Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CROCCL1	84809	broad.mit.edu	37	1	16945409	16945409	+	RNA	SNP	T	A	A	rs13566		TCGA-DJ-A2Q8-01A-11D-A18F-08	TCGA-DJ-A2Q8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fa837b4d-55a7-4dcf-9fdf-cf9c13644df7	cf88aecb-dc11-4f6f-9072-bc153c7a62d9	g.chr1:16945409T>A	uc010ocf.1	-	4		c.748A>T			CROCCL1_uc009vov.1_RNA|CROCCL1_uc001aze.2_RNA|CROCCL1_uc001azf.2_RNA					Homo sapiens mRNA for FLJ00313 protein.												0						GCGGGATAGCTCGGTGGAGAG	0.612000													6	39	---	---	---	---	0	0	0.001168	0	0
SPTA1	6708	broad.mit.edu	37	1	158623172	158623172	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A2Q8-01A-11D-A18F-08	TCGA-DJ-A2Q8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fa837b4d-55a7-4dcf-9fdf-cf9c13644df7	cf88aecb-dc11-4f6f-9072-bc153c7a62d9	g.chr1:158623172G>A	uc001fst.1	-	22	3279	c.3080C>T	c.(3079-3081)CCA>CTA	p.P1027L		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1027	SH3.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					ATAGACAGCTGGGACAATGCC	0.552000													6	76	---	---	---	---	0	0	0.001168	0	0
MYBPC3	4607	broad.mit.edu	37	11	47369997	47369997	+	Silent	SNP	G	A	A			TCGA-DJ-A2Q8-01A-11D-A18F-08	TCGA-DJ-A2Q8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fa837b4d-55a7-4dcf-9fdf-cf9c13644df7	cf88aecb-dc11-4f6f-9072-bc153c7a62d9	g.chr11:47369997G>A	uc001nfa.3	-	6	805	c.750C>T	c.(748-750)TCC>TCT	p.S250S		NM_000256	NP_000247	Q14896	MYPC3_HUMAN	myosin binding protein C, cardiac	250	Ig-like C2-type 1.				cardiac muscle contraction|cell adhesion|muscle filament sliding|regulation of muscle filament sliding|regulation of striated muscle contraction|ventricular cardiac muscle tissue morphogenesis	C zone|cytosol|striated muscle myosin thick filament	actin binding|ATPase activator activity|metal ion binding|myosin heavy chain binding|structural constituent of muscle|titin binding			ovary(2)|central_nervous_system(1)	3				Lung(87;0.176)		GATTGAAGTTGGAGCAGTCAA	0.577000													7	18	---	---	---	---	0	0	0.001984	0	0
CREBBP	1387	broad.mit.edu	37	16	3828107	3828107	+	Nonsense_Mutation	SNP	A	T	T			TCGA-DJ-A2Q8-01A-11D-A18F-08	TCGA-DJ-A2Q8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fa837b4d-55a7-4dcf-9fdf-cf9c13644df7	cf88aecb-dc11-4f6f-9072-bc153c7a62d9	g.chr16:3828107A>T	uc002cvv.2	-	10	2222	c.2018T>A	c.(2017-2019)TTA>TAA	p.L673*	CREBBP_uc002cvw.2_Nonsense_Mutation_p.L635*	NM_004380	NP_004371	Q92793	CBP_HUMAN	CREB binding protein isoform a	673					cellular lipid metabolic process|homeostatic process|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|protein complex assembly|response to hypoxia	cytoplasm|nuclear body	histone acetyltransferase activity|MyoD binding|p53 binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(97)|ovary(14)|lung(6)|skin(6)|breast(2)|NS(1)|pancreas(1)	127		Ovarian(90;0.0266)		OV - Ovarian serous cystadenocarcinoma(1;3.54e-05)		TTGTTTATGTAAACGCGACCT	0.433000			T|N|F|Mis|O	MLL|MORF|RUNXBP2	ALL|AML|DLBCL|B-NHL 		Rubinstein-Taybi syndrome		Rubinstein-Taybi_syndrome				7	152	---	---	---	---	0	0	0.006214	0	0
