Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PEX10	5192	broad.mit.edu	37	1	2341873	2341873	+	Missense_Mutation	SNP	C	G	G			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr1:2341873C>G	uc001ajh.2	-	2	199	c.130G>C	c.(130-132)GAG>CAG	p.E44Q	PEX10_uc001ajg.2_Missense_Mutation_p.E44Q	NM_002617	NP_002608	O60683	PEX10_HUMAN	peroxisome biogenesis factor 10 isoform 2	44					protein import into peroxisome matrix|protein import into peroxisome matrix	integral to peroxisomal membrane|peroxisomal membrane	protein binding|protein C-terminus binding|zinc ion binding|zinc ion binding			central_nervous_system(1)	1	all_cancers(77;0.000247)|all_epithelial(69;9.96e-05)|all_lung(157;0.016)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;5.35e-20)|all_lung(118;2.78e-08)|Lung NSC(185;2.69e-06)|Breast(487;0.00147)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Medulloblastoma(700;0.123)|Lung SC(97;0.128)		Epithelial(90;1.1e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.02e-23)|GBM - Glioblastoma multiforme(42;9e-08)|Colorectal(212;3.94e-05)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00102)|BRCA - Breast invasive adenocarcinoma(365;0.00435)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0169)|Lung(427;0.199)		TTCCTCCACTCCAGCCACTTC	0.592000													4	72	---	---	---	---	0	0	0.003080	0	0
TAS1R2	80834	broad.mit.edu	37	1	19181248	19181248	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr1:19181248G>A	uc001bba.1	-	3	717	c.716C>T	c.(715-717)ACG>ATG	p.T239M		NM_152232	NP_689418	Q8TE23	TS1R2_HUMAN	taste receptor, type 1, member 2 precursor	239	Extracellular (Potential).				detection of chemical stimulus involved in sensory perception of sweet taste	plasma membrane	protein heterodimerization activity|taste receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00466)|BRCA - Breast invasive adenocarcinoma(304;3.56e-05)|Kidney(64;0.000177)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	Aspartame(DB00168)	TGTGGGCAGCGTCTCCTGGAA	0.642000													12	15	---	---	---	---	0	0	0.002450	0	0
INPP5F	22876	broad.mit.edu	37	10	121586462	121586462	+	Missense_Mutation	SNP	T	C	C			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr10:121586462T>C	uc001leo.2	+	20	2735	c.2569T>C	c.(2569-2571)TCA>CCA	p.S857P	INPP5F_uc001lep.2_Missense_Mutation_p.S247P	NM_014937	NP_055752	Q9Y2H2	SAC2_HUMAN	inositol polyphosphate-5-phosphatase F	857							phosphoric ester hydrolase activity			ovary(2)	2		Lung NSC(174;0.109)|all_lung(145;0.142)		all cancers(201;0.00205)|BRCA - Breast invasive adenocarcinoma(275;0.158)		AGATAATGACTCATACCACTC	0.408000													47	78	---	---	---	---	0	0	0.003610	0	0
MUC5B	727897	broad.mit.edu	37	11	1281040	1281040	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr11:1281040G>A	uc009ycr.1	+	67	17905	c.17779G>A	c.(17779-17781)GCC>ACC	p.A5927T	MUC5B_uc001ltb.2_Missense_Mutation_p.A5593T	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	5590					cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		CGTCCAGACCGCCTGCCTCAC	0.657000													10	119	---	---	---	---	0	0	0.001368	0	0
SERPINE3	647174	broad.mit.edu	37	13	51915229	51915229	+	Missense_Mutation	SNP	T	G	G			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr13:51915229T>G	uc001vfh.2	+	1	62	c.2T>G	c.(1-3)ATG>AGG	p.M1R	SERPINE3_uc010tgp.1_Missense_Mutation_p.M1R	NM_001101320	NP_001094790	A8MV23	SERP3_HUMAN	nexin-related serine protease inhibitor	1					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)	2						CCAGCCTCCATGCCGCCTTTC	0.557000													33	60	---	---	---	---	0	0	0.002222	0	0
SLC15A1	6564	broad.mit.edu	37	13	99354751	99354751	+	Silent	SNP	T	C	C			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr13:99354751T>C	uc001vno.2	-	18	1526	c.1449A>G	c.(1447-1449)AAA>AAG	p.K483K		NM_005073	NP_005064	P46059	S15A1_HUMAN	solute carrier family 15 (oligopeptide	483	Extracellular (Potential).				digestion|protein transport	integral to plasma membrane|membrane fraction	peptide:hydrogen symporter activity			ovary(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)				Cefadroxil(DB01140)|Ceftibuten(DB01415)|Cyclacillin(DB01000)	CATTTTCCCCTTTTTCTGGCT	0.254000													3	118	---	---	---	---	0	0	0.000602	0	0
C13orf27	93081	broad.mit.edu	37	13	103419661	103419661	+	Silent	SNP	G	A	A			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr13:103419661G>A	uc001vpo.2	-	5	644	c.466C>T	c.(466-468)CTG>TTG	p.L156L	C13orf27_uc001vpn.2_Silent_p.L115L|C13orf27_uc001vpp.2_Silent_p.L115L	NM_138779	NP_620134	Q5JUR7	CM027_HUMAN	hypothetical protein LOC93081	156											0	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					GACACAAACAGTACAGGCTCT	0.403000													3	88	---	---	---	---	0	0	0.000602	0	0
