Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CROCCL1	84809	broad.mit.edu	37	1	16946434	16946434	+	RNA	SNP	C	T	T	rs367060		TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr1:16946434C>T	uc010ocf.1	-	3		c.464G>A			CROCCL1_uc009vov.1_RNA|CROCCL1_uc001aze.2_RNA|CROCCL1_uc001azf.2_RNA					Homo sapiens mRNA for FLJ00313 protein.												0						CTCAGCCTTCCGCCGGGCCAG	0.672000													4	32	---	---	---	---	0	0	0.014758	0	0
CDC7	8317	broad.mit.edu	37	1	91967356	91967356	+	Nonsense_Mutation	SNP	T	A	A			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr1:91967356T>A	uc001doe.2	+	2	248	c.83T>A	c.(82-84)TTA>TAA	p.L28*	CDC7_uc001dof.2_Nonsense_Mutation_p.L28*|CDC7_uc010osw.1_Nonsense_Mutation_p.L28*|CDC7_uc009wdc.2_Nonsense_Mutation_p.L28*	NM_003503	NP_003494	O00311	CDC7_HUMAN	cell division cycle 7	28					cell cycle checkpoint|cell division|DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|positive regulation of cell proliferation|regulation of S phase	cytoplasm|nucleoplasm	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			stomach(2)|large_intestine(1)|ovary(1)|central_nervous_system(1)	5		all_lung(203;0.0165)|Lung NSC(277;0.0562)		all cancers(265;0.00108)|Epithelial(280;0.0184)|KIRC - Kidney renal clear cell carcinoma(1967;0.124)		GAAGGCTCTTTAAAAAAAAAC	0.403000													3	77	---	---	---	---	0	0	0.009096	0	0
ASH1L	55870	broad.mit.edu	37	1	155317613	155317613	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr1:155317613G>A	uc009wqq.2	-	20	8132	c.7652C>T	c.(7651-7653)TCA>TTA	p.S2551L	RAG1AP1_uc010pey.1_Intron|ASH1L_uc001fkt.2_Missense_Mutation_p.S2546L|MIR555_hsa-mir-555|MI0003561_5'Flank	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	2551					cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			AATCTGGGCTGATGCCTCATG	0.483000													3	150	---	---	---	---	0	0	0.014758	0	0
CSGALNACT2	55454	broad.mit.edu	37	10	43654238	43654238	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr10:43654238G>A	uc001jan.2	+	3	1072	c.737G>A	c.(736-738)AGA>AAA	p.R246K	CSGALNACT2_uc001jam.1_Missense_Mutation_p.R246K	NM_018590	NP_061060	Q8N6G5	CGAT2_HUMAN	chondroitin sulfate	246	Lumenal (Potential).				chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|dermatan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process	Golgi cisterna membrane|integral to Golgi membrane	glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding			ovary(1)	1						ACGGAATATAGACATGTGACC	0.393000													19	75	---	---	---	---	0	0	0.008871	0	0
HHEX	3087	broad.mit.edu	37	10	94452181	94452181	+	Missense_Mutation	SNP	G	T	T			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr10:94452181G>T	uc001kid.2	+	2	481	c.418G>T	c.(418-420)GGC>TGC	p.G140C		NM_002729	NP_002720	Q03014	HHEX_HUMAN	hematopoietically expressed homeobox	140	Homeobox.				anterior/posterior pattern formation|B cell differentiation|cell cycle|DNA conformation change|negative regulation of angiogenesis|negative regulation of transcription by competitive promoter binding|negative regulation of transcription from RNA polymerase II promoter|negative regulation of vascular endothelial growth factor receptor signaling pathway|poly(A)+ mRNA export from nucleus|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|protein localization to nucleus|Wnt receptor signaling pathway	cytoplasm|nucleus|protein-DNA complex	DNA bending activity|eukaryotic initiation factor 4E binding|protein homodimerization activity|repressing transcription factor binding|sequence-specific DNA binding|TBP-class protein binding|transcription regulatory region DNA binding			ovary(1)	1						AAGGAAAGGCGGCCAGGTGAG	0.587000													20	59	---	---	---	---	1.96895e-08	2.07833e-08	0.016522	1	0
