Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PRDM16	63976	broad.mit.edu	37	1	3102815	3102815	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3CU-01A-11D-A19J-08	TCGA-EL-A3CU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	8fbab446-f05f-4385-ac05-7566aa524929	e62e18f2-a371-4ed6-99d9-7c9e705a81a7	g.chr1:3102815C>T	uc001akf.2	+	2	244	c.164C>T	c.(163-165)CCC>CTC	p.P55L	PRDM16_uc001akc.2_Missense_Mutation_p.P55L|PRDM16_uc001akd.2_Missense_Mutation_p.P55L|PRDM16_uc001ake.2_Missense_Mutation_p.P55L|PRDM16_uc009vlh.2_5'UTR	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	55					brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		TCCCCCTTCCCCACCAGCGAG	0.662000			T	EVI1	MDS|AML								24	63	---	---	---	---	0	0	0.076483	0	0
MST1P2	11209	broad.mit.edu	37	1	16975947	16975947	+	RNA	SNP	C	T	T			TCGA-EL-A3CU-01A-11D-A19J-08	TCGA-EL-A3CU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	8fbab446-f05f-4385-ac05-7566aa524929	e62e18f2-a371-4ed6-99d9-7c9e705a81a7	g.chr1:16975947C>T	uc010och.1	+	11		c.1969C>T			MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						AGAGCCAGGCCTACAGCGGGT	0.577000													4	48	---	---	---	---	0	0	0.021553	0	0
FLG2	388698	broad.mit.edu	37	1	152325310	152325310	+	Missense_Mutation	SNP	G	T	T			TCGA-EL-A3CU-01A-11D-A19J-08	TCGA-EL-A3CU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	8fbab446-f05f-4385-ac05-7566aa524929	e62e18f2-a371-4ed6-99d9-7c9e705a81a7	g.chr1:152325310G>T	uc001ezw.3	-	3	5025	c.4952C>A	c.(4951-4953)TCT>TAT	p.S1651Y	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1651	Filaggrin 6.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ACTGTGGCTAGATCTCTGTCT	0.512000													111	298	---	---	---	---	3.29639e-60	3.78115e-60	0.048971	1	0
RGS18	64407	broad.mit.edu	37	1	192150498	192150498	+	Silent	SNP	A	G	G			TCGA-EL-A3CU-01A-11D-A19J-08	TCGA-EL-A3CU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	8fbab446-f05f-4385-ac05-7566aa524929	e62e18f2-a371-4ed6-99d9-7c9e705a81a7	g.chr1:192150498A>G	uc001gsg.2	+	4	536	c.360A>G	c.(358-360)GAA>GAG	p.E120E		NM_130782	NP_570138	Q9NS28	RGS18_HUMAN	regulator of G-protein signalling 18	120	RGS.				negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)	3						TAGCCTGTGAAGATTTCAAGA	0.313000													3	35	---	---	---	---	0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	10	49313245	49313245	+	RNA	SNP	C	T	T	rs2270911		TCGA-EL-A3CU-01A-11D-A19J-08	TCGA-EL-A3CU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	8fbab446-f05f-4385-ac05-7566aa524929	e62e18f2-a371-4ed6-99d9-7c9e705a81a7	g.chr10:49313245C>T	uc009xny.1	-	3		c.471G>A								Homo sapiens cDNA, FLJ99963.																		GCAGCCTCCTCATCCTCACTG	0.488000													5	51	---	---	---	---	0	0	0.014758	0	0