ATP2C2	9914	broad.mit.edu	37	16	84495624	84495624	+	Missense_Mutation	SNP	A	G	G			TCGA-DJ-A2Q8-01A-11D-A18F-08	TCGA-DJ-A2Q8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fa837b4d-55a7-4dcf-9fdf-cf9c13644df7	cf88aecb-dc11-4f6f-9072-bc153c7a62d9	g.chr16:84495624A>G	uc002fhx.2	+	26	2700	c.2611A>G	c.(2611-2613)AGG>GGG	p.R871G	ATP2C2_uc010chj.2_Missense_Mutation_p.R900G|ATP2C2_uc002fhy.2_Missense_Mutation_p.R888G|ATP2C2_uc002fhz.2_Missense_Mutation_p.R720G|ATP2C2_uc002fia.2_Missense_Mutation_p.R182G	NM_014861	NP_055676	O75185	AT2C2_HUMAN	ATPase, Ca++ transporting, type 2C, member 2	871	Cytoplasmic (Potential).				ATP biosynthetic process	Golgi membrane|integral to membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			breast(1)|central_nervous_system(1)	2						CGGCTTTCTCAGGAACCACAT	0.587000													3	132	---	---	---	---	0	0	0.000248	0	0
PIGZ	80235	broad.mit.edu	37	3	196675177	196675177	+	Silent	SNP	C	G	G			TCGA-DJ-A2Q8-01A-11D-A18F-08	TCGA-DJ-A2Q8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fa837b4d-55a7-4dcf-9fdf-cf9c13644df7	cf88aecb-dc11-4f6f-9072-bc153c7a62d9	g.chr3:196675177C>G	uc003fxh.2	-	3	738	c.591G>C	c.(589-591)ACG>ACC	p.T197T		NM_025163	NP_079439	Q86VD9	PIGZ_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	197	Helical; (Potential).				GPI anchor biosynthetic process	integral to membrane|intrinsic to endoplasmic reticulum membrane	alpha-1,2-mannosyltransferase activity			ovary(3)	3	all_cancers(143;1.05e-08)|Ovarian(172;0.0634)|Breast(254;0.0838)		Epithelial(36;4.29e-24)|all cancers(36;2.79e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.03e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00603)		TAGGGCCCCACGTTACATGGG	0.607000													3	63	---	---	---	---	0	0	0.000248	0	0
NDST4	64579	broad.mit.edu	37	4	115898369	115898369	+	Missense_Mutation	SNP	C	T	T			TCGA-DJ-A2Q8-01A-11D-A18F-08	TCGA-DJ-A2Q8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fa837b4d-55a7-4dcf-9fdf-cf9c13644df7	cf88aecb-dc11-4f6f-9072-bc153c7a62d9	g.chr4:115898369C>T	uc003ibu.2	-	3	1719	c.1040G>A	c.(1039-1041)GGA>GAA	p.G347E	NDST4_uc010imw.2_Intron	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	347	Lumenal (Potential).|Heparan sulfate N-deacetylase 4.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		CCCTGAAAATCCAAGGTTGAA	0.323000													4	100	---	---	---	---	0	0	0.000248	0	0
ACOT12	134526	broad.mit.edu	37	5	80626733	80626733	+	Missense_Mutation	SNP	G	A	A	rs80124231	by1000genomes	TCGA-DJ-A2Q8-01A-11D-A18F-08	TCGA-DJ-A2Q8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fa837b4d-55a7-4dcf-9fdf-cf9c13644df7	cf88aecb-dc11-4f6f-9072-bc153c7a62d9	g.chr5:80626733G>A	uc003khl.3	-	14	1473	c.1418C>T	c.(1417-1419)TCG>TTG	p.S473L	RNU5E_uc011cto.1_Intron	NM_130767	NP_570123	Q8WYK0	ACO12_HUMAN	acyl-CoA thioesterase 12	473	START.				acyl-CoA metabolic process|fatty acid metabolic process	cytosol	acetyl-CoA hydrolase activity|carboxylesterase activity			ovary(1)|kidney(1)	2		Lung NSC(167;0.0176)|all_lung(232;0.0205)|Ovarian(174;0.135)		OV - Ovarian serous cystadenocarcinoma(54;1.37e-45)|Epithelial(54;1.25e-39)|all cancers(79;5.01e-34)		CAAAATGACCGACTTCACTGC	0.398000													15	17	---	---	---	---	0	0	0.003163	0	0