HPS1	3257	broad.mit.edu	37	10	100189379	100189379	+	Silent	SNP	G	A	A			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr10:100189379G>A	uc010qpf.1	-	10	1134	c.888C>T	c.(886-888)CTC>CTT	p.L296L	HPS1_uc001kpi.1_Silent_p.L296L|HPS1_uc001kpj.1_Silent_p.L203L|HPS1_uc001kpk.1_Silent_p.L176L|HPS1_uc009xwb.2_RNA|HPS1_uc010qph.1_Silent_p.L296L|HPS1_uc001kpl.2_Silent_p.L296L	NM_000195	NP_000186	Q92902	HPS1_HUMAN	Hermansky-Pudlak syndrome 1 protein isoform a	296					lysosome organization|response to stimulus|visual perception	cytoplasmic membrane-bounded vesicle|integral to plasma membrane|lysosome|membrane fraction|soluble fraction	protein dimerization activity			skin(1)	1		Colorectal(252;0.234)		Epithelial(162;3.87e-12)|all cancers(201;5.63e-10)		ACTCCTCAGGGAGGGAGAAGC	0.597000									Hermansky-Pudlak_syndrome				12	45	---	---	---	---	0	0	0.020292	0	0
HPS1	3257	broad.mit.edu	37	10	100189563	100189563	+	Silent	SNP	C	T	T			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr10:100189563C>T	uc010qpf.1	-	9	1098	c.852G>A	c.(850-852)GGG>GGA	p.G284G	HPS1_uc001kpi.1_Silent_p.G284G|HPS1_uc001kpj.1_Intron|HPS1_uc001kpk.1_Intron|HPS1_uc009xwb.2_Intron|HPS1_uc010qph.1_Silent_p.G284G|HPS1_uc001kpl.2_Silent_p.G284G	NM_000195	NP_000186	Q92902	HPS1_HUMAN	Hermansky-Pudlak syndrome 1 protein isoform a	284					lysosome organization|response to stimulus|visual perception	cytoplasmic membrane-bounded vesicle|integral to plasma membrane|lysosome|membrane fraction|soluble fraction	protein dimerization activity			skin(1)	1		Colorectal(252;0.234)		Epithelial(162;3.87e-12)|all cancers(201;5.63e-10)		CTGCAGAGCTCCCCCCAGTTG	0.692000									Hermansky-Pudlak_syndrome				38	192	---	---	---	---	0	0	0.014410	0	0
C10orf90	118611	broad.mit.edu	37	10	128193324	128193324	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr10:128193324G>A	uc001ljq.2	-	3	566	c.445C>T	c.(445-447)CCC>TCC	p.P149S	C10orf90_uc001ljp.2_Missense_Mutation_p.P102S|C10orf90_uc010qum.1_Missense_Mutation_p.P246S|C10orf90_uc009yao.2_Missense_Mutation_p.P246S|C10orf90_uc001ljs.1_Missense_Mutation_p.P102S	NM_001004298	NP_001004298	Q96M02	CJ090_HUMAN	hypothetical protein LOC118611	149										ovary(1)|skin(1)	2		all_epithelial(44;4.51e-05)|all_lung(145;0.0068)|Lung NSC(174;0.0105)|Colorectal(57;0.0848)|all_neural(114;0.0936)|Breast(234;0.203)		COAD - Colon adenocarcinoma(40;0.0442)|Colorectal(40;0.0479)		CGGGCTGGGGGGCCCACGCGT	0.697000											OREG0020616	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	70	---	---	---	---	0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	11	89774252	89774252	+	Missense_Mutation	SNP	G	A	A	rs145791878	by1000genomes	TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr11:89774252G>A	uc010rua.1	+	7	1016	c.893G>A	c.(892-894)AGT>AAT	p.S298N		NM_020358	NP_065091			ring finger protein 18																		GAAGCCAACAGTGATATCTTT	0.323000													4	26	---	---	---	---	0	0	0.009096	0	0
