Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CLCC1	23155	broad.mit.edu	37	1	109492526	109492526	+	Silent	SNP	T	C	C			TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chr1:109492526T>C	uc001dwe.1	-	3	239	c.147A>G	c.(145-147)TCA>TCG	p.S49S	AKNAD1_uc010ovb.1_Intron|CLCC1_uc001dwf.1_Silent_p.S49S|CLCC1_uc001dwg.1_Silent_p.S49S|CLCC1_uc009wes.1_Silent_p.S49S|CLCC1_uc009wet.1_Silent_p.S49S|CLCC1_uc001dwh.1_Silent_p.S49S	NM_001048210	NP_001041675	Q96S66	CLCC1_HUMAN	Mid-1-related chloride channel 1 isoform 1	49						endoplasmic reticulum|Golgi apparatus|integral to membrane|nucleus				liver(1)	1		all_epithelial(167;0.000114)|all_lung(203;0.000321)|Lung NSC(277;0.000626)		Colorectal(144;0.0314)|Lung(183;0.0924)|COAD - Colon adenocarcinoma(174;0.119)|Epithelial(280;0.231)		CCTTTTCCCCTGAAATACCAT	0.289000													4	89	---	---	---	---	0	0	0.009096	0	0
RAB25	57111	broad.mit.edu	37	1	156038145	156038145	+	Silent	SNP	G	A	A			TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chr1:156038145G>A	uc001fnc.2	+	3	550	c.324G>A	c.(322-324)AAG>AAA	p.K108K		NM_020387	NP_065120	P57735	RAB25_HUMAN	RAB25	108					positive regulation of cell proliferation|protein transport|pseudopodium organization|small GTPase mediated signal transduction	cytoplasmic membrane-bounded vesicle|pseudopodium membrane	GTP binding|identical protein binding				0	Hepatocellular(266;0.158)|all_neural(408;0.195)					GATGGCTGAAGGAGCTCTATG	0.582000													5	211	---	---	---	---	0	0	0.014758	0	0
SCYL3	57147	broad.mit.edu	37	1	169857896	169857896	+	Missense_Mutation	SNP	G	T	T			TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chr1:169857896G>T	uc001ggs.2	-	2	284	c.86C>A	c.(85-87)GCT>GAT	p.A29D	SCYL3_uc001ggt.2_Missense_Mutation_p.A29D|SCYL3_uc001ggu.2_RNA	NM_181093	NP_851607	Q8IZE3	PACE1_HUMAN	SCY1-like 3 isoform 2	29	Protein kinase.				cell migration	Golgi apparatus|lamellipodium	ATP binding|protein binding|protein kinase activity			ovary(1)|skin(1)	2	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					TTGCAGTACAGCGGGATAAAC	0.418000													4	112	---	---	---	---	0.000602214	0.000680764	0.014758	1	0
OR2L3	391192	broad.mit.edu	37	1	248224344	248224344	+	Missense_Mutation	SNP	C	T	T			TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chr1:248224344C>T	uc001idx.1	+	1	361	c.361C>T	c.(361-363)CGT>TGT	p.R121C	OR2L13_uc001ids.2_Intron	NM_001004687	NP_001004687	Q8NG85	OR2L3_HUMAN	olfactory receptor, family 2, subfamily L,	121	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			GGCCTATGATCGTTACATTGC	0.443000													136	182	---	---	---	---	0	0	0.139131	0	0
LOC642826	642826	broad.mit.edu	37	10	47207813	47207813	+	RNA	SNP	T	C	C			TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chr10:47207813T>C	uc001jei.2	-	12		c.1586A>G			uc009xnf.2_Missense_Mutation_p.H132R					Homo sapiens cDNA, FLJ99065.												0						TTTACTTACATGGTTTGTACA	0.294000													4	54	---	---	---	---	0	0	0.009096	0	0
OR5L2	26338	broad.mit.edu	37	11	55594762	55594762	+	Nonsense_Mutation	SNP	T	A	A			TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chr11:55594762T>A	uc001nhy.1	+	1	68	c.68T>A	c.(67-69)TTG>TAG	p.L23*		NM_001004739	NP_001004739	Q8NGL0	OR5L2_HUMAN	olfactory receptor, family 5, subfamily L,	23	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_epithelial(135;0.208)				GTCCCTGAGTTGAGAGTCTGC	0.488000										HNSCC(27;0.073)			7	368	---	---	---	---	0	0	0.029380	0	0