ZNF608	57507	broad.mit.edu	37	5	124079864	124079864	+	Silent	SNP	T	C	C			TCGA-DJ-A2Q8-01A-11D-A18F-08	TCGA-DJ-A2Q8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fa837b4d-55a7-4dcf-9fdf-cf9c13644df7	cf88aecb-dc11-4f6f-9072-bc153c7a62d9	g.chr5:124079864T>C	uc003ktq.1	-	1	942	c.819A>G	c.(817-819)TCA>TCG	p.S273S	ZNF608_uc003ktr.1_RNA|ZNF608_uc003kts.1_Silent_p.S273S|ZNF608_uc003ktt.1_Silent_p.S273S	NM_020747	NP_065798	Q9ULD9	ZN608_HUMAN	zinc finger protein 608	273						intracellular	zinc ion binding			skin(3)|ovary(2)|lung(1)	6		all_cancers(142;0.186)|Prostate(80;0.081)	KIRC - Kidney renal clear cell carcinoma(527;0.159)|Kidney(363;0.221)	OV - Ovarian serous cystadenocarcinoma(64;0.00126)|Epithelial(69;0.00238)|all cancers(49;0.00783)		CCATGAGCCCTGAATCCGGGG	0.562000													4	212	---	---	---	---	0	0	0.000248	0	0
PCDHA4	56144	broad.mit.edu	37	5	140188029	140188029	+	Silent	SNP	A	G	G			TCGA-DJ-A2Q8-01A-11D-A18F-08	TCGA-DJ-A2Q8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fa837b4d-55a7-4dcf-9fdf-cf9c13644df7	cf88aecb-dc11-4f6f-9072-bc153c7a62d9	g.chr5:140188029A>G	uc003lhi.2	+	1	1358	c.1257A>G	c.(1255-1257)TCA>TCG	p.S419S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Silent_p.S419S|PCDHA4_uc011daa.1_Silent_p.S419S	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	419	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGAGCGTGTCAGCCTATGAGC	0.617000													4	173	---	---	---	---	0	0	0.000602	0	0
GRM1	2911	broad.mit.edu	37	6	146480652	146480652	+	Missense_Mutation	SNP	T	G	G			TCGA-DJ-A2Q8-01A-11D-A18F-08	TCGA-DJ-A2Q8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fa837b4d-55a7-4dcf-9fdf-cf9c13644df7	cf88aecb-dc11-4f6f-9072-bc153c7a62d9	g.chr6:146480652T>G	uc010khw.1	+	3	1339	c.869T>G	c.(868-870)TTC>TGC	p.F290C	GRM1_uc010khu.1_Missense_Mutation_p.F290C|GRM1_uc010khv.1_Missense_Mutation_p.F290C|GRM1_uc003qll.2_Missense_Mutation_p.F290C|GRM1_uc011edz.1_Missense_Mutation_p.F290C|GRM1_uc011eea.1_Missense_Mutation_p.F290C	NM_000838	NP_000829	Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1 isoform alpha	290	Extracellular (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(8)|ovary(4)|central_nervous_system(3)|large_intestine(2)|breast(2)	19		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	GTGGTCTGCTTCTGTGAAGGC	0.522000													3	86	---	---	---	---	0	0	0.004672	0	0
VCP	7415	broad.mit.edu	37	9	35065309	35065309	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A2Q8-01A-11D-A18F-08	TCGA-DJ-A2Q8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fa837b4d-55a7-4dcf-9fdf-cf9c13644df7	cf88aecb-dc11-4f6f-9072-bc153c7a62d9	g.chr9:35065309G>A	uc003zvy.2	-	5	904	c.515C>T	c.(514-516)CCT>CTT	p.P172L	VCP_uc003zvz.2_RNA|VCP_uc010mkh.1_5'UTR|VCP_uc010mki.1_Missense_Mutation_p.P127L	NM_007126	NP_009057	P55072	TERA_HUMAN	valosin-containing protein	172					activation of caspase activity|double-strand break repair|endoplasmic reticulum unfolded protein response|ER-associated protein catabolic process|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination|retrograde protein transport, ER to cytosol	cytosol|endoplasmic reticulum|microsome|nucleus|proteasome complex	ATP binding|ATPase activity|lipid binding|polyubiquitin binding|protein domain specific binding|protein phosphatase binding			upper_aerodigestive_tract(1)	1			LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			AATGCAATAAGGGCTAGGATC	0.478000													18	40	---	---	---	---	0	0	0.004990	0	0