PPRC1	23082	broad.mit.edu	37	10	103908243	103908243	+	Silent	SNP	C	T	T			TCGA-EL-A3CU-01A-11D-A19J-08	TCGA-EL-A3CU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	8fbab446-f05f-4385-ac05-7566aa524929	e62e18f2-a371-4ed6-99d9-7c9e705a81a7	g.chr10:103908243C>T	uc001kum.2	+	10	4554	c.4515C>T	c.(4513-4515)TCC>TCT	p.S1505S	PPRC1_uc001kun.2_Silent_p.S1385S|PPRC1_uc010qqj.1_Silent_p.S1241S|PPRC1_uc009xxa.2_RNA	NM_015062	NP_055877	Q5VV67	PPRC1_HUMAN	peroxisome proliferator-activated receptor	1505	Arg-rich.|Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.122)		Epithelial(162;4.97e-08)|all cancers(201;8.99e-07)		GCTCACGATCCCCATCCCCCC	0.443000													11	90	---	---	---	---	0	0	0.093190	0	0
C10orf137	26098	broad.mit.edu	37	10	127408456	127408456	+	Missense_Mutation	SNP	A	T	T			TCGA-EL-A3CU-01A-11D-A19J-08	TCGA-EL-A3CU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	8fbab446-f05f-4385-ac05-7566aa524929	e62e18f2-a371-4ed6-99d9-7c9e705a81a7	g.chr10:127408456A>T	uc001liq.1	+	1	373	c.80A>T	c.(79-81)CAG>CTG	p.Q27L	uc001lim.1_5'Flank|C10orf137_uc001lin.2_Missense_Mutation_p.Q27L|C10orf137_uc001lio.1_Missense_Mutation_p.Q27L|C10orf137_uc001lip.1_5'UTR	NM_015608	NP_056423	Q3B7T1	EDRF1_HUMAN	erythroid differentiation-related factor 1	27					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	binding			ovary(5)|large_intestine(3)|lung(2)	10		all_lung(145;0.0096)|Lung NSC(174;0.0145)|Colorectal(57;0.0846)|all_neural(114;0.0936)				CTCCTGTCCCAGGGAGAATCC	0.711000													12	20	---	---	---	---	0	0	0.020292	0	0
ALG10B	144245	broad.mit.edu	37	12	38714267	38714267	+	Missense_Mutation	SNP	G	T	T			TCGA-EL-A3CU-01A-11D-A19J-08	TCGA-EL-A3CU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	8fbab446-f05f-4385-ac05-7566aa524929	e62e18f2-a371-4ed6-99d9-7c9e705a81a7	g.chr12:38714267G>T	uc001rln.3	+	3	813	c.674G>T	c.(673-675)GGA>GTA	p.G225V	ALG10B_uc001rlo.3_Missense_Mutation_p.G195V|ALG10B_uc010skk.1_Missense_Mutation_p.G165V	NM_001013620	NP_001013642	Q5I7T1	AG10B_HUMAN	asparagine-linked glycosylation 10 homolog B	225	Cytoplasmic (Potential).				dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane|plasma membrane	dolichyl-phosphate-glucose-glycolipid alpha-glucosyltransferase activity			ovary(2)|skin(1)	3	Esophageal squamous(101;0.187)	Lung NSC(34;0.204)|all_lung(34;0.235)				CCTATTAAAGGACCATTTGCA	0.393000													8	138	---	---	---	---	1.12685e-05	1.22075e-05	0.047766	1	0
LOC284232	284232	broad.mit.edu	37	13	19414102	19414102	+	RNA	SNP	C	T	T			TCGA-EL-A3CU-01A-11D-A19J-08	TCGA-EL-A3CU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	8fbab446-f05f-4385-ac05-7566aa524929	e62e18f2-a371-4ed6-99d9-7c9e705a81a7	g.chr13:19414102C>T	uc010tcj.1	-	1		c.32008G>A				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						GAATTTTTACCAAAGATTGAT	0.274000													3	13	---	---	---	---	0	0	0.004672	0	0
LOC284232	284232	broad.mit.edu	37	13	19414237	19414237	+	RNA	SNP	A	T	T	rs3963827		TCGA-EL-A3CU-01A-11D-A19J-08	TCGA-EL-A3CU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	8fbab446-f05f-4385-ac05-7566aa524929	e62e18f2-a371-4ed6-99d9-7c9e705a81a7	g.chr13:19414237A>T	uc010tcj.1	-	1		c.31873T>A				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						ATTCTTCTCTATTTTTTTTGT	0.294000													3	25	---	---	---	---	0	0	0.004672	0	0