ABHD4	63874	broad.mit.edu	37	14	23075393	23075393	+	Missense_Mutation	SNP	G	C	C			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr14:23075393G>C	uc001wgm.2	+	5	775	c.706G>C	c.(706-708)GAT>CAT	p.D236H	ABHD4_uc010tna.1_Missense_Mutation_p.M262I|ABHD4_uc010tnb.1_RNA	NM_022060	NP_071343	Q8TB40	ABHD4_HUMAN	abhydrolase domain containing 4	236					lipid catabolic process		hydrolase activity			central_nervous_system(1)	1	all_cancers(95;5.49e-05)			GBM - Glioblastoma multiforme(265;0.0153)		CTTTGAAGATGATACCATATC	0.517000													3	28	---	---	---	---	0	0	0.000248	0	0
TTLL5	23093	broad.mit.edu	37	14	76259282	76259282	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr14:76259282C>T	uc001xrx.2	+	27	3215	c.3010C>T	c.(3010-3012)CAT>TAT	p.H1004Y	TTLL5_uc010ask.1_Missense_Mutation_p.H1019Y|TTLL5_uc001xrz.2_Missense_Mutation_p.H579Y|TTLL5_uc001xsa.2_Missense_Mutation_p.H78Y	NM_015072	NP_055887	Q6EMB2	TTLL5_HUMAN	tubulin tyrosine ligase-like family, member 5	1004					protein modification process|transcription, DNA-dependent	centrosome|cilium|microtubule basal body|nucleus	tubulin-tyrosine ligase activity			ovary(2)|central_nervous_system(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.029)		AAACAAGCATCATTCAGGAAT	0.378000													12	37	---	---	---	---	0	0	0.002450	0	0
RRN3P3	100131998	broad.mit.edu	37	16	22448598	22448598	+	RNA	SNP	T	C	C			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr16:22448598T>C	uc002dkp.2	-	1		c.439A>G			RRN3P3_uc010vbu.1_RNA|LOC641298_uc010bxf.2_RNA	NR_027460				Homo sapiens cDNA FLJ31180 fis, clone KIDNE2000266.												0						gcctcctccttctcctccttc	0.542000													2	4	---	---	---	---	0	0	0.004672	0	0
USP10	9100	broad.mit.edu	37	16	84792342	84792342	+	Missense_Mutation	SNP	C	G	G			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr16:84792342C>G	uc002fii.2	+	5	1355	c.1213C>G	c.(1213-1215)CTA>GTA	p.L405V	USP10_uc010voe.1_Missense_Mutation_p.L409V|USP10_uc010vof.1_5'UTR|USP10_uc002fij.2_Intron	NM_005153	NP_005144	Q14694	UBP10_HUMAN	ubiquitin specific protease 10	405					DNA damage response, signal transduction by p53 class mediator|DNA repair|protein deubiquitination|ubiquitin-dependent protein catabolic process	early endosome|intermediate filament cytoskeleton|nucleus	cystic fibrosis transmembrane conductance regulator binding|p53 binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity				0						GAATGTAACCCTAATCCATAA	0.438000													5	137	---	---	---	---	0	0	0.003080	0	0
INTS2	57508	broad.mit.edu	37	17	59989322	59989322	+	Silent	SNP	G	C	C			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr17:59989322G>C	uc002izn.2	-	6	859	c.783C>G	c.(781-783)GCC>GCG	p.A261A	INTS2_uc002izm.2_Silent_p.A253A	NM_020748	NP_065799	Q9H0H0	INT2_HUMAN	integrator complex subunit 2	261					snRNA processing	integral to membrane|integrator complex|nuclear membrane	protein binding			ovary(1)|lung(1)|pancreas(1)	3						GGACCTTGAGGGCCTGAGAAG	0.438000													9	120	---	---	---	---	0	0	0.003163	0	0
TXNDC2	84203	broad.mit.edu	37	18	9887098	9887098	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr18:9887098G>A	uc002koi.3	+	2	1071	c.622G>A	c.(622-624)GAC>AAC	p.D208N	TXNDC2_uc010wzq.1_Intron|TXNDC2_uc002koh.3_Missense_Mutation_p.D141N	NM_001098529	NP_001091999	Q86VQ3	TXND2_HUMAN	thioredoxin domain-containing 2 isoform 2	208	22 X 15 AA approximate tandem repeat of Q-P-K-X-G-D-I-P-K-S-[PS]-E-[KE]-X-I.|7.				cell differentiation|cell redox homeostasis|glycerol ether metabolic process|multicellular organismal development|spermatogenesis	cytoplasm	electron carrier activity|nutrient reservoir activity|protein disulfide oxidoreductase activity|thioredoxin-disulfide reductase activity			ovary(1)|pancreas(1)	2						CAAAGAGGGTGACATCCCCAA	0.557000													4	184	---	---	---	---	0	0	0.001168	0	0
SETBP1	26040	broad.mit.edu	37	18	42530643	42530643	+	Missense_Mutation	SNP	A	T	T			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr18:42530643A>T	uc010dni.2	+	4	1634	c.1338A>T	c.(1336-1338)GAA>GAT	p.E446D		NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	446						nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		TGAGCAGTGAAGTAGTTAACA	0.453000									Schinzel-Giedion_syndrome				6	98	---	---	---	---	0	0	0.001984	0	0
