-01A-11D-A10S-08	TCGA-CE-A13K-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	ee4e7eca-ee5d-4f91-a4fd-9abbb2cf7b14	b4558539-6baf-4d9d-a6a8-3b5f4d803141	g.chr12:24737258_24737263delCCCCCA	uc001rgb.1	-											Homo sapiens cDNA FLJ32894 fis, clone TESTI2004994.																		CTTCGATTAGcccccacccccacccc	0.432													7	6	---	---	---	---					
ZNF219	51222	broad.mit.edu	37	14	21560753	21560758	+	In_Frame_Del	DEL	GAGGCT	-	-	rs3841049		TCGA-CE-A13K-01A-11D-A10S-08	TCGA-CE-A13K-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	ee4e7eca-ee5d-4f91-a4fd-9abbb2cf7b14	b4558539-6baf-4d9d-a6a8-3b5f4d803141	g.chr14:21560753_21560758delGAGGCT	uc001vzr.2	-	3	1119_1124	c.698_703delAGCCTC	c.(697-705)CAGCCTCCA>CCA	p.QP233del	ZNF219_uc001vzs.2_In_Frame_Del_p.QP233del|ZNF219_uc010aik.1_In_Frame_Del_p.QP233del	NM_016423	NP_057507	Q9P2Y4	ZN219_HUMAN	zinc finger protein 219	233_234					negative regulation of transcription, DNA-dependent	integral to membrane|nucleus	DNA binding|histamine receptor activity|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(1)	1	all_cancers(95;0.00185)		OV - Ovarian serous cystadenocarcinoma(11;9.86e-11)|Epithelial(56;1.27e-08)|all cancers(55;6.06e-08)	GBM - Glioblastoma multiforme(265;0.0191)		ggctggggtggaggctgaggctgagg	0.335											OREG0022565	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	80035882	80035882	+	IGR	DEL	A	-	-			TCGA-CE-A13K-01A-11D-A10S-08	TCGA-CE-A13K-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	ee4e7eca-ee5d-4f91-a4fd-9abbb2cf7b14	b4558539-6baf-4d9d-a6a8-3b5f4d803141	g.chr15:80035882delA								KIAA1024 (271240 upstream) : MTHFS (101438 downstream)																							ATTTTACATTAAAAAAAATTG	0.428													4	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	20451560	20451561	+	5'Flank	INS	-	T	T			TCGA-CE-A13K-01A-11D-A10S-08	TCGA-CE-A13K-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	ee4e7eca-ee5d-4f91-a4fd-9abbb2cf7b14	b4558539-6baf-4d9d-a6a8-3b5f4d803141	g.chr17:20451560_20451561insT	uc002gxm.1	-						uc010vzt.1_5'Flank|uc010vzu.1_5'Flank|uc010vzv.1_5'Flank|uc010vzw.1_5'Flank|uc002gxw.2_5'Flank					DQ571391																		TTTCCTGAATGTTCAGGAGGAC	0.515													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	18	57429205	57429205	+	IGR	DEL	A	-	-			TCGA-CE-A13K-01A-11D-A10S-08	TCGA-CE-A13K-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	ee4e7eca-ee5d-4f91-a4fd-9abbb2cf7b14	b4558539-6baf-4d9d-a6a8-3b5f4d803141	g.chr18:57429205delA								CCBE1 (64561 upstream) : PMAIP1 (137987 downstream)																							AATTGTACTTAAAAAAAAAAA	0.274													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	18	71053406	71053407	+	IGR	DEL	AA	-	-	rs56195145		TCGA-CE-A13K-01A-11D-A10S-08	TCGA-CE-A13K-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	ee4e7eca-ee5d-4f91-a4fd-9abbb2cf7b14	b4558539-6baf-4d9d-a6a8-3b5f4d803141	g.chr18:71053406_71053407delAA								NETO1 (518596 upstream) : FBXO15 (687181 downstream)																							agaaagaaagaaagaaagaaag	0.059													2	4	---	---	---	---					
PCSK4	54760	broad.mit.edu	37	19	1482365	1482366	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-CE-A13K-01A-11D-A10S-08	TCGA-CE-A13K-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	ee4e7eca-ee5d-4f91-a4fd-9abbb2cf7b14	b4558539-6baf-4d9d-a6a8-3b5f4d803141	g.chr19:1482365_1482366delCT	uc002ltb.1	-	14	1867_1868	c.1805_1806delAG	c.(1804-1806)GAGfs	p.E602fs	PCSK4_uc002lsz.2_Frame_Shift_Del_p.E89fs|PCSK4_uc002lta.2_Frame_Shift_Del_p.R372fs	NM_017573	NP_060043	Q6UW60	PCSK4_HUMAN	proprotein convertase subtilisin/kexin type 4	602					proteolysis	integral to membrane	serine-type endopeptidase activity				0		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGCACAGCCCCTCTGTGTCCCG	0.728													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	16055958	16055959	+	IGR	INS	-	AAGG	AAGG	rs146806868	by1000genomes	TCGA-CE-A13K-01A-11D-A10S-08	TCGA-CE-A13K-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	ee4e7eca-ee5d-4f91-a4fd-9abbb2cf7b14	b4558539-6baf-4d9d-a6a8-3b5f4d803141	g.chr21:16055958_16055959insAAGG								SAMSN1 (100235 upstream) : NRIP1 (277597 downstream)																							aggaaagaagaaaggaagaaag	0.079													5	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	44755961	44755961	+	IGR	DEL	C	-	-			TCGA-CE-A13K-01A-11D-A10S-08	TCGA-CE-A13K-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	ee4e7eca-ee5d-4f91-a4fd-9abbb2cf7b14	b4558539-6baf-4d9d-a6a8-3b5f4d803141	g.chr21:44755961delC								CRYAA (163048 upstream) : SIK1 (78437 downstream)																							accatcaccaccatcaccacc	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	18796638	18796639	+	IGR	INS	-	T	T	rs67999971		TCGA-CE-A13K-01A-11D-A10S-08	TCGA-CE-A13K-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	ee4e7eca-ee5d-4f91-a4fd-9abbb2cf7b14	b4558539-6baf-4d9d-a6a8-3b5f4d803141	g.chr6:18796638_18796639insT								MIR548A1 (224527 upstream) : None (None downstream)																							ttccttctttctttctttcttt	0.000													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	155948833	155948844	+	IGR	DEL	GAAGGAAGGAAA	-	-			TCGA-CE-A13K-01A-11D-A10S-08	TCGA-CE-A13K-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	ee4e7eca-ee5d-4f91-a4fd-9abbb2cf7b14	b4558539-6baf-4d9d-a6a8-3b5f4d803141	g.chr6:155948833_155948844delGAAGGAAGGAAA								NOX3 (171796 upstream) : MIR1202 (319087 downstream)																							aggaaagaaggaaggaaggaaagaaggaagga	0.000													4	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	34923047	34923047	+	IGR	DEL	T	-	-			TCGA-CE-A13K-01A-11D-A10S-08	TCGA-CE-A13K-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	ee4e7eca-ee5d-4f91-a4fd-9abbb2cf7b14	b4558539-6baf-4d9d-a6a8-3b5f4d803141	g.chr9:34923047delT								C9orf144 (84464 upstream) : KIAA1045 (34474 downstream)																							TTTGTTTTTGTTTTTTttttt	0.308													3	4	---	---	---	---					
