Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CLCN6	1185	broad.mit.edu	37	1	11888618	11888618	+	Missense_Mutation	SNP	G	C	C			TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chr1:11888618G>C	uc001ate.3	+	12	1171	c.1058G>C	c.(1057-1059)TGT>TCT	p.C353S	CLCN6_uc009vnh.1_Intron|CLCN6_uc010oat.1_Missense_Mutation_p.C69S|CLCN6_uc010oau.1_Missense_Mutation_p.C331S	NM_001286	NP_001277	P51797	CLCN6_HUMAN	chloride channel 6 isoform ClC-6a	353	Helical; (By similarity).				cell volume homeostasis|signal transduction	endosome membrane|integral to membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity				0	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.13e-06)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.000816)|KIRC - Kidney renal clear cell carcinoma(229;0.00268)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		ACATTCAACTGTCTGAACAAG	0.537000													4	399	---	---	---	---	0	0	0.014758	0	0
PPOX	5498	broad.mit.edu	37	1	161140206	161140206	+	Missense_Mutation	SNP	G	C	C			TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chr1:161140206G>C	uc001fyj.2	+	10	1285	c.995G>C	c.(994-996)GGA>GCA	p.G332A	PPOX_uc001fyn.2_Intron|PPOX_uc001fyg.2_Missense_Mutation_p.G332A|PPOX_uc001fyl.2_Missense_Mutation_p.G298A|PPOX_uc001fym.2_RNA|PPOX_uc001fyk.2_Missense_Mutation_p.G170A|PPOX_uc001fyh.2_Missense_Mutation_p.G170A|PPOX_uc010pkg.1_Missense_Mutation_p.G170A|PPOX_uc009wuc.1_Intron|PPOX_uc010pkh.1_Missense_Mutation_p.G77A|PPOX_uc001fyi.2_Missense_Mutation_p.G170A	NM_001122764	NP_001116236	P50336	PPOX_HUMAN	protoporphyrinogen oxidase	332					heme biosynthetic process	intrinsic to mitochondrial inner membrane|mitochondrial intermembrane space	flavin adenine dinucleotide binding|oxygen-dependent protoporphyrinogen oxidase activity			ovary(1)	1	all_cancers(52;3.73e-19)|Breast(13;0.000577)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			CAGGGATTTGGACATTTGGTG	0.537000									Porphyria_Variegata				3	104	---	---	---	---	0	0	0.115264	0	0
AGAP11	119385	broad.mit.edu	37	10	88768854	88768854	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chr10:88768854G>A	uc001kee.2	+	12	2049	c.845G>A	c.(844-846)GGC>GAC	p.G282D	AGAP11_uc001kef.2_Intron	NM_133447	NP_597704	Q8TF27	AGA11_HUMAN	ankyrin repeat and GTPase domain Arf GTPase	282	PH.				regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						TCCGTCACTGGCCAAACGTGC	0.507000													4	284	---	---	---	---	0	0	0.150653	0	0
CD44	960	broad.mit.edu	37	11	35232956	35232956	+	Silent	SNP	T	C	C			TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chr11:35232956T>C	uc001mvu.2	+	14	2204	c.1770T>C	c.(1768-1770)ACT>ACC	p.T590T	CD44_uc001mvv.2_Silent_p.T547T|CD44_uc001mvw.2_Silent_p.T341T|CD44_uc001mvx.2_Intron|CD44_uc001mvy.2_Intron|CD44_uc001mwc.3_Silent_p.T277T|CD44_uc010rer.1_Intron|CD44_uc009ykh.2_Intron|CD44_uc010res.1_Silent_p.T154T|CD44_uc010ret.1_RNA|CD44_uc010reu.1_Silent_p.T118T	NM_000610	NP_000601	P16070	CD44_HUMAN	CD44 antigen isoform 1 precursor	590	Extracellular (Potential).|Stem.				cell-cell adhesion|cell-matrix adhesion|interferon-gamma-mediated signaling pathway|negative regulation of apoptosis|negative regulation of DNA damage response, signal transduction by p53 class mediator|positive regulation of ERK1 and ERK2 cascade|positive regulation of peptidyl-serine phosphorylation|positive regulation of peptidyl-tyrosine phosphorylation	cell surface|Golgi apparatus|integral to plasma membrane	collagen binding|hyaluronic acid binding|receptor activity			pancreas(1)	1	all_cancers(35;0.212)|all_lung(20;0.0874)|all_epithelial(35;0.112)	all_hematologic(20;0.107)	STAD - Stomach adenocarcinoma(6;0.00731)		Hyaluronidase(DB00070)	CTGCAGTTACTGTTGGAGATT	0.398000													8	262	---	---	---	---	0	0	0.038147	0	0