ZNF57	126295	broad.mit.edu	37	19	2917961	2917961	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr19:2917961C>T	uc002lwr.2	+	4	1490	c.1342C>T	c.(1342-1344)CAT>TAT	p.H448Y	ZNF57_uc010xha.1_Missense_Mutation_p.H416Y	NM_173480	NP_775751	Q68EA5	ZNF57_HUMAN	zinc finger protein 57	448	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|GBM - Glioblastoma multiforme(1328;0.00161)|STAD - Stomach adenocarcinoma(1328;0.18)		AGAGCAGCTCCATAAATGTGA	0.443000													4	85	---	---	---	---	0	0	0.001168	0	0
ZNF443	10224	broad.mit.edu	37	19	12542283	12542283	+	Missense_Mutation	SNP	A	G	G			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr19:12542283A>G	uc002mtu.2	-	4	901	c.703T>C	c.(703-705)TCT>CCT	p.S235P		NM_005815	NP_005806	Q9Y2A4	ZN443_HUMAN	zinc finger protein 443	235	C2H2-type 4.				induction of apoptosis|regulation of transcription, DNA-dependent|response to stress|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1						CTGTAAAAAGAAAAGGCTTTA	0.378000													5	175	---	---	---	---	0	0	0.004482	0	0
ZNF208	7757	broad.mit.edu	37	19	22155282	22155282	+	Missense_Mutation	SNP	T	C	C			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr19:22155282T>C	uc002nqp.2	-	5	2403	c.2254A>G	c.(2254-2256)AAG>GAG	p.K752E	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				TGAATTACCTTATGTTTAGTA	0.373000													3	65	---	---	---	---	0	0	0.001984	0	0
DMPK	1760	broad.mit.edu	37	19	46278224	46278224	+	Silent	SNP	G	A	A	rs138445739		TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr19:46278224G>A	uc002pdd.1	-	8	1789	c.1245C>T	c.(1243-1245)TAC>TAT	p.Y415Y	DMPK_uc010xxs.1_Silent_p.Y316Y|DMPK_uc002pde.1_Silent_p.Y410Y|DMPK_uc002pdf.1_Silent_p.Y405Y|DMPK_uc002pdg.1_Silent_p.Y400Y|DMPK_uc002pdh.1_Silent_p.Y400Y|DMPK_uc002pdi.1_Silent_p.Y431Y|DMPK_uc010xxt.1_Silent_p.Y400Y	NM_001081563	NP_001075032	Q09013	DMPK_HUMAN	myotonic dystrophy protein kinase isoform 1	415	AGC-kinase C-terminal.				regulation of heart contraction		ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)	3		Ovarian(192;0.0308)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00616)|GBM - Glioblastoma multiforme(486;0.0825)|Epithelial(262;0.24)		CCATGCAGGAGTAGGAGTAGC	0.617000													3	70	---	---	---	---	0	0	0.000248	0	0
ZNF83	55769	broad.mit.edu	37	19	53116885	53116885	+	Silent	SNP	A	G	G	rs7247257		TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr19:53116885A>G	uc002pzu.3	-	2	2177	c.933T>C	c.(931-933)CAT>CAC	p.H311H	ZNF83_uc002pzv.3_Silent_p.H311H|ZNF83_uc010eps.2_Silent_p.H283H|ZNF83_uc010ept.2_Silent_p.H311H|ZNF83_uc010epu.2_Silent_p.H311H|ZNF83_uc010epv.2_Silent_p.H311H|ZNF83_uc010epw.2_Silent_p.H311H|ZNF83_uc010epx.2_Silent_p.H283H|ZNF83_uc010epy.2_Silent_p.H311H|ZNF83_uc010epz.2_Silent_p.H283H	NM_018300	NP_060770	P51522	ZNF83_HUMAN	zinc finger protein 83 isoform a	311	C2H2-type 8.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(262;0.00841)|GBM - Glioblastoma multiforme(134;0.0244)		TCTCTCCAGTATGAATTCTCC	0.418000													12	206	---	---	---	---	0	0	0.001368	0	0
TTN	7273	broad.mit.edu	37	2	179579858	179579858	+	Silent	SNP	G	A	A			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr2:179579858G>A	uc010zfg.1	-	87	22547	c.22323C>T	c.(22321-22323)AGC>AGT	p.S7441S	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.S4102S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8368							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACTTCTTGCCGCTCCTAAGTT	0.443000													8	290	---	---	---	---	0	0	0.008291	0	0
TM9SF4	9777	broad.mit.edu	37	20	30753110	30753110	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr20:30753110G>A	uc002wxj.2	+	18	2027	c.1792G>A	c.(1792-1794)GAG>AAG	p.E598K	TM9SF4_uc010zts.1_Missense_Mutation_p.E505K|TM9SF4_uc002wxk.2_Missense_Mutation_p.E581K|TM9SF4_uc010gdz.2_Missense_Mutation_p.E477K	NM_014742	NP_055557	Q92544	TM9S4_HUMAN	transmembrane 9 superfamily protein member 4	598						integral to membrane				central_nervous_system(1)|pancreas(1)	2			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			GGACATCGTGGAGTTCATCCC	0.562000													30	191	---	---	---	---	0	0	0.006999	0	0