SDHD	6392	broad.mit.edu	37	11	111959647	111959647	+	Missense_Mutation	SNP	C	T	T			TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chr11:111959647C>T	uc001pmz.2	+	3	287	c.226C>T	c.(226-228)CTC>TTC	p.L76F	TIMM8B_uc001pmx.2_5'Flank|TIMM8B_uc001pmy.2_5'Flank	NM_003002	NP_002993	O14521	DHSD_HUMAN	succinate dehydrogenase complex, subunit D	76	Helical; (By similarity).				respiratory electron transport chain|transport|tricarboxylic acid cycle	integral to membrane|mitochondrial respiratory chain complex II	electron carrier activity|heme binding|succinate dehydrogenase activity|ubiquinone binding				0		all_cancers(61;5.7e-14)|all_epithelial(67;3.4e-08)|Melanoma(852;8.81e-06)|all_hematologic(158;0.000405)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0112)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		Epithelial(105;6.13e-07)|BRCA - Breast invasive adenocarcinoma(274;6.17e-07)|all cancers(92;1.05e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0515)	Succinic acid(DB00139)	CAGTGTTTTGCTCCTGGGTCT	0.498000			Mis|N|F|S			paraganglioma|pheochromocytoma			Familial_Paragangliomas|Carney-Stratakis_syndrome|Cowden_syndrome				5	89	---	---	---	---	0	0	0.014758	0	0
TPH2	121278	broad.mit.edu	37	12	72388217	72388217	+	Splice_Site	SNP	A	G	G			TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chr12:72388217A>G	uc009zrw.1	+	8	1083	c.942_splice	c.e8-2	p.P314_splice	TPH2_uc001swy.2_Splice_Site_p.P224_splice	NM_173353	NP_775489	Q8IWU9	TPH2_HUMAN	tryptophan hydroxylase 2						aromatic amino acid family metabolic process|hormone biosynthetic process|serotonin biosynthetic process	cytosol	amino acid binding|iron ion binding|tryptophan 5-monooxygenase activity			ovary(2)|central_nervous_system(1)|skin(1)	4					L-Tryptophan(DB00150)	CTTTTTTGTCAGAGACACATG	0.393000													82	101	---	---	---	---	0	0	0.139131	0	0
NAV3	89795	broad.mit.edu	37	12	78515989	78515989	+	Missense_Mutation	SNP	C	T	T			TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chr12:78515989C>T	uc001syp.2	+	16	4192	c.4019C>T	c.(4018-4020)ACA>ATA	p.T1340I	NAV3_uc001syo.2_Missense_Mutation_p.T1340I|NAV3_uc010sub.1_Missense_Mutation_p.T840I|NAV3_uc009zsf.2_Intron	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	1340	Ser-rich.					nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						CACTCTTTCACATCAGGTGGT	0.517000										HNSCC(70;0.22)			13	165	---	---	---	---	0	0	0.105934	0	0
Unknown	0	broad.mit.edu	37	17	39296226	39296226	+	RNA	SNP	G	A	A			TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chr17:39296226G>A	uc010cxk.1	-	1		c.478C>T								Homo sapiens partial mRNA for keratin associated protein 4.6 (KRTAP4.6 gene).																		CAGACTGGACGCAGgcagcag	0.318000													5	3	---	---	---	---	0	0	0.029380	0	0
SDK2	54549	broad.mit.edu	37	17	71375612	71375612	+	Silent	SNP	C	T	T	rs144878236	byFrequency	TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chr17:71375612C>T	uc010dfm.2	-	35	4839	c.4839G>A	c.(4837-4839)CCG>CCA	p.P1613P	SDK2_uc002jjt.3_Silent_p.P753P|SDK2_uc010dfn.2_Silent_p.P1292P	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	1613	Extracellular (Potential).|Fibronectin type-III 10.				cell adhesion	integral to membrane				ovary(2)	2						AGACCTCCTGCGGGGGGCTGG	0.657000													17	28	---	---	---	---	0	0	0.049695	0	0
KANK2	25959	broad.mit.edu	37	19	11287390	11287390	+	Missense_Mutation	SNP	C	T	T			TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chr19:11287390C>T	uc010dxv.2	-	9	2182	c.1624G>A	c.(1624-1626)GCC>ACC	p.A542T	KANK2_uc002mqm.2_Missense_Mutation_p.A550T|KANK2_uc002mqo.3_Missense_Mutation_p.A542T|KANK2_uc002mqp.1_Missense_Mutation_p.A351T	NM_015493	NP_056308	Q63ZY3	KANK2_HUMAN	ankyrin repeat domain 25 isoform 1	542											0						GGGGCTTCGGCCACACTCGGA	0.622000													27	112	---	---	---	---	0	0	0.099896	0	0