MLL	4297	broad.mit.edu	37	11	118374769	118374769	+	Missense_Mutation	SNP	A	T	T			TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chr11:118374769A>T	uc001pta.2	+	27	8176	c.8153A>T	c.(8152-8154)GAT>GTT	p.D2718V	MLL_uc001ptb.2_Missense_Mutation_p.D2721V	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	2718		Cleavage; by TASP1, site 2.		DGV->AAA: Abolishes cleavage by TASP1; when associated with 2666-A-A-2667.	apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		TCACAGTTGGATGGTGTTGAT	0.428000			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								5	64	---	---	---	---	0	0	0.021553	0	0
HOXC12	3228	broad.mit.edu	37	12	54348806	54348806	+	Silent	SNP	G	T	T			TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chr12:54348806G>T	uc010soq.1	+	1	93	c.93G>T	c.(91-93)GCG>GCT	p.A31A		NM_173860	NP_776272	P31275	HXC12_HUMAN	homeobox C12	31					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			upper_aerodigestive_tract(1)	1						ACTTCCGCGCGTCCGGGGCGC	0.652000													6	45	---	---	---	---	5.18039e-06	5.50417e-06	0.038147	1	0
ZFYVE26	23503	broad.mit.edu	37	14	68248225	68248225	+	Missense_Mutation	SNP	A	G	G			TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chr14:68248225A>G	uc001xka.2	-	22	4533	c.4394T>C	c.(4393-4395)CTG>CCG	p.L1465P	ZFYVE26_uc010tsz.1_RNA|ZFYVE26_uc001xkc.3_Missense_Mutation_p.L1465P	NM_015346	NP_056161	Q68DK2	ZFY26_HUMAN	zinc finger, FYVE domain containing 26	1465					cell cycle|cell death|cytokinesis|double-strand break repair via homologous recombination	centrosome|midbody	metal ion binding|phosphatidylinositol-3-phosphate binding|protein binding			ovary(9)|breast(2)	11				all cancers(60;0.000763)|OV - Ovarian serous cystadenocarcinoma(108;0.0011)|BRCA - Breast invasive adenocarcinoma(234;0.0115)		CACGGGAAACAGGTATTGCCA	0.498000													3	157	---	---	---	---	0	0	0.115264	0	0
NEO1	4756	broad.mit.edu	37	15	73528814	73528814	+	Missense_Mutation	SNP	A	G	G			TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chr15:73528814A>G	uc002avm.3	+	8	1560	c.1418A>G	c.(1417-1419)TAC>TGC	p.Y473C	NEO1_uc010ukx.1_Missense_Mutation_p.Y473C|NEO1_uc010uky.1_Missense_Mutation_p.Y473C|NEO1_uc010ukz.1_5'UTR|NEO1_uc002avn.3_Missense_Mutation_p.Y138C	NM_002499	NP_002490	Q92859	NEO1_HUMAN	neogenin homolog 1 precursor	473	Extracellular (Potential).|Fibronectin type-III 1.				axon guidance|cell adhesion|positive regulation of muscle cell differentiation	Golgi apparatus|integral to plasma membrane|nucleus				pancreas(1)	1						AACCTTACCTACTCTGTGTTC	0.562000													4	239	---	---	---	---	0	0	0.021553	0	0
LOC645752	645752	broad.mit.edu	37	15	78208916	78208916	+	Missense_Mutation	SNP	C	G	G	rs56290535	by1000genomes	TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chr15:78208916C>G	uc010bky.2	-	14	1581	c.817G>C	c.(817-819)GAA>CAA	p.E273Q	LOC645752_uc010umq.1_5'Flank|uc002bcw.1_5'Flank|uc002bcx.1_5'Flank	NR_027024				SubName: Full=GOLGA6 protein; Flags: Fragment;												0						TCCAGATGTTCTCCTCCATCT	0.627000													3	131	---	---	---	---	0	0	0.150653	0	0