IFNAR2	3455	broad.mit.edu	37	21	34635187	34635187	+	Missense_Mutation	SNP	G	C	C			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr21:34635187G>C	uc002yrd.2	+	9	1258	c.930G>C	c.(928-930)AAG>AAC	p.K310N	IFNAR2_uc002yre.2_Missense_Mutation_p.K310N|IFNAR2_uc002yrf.2_3'UTR|IL10RB_uc002yrh.1_Intron|IL10RB_uc002yri.1_Intron	NM_207585	NP_997468	P48551	INAR2_HUMAN	interferon alpha/beta receptor 2 isoform a	310	Cytoplasmic (Potential).				JAK-STAT cascade|regulation of type I interferon-mediated signaling pathway|response to interferon-alpha|response to virus|type I interferon-mediated signaling pathway	extracellular region|extracellular space|integral to plasma membrane	protein kinase binding|type I interferon binding|type I interferon receptor activity				0					Interferon Alfa-2a, Recombinant(DB00034)|Interferon Alfa-2b, Recombinant(DB00105)|Interferon alfa-n1(DB00011)|Interferon alfa-n3(DB00018)|Interferon alfacon-1(DB00069)|Interferon beta-1b(DB00068)|Peginterferon alfa-2a(DB00008)|Peginterferon alfa-2b(DB00022)	TCAACAGAAAGAAGAAAGTGT	0.428000													18	127	---	---	---	---	0	0	0.002780	0	0
RFPL1	5988	broad.mit.edu	37	22	29833529	29833529	+	5'Flank	SNP	A	G	G			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr22:29833529A>G	uc003afn.2	+						RFPL1S_uc003afm.1_RNA	NM_021026	NP_066306	O75677	RFPL1_HUMAN	ret finger protein-like 1								zinc ion binding				0						AACTGGAGATATATCACCAGT	0.348000													3	4	---	---	---	---	0	0	0.004672	0	0
HHLA2	11148	broad.mit.edu	37	3	108076828	108076828	+	Missense_Mutation	SNP	C	G	G			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr3:108076828C>G	uc003dwy.3	+	6	990	c.823C>G	c.(823-825)CTG>GTG	p.L275V	HHLA2_uc011bhl.1_Missense_Mutation_p.L211V|HHLA2_uc010hpu.2_Missense_Mutation_p.L275V|HHLA2_uc003dwz.2_Missense_Mutation_p.L275V	NM_007072	NP_009003	Q9UM44	HHLA2_HUMAN	HERV-H LTR-associating 2 precursor	275	Ig-like V-type 2.					integral to membrane				ovary(1)	1						GGCTTACTATCTGAGCTCCTC	0.373000													18	103	---	---	---	---	0	0	0.001882	0	0
PRDM9	56979	broad.mit.edu	37	5	23526999	23526999	+	Missense_Mutation	SNP	C	G	G			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr5:23526999C>G	uc003jgo.2	+	11	1984	c.1802C>G	c.(1801-1803)ACA>AGA	p.T601R		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	601	C2H2-type 4.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						CACCAGAGGACACACACAGGG	0.597000										HNSCC(3;0.000094)			4	169	---	---	---	---	0	0	0.001168	0	0
PCDHA8	56140	broad.mit.edu	37	5	140222759	140222759	+	Missense_Mutation	SNP	C	G	G			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr5:140222759C>G	uc003lhs.2	+	1	1853	c.1853C>G	c.(1852-1854)CCT>CGT	p.P618R	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Missense_Mutation_p.P618R	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	618	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCAAGCAGCCCTCGCATCCCG	0.677000													8	223	---	---	---	---	0	0	0.008291	0	0
RNF216	54476	broad.mit.edu	37	7	5662664	5662664	+	Missense_Mutation	SNP	G	T	T			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr7:5662664G>T	uc003soy.1	-	17	2618	c.2428C>A	c.(2428-2430)CCT>ACT	p.P810T	RNF216_uc010ksz.1_Missense_Mutation_p.P432T|RNF216_uc010kta.1_Missense_Mutation_p.P432T|RNF216_uc011jwj.1_Missense_Mutation_p.P432T|RNF216_uc003sox.1_Missense_Mutation_p.P867T	NM_207116	NP_996999	Q9NWF9	RN216_HUMAN	ring finger protein 216 isoform b	810	Pro-rich.				apoptosis|interspecies interaction between organisms|proteasomal ubiquitin-dependent protein catabolic process|protein K48-linked ubiquitination|regulation of defense response to virus by host|regulation of interferon-beta production	cytoplasm|nucleus|nucleus	ligase activity|protein binding|protein binding|zinc ion binding			ovary(3)|breast(2)	5		Ovarian(82;0.07)		UCEC - Uterine corpus endometrioid carcinoma (126;0.135)|OV - Ovarian serous cystadenocarcinoma(56;2.69e-13)		CGCACGGGAGGCAGGGGGAAG	0.647000													54	110	---	---	---	---	4.33383e-22	5.44507e-22	0.003610	1	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				27	52	---	---	---	---	0	0	0.002445	0	0
ADCY8	114	broad.mit.edu	37	8	132002665	132002665	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr8:132002665G>A	uc003ytd.3	-	2	1340	c.1084C>T	c.(1084-1086)CGC>TGC	p.R362C	ADCY8_uc010mds.2_Missense_Mutation_p.R362C	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	362	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			GTCTCCAGGCGCAGCCTGGCC	0.502000										HNSCC(32;0.087)			4	159	---	---	---	---	0	0	0.000602	0	0