TNS1	7145	broad.mit.edu	37	2	218696243	218696243	+	Missense_Mutation	SNP	G	C	C			TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chr2:218696243G>C	uc002vgt.2	-	20	3331	c.2933C>G	c.(2932-2934)ACA>AGA	p.T978R	TNS1_uc002vgr.2_Missense_Mutation_p.T978R|TNS1_uc002vgs.2_Missense_Mutation_p.T978R|TNS1_uc010zjv.1_Missense_Mutation_p.T978R	NM_022648	NP_072174	Q9HBL0	TENS1_HUMAN	tensin	978						cytoplasm|cytoskeleton|focal adhesion	actin binding			ovary(3)|breast(1)	4		Renal(207;0.0483)|Lung NSC(271;0.213)		Epithelial(149;4.43e-06)|all cancers(144;0.000653)|LUSC - Lung squamous cell carcinoma(224;0.0091)|Lung(261;0.013)		AGACAGGGGTGTCTTGGCCAG	0.652000													8	14	---	---	---	---	0	0	0.058154	0	0
TPST2	8459	broad.mit.edu	37	22	26937461	26937461	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chr22:26937461G>A	uc003acv.2	-	2	304	c.136C>T	c.(136-138)CGG>TGG	p.R46W	TPST2_uc003acw.2_Missense_Mutation_p.R46W|TPST2_uc003acx.2_Missense_Mutation_p.R46W|TPST2_uc011akf.1_Missense_Mutation_p.R46W	NM_003595	NP_003586	O60704	TPST2_HUMAN	tyrosylprotein sulfotransferase 2	46	Lumenal (Potential).				peptidyl-tyrosine sulfation	endoplasmic reticulum|Golgi membrane|integral to membrane|membrane fraction	protein-tyrosine sulfotransferase activity			central_nervous_system(1)	1						TGCTCAGGCCGCATGGCCCCC	0.701000													3	51	---	---	---	---	0	0	0.009096	0	0
ABI3BP	25890	broad.mit.edu	37	3	100567712	100567712	+	Silent	SNP	C	T	T			TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chr3:100567712C>T	uc003dun.2	-	16	1468	c.1383G>A	c.(1381-1383)CAG>CAA	p.Q461Q	ABI3BP_uc003duo.2_Silent_p.Q503Q|ABI3BP_uc011bhd.1_5'Flank|ABI3BP_uc003dum.2_5'Flank	NM_015429	NP_056244	Q7Z7G0	TARSH_HUMAN	ABI gene family, member 3 (NESH) binding protein	461	Pro-rich.					extracellular space				ovary(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)	4						ATGTAGTTTGCTGGGGAGCTG	0.353000													3	75	---	---	---	---	0	0	0.009096	0	0
EPHB1	2047	broad.mit.edu	37	3	134670486	134670486	+	Missense_Mutation	SNP	C	T	T			TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chr3:134670486C>T	uc003eqt.2	+	3	617	c.397C>T	c.(397-399)CCC>TCC	p.P133S	EPHB1_uc010htz.1_RNA|EPHB1_uc011bly.1_Missense_Mutation_p.P133S	NM_004441	NP_004432	P54762	EPHB1_HUMAN	ephrin receptor EphB1 precursor	133	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding			lung(11)|ovary(6)|stomach(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|pancreas(1)	30						GTCTGAGGCCCCCTACCTCAA	0.507000													72	182	---	---	---	---	0	0	0.139131	0	0
SEC62	7095	broad.mit.edu	37	3	169700673	169700673	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chr3:169700673G>A	uc003fgg.2	+	4	461	c.430G>A	c.(430-432)GAT>AAT	p.D144N	SEC62_uc003fgh.2_Missense_Mutation_p.D144N	NM_003262	NP_003253	Q99442	SEC62_HUMAN	translocation protein 1	144	Cytoplasmic (Potential).				cotranslational protein targeting to membrane|transmembrane transport	aggresome|endoplasmic reticulum membrane|integral to membrane|intermediate filament cytoskeleton|rough endoplasmic reticulum	protein transporter activity|receptor activity			ovary(1)	1						gaaaaaaaaagatggtgaaaa	0.124000													3	48	---	---	---	---	0	0	0.115264	0	0
C6orf125	84300	broad.mit.edu	37	6	33669185	33669185	+	Missense_Mutation	SNP	C	G	G			TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chr6:33669185C>G	uc003ofa.1	-	2	192	c.151G>C	c.(151-153)GAG>CAG	p.E51Q	C6orf125_uc003oez.1_5'Flank|C6orf125_uc010jve.1_RNA	NM_032340	NP_115716	Q9BRT2	CF125_HUMAN	hypothetical protein LOC84300	51											0						TCACAGGCCTCAGGCTCTGCA	0.473000													6	143	---	---	---	---	0	0	0.021553	0	0
CACNA1B	774	broad.mit.edu	37	9	140809138	140809138	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chr9:140809138G>A	uc004cog.2	+	5	800	c.655G>A	c.(655-657)GCC>ACC	p.A219T		NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	219	Cytoplasmic (Potential).|I.				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	CATCATGAAGGCCATGGTTCC	0.557000													12	29	---	---	---	---	0	0	0.080935	0	0