FAM64A	54478	broad.mit.edu	37	17	6348539	6348539	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chr17:6348539G>A	uc002gcw.1	+	2	158	c.109G>A	c.(109-111)GAG>AAG	p.E37K	FAM64A_uc002gct.1_Missense_Mutation_p.E37K|FAM64A_uc002gcu.1_Missense_Mutation_p.E37K|FAM64A_uc002gcv.1_Missense_Mutation_p.E37K|FAM64A_uc002gcx.1_Missense_Mutation_p.E37K|FAM64A_uc002gcy.1_RNA|FAM64A_uc002gcz.1_RNA|FAM64A_uc002gda.1_Missense_Mutation_p.E37K|FAM64A_uc002gdb.1_Missense_Mutation_p.E37K	NM_019013	NP_061886	Q9BSJ6	FA64A_HUMAN	family with sequence similarity 64, member A	37						nucleolus	protein binding				0				COAD - Colon adenocarcinoma(228;0.141)		CAGCCATCAGGAGACCTCTGT	0.647000													22	32	---	---	---	---	0	0	0.069288	0	0
GPATCH1	55094	broad.mit.edu	37	19	33592467	33592467	+	Missense_Mutation	SNP	T	C	C			TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chr19:33592467T>C	uc002nug.1	+	9	1381	c.1067T>C	c.(1066-1068)TTA>TCA	p.L356S		NM_018025	NP_060495	Q9BRR8	GPTC1_HUMAN	G patch domain containing 1	356						catalytic step 2 spliceosome	nucleic acid binding			skin(1)	1	Esophageal squamous(110;0.137)					TCTAAACCTTTATCTTCTAAG	0.308000													3	93	---	---	---	---	0	0	0.150653	0	0
LRRTM4	80059	broad.mit.edu	37	2	77746748	77746748	+	Missense_Mutation	SNP	C	T	T			TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chr2:77746748C>T	uc002snr.2	-	3	662	c.247G>A	c.(247-249)GGC>AGC	p.G83S	LRRTM4_uc002snq.2_Missense_Mutation_p.G83S|LRRTM4_uc002sns.2_Missense_Mutation_p.G83S|LRRTM4_uc002snt.2_Missense_Mutation_p.G84S	NM_001134745	NP_001128217	Q86VH4	LRRT4_HUMAN	leucine rich repeat transmembrane neuronal 4	83	LRR 1.|Extracellular (Potential).					integral to membrane				pancreas(3)|ovary(1)	4				Colorectal(11;0.059)		TGGTTAAGGCCGGCAAACTGA	0.403000													4	122	---	---	---	---	0	0	0.150653	0	0
LAMA5	3911	broad.mit.edu	37	20	60886750	60886750	+	Silent	SNP	C	T	T			TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chr20:60886750C>T	uc002ycq.2	-	71	9793	c.9726G>A	c.(9724-9726)CCG>CCA	p.P3242P		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	3242	Laminin G-like 3.				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GGAGGAGCCTCGGGGGCCCCT	0.667000													5	5	---	---	---	---	0	0	0.021553	0	0
LOC96610	96610	broad.mit.edu	37	22	22664141	22664141	+	RNA	SNP	G	A	A			TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chr22:22664141G>A	uc011aim.1	+	30		c.1998G>A			LOC96610_uc011aiq.1_RNA					Parts of antibodies, mostly variable regions.												0						AAATTTGAAGGTGCTGTGATT	0.448000													4	100	---	---	---	---	0	0	0.150653	0	0
TBC1D5	9779	broad.mit.edu	37	3	17349528	17349528	+	Missense_Mutation	SNP	A	G	G			TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chr3:17349528A>G	uc003cbf.2	-	14	2759	c.1094T>C	c.(1093-1095)GTA>GCA	p.V365A	TBC1D5_uc010heu.2_5'UTR|TBC1D5_uc010hev.2_Missense_Mutation_p.V365A|TBC1D5_uc003cbe.2_Missense_Mutation_p.V365A|TBC1D5_uc010hew.1_Missense_Mutation_p.V317A	NM_014744	NP_055559	Q92609	TBCD5_HUMAN	TBC1 domain family, member 5 isoform b	365						intracellular	protein binding|Rab GTPase activator activity			ovary(1)	1						GATATAATCTACTAAACCCAG	0.463000													3	83	---	---	---	---	0	0	0.115264	0	0