GPT	2875	broad.mit.edu	37	8	145732033	145732033	+	Silent	SNP	C	T	T			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr8:145732033C>T	uc011lli.1	+	10	1438	c.1281C>T	c.(1279-1281)CGC>CGT	p.R427R	GPT_uc003zdh.3_Silent_p.R427R|MFSD3_uc003zdi.1_5'Flank	NM_005309	NP_005300	P24298	ALAT1_HUMAN	glutamic pyruvate transaminase	427					gluconeogenesis	cytosol	1-aminocyclopropane-1-carboxylate synthase activity|L-alanine:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding			ovary(1)|central_nervous_system(1)	2	all_cancers(97;5.56e-11)|all_epithelial(106;3.54e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.48e-41)|Epithelial(56;1.85e-40)|all cancers(56;3.59e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0483)|Colorectal(110;0.055)		L-Alanine(DB00160)|L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	CGGTGGAGCGCGCTCAGGTCA	0.731000													7	9	---	---	---	---	0	0	0.003080	0	0
BRD3	8019	broad.mit.edu	37	9	136915622	136915622	+	Silent	SNP	G	A	A	rs142203601	byFrequency	TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr9:136915622G>A	uc004cew.2	-	5	776	c.588C>T	c.(586-588)ATC>ATT	p.I196I	BRD3_uc004cex.2_Silent_p.I196I	NM_007371	NP_031397	Q15059	BRD3_HUMAN	bromodomain containing protein 3	196						nucleus	protein binding		BRD3/C15orf55(3)	stomach(4)|midline_organs(3)|kidney(1)	8				OV - Ovarian serous cystadenocarcinoma(145;1.43e-08)|Epithelial(140;8.41e-08)|all cancers(34;5.21e-07)		GGGTGGCAGCGATGACGGGCG	0.662000			T	NUT|C15orf55	lethal midline carcinoma of young people								15	214	---	---	---	---	0	0	0.001523	0	0
Unknown	0	broad.mit.edu	37	MT	11907	11907	+	RNA	SNP	T	C	C			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chrM:11907T>C	uc004cov.3	+	1		c.1330T>C			uc004cow.1_5'Flank|uc004cox.3_5'Flank|uc004coy.2_5'Flank					Homo sapiens potential LAG1 interactor mRNA, partial cds.																		CTCTGTGCTAGTAACCACGTT	0.443000													12	2	---	---	---	---	0	0	0.004990	0	0
ZNF41	7592	broad.mit.edu	37	X	47308077	47308077	+	Silent	SNP	A	G	G			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chrX:47308077A>G	uc004dhs.3	-	4	1285	c.1218T>C	c.(1216-1218)TTT>TTC	p.F406F	ZNF41_uc004dhu.3_Silent_p.F398F|ZNF41_uc004dht.3_Silent_p.F278F|ZNF41_uc004dhv.3_Silent_p.F374F|ZNF41_uc004dhw.3_Silent_p.F366F|ZNF41_uc004dhy.3_Silent_p.F364F|ZNF41_uc004dhx.3_Silent_p.F364F|ZNF41_uc011mlm.1_Silent_p.F278F	NM_153380	NP_700359	P51814	ZNF41_HUMAN	zinc finger protein 41	406	C2H2-type 4.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3		all_lung(315;0.000129)				ATCTCTGGAAAAAGGCTTTTC	0.403000													23	44	---	---	---	---	0	0	0.004656	0	0
FAM120C	54954	broad.mit.edu	37	X	54209023	54209023	+	Missense_Mutation	SNP	G	T	T	rs144201658		TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chrX:54209023G>T	uc004dsz.3	-	1	692	c.609C>A	c.(607-609)AAC>AAA	p.N203K	FAM120C_uc011moh.1_Missense_Mutation_p.N203K|FAM120C_uc004dta.2_Missense_Mutation_p.N203K	NM_017848	NP_060318	Q9NX05	F120C_HUMAN	hypothetical protein LOC54954	203										ovary(1)|central_nervous_system(1)	2						GGGTGCCCTTGTTGCCCACGT	0.706000													20	39	---	---	---	---	7.41877e-09	9.088e-09	0.001882	1	0
Unknown	0	broad.mit.edu	37	1	113283992	113283993	+	IGR	INS	-	GTGT	GTGT	rs142481203	by1000genomes	TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr1:113283992_113283993insGTGT								FAM19A3 (14138 upstream) : SLC16A1 (170479 downstream)																							aggcaaaaagcgtgtgtgtgtg	0.000													5	2	---	---	---	---					
BCL9	607	broad.mit.edu	37	1	147091501	147091501	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr1:147091501delC	uc001epq.2	+	8	2280	c.1540delC	c.(1540-1542)CCCfs	p.P514fs	BCL9_uc010ozr.1_Frame_Shift_Del_p.P440fs	NM_004326	NP_004317	O00512	BCL9_HUMAN	B-cell CLL/lymphoma 9	514	Poly-Pro.|Pro-rich.				Wnt receptor signaling pathway	nucleus	protein binding			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.115)					GGTCCGAGGACCCCCCCCTCC	0.582			T	IGH@|IGL@	B-ALL								10	228	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	148855149	148855149	+	IGR	DEL	G	-	-			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr1:148855149delG								NBPF16 (96838 upstream) : LOC645166 (73137 downstream)																							AAAAGGCGGCGGGGGGCAAAA	0.687													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	4184141	4184142	+	IGR	INS	-	C	C			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr10:4184141_4184142insC								KLF6 (356668 upstream) : LOC100216001 (437302 downstream)																							CTTGCCTCCCACCCCCCAGCAG	0.530													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	125013888	125013889	+	IGR	INS	-	CAC	CAC			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr10:125013888_125013889insCAC								BUB3 (89002 upstream) : GPR26 (411982 downstream)																							caccatcatcacaccaccacca	0.163													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	125014445	125014446	+	IGR	INS	-	TCA	TCA	rs146799469		TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr10:125014445_125014446insTCA								BUB3 (89559 upstream) : GPR26 (411425 downstream)																							caccactactgtcatcactatc	0.000													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	125014781	125014791	+	IGR	DEL	CATCACACCAC	-	-			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr10:125014781_125014791delCATCACACCAC								BUB3 (89895 upstream) : GPR26 (411080 downstream)																							ccattaccatcatcacaccaccaccatcatc	0.000													4	6	---	---	---	---					