OCRL	4952	broad.mit.edu	37	X	128709875	128709875	+	Missense_Mutation	SNP	T	A	A			TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chrX:128709875T>A	uc004euq.2	+	17	1880	c.1715T>A	c.(1714-1716)TTT>TAT	p.F572Y	OCRL_uc004eur.2_Missense_Mutation_p.F572Y	NM_000276	NP_000267	Q01968	OCRL_HUMAN	phosphatidylinositol polyphosphate 5-phosphatase	572					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	clathrin-coated vesicle|cytosol|early endosome|Golgi stack|Golgi-associated vesicle	GTPase activator activity|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|protein binding			lung(2)|ovary(1)|kidney(1)	4						ATTCCCCAGTTTGTGTTTGAA	0.393000													81	111	---	---	---	---	0	0	0.139131	0	0
OCRL	4952	broad.mit.edu	37	X	128709895	128709895	+	Missense_Mutation	SNP	T	C	C			TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chrX:128709895T>C	uc004euq.2	+	17	1900	c.1735T>C	c.(1735-1737)TTT>CTT	p.F579L	OCRL_uc004eur.2_Missense_Mutation_p.F579L	NM_000276	NP_000267	Q01968	OCRL_HUMAN	phosphatidylinositol polyphosphate 5-phosphatase	579					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	clathrin-coated vesicle|cytosol|early endosome|Golgi stack|Golgi-associated vesicle	GTPase activator activity|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|protein binding			lung(2)|ovary(1)|kidney(1)	4						AAATGTGAAGTTTCGGCAACT	0.408000													85	129	---	---	---	---	0	0	0.139131	0	0
Unknown	0	broad.mit.edu	37	1	22569995	22569998	+	IGR	DEL	GGCC	-	-	rs67409781		TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chr1:22569995_22569998delGGCC								WNT4 (99610 upstream) : ZBTB40 (208346 downstream)																							caggcaggcaggccggcaggcaAA	0.294													5	1	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	162386059	162386070	+	IGR	DEL	AAGGAAGGAAGG	-	-	rs72400453		TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chr1:162386059_162386070delAAGGAAGGAAGG								SH2D1B (4131 upstream) : UHMK1 (80894 downstream)																							AGAGAGATgaaaggaaggaaggaaggaaggaa	0.127													2	4	---	---	---	---					
XCL2	6846	broad.mit.edu	37	1	168513367	168513367	+	5'Flank	DEL	A	-	-			TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chr1:168513367delA	uc001gfn.3	-							NM_003175	NP_003166	Q9UBD3	XCL2_HUMAN	chemokine (C motif) ligand 2 precursor						blood circulation|chemotaxis|immune response|signal transduction	extracellular space	chemokine activity			ovary(1)	1	all_hematologic(923;0.215)					TATTTTTCTTAAAAAAAAAAA	0.423													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	205532587	205532590	+	IGR	DEL	TTCC	-	-	rs72122482		TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chr1:205532587_205532590delTTCC								LOC284578 (6824 upstream) : MFSD4 (5522 downstream)																							tttcctttctttccttccttcctt	0.000													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	100328635	100328640	+	IGR	DEL	CTTTTC	-	-			TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chr15:100328635_100328640delCTTTTC								LYSMD4 (55009 upstream) : C15orf51 (1721 downstream)																							cctttcctttcttttccttttccttt	0.039													5	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	32095553	32095553	+	IGR	DEL	G	-	-			TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chr16:32095553delG								ZNF267 (166927 upstream) : HERC2P4 (67057 downstream)																							CTGGGGCCCCGAGGGAGATGT	0.642													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	32177847	32177850	+	IGR	DEL	TTGA	-	-			TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chr16:32177847_32177850delTTGA								HERC2P4 (13973 