GCN1L1	10985	broad.mit.edu	37	12	120568522	120568522	+	Silent	SNP	G	C	C			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr12:120568522G>C	uc001txo.2	-	56	7612	c.7599C>G	c.(7597-7599)GGC>GGG	p.G2533G		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	2533					regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TCATGAGAAAGCCCATGCCCC	0.612000													23	95	---	---	---	---	0	0	0.006320	0	0
ADAM6	8755	broad.mit.edu	37	14	106714626	106714626	+	RNA	SNP	T	G	G			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr14:106714626T>G	uc010tyt.1	-	645		c.18979A>C								Parts of antibodies, mostly variable regions.												0						CCCCAGGCTGTACCAAGCCTC	0.582000													3	120	---	---	---	---	0	0	0.009096	0	0
NLRC5	84166	broad.mit.edu	37	16	57115523	57115523	+	Splice_Site	SNP	G	A	A			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr16:57115523G>A	uc002ekk.1	+	48	5714	c.5489_splice	c.e48+1	p.R1830_splice	NLRC5_uc010ccr.1_Splice_Site|NLRC5_uc010ccs.1_Splice_Site|NLRC5_uc002eko.1_Splice_Site|NLRC5_uc002ekq.1_Splice_Site_p.R372_splice|NLRC5_uc002ekr.1_Splice_Site_p.R717_splice	NM_032206	NP_115582	Q86WI3	NLRC5_HUMAN	nucleotide-binding oligomerization domains 27						defense response to virus|innate immune response|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|negative regulation of type I interferon-mediated signaling pathway|positive regulation of interferon-gamma-mediated signaling pathway|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|regulation of kinase activity	cytosol|nucleus	ATP binding|protein binding|RNA polymerase II core promoter sequence-specific DNA binding			ovary(4)|skin(2)|breast(1)	7		all_neural(199;0.225)				AAGTCATCCGGTAACAGAGGC	0.627000													4	132	---	---	---	---	0	0	0.009096	0	0
CX3CL1	6376	broad.mit.edu	37	16	57416149	57416149	+	Silent	SNP	C	T	T			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr16:57416149C>T	uc002eli.2	+	3	466	c.399C>T	c.(397-399)GGC>GGT	p.G133G		NM_002996	NP_002987	P78423	X3CL1_HUMAN	chemokine (C-X3-C motif) ligand 1 precursor	133	Mucin-like stalk.|Extracellular (Potential).				cell adhesion|cytokine-mediated signaling pathway|defense response|immune response|leukocyte adhesive activation|positive regulation of calcium-independent cell-cell adhesion|positive regulation of inflammatory response	cell surface|extracellular space|integral to membrane|plasma membrane	chemokine activity				0						AAGCCACAGGCGAAAGCAGTA	0.667000													14	37	---	---	---	---	0	0	0.020292	0	0
RYR1	6261	broad.mit.edu	37	19	38976750	38976750	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr19:38976750G>A	uc002oit.2	+	34	5585	c.5455G>A	c.(5455-5457)GTG>ATG	p.V1819M	RYR1_uc002oiu.2_Missense_Mutation_p.V1819M	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	1819	Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GGGGGAGGCGGTGCGCGACGG	0.706000													3	116	---	---	---	---	0	0	0.004672	0	0