MARK2	2011	broad.mit.edu	37	11	63606995	63606995	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr11:63606995delC	uc001nxw.2	+	1	596	c.17delC	c.(16-18)ACCfs	p.T6fs	MARK2_uc001nxx.2_Frame_Shift_Del_p.T6fs|MARK2_uc001nxy.2_Frame_Shift_Del_p.T6fs|MARK2_uc001nxv.3_Frame_Shift_Del_p.T6fs	NM_001039469	NP_001034558	Q7KZI7	MARK2_HUMAN	MAP/microtubule affinity-regulating kinase 2	6					cell differentiation|establishment or maintenance of epithelial cell apical/basal polarity|intracellular protein kinase cascade|multicellular organismal development|response to oxidative stress	plasma membrane	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			stomach(1)|ovary(1)|lung(1)	3						AGCGCTCGGACCCCCCTACCC	0.692													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	14	97175625	97175626	+	IGR	DEL	GC	-	-			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr14:97175625_97175626delGC								PAPOLA (142179 upstream) : VRK1 (88058 downstream)																							ggtgggattagcgcagcagtgg	0.035													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	26299642	26299643	+	IGR	DEL	AG	-	-			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr15:26299642_26299643delAG								ATP10A (189325 upstream) : GABRB3 (489052 downstream)																							AACATTGGGCagagagagagag	0.342													5	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	76079339	76079339	+	5'Flank	DEL	A	-	-	rs77222978		TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr15:76079339delA	uc002bbb.1	-						uc002bbc.1_5'Flank					DQ577530																		TCAAGAAATTAAAAAAAAAAA	0.388													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	92293055	92293060	+	IGR	DEL	GGTGGA	-	-	rs142559582	by1000genomes	TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr15:92293055_92293060delGGTGGA								SV2B (454407 upstream) : SLCO3A1 (103878 downstream)																							aggtggaggtggtggaggtggaggtg	0.000													4	6	---	---	---	---					
TARSL2	123283	broad.mit.edu	37	15	102264789	102264790	+	5'Flank	INS	-	G	G	rs11390653		TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr15:102264789_102264790insG	uc002bxm.2	-						TARSL2_uc010usi.1_5'Flank	NM_152334	NP_689547	A2RTX5	SYTC2_HUMAN	threonyl-tRNA synthetase-like 2						threonyl-tRNA aminoacylation	cytoplasm	ATP binding|threonine-tRNA ligase activity			ovary(2)	2	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000268)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			gggcggggcCTAGGCCAGATAC	0.421													2	4	---	---	---	---					
MRPL28	10573	broad.mit.edu	37	16	420348	420348	+	5'Flank	DEL	C	-	-			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr16:420348delC	uc002cgr.1	-						MRPL28_uc010bqu.1_5'Flank|MRPL28_uc002cgs.1_Intron|MRPL28_uc002cgt.1_Intron	NM_006428	NP_006419	Q13084	RM28_HUMAN	mitochondrial ribosomal protein L28 precursor						translation	mitochondrial ribosome	protein binding|structural constituent of ribosome				0		Hepatocellular(16;0.000105)|Lung NSC(18;0.0324)|all_lung(18;0.064)				gctaccccggcccccggctct	0.129													4	7	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	85536993	85536995	+	IGR	DEL	CTC	-	-			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr16:85536993_85536995delCTC								FAM92B (390879 upstream) : KIAA0182 (108034 downstream)																							TCAGCTGCCGCTCCTCCTCCTCC	0.616													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	89069393	89069393	+	IGR	DEL	A	-	-			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr16:89069393delA								CBFA2T3 (25992 upstream) : ACSF3 (90861 downstream)																							gaggagCCGGAGCCGGGGGGA	0.398													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	32790415	32790416	+	IGR	INS	-	C	C			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr17:32790415_32790416insC								CCL1 (100163 upstream) : C17orf102 (110726 downstream)																							CTCACTCCACTCCCCCCAGGGC	0.594													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	34023963	34023963	+	IGR	DEL	C	-	-			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr19:34023963delC								PEPD (11162 upstream) : CHST8 (88898 downstream)																							CCCTGCCTCTCCCCCTGCCCT	0.637													2	4	---	---	---	---					