HNRPDL	9987	broad.mit.edu	37	4	83349287	83349287	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chr4:83349287G>A	uc003hmr.2	-	3	1193	c.658C>T	c.(658-660)CCC>TCC	p.P220S	ENOPH1_uc003hmv.2_5'Flank|ENOPH1_uc003hmw.2_5'Flank|ENOPH1_uc003hmx.2_5'Flank|HNRPDL_uc003hmq.2_RNA|HNRPDL_uc003hms.2_RNA|HNRPDL_uc003hmt.2_Missense_Mutation_p.P220S	NM_031372	NP_112740	O14979	HNRDL_HUMAN	heterogeneous nuclear ribonucleoprotein D-like	220	RRM 1.				regulation of transcription, DNA-dependent|RNA processing|transcription, DNA-dependent	cytoplasm|heterogeneous nuclear ribonucleoprotein complex	double-stranded DNA binding|nucleotide binding|poly(A) RNA binding|protein binding|single-stranded DNA binding			skin(1)	1		Hepatocellular(203;0.114)				GCCCTTTTGGGATCTATCAAT	0.373000													6	120	---	---	---	---	0	0	0.021553	0	0
C5orf42	65250	broad.mit.edu	37	5	37169637	37169637	+	Missense_Mutation	SNP	T	A	A			TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chr5:37169637T>A	uc011cpa.1	-	34	6720	c.6489A>T	c.(6487-6489)TTA>TTT	p.L2163F	C5orf42_uc011coy.1_Missense_Mutation_p.L663F|C5orf42_uc003jks.2_RNA|C5orf42_uc011coz.1_Missense_Mutation_p.L1238F|C5orf42_uc003jkr.1_Missense_Mutation_p.L196F	NM_023073	NP_075561	E9PH94	E9PH94_HUMAN	hypothetical protein LOC65250	2163										ovary(4)|breast(2)|skin(1)	7	all_lung(31;0.000616)		COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.177)|Colorectal(62;0.202)			TTAATTGACATAAAGGAATAC	0.368000													40	63	---	---	---	---	0	0	0.117977	0	0
STXBP5	134957	broad.mit.edu	37	6	147685192	147685192	+	Missense_Mutation	SNP	C	T	T			TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chr6:147685192C>T	uc003qlz.2	+	25	3132	c.2971C>T	c.(2971-2973)CGG>TGG	p.R991W	STXBP5_uc010khz.1_Missense_Mutation_p.R955W|STXBP5_uc003qlx.2_RNA|STXBP5_uc003qly.2_Missense_Mutation_p.R646W	NM_001127715	NP_001121187	Q5T5C0	STXB5_HUMAN	syntaxin binding protein 5 (tomosyn) isoform b	991					exocytosis|positive regulation of exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|nicotinic acetylcholine-gated receptor-channel complex|synaptic vesicle	syntaxin-1 binding				0		Ovarian(120;0.0164)		OV - Ovarian serous cystadenocarcinoma(155;1.77e-09)|GBM - Glioblastoma multiforme(68;0.0694)		TACCAATATGCGGATAGCCAG	0.363000													5	296	---	---	---	---	0	0	0.029380	0	0
LOC168474	168474	broad.mit.edu	37	7	64313091	64313091	+	Missense_Mutation	SNP	T	C	C			TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chr7:64313091T>C	uc003ttj.1	-	1	1088	c.536A>G	c.(535-537)GAT>GGT	p.D179G		NR_002789				SubName: Full=Selenophosphate synthetase 1; SubName: Full=Selenophosphate synthetase 1, isoform CRA_a;												0						CTTAGGAATATCCAGCCACTG	0.493000													9	53	---	---	---	---	0	0	0.092188	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				49	81	---	---	---	---	0	0	0.139131	0	0
ANXA1	301	broad.mit.edu	37	9	75775259	75775259	+	Silent	SNP	A	G	G			TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chr9:75775259A>G	uc004ajf.1	+	5	425	c.351A>G	c.(349-351)CAA>CAG	p.Q117Q	ANXA1_uc004aje.1_Silent_p.Q117Q|ANXA1_uc004ajg.1_Silent_p.Q117Q	NM_000700	NP_000691	P04083	ANXA1_HUMAN	annexin I	117					alpha-beta T cell differentiation|anti-apoptosis|cell surface receptor linked signaling pathway|cellular component movement|inflammatory response|keratinocyte differentiation|lipid metabolic process|peptide cross-linking|positive regulation of vesicle fusion	basolateral plasma membrane|cilium|cornified envelope|cytoplasm|extracellular region|nucleus	calcium ion binding|calcium-dependent