SETX	23064	broad.mit.edu	37	9	135140069	135140069	+	Missense_Mutation	SNP	G	C	C			TCGA-DJ-A2Q8-01A-11D-A18F-08	TCGA-DJ-A2Q8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fa837b4d-55a7-4dcf-9fdf-cf9c13644df7	cf88aecb-dc11-4f6f-9072-bc153c7a62d9	g.chr9:135140069G>C	uc004cbk.2	-	26	7774	c.7591C>G	c.(7591-7593)CCT>GCT	p.P2531A	SETX_uc004cbj.2_Missense_Mutation_p.P2179A|SETX_uc010mzt.2_Missense_Mutation_p.P2117A	NM_015046	NP_055861	Q7Z333	SETX_HUMAN	senataxin	2531					cell death|double-strand break repair|RNA processing	cytoplasm|nucleolus|nucleoplasm	ATP binding|DNA helicase activity			ovary(2)|skin(1)	3		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;6.82e-06)|Epithelial(140;0.000171)		TCATGAACAGGAGGTCTTTCA	0.488000													3	109	---	---	---	---	0	0	0.004672	0	0
PCDH11X	27328	broad.mit.edu	37	X	91873707	91873707	+	Missense_Mutation	SNP	A	G	G			TCGA-DJ-A2Q8-01A-11D-A18F-08	TCGA-DJ-A2Q8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fa837b4d-55a7-4dcf-9fdf-cf9c13644df7	cf88aecb-dc11-4f6f-9072-bc153c7a62d9	g.chrX:91873707A>G	uc004efk.1	+	7	4657	c.3812A>G	c.(3811-3813)CAG>CGG	p.Q1271R	PCDH11X_uc004efl.1_Missense_Mutation_p.Q1261R|PCDH11X_uc004efo.1_Missense_Mutation_p.Q1234R|PCDH11X_uc010nmv.1_3'UTR|PCDH11X_uc004efm.1_Missense_Mutation_p.Q1263R|PCDH11X_uc004efn.1_Missense_Mutation_p.Q1253R	NM_032968	NP_116750	Q9BZA7	PC11X_HUMAN	protocadherin 11 X-linked isoform c	1271	Cytoplasmic (Potential).				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			large_intestine(2)	2						CATCGTAGTCAGGCCCAATCA	0.547000													4	258	---	---	---	---	0	0	0.000248	0	0
Unknown	0	broad.mit.edu	37	10	42391516	42391516	+	IGR	DEL	A	-	-	rs79661969		TCGA-DJ-A2Q8-01A-11D-A18F-08	TCGA-DJ-A2Q8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fa837b4d-55a7-4dcf-9fdf-cf9c13644df7	cf88aecb-dc11-4f6f-9072-bc153c7a62d9	g.chr10:42391516delA								None (None upstream) : LOC441666 (435799 downstream)																							tcgaatggccacgaatggaat	0.000													2	4	---	---	---	---					
EMG1	10436	broad.mit.edu	37	12	7080210	7080211	+	Frame_Shift_Ins	INS	-	G	G	rs141646579	by1000genomes	TCGA-DJ-A2Q8-01A-11D-A18F-08	TCGA-DJ-A2Q8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fa837b4d-55a7-4dcf-9fdf-cf9c13644df7	cf88aecb-dc11-4f6f-9072-bc153c7a62d9	g.chr12:7080210_7080211insG	uc001qsh.3	+	1	267_268	c.124_125insG	c.(124-126)AGGfs	p.R42fs	PHB2_uc001qsd.2_5'Flank|PHB2_uc010sft.1_5'Flank|PHB2_uc010sfu.1_5'Flank|EMG1_uc009zfo.2_RNA|EMG1_uc010sfv.1_RNA	NM_006331	NP_006322	Q92979	NEP1_HUMAN	ribosome biogenesis protein NEP1	42					ribosomal small subunit biogenesis	cytoplasm|nucleolus	rRNA (pseudouridine) methyltransferase activity|rRNA binding				0						CGGAGGCCGTAGTTTATTGTGG	0.569													6	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	13	55014797	55014797	+	IGR	DEL	T	-	-			TCGA-DJ-A2Q8-01A-11D-A18F-08	TCGA-DJ-A2Q8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fa837b4d-55a7-4dcf-9fdf-cf9c13644df7	cf88aecb-dc11-4f6f-9072-bc153c7a62d9	g.chr13:55014797delT								MIR1297 (128614 upstream) : None (None downstream)																							ttcaggttcctttTTTTTTTT	0.189													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	880161	880168	+	IGR	DEL	GCTGGGCT	-	-	rs11275697		TCGA-DJ-A2Q8-01A-11D-A18F-08	TCGA-DJ-A2Q8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fa837b4d-55a7-4dcf-9fdf-cf9c13644df7	cf88aecb-dc11-4f6f-9072-bc153c7a62d9	