upstream) : TP53TG3B (506991 downstream)																							GATGCAATTGTTGACTCACCAAGC	0.368													4	9	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	33395820	33395821	+	IGR	INS	-	CAG	CAG	rs144984499	by1000genomes	TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chr16:33395820_33395821insCAG								SLC6A10P (499357 upstream) : MIR1826 (569687 downstream)																							aataataataataataatTTTT	0.183													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	53757596	53757597	+	IGR	DEL	GT	-	-	rs140212461		TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chr17:53757596_53757597delGT								MMD (258255 upstream) : TMEM100 (39393 downstream)																							agctgttctcgtgtgtgtgtgt	0.000													4	3	---	---	---	---					
CSH2	1443	broad.mit.edu	37	17	61952984	61952985	+	5'Flank	INS	-	CTTC	CTTC	rs3109940		TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chr17:61952984_61952985insCTTC	uc002jch.2	-						CSH2_uc002jcg.2_5'Flank|CSH2_uc002jci.2_5'Flank|GH2_uc002jcj.2_Intron|CSH2_uc002jck.2_Intron	NM_020991	NP_066271	P01243	CSH_HUMAN	chorionic somatomammotropin hormone 2 isoform 1						female pregnancy|signal transduction	extracellular region	hormone activity|metal ion binding				0						ttccttcctttcttccttcctt	0.000													5	6	---	---	---	---					
JUNB	3726	broad.mit.edu	37	19	12903374	12903374	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chr19:12903374delG	uc002mvc.2	+	1	1065	c.789delG	c.(787-789)ATGfs	p.M263fs	JUNB_uc002mvb.2_RNA	NM_002229	NP_002220	P17275	JUNB_HUMAN	jun B proto-oncogene	263						chromatin|nucleus	protein dimerization activity|transcription coactivator activity|transcription corepressor activity			lung(2)|central_nervous_system(1)	3						CCATCAACATGGAAGACCAAG	0.706													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	16134297	16134308	+	IGR	DEL	TTCCTTCCTTCC	-	-			TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chr2:16134297_16134308delTTCCTTCCTTCC								MYCN (47169 upstream) : FAM49A (599593 downstream)																							tcttttttctttccttccttccttccttcctt	0.000													3	5	---	---	---	---					
PTPN18	26469	broad.mit.edu	37	2	131129929	131129934	+	In_Frame_Del	DEL	GACGGG	-	-	rs112040677		TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chr2:131129929_131129934delGACGGG	uc002trc.2	+	13	1214_1219	c.1113_1118delGACGGG	c.(1111-1119)CAGACGGGG>CAG	p.TG378del	PTPN18_uc002trd.2_In_Frame_Del_p.TG357del|PTPN18_uc002trb.2_In_Frame_Del_p.TG271del|PTPN18_uc002tre.2_In_Frame_Del_p.TG29del	NM_014369	NP_055184	Q99952	PTN18_HUMAN	protein tyrosine phosphatase, non-receptor type	378_379				Missing (in Ref. 1; CAA56105).		cytoplasm|nucleus	non-membrane spanning protein tyrosine phosphatase activity			ovary(3)|kidney(1)	4	Colorectal(110;0.1)					gtgggacgcagacggggacggggacg	0.568													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	217475031	217475032	+	IGR	INS	-	AA	AA	rs72040741		TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chr2:217475031_217475032insAA								RPL37A (108845 upstream) : IGFBP2 (23095 downstream)																							AATTTTATTTCAAAAAAAAAAA	0.351													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	222809530	222809530	+	IGR	DEL	A	-	-			TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chr2:222809530delA								EPHA4 (370608 upstream) : PAX3 (255077 downstream)																							TCTTTGATACAAAAAAAAAAA	0.294													4	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	233282752	233282753	+	IGR	DEL	GT	-	-	rs58479826		TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chr2:233282752_233282753delGT								ALPPL2 (7330 upstream) : ALPI (38080 downstream)																							GGGGGGGGGGGTGATCTTCTGC	