phospholipid binding|phospholipase A2 inhibitor activity|protein binding, bridging|receptor binding|structural molecule activity			breast(1)|central_nervous_system(1)	2		all_epithelial(88;2.54e-11)		OV - Ovarian serous cystadenocarcinoma(323;2.82e-06)|GBM - Glioblastoma multiforme(74;0.0325)	Alclometasone(DB00240)|Amcinonide(DB00288)|Beclomethasone(DB00394)|Betamethasone(DB00443)|Clobetasol(DB01013)|Clocortolone(DB00838)|Desonide(DB01260)|Desoximetasone(DB00547)|Dexamethasone(DB01234)|Diflorasone(DB00223)|Flumethasone Pivalate(DB00663)|Halobetasol Propionate(DB00596)|Hydrocortamate(DB00769)|Hydrocortisone(DB00741)|Loteprednol Etabonate(DB00873)|Methylprednisolone(DB00959)|Mometasone(DB00764)|Prednicarbate(DB01130)|Prednisone(DB00635)|Rimexolone(DB00896)|Triamcinolone(DB00620)	CTCCAGCGCAATTTGATGCTG	0.383000													3	152	---	---	---	---	0	0	0.150653	0	0
PTGR1	22949	broad.mit.edu	37	9	114345802	114345802	+	Missense_Mutation	SNP	C	T	T			TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chr9:114345802C>T	uc004bfh.2	-	6	548	c.445G>A	c.(445-447)GCA>ACA	p.A149T	PTGR1_uc011lwr.1_Missense_Mutation_p.A149T|PTGR1_uc004bfi.3_Missense_Mutation_p.A149T|PTGR1_uc004bfj.3_Missense_Mutation_p.A26T|PTGR1_uc010mue.2_Missense_Mutation_p.A149T	NM_012212	NP_036344	Q14914	PTGR1_HUMAN	prostaglandin reductase 1 isoform 1	149					leukotriene metabolic process	cytoplasm	15-oxoprostaglandin 13-oxidase activity|2-alkenal reductase activity|alcohol dehydrogenase (NAD) activity|zinc ion binding				0						CCAGCTGCTGCATTAACCATC	0.428000													5	284	---	---	---	---	0	0	0.021553	0	0
OFD1	8481	broad.mit.edu	37	X	13778527	13778527	+	Nonsense_Mutation	SNP	A	T	T			TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chrX:13778527A>T	uc004cvp.3	+	16	2307	c.1948A>T	c.(1948-1950)AGA>TGA	p.R650*	OFD1_uc004cvr.3_Nonsense_Mutation_p.R217*|OFD1_uc011mil.1_Nonsense_Mutation_p.R217*|OFD1_uc004cvq.3_Nonsense_Mutation_p.R510*|OFD1_uc010nen.2_Nonsense_Mutation_p.R649*|OFD1_uc004cvs.3_RNA|OFD1_uc004cvu.3_Nonsense_Mutation_p.R609*|OFD1_uc004cvv.3_Nonsense_Mutation_p.R609*	NM_003611	NP_003602	O75665	OFD1_HUMAN	oral-facial-digital syndrome 1	650	Potential.|Mediates the interaction with SDCCAG8.|Mediates homooligomerization.				cilium movement involved in determination of left/right asymmetry|G2/M transition of mitotic cell cycle	centriole|cilium|cytosol|microtubule basal body|nuclear membrane	alpha-tubulin binding|gamma-tubulin binding				0						AAAGGCTTTCAGAAGTTACCA	0.478000													42	138	---	---	---	---	0	0	0.086207	0	0
PHEX	5251	broad.mit.edu	37	X	22112115	22112115	+	Silent	SNP	T	G	G			TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chrX:22112115T>G	uc004dah.2	+	7	950	c.747T>G	c.(745-747)CTT>CTG	p.L249L	PHEX_uc011mjr.1_Silent_p.L249L|PHEX_uc011mjs.1_Silent_p.L152L	NM_000444	NP_000435	P78562	PHEX_HUMAN	phosphate-regulating neutral endopeptidase	249	Extracellular (Potential).				biomineral tissue development|cell-cell signaling|protein modification process|proteolysis|skeletal system development	integral to plasma membrane	aminopeptidase activity|metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3						GGGATGCCCTTTACAAGTTCA	0.413000													23	233	---	---	---	---	0	0	0.091800	0	0