HAS3	3038	broad.mit.edu	37	16	69143315	69143315	+	Missense_Mutation	SNP	C	T	T	rs140561541	byFrequency	TCGA-EL-A3CU-01A-11D-A19J-08	TCGA-EL-A3CU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	8fbab446-f05f-4385-ac05-7566aa524929	e62e18f2-a371-4ed6-99d9-7c9e705a81a7	g.chr16:69143315C>T	uc010cfh.2	+	2	241	c.17C>T	c.(16-18)ACG>ATG	p.T6M	HAS3_uc002ewk.2_Missense_Mutation_p.T6M|HAS3_uc010vlk.1_Missense_Mutation_p.T6M|HAS3_uc002ewl.2_Missense_Mutation_p.T6M	NM_005329	NP_005320	O00219	HAS3_HUMAN	hyaluronan synthase 3 isoform a	6	Cytoplasmic (Potential).				carbohydrate metabolic process	integral to plasma membrane	hyaluronan synthase activity				0		Ovarian(137;0.101)		OV - Ovarian serous cystadenocarcinoma(108;0.0694)		GTGCAGCTGACGACAGCCCTG	0.607000													4	32	---	---	---	---	0	0	0.014758	0	0
CYB5D1	124637	broad.mit.edu	37	17	7761468	7761468	+	Silent	SNP	C	T	T			TCGA-EL-A3CU-01A-11D-A19J-08	TCGA-EL-A3CU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	8fbab446-f05f-4385-ac05-7566aa524929	e62e18f2-a371-4ed6-99d9-7c9e705a81a7	g.chr17:7761468C>T	uc002gjb.3	+	1	405	c.16C>T	c.(16-18)CTG>TTG	p.L6L	LSMD1_uc002giz.2_5'Flank|LSMD1_uc002gja.2_5'Flank|CYB5D1_uc010cnn.1_Silent_p.L6L	NM_144607	NP_653208	Q6P9G0	CB5D1_HUMAN	cytochrome b5 domain containing 1	6							heme binding			skin(1)	1		all_cancers(10;0.11)|Prostate(122;0.219)				GCGCCGGGGCCTGGTGGCTGG	0.587000													25	63	---	---	---	---	0	0	0.030593	0	0
TTN	7273	broad.mit.edu	37	2	179436988	179436988	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3CU-01A-11D-A19J-08	TCGA-EL-A3CU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	8fbab446-f05f-4385-ac05-7566aa524929	e62e18f2-a371-4ed6-99d9-7c9e705a81a7	g.chr2:179436988G>A	uc010zfg.1	-	275	66391	c.66167C>T	c.(66166-66168)ACT>ATT	p.T22056I	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.T15751I|TTN_uc010zfi.1_Missense_Mutation_p.T15684I|TTN_uc010zfj.1_Missense_Mutation_p.T15559I	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	22983							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATCCATCAAAGTTATTTTTCC	0.468000													9	30	---	---	---	---	0	0	0.047766	0	0
MICALL1	85377	broad.mit.edu	37	22	38318081	38318081	+	Silent	SNP	G	A	A			TCGA-EL-A3CU-01A-11D-A19J-08	TCGA-EL-A3CU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	8fbab446-f05f-4385-ac05-7566aa524929	e62e18f2-a371-4ed6-99d9-7c9e705a81a7	g.chr22:38318081G>A	uc003aui.2	+	6	756	c.672G>A	c.(670-672)GGG>GGA	p.G224G		NM_033386	NP_203744	Q8N3F8	MILK1_HUMAN	molecule interacting with Rab13	224	LIM zinc-binding.					cytoplasm|cytoskeleton	protein binding|zinc ion binding			breast(1)	1	Melanoma(58;0.045)					TGGGCCCGGGGACACGGTCGG	0.652000													4	40	---	---	---	---	0	0	0.009096	0	0