MLL4	9757	broad.mit.edu	37	19	36212112	36212113	+	Frame_Shift_Ins	INS	-	C	C			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr19:36212112_36212113insC	uc010eei.2	+	3	1863_1864	c.1863_1864insC	c.(1861-1866)CCTCCCfs	p.P621fs		NM_014727	NP_055542	Q9UMN6	MLL4_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 4	621_622	Pro-rich.				chromatin-mediated maintenance of transcription		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(6)|breast(2)|ovary(1)|kidney(1)|skin(1)	11	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			TGccccctcctcccccagcccc	0.401													4	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	73851205	73851207	+	IGR	DEL	TCC	-	-	rs112833082		TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr2:73851205_73851207delTCC								ALMS1 (14159 upstream) : NAT8 (16643 downstream)																							CAGCTTCTGGtcctcctcctcct	0.340													3	3	---	---	---	---					
GLI2	2736	broad.mit.edu	37	2	121748127	121748127	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr2:121748127delC	uc010flp.2	+	13	4667	c.4637delC	c.(4636-4638)ACCfs	p.T1546fs	GLI2_uc002tmq.1_Intron|GLI2_uc002tmr.1_Intron|GLI2_uc002tmt.3_Frame_Shift_Del_p.T1218fs|GLI2_uc002tmu.3_Frame_Shift_Del_p.T1201fs	NM_005270	NP_005261	P10070	GLI2_HUMAN	GLI-Kruppel family member GLI2	1546					axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|lung(2)|breast(1)|central_nervous_system(1)|pancreas(1)	13	Renal(3;0.0496)	Prostate(154;0.0623)				CGCCTCACCACCCCCCGAAAC	0.627													7	610	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	128166249	128166251	+	IGR	DEL	CCA	-	-			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr2:128166249_128166251delCCA								MAP3K2 (65444 upstream) : PROC (9766 downstream)																							ACCCTCGCCCCCACCACCACCAC	0.685													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	133025925	133025925	+	IGR	DEL	G	-	-			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr2:133025925delG								NCRNA00164 (10383 upstream) : GPR39 (148222 downstream)																							GGCGGGGGGTGGGGGTTTGGG	0.612													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	148081645	148081646	+	IGR	INS	-	A	A	rs76356018		TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr2:148081645_148081646insA								PABPC1P2 (733088 upstream) : ACVR2A (520440 downstream)																							catctgacctgaaaaaaaaaac	0.000													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	177521658	177521660	+	IGR	DEL	AGG	-	-			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr2:177521658_177521660delAGG								MIR1246 (55878 upstream) : HNRNPA3 (555762 downstream)																							actctgtctcaggaggaggagga	0.103													4	7	---	---	---	---					
Unknown	0	broad.mit.edu	37	22	46389412	46389414	+	IGR	DEL	TGG	-	-			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr22:46389412_46389414delTGG								WNT7B (16404 upstream) : LOC730668 (13082 downstream)																							atggtgatgatggtggtggtggt	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	22	49153001	49153003	+	IGR	DEL	AGA	-	-			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr22:49153001_49153003delAGA								FAM19A5 (5259 upstream) : C22orf34 (655173 downstream)																							aaggaggaggagaagggaggagg	0.182													2	4	---	---	---	---					
ILDR1	286676	broad.mit.edu	37	3	121742636	121742638	+	5'Flank	DEL	CAG	-	-			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr3:121742636_121742638delCAG	uc003ees.2	-						ILDR1_uc003eer.2_5'Flank|ILDR1_uc010hrg.2_5'Flank	NM_175924	NP_787120	Q86SU0	ILDR1_HUMAN	immunoglobulin-like domain containing receptor							cytosol|integral to membrane|plasma membrane	receptor activity			skin(1)	1				GBM - Glioblastoma multiforme(114;0.156)		GATCCTagcacagcagcagcagc	0.429													4	2	---	---	---	---					