DLGAP3	58512	broad.mit.edu	37	1	35370150	35370151	+	Frame_Shift_Ins	INS	-	C	C			TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chr1:35370150_35370151insC	uc001byc.2	-	1	834_835	c.834_835insG	c.(832-837)AGGCCCfs	p.R278fs		NM_001080418	NP_001073887	O95886	DLGP3_HUMAN	discs, large (Drosophila) homolog-associated	278_279					cell-cell signaling	cell junction|postsynaptic density|postsynaptic membrane				ovary(3)	3		Myeloproliferative disorder(586;0.0393)				TCCCCAGGGGGCCTCCCACCCG	0.673													7	162	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	37568551	37568552	+	IGR	INS	-	AAG	AAG	rs150976754	by1000genomes	TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chr1:37568551_37568552insAAG								GRIK3 (68707 upstream) : ZC3H12A (371567 downstream)																							aggaggaggaagaggaggagga	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	235011949	235011951	+	IGR	DEL	CTG	-	-			TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chr1:235011949_235011951delCTG								IRF2BP2 (266678 upstream) : TOMM20 (260709 downstream)																							AGGGCCTAATCTGCTGCTGCTGC	0.680													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	135455791	135455792	+	IGR	DEL	TG	-	-			TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chr10:135455791_135455792delTG								FRG2B (15492 upstream) : LOC653544 (34487 downstream)																							TTGGAGACACTGTGTTATCTTA	0.381													3	6	---	---	---	---					
LPXN	9404	broad.mit.edu	37	11	58343414	58343414	+	5'Flank	DEL	T	-	-	rs34461980		TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chr11:58343414delT	uc001nmw.2	-						LPXN_uc009ymp.2_5'Flank|LPXN_uc010rkj.1_Intron|LPXN_uc010rkk.1_Intron	NM_004811	NP_004802	O60711	LPXN_HUMAN	leupaxin isoform 2						cell adhesion|protein complex assembly|signal transduction	cytoplasm	zinc ion binding			ovary(1)	1		Breast(21;0.00725)|all_epithelial(135;0.0101)|all_lung(304;0.24)				TTTGGTGAGCTTTTTTTTTTT	0.388													4	6	---	---	---	---					
ZNF268	10795	broad.mit.edu	37	12	133780834	133780834	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chr12:133780834delC	uc010tcf.1	+	6	2892	c.2562delC	c.(2560-2562)CACfs	p.H854fs	ZNF268_uc010tbv.1_Frame_Shift_Del_p.H693fs|ZNF268_uc010tbw.1_Frame_Shift_Del_p.H693fs|ZNF268_uc010tbx.1_Frame_Shift_Del_p.H714fs|ZNF268_uc010tby.1_Frame_Shift_Del_p.H693fs|ZNF268_uc010tbz.1_Frame_Shift_Del_p.H693fs|ZNF268_uc010tca.1_Frame_Shift_Del_p.H693fs|ZNF268_uc010tcb.1_Frame_Shift_Del_p.H714fs|ZNF268_uc010tcc.1_Frame_Shift_Del_p.H693fs|ZNF268_uc010tcd.1_Frame_Shift_Del_p.H693fs|ZNF268_uc010tce.1_Frame_Shift_Del_p.H693fs|ZNF268_uc010tcg.1_Frame_Shift_Del_p.H693fs|ZNF268_uc010tch.1_Frame_Shift_Del_p.H854fs	NM_003415	NP_003406	Q14587	ZN268_HUMAN	zinc finger protein 268 isoform a	854	C2H2-type 21.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_cancers(7;0.000215)|all_epithelial(31;0.096)		OV - Ovarian serous cystadenocarcinoma(86;3.58e-08)|Epithelial(86;6.6e-07)|all cancers(50;2.28e-05)		TTCTTGTACACCAGAGAATGC	0.413													2	4	---	---	---	---					
LOC284232	284232	broad.mit.edu	37	13	19420047	19420053	+	RNA	DEL	TTCGTAT	-	-	rs117180361	by1000genomes	TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chr13:19420047_19420053delTTCGTAT	uc010tcj.1	-	1		c.26057_26063delATACGAA				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						ATAACATTTCTTCGTATTTTATATTTT	0.246													4	7	---	---	---	---					