DGKQ	1609	broad.mit.edu	37	4	959854	959854	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EL-A3CU-01A-11D-A19J-08	TCGA-EL-A3CU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	8fbab446-f05f-4385-ac05-7566aa524929	e62e18f2-a371-4ed6-99d9-7c9e705a81a7	g.chr4:959854G>A	uc003gbw.2	-	13	1515	c.1441C>T	c.(1441-1443)CAG>TAG	p.Q481*	DGKQ_uc010ibn.2_Nonsense_Mutation_p.Q481*	NM_001347	NP_001338	P52824	DGKQ_HUMAN	diacylglycerol kinase, theta	481	Ras-associating.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|platelet activation|protein kinase C signaling cascade|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to ATP|thrombin receptor signaling pathway	cytoskeleton|cytosol|nuclear speck|plasma membrane	activating transcription factor binding|ATP binding|diacylglycerol kinase activity|kinase binding|metal ion binding|phospholipase binding			kidney(1)	1			OV - Ovarian serous cystadenocarcinoma(23;0.0158)			TGGCTCACCTGCCGCACAGAC	0.662000													5	4	---	---	---	---	0	0	0.021553	0	0
UGT2A1	10941	broad.mit.edu	37	4	70464983	70464983	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3CU-01A-11D-A19J-08	TCGA-EL-A3CU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	8fbab446-f05f-4385-ac05-7566aa524929	e62e18f2-a371-4ed6-99d9-7c9e705a81a7	g.chr4:70464983G>A	uc003hem.3	-	2	908	c.845C>T	c.(844-846)CCT>CTT	p.P282L	UGT2A1_uc011caq.1_Missense_Mutation_p.P492L|UGT2A1_uc010ihu.2_Missense_Mutation_p.P326L|UGT2A1_uc010iht.2_Missense_Mutation_p.P282L|UGT2A1_uc010ihs.2_Missense_Mutation_p.P283L	NM_006798	NP_006789	Q9Y4X1	UD2A1_HUMAN	UDP glucuronosyltransferase 2 family,	282	Extracellular (Potential).				detection of chemical stimulus|sensory perception of smell	integral to membrane	glucuronosyltransferase activity|glucuronosyltransferase activity			ovary(1)	1						AGGTTTGGCAGGTTTGCAGTG	0.348000													5	39	---	---	---	---	0	0	0.021553	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-EL-A3CU-01A-11D-A19J-08	TCGA-EL-A3CU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	8fbab446-f05f-4385-ac05-7566aa524929	e62e18f2-a371-4ed6-99d9-7c9e705a81a7	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				22	47	---	---	---	---	0	0	0.083992	0	0
SPAG11A	653423	broad.mit.edu	37	8	7718281	7718281	+	Missense_Mutation	SNP	A	G	G			TCGA-EL-A3CU-01A-11D-A19J-08	TCGA-EL-A3CU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	8fbab446-f05f-4385-ac05-7566aa524929	e62e18f2-a371-4ed6-99d9-7c9e705a81a7	g.chr8:7718281A>G	uc003wrx.2	+	3	495	c.460A>G	c.(460-462)AAT>GAT	p.N154D	SPAG11A_uc003wry.2_3'UTR|SPAG11A_uc003wrz.2_Intron|SPAG11A_uc003wsa.2_Intron|SPAG11A_uc003wsb.2_Intron	NM_001081552	NP_001075021	Q6PDA7	SG11A_HUMAN	sperm associated antigen 11A	Error:Variant_position_missing_in_Q6PDA7_after_alignment						extracellular region					0				COAD - Colon adenocarcinoma(149;0.0162)|READ - Rectum adenocarcinoma(644;0.236)		TGATCCCTGGAATAGGTGTTG	0.373000													5	51	---	---	---	---	0	0	0.014758	0	0