ZNF83	55769	broad.mit.edu	37	19	53116885	53116885	+	Silent	SNP	A	G	G	rs7247257		TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr19:53116885A>G	uc002pzu.3	-	2	2177	c.933T>C	c.(931-933)CAT>CAC	p.H311H	ZNF83_uc002pzv.3_Silent_p.H311H|ZNF83_uc010eps.2_Silent_p.H283H|ZNF83_uc010ept.2_Silent_p.H311H|ZNF83_uc010epu.2_Silent_p.H311H|ZNF83_uc010epv.2_Silent_p.H311H|ZNF83_uc010epw.2_Silent_p.H311H|ZNF83_uc010epx.2_Silent_p.H283H|ZNF83_uc010epy.2_Silent_p.H311H|ZNF83_uc010epz.2_Silent_p.H283H	NM_018300	NP_060770	P51522	ZNF83_HUMAN	zinc finger protein 83 isoform a	311	C2H2-type 8.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(262;0.00841)|GBM - Glioblastoma multiforme(134;0.0244)		TCTCTCCAGTATGAATTCTCC	0.418000													4	172	---	---	---	---	0	0	0.001984	0	0
ZNF845	91664	broad.mit.edu	37	19	53855364	53855365	+	Missense_Mutation	DNP	CA	TG	TG			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr19:53855364_53855365CA>TG	uc010ydv.1	+	4	1553_1554	c.1436_1437CA>TG	c.(1435-1437)ACA>ATG	p.T479M	ZNF845_uc010ydw.1_Missense_Mutation_p.T479M	NM_138374	NP_612383	Q96IR2	ZN845_HUMAN	zinc finger protein 845	479	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TTCAGTCAGACATCATCCCTTG	0.381000													5	123	---	---	---	---	0	0	0.004672	0	0
C21orf99	149992	broad.mit.edu	37	21	14439208	14439208	+	RNA	SNP	A	G	G			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr21:14439208A>G	uc002yja.3	+	10		c.2726A>G				NR_026916				Homo sapiens C21orf99 protein (C21orf99) mRNA, complete cds.												0						AAGAGAAGAAATGCCAATATA	0.299000													2	15	---	---	---	---	0	0	0.004672	0	0
SDHAP2	727956	broad.mit.edu	37	3	195410640	195410640	+	Silent	SNP	T	C	C	rs6583273	by1000genomes	TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr3:195410640T>C	uc003fuw.2	+	13	1731	c.537T>C	c.(535-537)TAT>TAC	p.Y179Y	SDHAP2_uc003fuv.2_RNA					SubName: Full=cDNA FLJ16373 fis, clone THYMU3000269, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial (EC 1.3.5.1);												0						TTGATGAGTATGATCACTCCA	0.468000													2	13	---	---	---	---	0	0	0.014758	0	0
STK32B	55351	broad.mit.edu	37	4	5500727	5500727	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr4:5500727G>A	uc003gih.1	+	12	1226	c.1162G>A	c.(1162-1164)GGA>AGA	p.G388R	STK32B_uc010ida.1_Missense_Mutation_p.G341R	NM_018401	NP_060871	Q9NY57	ST32B_HUMAN	serine/threonine kinase 32B	388							ATP binding|metal ion binding|protein serine/threonine kinase activity			breast(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5						CAGCCGAGGGGGAGGCCAGGC	0.627000													3	55	---	---	---	---	0	0	0.004672	0	0
ASNS	440	broad.mit.edu	37	7	97488559	97488559	+	Silent	SNP	G	A	A			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr7:97488559G>A	uc003uot.3	-	5	1145	c.639C>T	c.(637-639)CAC>CAT	p.H213H	ASNS_uc011kin.1_Silent_p.H130H|ASNS_uc003uou.3_Silent_p.H213H|ASNS_uc003uov.3_Silent_p.H213H|ASNS_uc011kio.1_Silent_p.H192H|ASNS_uc003uow.3_Silent_p.H192H|ASNS_uc003uox.3_Silent_p.H130H	NM_133436	NP_597680	P08243	ASNS_HUMAN	asparagine synthetase	213	Asparagine synthetase.				cellular response to glucose starvation|glutamine metabolic process|negative regulation of apoptosis|positive regulation of mitotic cell cycle	cytosol|soluble fraction	asparagine synthase (glutamine-hydrolyzing) activity|ATP binding			ovary(1)	1	all_cancers(62;6.64e-09)|all_epithelial(64;1.58e-09)|Esophageal squamous(72;0.00448)|Lung NSC(181;0.0342)|all_lung(186;0.0369)				Adenosine triphosphate(DB00171)|L-Asparagine(DB00174)|L-Aspartic Acid(DB00128)|L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	CATAGAGGGCGTGCAGGGGTA	0.433000													3	71	---	---	---	---	0	0	0.014758	0	0