Unknown	0	broad.mit.edu	37	14	54366924	54366927	+	IGR	DEL	GAAG	-	-			TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chr14:54366924_54366927delGAAG								DDHD1 (746878 upstream) : BMP4 (49530 downstream)																							aggaaggaaagaaggaaggaagga	0.015													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	14	95193580	95193580	+	IGR	DEL	A	-	-			TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chr14:95193580delA								SERPINA13 (80250 upstream) : GSC (40981 downstream)																							TCAGTTTCTTAAaaaaaaaaa	0.363													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	84958415	84958426	+	IGR	DEL	CGAGGACATTGG	-	-			TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chr15:84958415_84958426delCGAGGACATTGG								LOC388152 (59495 upstream) : GOLGA6L5 (89312 downstream)																							TCGGGCACCACGAGGACATTGGTGAGGACAGG	0.557													5	6	---	---	---	---					
CDC27	996	broad.mit.edu	37	17	45219612	45219612	+	Frame_Shift_Del	DEL	A	-	-			TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chr17:45219612delA	uc002ild.3	-	11	1488	c.1361delT	c.(1360-1362)CTAfs	p.L454fs	CDC27_uc002ile.3_Frame_Shift_Del_p.L460fs|CDC27_uc002ilf.3_Frame_Shift_Del_p.L454fs|CDC27_uc010wkp.1_Frame_Shift_Del_p.L393fs|CDC27_uc010wkq.1_Intron	NM_001256	NP_001247	P30260	CDC27_HUMAN	cell division cycle protein 27 isoform 2	454					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell proliferation|mitotic cell cycle spindle assembly checkpoint|mitotic metaphase/anaphase transition|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|centrosome|cytosol|nucleoplasm|spindle microtubule	protein phosphatase binding			lung(2)|breast(2)|ovary(1)	5						TGCTTTTTGTAGATTAAAGGC	0.308													10	87	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	19944580	19944580	+	IGR	DEL	T	-	-			TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chr19:19944580delT								ZNF506 (12020 upstream) : ZNF253 (32134 downstream)																							ATGTTTAATCttttttttttt	0.119													3	5	---	---	---	---					
SARS2	54938	broad.mit.edu	37	19	39422788	39422789	+	5'Flank	INS	-	A	A	rs57541708		TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chr19:39422788_39422789insA	uc002oka.2	-						SARS2_uc002ojz.2_5'Flank|SARS2_uc010xup.1_5'Flank|SARS2_uc002okb.2_5'Flank|SARS2_uc010xuq.1_Intron|SARS2_uc010xur.1_5'Flank|SARS2_uc010xus.1_5'Flank|MRPS12_uc002okc.2_Intron|MRPS12_uc002okd.2_Intron|MRPS12_uc002oke.2_Intron	NM_017827	NP_060297	Q9NP81	SYSM_HUMAN	seryl-tRNA synthetase 2 isoform b precursor						seryl-tRNA aminoacylation	mitochondrial matrix	ATP binding|protein binding|serine-tRNA ligase activity			ovary(1)|pancreas(1)|skin(1)	3	all_cancers(60;2.74e-06)|all_epithelial(25;4.36e-06)|Ovarian(47;0.0454)		Lung(45;0.000419)|LUSC - Lung squamous cell carcinoma(53;0.000554)			aaaaaaaaaagaaaaaaaaaaa	0.134													2	4	---	---	---	---					
CD3EAP	10849	broad.mit.edu	37	19	45911859	45911861	+	In_Frame_Del	DEL	GAA	-	-			TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chr19:45911859_45911861delGAA	uc002pbq.1	+	3	1121_1123	c.633_635delGAA	c.