FGF20	26281	broad.mit.edu	37	8	16850687	16850687	+	Missense_Mutation	SNP	T	C	C			TCGA-EL-A3CU-01A-11D-A19J-08	TCGA-EL-A3CU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	8fbab446-f05f-4385-ac05-7566aa524929	e62e18f2-a371-4ed6-99d9-7c9e705a81a7	g.chr8:16850687T>C	uc003wxc.1	-	3	663	c.530A>G	c.(529-531)GAT>GGT	p.D177G	FGF20_uc010lsv.1_RNA|FGF20_uc010lsw.1_3'UTR	NM_019851	NP_062825	Q9NP95	FGF20_HUMAN	fibroblast growth factor 20	177					cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway	extracellular region|soluble fraction	growth factor activity			lung(1)	1				Colorectal(111;0.0511)|COAD - Colon adenocarcinoma(73;0.207)		CCTGGCGCCATCTCTTGGAGT	0.428000													39	91	---	---	---	---	0	0	0.098360	0	0
ZC3H3	23144	broad.mit.edu	37	8	144548018	144548018	+	Missense_Mutation	SNP	T	A	A			TCGA-EL-A3CU-01A-11D-A19J-08	TCGA-EL-A3CU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	8fbab446-f05f-4385-ac05-7566aa524929	e62e18f2-a371-4ed6-99d9-7c9e705a81a7	g.chr8:144548018T>A	uc003yyd.2	-	9	2205	c.2176A>T	c.(2176-2178)ATG>TTG	p.M726L		NM_015117	NP_055932	Q8IXZ2	ZC3H3_HUMAN	zinc finger CCCH-type containing 3	726	C3H1-type 3.				mRNA polyadenylation|poly(A)+ mRNA export from nucleus|regulation of mRNA export from nucleus	nucleus	nucleic acid binding|zinc ion binding			skin(1)	1	all_cancers(97;8.64e-11)|all_epithelial(106;6.43e-09)|Lung NSC(106;0.000202)|all_lung(105;0.000548)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.107)|BRCA - Breast invasive adenocarcinoma(115;0.107)			CACACCGGCATCTGCAGGGAG	0.652000													3	17	---	---	---	---	0	0	0.004672	0	0
TUBBP5	643224	broad.mit.edu	37	9	141070824	141070824	+	Missense_Mutation	SNP	T	G	G	rs9410092	by1000genomes	TCGA-EL-A3CU-01A-11D-A19J-08	TCGA-EL-A3CU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	8fbab446-f05f-4385-ac05-7566aa524929	e62e18f2-a371-4ed6-99d9-7c9e705a81a7	g.chr9:141070824T>G	uc004com.2	+	4	488	c.227T>G	c.(226-228)GTT>GGT	p.V76G	TUBBP5_uc010ncq.2_3'UTR					RecName: Full=Putative tubulin beta-4q chain;												0						TCTGGGATGGTTACCCTCCTC	0.582000													4	45	---	---	---	---	0	0	0.021553	0	0
MORF4L2	9643	broad.mit.edu	37	X	102931475	102931475	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3CU-01A-11D-A19J-08	TCGA-EL-A3CU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	8fbab446-f05f-4385-ac05-7566aa524929	e62e18f2-a371-4ed6-99d9-7c9e705a81a7	g.chrX:102931475C>T	uc004ekw.2	-	4	1713	c.481G>A	c.(481-483)GAG>AAG	p.E161K	MORF4L2_uc004ela.2_Missense_Mutation_p.E161K|MORF4L2_uc004ekx.2_Missense_Mutation_p.E161K|MORF4L2_uc004elb.2_Missense_Mutation_p.E161K|MORF4L2_uc004eky.2_Missense_Mutation_p.E161K|MORF4L2_uc010nos.2_Missense_Mutation_p.E161K|MORF4L2_uc004ekz.2_Missense_Mutation_p.E161K|MORF4L2_uc011mry.1_Missense_Mutation_p.E161K|MORF4L2_uc011mrz.1_Missense_Mutation_p.E161K|MORF4L2_uc004elc.2_Missense_Mutation_p.E161K|MORF4L2_uc004elf.2_Missense_Mutation_p.E161K|MORF4L2_uc004ele.2_Missense_Mutation_p.E161K|MORF4L2_uc011msa.1_Missense_Mutation_p.E161K|MORF4L2_uc011msb.1_Missense_Mutation_p.E161K|MORF4L2_uc011msc.1_Missense_Mutation_p.E161K|MORF4L2_uc011msd.1_Missense_Mutation_p.E161K|MORF4L2_uc004eld.2_Missense_Mutation_p.E161K	NM_012286	NP_036418	Q15014	MO4L2_HUMAN	mortality factor 4 like 2	161					chromatin modification|DNA repair|regulation of cell growth|transcription, DNA-dependent	nucleolus	protein binding				0						TTTGCATACTCCTCCAGAATT	0.388000													61	158	---	---	---	---	0	0	0.048971	0	0