HR	55806	broad.mit.edu	37	8	21984718	21984718	+	Missense_Mutation	SNP	T	C	C			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr8:21984718T>C	uc003xas.2	-	3	1902	c.1237A>G	c.(1237-1239)AGG>GGG	p.R413G	HR_uc003xat.2_Missense_Mutation_p.R413G	NM_005144	NP_005135	O43593	HAIR_HUMAN	hairless protein isoform a	413							DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|ovary(1)	2		Breast(100;0.000162)|Acute lymphoblastic leukemia(644;0.0775)|Prostate(55;0.116)		KIRC - Kidney renal clear cell carcinoma(542;1.19e-05)|BRCA - Breast invasive adenocarcinoma(99;3.56e-05)|Colorectal(74;0.00191)|COAD - Colon adenocarcinoma(73;0.0615)|READ - Rectum adenocarcinoma(644;0.1)		CTGCCTGCCCTTTTGAGGGCC	0.662000													3	101	---	---	---	---	0	0	0.004672	0	0
SLC45A4	57210	broad.mit.edu	37	8	142231689	142231689	+	Silent	SNP	G	A	A			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr8:142231689G>A	uc003ywd.1	-	2	572	c.264C>T	c.(262-264)AAC>AAT	p.N88N	SLC45A4_uc003ywc.1_Silent_p.N88N|SLC45A4_uc010meq.1_Silent_p.N86N	NM_001080431	NP_001073900	Q5BKX6	S45A4_HUMAN	solute carrier family 45, member 4	139	Helical; (Potential).				transport	integral to membrane				ovary(2)	2	all_cancers(97;1.52e-15)|all_epithelial(106;2.92e-14)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			TGGCAGAGCCGTTAAGGAAAA	0.612000													3	44	---	---	---	---	0	0	0.014758	0	0
Unknown	0	broad.mit.edu	37	1	143391935	143391936	+	IGR	INS	-	TG	TG			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr1:143391935_143391936insTG								None (None upstream) : LOC100286793 (255703 downstream)																							ATATATATATATAAAGAGATTG	0.252													4	6	---	---	---	---					
LOC200030	200030	broad.mit.edu	37	1	148349431	148349432	+	5'Flank	INS	-	G	G	rs67020224		TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr1:148349431_148349432insG	uc001eqf.2	-						LOC200030_uc001eqe.2_5'Flank|LOC200030_uc001eqg.2_5'Flank|NBPF14_uc009wkf.1_5'Flank|uc001erd.3_5'Flank|uc001erc.3_5'Flank|uc010paj.1_5'Flank|uc010pav.1_5'Flank|uc010paw.1_5'Flank	NM_017940	NP_060410	Q86T75	NBPFB_HUMAN	hypothetical protein LOC55672							cytoplasm					0						GGGCTGACACTGGGGGGCCAGA	0.559													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42396414	42396414	+	IGR	DEL	C	-	-	rs142841203		TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr10:42396414delC								None (None upstream) : LOC441666 (430901 downstream)																							gaatcgtcatcgaatgaattg	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	134670204	134670205	+	IGR	INS	-	C	C	rs55844842		TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr11:134670204_134670205insC								B3GAT1 (388392 upstream) : None (None downstream)																							GTCTCTTGGATTGCAGTGCTTT	0.644													3	4	---	---	---	---					