(631-636)CGGAAG>CGG	p.K217del	PPP1R13L_uc002pbo.2_5'Flank|PPP1R13L_uc002pbp.2_5'Flank|CD3EAP_uc002pbr.1_In_Frame_Del_p.K219del	NM_012099	NP_036231	O15446	RPA34_HUMAN	CD3E antigen, epsilon polypeptide associated	217	Poly-Lys.				rRNA transcription|transmembrane receptor protein tyrosine kinase signaling pathway	chromosome|RNA polymerase I transcription factor complex	DNA-directed RNA polymerase activity			large_intestine(2)|ovary(2)	4		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0251)		TGGATGTGCGGAAGAAGAAGAAG	0.581													7	220	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	91764930	91764935	+	IGR	DEL	TGTGTA	-	-	rs4005278		TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chr2:91764930_91764935delTGTGTA								None (None upstream) : LOC654342 (40257 downstream)																							tgtgtgtgtgtgtgtatatatataca	0.015													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	92321637	92321637	+	IGR	DEL	A	-	-			TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chr2:92321637delA								FKSG73 (191143 upstream) : None (None downstream)																							ctttcttttcagagagcagtt	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	177065588	177065588	+	IGR	DEL	T	-	-			TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chr2:177065588delT								HOXD1 (9953 upstream) : MTX2 (68535 downstream)																							tggttacttctTTTTTTTTTT	0.164													4	9	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	218879593	218879594	+	IGR	INS	-	GGAAGGAA	GGAAGGAA	rs61462261		TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chr2:218879593_218879594insGGAAGGAA								TNS1 (11875 upstream) : RUFY4 (20117 downstream)																							gaaggaaggacggaaggaagga	0.069													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	29449677	29449678	+	IGR	DEL	CC	-	-			TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chr20:29449677_29449678delCC								None (None upstream) : FRG1B (162201 downstream)																							AACACACACACCCATCAAAAAT	0.312													7	31	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	77840873	77840884	+	IGR	DEL	TTCCTTCCTTCC	-	-			TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chr4:77840873_77840884delTTCCTTCCTTCC								ANKRD56 (21871 upstream) : SEPT11 (30011 downstream)																							gcctgcttctttccttccttccttccttcctt	0.000													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	56431160	56431161	+	IGR	INS	-	A	A	rs71528887		TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chr7:56431160_56431161insA								PSPH (247070 upstream) : DKFZp434L192 (132755 downstream)																							CCTTCTCCCACGGGGGGTACAC	0.584													5	10	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	67791249	67791250	+	5'Flank	DEL	AC	-	-	rs74992488		TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chr9:67791249_67791250delAC	uc004aes.1	+											Homo sapiens cDNA FLJ36039 fis, clone TESTI2017311.																		agaatgggagacacacacacac	0.064													4	2	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	118913001	118913008	+	IGR	DEL	GGAGGGAA	-	-	rs66547601		TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chrX:118913001_118913008delGGAGGGAA								ANKRD58 (18837 upstream) : RPL39 (7461 downstream)																							aggaagggagggagggaaggaaggaagg	0.125													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	Y	13501672	13501674	+	IGR	DEL	AAT	-	-			TCGA-DJ-A13P-01A-11D-A10S-08	TCGA-DJ-A13P-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	2d67fb1e-4411-4aca-8d9a-f76dad5e03fb	541aed7f-ed74-4214-b7d3-85c7dc551738	g.chrY:13501672_13501674delAAT								None (None upstream) : None (None downstream)																							TCTTACCAACAATATTTGATTCA	0.217													5	2	---	---	---	---					