GPR119	139760	broad.mit.edu	37	X	129519127	129519127	+	Missense_Mutation	SNP	T	G	G			TCGA-EL-A3CU-01A-11D-A19J-08	TCGA-EL-A3CU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	8fbab446-f05f-4385-ac05-7566aa524929	e62e18f2-a371-4ed6-99d9-7c9e705a81a7	g.chrX:129519127T>G	uc011muv.1	-	1	295	c.295A>C	c.(295-297)ATC>CTC	p.I99L		NM_178471	NP_848566	Q8TDV5	GP119_HUMAN	G protein-coupled receptor 119	99	Helical; Name=3; (Potential).					integral to membrane|plasma membrane	lipid binding			ovary(2)	2						TCAAAGGTGATCAGCATGACC	0.592000													52	114	---	---	---	---	0	0	0.048971	0	0
SLC24A1	9187	broad.mit.edu	37	15	65918177	65918179	+	In_Frame_Del	DEL	CTG	-	-			TCGA-EL-A3CU-01A-11D-A19J-08	TCGA-EL-A3CU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	8fbab446-f05f-4385-ac05-7566aa524929	e62e18f2-a371-4ed6-99d9-7c9e705a81a7	g.chr15:65918177_65918179delCTG	uc010ujf.1	+	2	2046_2048	c.1759_1761delCTG	c.(1759-1761)CTGdel	p.L591del	SLC24A1_uc010ujd.1_In_Frame_Del_p.L591del|SLC24A1_uc010uje.1_In_Frame_Del_p.L591del|SLC24A1_uc010ujg.1_In_Frame_Del_p.L591del|SLC24A1_uc010ujh.1_In_Frame_Del_p.L591del	NM_004727	NP_004718	O60721	NCKX1_HUMAN	solute carrier family 24	591	Helical; (Potential).				response to light intensity|visual perception	integral to plasma membrane|membrane fraction|outer membrane	calcium, potassium:sodium antiporter activity|protein binding|symporter activity				0						GTGGGAGAGCCTGCTGCTGCTGC	0.547													7	108	---	---	---	---					
UBN1	29855	broad.mit.edu	37	16	4910691	4910693	+	In_Frame_Del	DEL	AGA	-	-			TCGA-EL-A3CU-01A-11D-A19J-08	TCGA-EL-A3CU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	8fbab446-f05f-4385-ac05-7566aa524929	e62e18f2-a371-4ed6-99d9-7c9e705a81a7	g.chr16:4910691_4910693delAGA	uc002cyb.2	+	7	1037_1039	c.698_700delAGA	c.(697-702)GAGAAG>GAG	p.K238del	UBN1_uc010uxw.1_In_Frame_Del_p.K238del|UBN1_uc002cyc.2_In_Frame_Del_p.K238del	NM_001079514	NP_001072982	Q9NPG3	UBN1_HUMAN	ubinuclein 1	238	Lys-rich.				chromatin modification|interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter	PML body|tight junction	DNA binding|sequence-specific DNA binding transcription factor activity			skin(2)	2						GCCAGTAAGGAGAAGAAGAAGAA	0.453													7	235	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	64893259	64893259	+	IGR	DEL	A	-	-			TCGA-EL-A3CU-01A-11D-A19J-08	TCGA-EL-A3CU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	8fbab446-f05f-4385-ac05-7566aa524929	e62e18f2-a371-4ed6-99d9-7c9e705a81a7	g.chr2:64893259delA								SERTAD2 (12213 upstream) : SLC1A4 (322320 downstream)																							AACTTAAAATAAAAAAAAAAA	0.269													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	91899626	91899627	+	IGR	DEL	AA	-	-			TCGA-EL-A3CU-01A-11D-A19J-08	TCGA-EL-A3CU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	8fbab446-f05f-4385-ac05-7566aa524929	e62e18f2-a371-4ed6-99d9-7c9e705a81a7	g.chr2:91899626_91899627delAA								LOC654342 (51651 upstream) : GGT8P (63741 downstream)																							CCAGAGGCTCAAAAAAAAAAAA	0.287													3	3	---	---	---	---					