0.574													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	44624572	44624595	+	IGR	DEL	TCCTTCCTTCCTTCCTTCCTTCCC	-	-	rs149904626	by1000genomes	TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chr20:44624572_44624595delTCCTTCCTTCCTTCCTTCCTTCCC								ZNF335 (23739 upstream) : MMP9 (12952 downstream)																							cttccttccttccttccttccttccttccttccctccttccttc	0.107													5	1	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	9769171	9769172	+	RNA	INS	-	TT	TT			TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chr21:9769171_9769172insTT	uc011abu.1	+	10		c.1146_1147insTT								Homo sapiens, clone IMAGE:4720764, mRNA.																		GAAATTGAATCATCAGTCTAGA	0.381													7	8	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	44756755	44756755	+	IGR	DEL	A	-	-			TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chr21:44756755delA								CRYAA (163842 upstream) : SIK1 (77643 downstream)																							caccatcaccaccaccatcac	0.000													3	5	---	---	---	---					
APOL5	80831	broad.mit.edu	37	22	36113785	36113786	+	5'Flank	INS	-	AA	AA	rs71322979		TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chr22:36113785_36113786insAA	uc003aof.2	+							NM_030642	NP_085145	Q9BWW9	APOL5_HUMAN	apolipoprotein L5						lipid metabolic process|lipid transport|lipoprotein metabolic process	cytoplasm|extracellular region	high-density lipoprotein particle binding|lipid binding|protein binding				0						agctccatcgcaaaaaaaaaaa	0.139													4	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	22	49466848	49466850	+	IGR	DEL	GTT	-	-	rs72159977		TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chr22:49466848_49466850delGTT								FAM19A5 (319106 upstream) : C22orf34 (341326 downstream)																							tcgttccttcgttccttccttcc	0.108													4	7	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	118075080	118075081	+	IGR	INS	-	A	A			TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chr4:118075080_118075081insA								TRAM1L1 (68344 upstream) : NDST3 (879692 downstream)																							agattacatctaaaaaaaaaaa	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	20095674	20095675	+	IGR	INS	-	AAGAAAGG	AAGAAAGG	rs59909046		TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chr5:20095674_20095675insAAGAAAGG								CDH18 (107367 upstream) : None (None downstream)																							gaaagaaaggaaagaaaggaag	0.054													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	102138851	102138890	+	IGR	DEL	AAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG	-	-	rs72377118		TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chr5:102138851_102138890delAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG								SLCO6A1 (304131 upstream) : PAM (62637 downstream)																							gaaagaaagaaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaa	0.083													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	106085763	106085766	+	IGR	DEL	GAAG	-	-			TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chr5:106085763_106085766delGAAG								None (None upstream) : EFNA5 (626825 downstream)																							taaaaagacagaaggaaggaagga	0.000													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	12514213	12514236	+	IGR	DEL	CACACACACACACACACACACGCG	-	-	rs145031469	by1000genomes	TCGA-DJ-A13W-01A-11D-A10S-08	TCGA-DJ-A13W-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0c18a8b7-bad1-4aa4-a6df-472f89d9761c	af0cf9aa-5510-4af9-9bb4-a7e25e446245	g.chr6:12514213_12514236delCACACACACACACACACACACGCG								EDN1 (216787 upstream) : PHACTR1 (202652 downstream)																							cacacacacacacacacacacacacacacacgcgcacacacaca	0.308													2	4	---	---	---	---					