C16orf71	146562	broad.mit.edu	37	16	4796953	4796955	+	In_Frame_Del	DEL	GAG	-	-			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr16:4796953_4796955delGAG	uc002cxn.2	+	8	1669_1671	c.1207_1209delGAG	c.(1207-1209)GAGdel	p.E409del		NM_139170	NP_631909	Q8IYS4	CP071_HUMAN	hypothetical protein LOC146562	409										central_nervous_system(1)	1						CTCTGACAGTGAGGAGGAGGAGG	0.611													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	12681775	12681775	+	IGR	DEL	T	-	-			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr16:12681775delT								SNX29 (13630 upstream) : CPPED1 (71882 downstream)																							CCCTCCTGCCTTTTTTCTGGG	0.144													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	21408394	21408394	+	IGR	DEL	A	-	-	rs141315490		TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr17:21408394delA								KCNJ12 (85215 upstream) : C17orf51 (23178 downstream)																							AATAGGTGTTAAAAAAAAAAA	0.289													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	190175919	190175919	+	IGR	DEL	T	-	-	rs79891507		TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr2:190175919delT								COL5A2 (131314 upstream) : WDR75 (130240 downstream)																							ggccagactatttttttTTCA	0.219													4	9	---	---	---	---					
HMMR	3161	broad.mit.edu	37	5	162917425	162917426	+	Frame_Shift_Ins	INS	-	A	A			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr5:162917425_162917426insA	uc003lzf.2	+	17	2171_2172	c.1989_1990insA	c.(1987-1992)GCTAAAfs	p.A663fs	HMMR_uc003lzh.2_Frame_Shift_Ins_p.A664fs|HMMR_uc003lzg.2_Frame_Shift_Ins_p.A648fs|HMMR_uc011dem.1_Frame_Shift_Ins_p.A577fs|uc003lzi.2_Intron	NM_012484	NP_036616	O75330	HMMR_HUMAN	hyaluronan-mediated motility receptor isoform b	663_664	Hyaluronic acid-binding (Potential).					cell surface|cytoplasm	hyaluronic acid binding				0	Renal(175;0.000281)	Medulloblastoma(196;0.00853)|all_neural(177;0.0408)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0296)|OV - Ovarian serous cystadenocarcinoma(192;0.0423)|Epithelial(171;0.0848)		GTCAGCTTGCTAAAAAAAAACA	0.307													9	65	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	44084401	44084402	+	IGR	INS	-	ATCTT	ATCTT			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chr9:44084401_44084402insATCTT								FAM75A6 (453671 upstream) : FAM27C (905834 downstream)																							TAAAGACTATATATAAAAATAA	0.277													2	4	---	---	---	---					
ZNF185	7739	broad.mit.edu	37	X	152087570	152087572	+	In_Frame_Del	DEL	GAG	-	-			TCGA-DJ-A3UV-01A-11D-A22D-08	TCGA-DJ-A3UV-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0ff3818-b468-40b7-9f82-770f181a2760	e6c777eb-ece0-4023-a1b4-f6f8d0841a37	g.chrX:152087570_152087572delGAG	uc010ntv.1	+	7	512_514	c.475_477delGAG	c.(475-477)GAGdel	p.E165del	ZNF185_uc011myg.1_In_Frame_Del_p.E165del|ZNF185_uc011myh.1_In_Frame_Del_p.E165del|ZNF185_uc011myi.1_In_Frame_Del_p.E165del|ZNF185_uc011myj.1_In_Frame_Del_p.E165del|ZNF185_uc011myk.1_In_Frame_Del_p.E165del|ZNF185_uc004fgw.3_In_Frame_Del_p.E30del|ZNF185_uc004fgu.2_5'UTR|ZNF185_uc004fgv.2_5'Flank	NM_007150	NP_009081	O15231	ZN185_HUMAN	zinc finger protein 185	165	Poly-Glu.					cytoplasm|cytoskeleton|focal adhesion	zinc ion binding			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					AGGGGACACCgaggaggaggagg	0.522													9	52	---	---	---	---					