g.chr16:880161_880168delGCTGGGCT								PRR25 (16301 upstream) : LMF1 (23467 downstream)																							GTGAGTGGACgctgggctgctgggctgc	0.481													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	33893887	33893887	+	IGR	DEL	A	-	-			TCGA-DJ-A2Q8-01A-11D-A18F-08	TCGA-DJ-A2Q8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fa837b4d-55a7-4dcf-9fdf-cf9c13644df7	cf88aecb-dc11-4f6f-9072-bc153c7a62d9	g.chr17:33893887delA								SLFN14 (8777 upstream) : SNORD7 (6789 downstream)																							CTTTCATTTCAAAAAAAAAAA	0.383													3	3	---	---	---	---					
PRR22	163154	broad.mit.edu	37	19	5783841	5783841	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DJ-A2Q8-01A-11D-A18F-08	TCGA-DJ-A2Q8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fa837b4d-55a7-4dcf-9fdf-cf9c13644df7	cf88aecb-dc11-4f6f-9072-bc153c7a62d9	g.chr19:5783841delC	uc002mdb.1	-	1	770	c.411delG	c.(409-411)GGGfs	p.G137fs	PRR22_uc010xiv.1_Frame_Shift_Del_p.G139fs	NM_153359	NP_699190	Q8IZ63	PRR22_HUMAN	proline rich 22 isoform 2	137	Pro-rich.										0						GAAACTGGGGCCCCCCGGGTG	0.721													2	4	---	---	---	---					
ADAM33	80332	broad.mit.edu	37	20	3652627	3652627	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DJ-A2Q8-01A-11D-A18F-08	TCGA-DJ-A2Q8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fa837b4d-55a7-4dcf-9fdf-cf9c13644df7	cf88aecb-dc11-4f6f-9072-bc153c7a62d9	g.chr20:3652627delG	uc002wit.2	-	15	1690	c.1603delC	c.(1603-1605)CACfs	p.H535fs	ADAM33_uc002wiq.1_5'Flank|ADAM33_uc002wir.1_Frame_Shift_Del_p.H535fs|ADAM33_uc002wis.2_Frame_Shift_Del_p.H57fs|ADAM33_uc002wiu.2_Frame_Shift_Del_p.H535fs|uc002wiv.1_5'Flank|ADAM33_uc002wiw.1_Intron|ADAM33_uc010gba.1_Intron|ADAM33_uc010gbb.1_Intron	NM_025220	NP_079496	Q9BZ11	ADA33_HUMAN	ADAM metallopeptidase domain 33 isoform alpha	535	Extracellular (Potential).|Cys-rich.				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			large_intestine(2)|ovary(1)|skin(1)	4						GGAGCTGGGTGGGAGCCTGAG	0.652													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	2434593	2434594	+	IGR	DEL	GA	-	-	rs75442696		TCGA-DJ-A2Q8-01A-11D-A18F-08	TCGA-DJ-A2Q8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fa837b4d-55a7-4dcf-9fdf-cf9c13644df7	cf88aecb-dc11-4f6f-9072-bc153c7a62d9	g.chr7:2434593_2434594delGA								EIF3B (14218 upstream) : CHST12 (8629 downstream)																							ACCCttttttgatttttttttt	0.292													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	98910246	98910246	+	IGR	DEL	A	-	-	rs139074595		TCGA-DJ-A2Q8-01A-11D-A18F-08	TCGA-DJ-A2Q8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fa837b4d-55a7-4dcf-9fdf-cf9c13644df7	cf88aecb-dc11-4f6f-9072-bc153c7a62d9	g.chr9:98910246delA								NCRNA00092 (126209 upstream) : HSD17B3 (87343 downstream)																							CCATCTCCTGAAAAAAAAAAA	0.313													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	127957480	127957481	+	IGR	INS	-	A	A	rs79479616		TCGA-DJ-A2Q8-01A-11D-A18F-08	TCGA-DJ-A2Q8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fa837b4d-55a7-4dcf-9fdf-cf9c13644df7	cf88aecb-dc11-4f6f-9072-bc153c7a62d9	g.chr9:127957480_127957481insA								PPP6C (5262 upstream) : RABEPK (5336 downstream)																							gcgtctcaaataaaaaaaaaaa	0.228													3	3	---	---	---	---					