GABRA2	2555	broad.mit.edu	37	4	46392071	46392071	+	5'Flank	DEL	C	-	-			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr4:46392071delC	uc003gxc.3	-						GABRA2_uc010igc.2_5'Flank|GABRA2_uc011bzc.1_5'Flank|GABRA2_uc003gxe.2_Intron|GABRA2_uc010igd.1_5'Flank	NM_001114175	NP_001107647	P47869	GBRA2_HUMAN	gamma-aminobutyric acid A receptor, alpha 2						gamma-aminobutyric acid signaling pathway|neurotransmitter transport|regulation of neurotransmitter levels	cell junction|chloride channel complex|integral to synaptic vesicle membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|skin(2)	4					Alprazolam(DB00404)|Bromazepam(DB01558)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Fludiazepam(DB01567)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	GGAGCTGGGGCCGGGGGGGGA	0.582													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	57500223	57500223	+	IGR	DEL	A	-	-			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr4:57500223delA								ARL9 (110165 upstream) : HOPX (13931 downstream)																							ccctccaaccaaaaaaaaaaG	0.229													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	176041480	176041480	+	IGR	DEL	G	-	-			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr5:176041480delG								GPRIN1 (4349 upstream) : SNCB (5731 downstream)																							GGGGGGGGGAGGGGGGAGGGC	0.512													2	4	---	---	---	---					
C6orf146	222826	broad.mit.edu	37	6	4069208	4069211	+	Frame_Shift_Del	DEL	TGAA	-	-			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr6:4069208_4069211delTGAA	uc003mvx.2	-	7	1586_1589	c.1246_1249delTTCA	c.(1246-1251)TTCAAAfs	p.F416fs	C6orf146_uc010jnq.1_Intron|C6orf146_uc003mvy.2_Frame_Shift_Del_p.F353fs	NM_173563	NP_775834	Q8IXS0	CF146_HUMAN	hypothetical protein LOC222826	416_417										ovary(1)	1	Ovarian(93;0.0925)	all_hematologic(90;0.108)				ATAGTAGGTTTGAATGAGAGTTCT	0.387													39	132	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	130267791	130267791	+	IGR	DEL	T	-	-	rs5879985		TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr6:130267791delT								C6orf191 (85375 upstream) : L3MBTL3 (71943 downstream)																							TCAGGCAGGCTGGTGACCTCC	0.473													6	0	---	---	---	---					
ZAN	7455	broad.mit.edu	37	7	100377342	100377342	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr7:100377342delC	uc003uwj.2	+	36	6757	c.6592delC	c.(6592-6594)CCCfs	p.P2198fs	ZAN_uc003uwk.2_Frame_Shift_Del_p.P2198fs|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA|ZAN_uc011kke.1_Intron	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	2198	Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			GGGGCTCAAGCCCCCACTCTG	0.627													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	2139363	2139363	+	IGR	DEL	T	-	-			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr8:2139363delT								MYOM2 (45984 upstream) : CSMD1 (653513 downstream)																							cccttccccctcccttccccc	0.154													2	4	---	---	---	---					
GPIHBP1	338328	broad.mit.edu	37	8	144293673	144293676	+	5'Flank	DEL	GGAC	-	-	rs58848883		TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr8:144293673_144293676delGGAC	uc003yxu.1	+							NM_178172	NP_835466	Q8IV16	HDBP1_HUMAN	glycosylphosphatidylinositol anchored high						cholesterol homeostasis|intracellular protein transport|positive regulation of chylomicron remnant clearance|positive regulation of lipoprotein lipase activity|protein import|protein localization at cell surface|protein stabilization|response to heparin|triglyceride homeostasis	anchored to external side of plasma membrane|apical plasma membrane|basolateral plasma membrane|high-density lipoprotein particle|integral to membrane|intracellular	apolipoprotein binding|chylomicron binding|lipase binding|lipid binding|protein transmembrane transporter activity				0	all_cancers(97;6.49e-11)|all_epithelial(106;2.77e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)					gggcggggcgggacggggctgggg	0.270													3	4	---	---	---	---					
ERMP1	79956	broad.mit.edu	37	9	5832860	5832861	+	Frame_Shift_Ins	INS	-	C	C			TCGA-EL-A3H7-01A-11D-A21A-08	TCGA-EL-A3H7-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	508c8615-e53f-450b-9974-468904b63294	a54892b4-76e9-462a-a1c1-2495c9d2f8c9	g.chr9:5832860_5832861insC	uc003zjm.1	-	1	221_222	c.167_168insG	c.(166-168)GGTfs	p.G56fs	ERMP1_uc011lme.1_RNA|ERMP1_uc010mhs.1_5'UTR|ERMP1_uc003zjn.1_Frame_Shift_Ins_p.G56fs	NM_024896	NP_079172	Q7Z2K6	ERMP1_HUMAN	aminopeptidase Fxna	56	Cytoplasmic (Potential).				proteolysis	endoplasmic reticulum membrane|integral to membrane	metal ion binding|metallopeptidase activity			ovary(1)	1		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.00115)|Lung(218;0.111)		CGCCGCCGCTACCCCCGGGGCT	0.787													2	4	---	---	---	---					