RRBP1	6238	broad.mit.edu	37	20	17601284	17601285	+	Frame_Shift_Ins	INS	-	A	A			TCGA-EL-A3CU-01A-11D-A19J-08	TCGA-EL-A3CU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	8fbab446-f05f-4385-ac05-7566aa524929	e62e18f2-a371-4ed6-99d9-7c9e705a81a7	g.chr20:17601284_17601285insA	uc010gcm.1	-	8	1000_1001	c.642_643insT	c.(640-645)TCTGTCfs	p.S214fs	RRBP1_uc010zrp.1_5'Flank|RRBP1_uc002wpt.1_Intron|RRBP1_uc002wpu.2_Intron|RRBP1_uc002wpv.1_Intron|RRBP1_uc002wpw.1_Intron|RRBP1_uc010gcl.1_Intron			Q9P2E9	RRBP1_HUMAN	Homo sapiens mRNA for KIAA1398 protein, partial cds.	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					protein transport|translation|transmembrane transport	integral to endoplasmic reticulum membrane|ribosome	receptor activity			ovary(1)	1						TCACAGGTGACAGAGACAATCC	0.624													4	7	---	---	---	---					
BSN	8927	broad.mit.edu	37	3	49691425	49691426	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-EL-A3CU-01A-11D-A19J-08	TCGA-EL-A3CU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	8fbab446-f05f-4385-ac05-7566aa524929	e62e18f2-a371-4ed6-99d9-7c9e705a81a7	g.chr3:49691425_49691426delCT	uc003cxe.3	+	5	4550_4551	c.4436_4437delCT	c.(4435-4437)CCTfs	p.P1479fs		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	1479					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		TCCAGCCCACCTCTCTCCCCGT	0.609													29	92	---	---	---	---					
MYH15	22989	broad.mit.edu	37	3	108102490	108102490	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EL-A3CU-01A-11D-A19J-08	TCGA-EL-A3CU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	8fbab446-f05f-4385-ac05-7566aa524929	e62e18f2-a371-4ed6-99d9-7c9e705a81a7	g.chr3:108102490delT	uc003dxa.1	-	41	5835	c.5778delA	c.(5776-5778)GAAfs	p.E1926fs		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	1926	Potential.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						TGACTTGAGATTCTGCCACCT	0.348													20	84	---	---	---	---					
FKBP9L	360132	broad.mit.edu	37	7	55774673	55774676	+	5'Flank	DEL	AGGG	-	-	rs72285105		TCGA-EL-A3CU-01A-11D-A19J-08	TCGA-EL-A3CU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	8fbab446-f05f-4385-ac05-7566aa524929	e62e18f2-a371-4ed6-99d9-7c9e705a81a7	g.chr7:55774673_55774676delAGGG	uc010kzl.2	-							NR_003949				SubName: Full=cDNA, FLJ79189, highly similar to FK506-binding protein 9 (EC 5.2.1.8);												0						gaaggaaggaagggaggaaggaag	0.113													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	101967482	101967482	+	IGR	DEL	A	-	-			TCGA-EL-A3CU-01A-11D-A19J-08	TCGA-EL-A3CU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	8fbab446-f05f-4385-ac05-7566aa524929	e62e18f2-a371-4ed6-99d9-7c9e705a81a7	g.chr7:101967482delA								SH2B2 (5305 upstream) : SPDYE6 (18711 downstream)																							ACTCTGTCTCAAAAAAAAAAA	0.189													6	8	---	---	---	---					
