Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
LCK	3932	broad.mit.edu	37	1	32739980	32739980	+	Missense_Mutation	SNP	T	C	C			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr1:32739980T>C	uc001bux.2	+	2	188	c.50T>C	c.(49-51)ATC>ACC	p.I17T	LCK_uc001buy.2_Missense_Mutation_p.I17T|LCK_uc001buz.2_Missense_Mutation_p.I17T|LCK_uc010ohc.1_Missense_Mutation_p.I61T|LCK_uc001bva.2_Missense_Mutation_p.I17T	NM_005356	NP_005347	P06239	LCK_HUMAN	lymphocyte-specific protein tyrosine kinase	17	Interactions with CD4 and CD8 (By similarity).				activation of caspase activity|cellular zinc ion homeostasis|induction of apoptosis|interspecies interaction between organisms|leukocyte migration|platelet activation|positive regulation of T cell receptor signaling pathway|regulation of defense response to virus by virus|release of sequestered calcium ion into cytosol|response to drug|T cell costimulation|T cell differentiation|T cell receptor signaling pathway|viral reproduction	cytosol|Golgi apparatus|membrane raft|pericentriolar material|plasma membrane	ATP binding|ATPase binding|CD4 receptor binding|CD8 receptor binding|glycoprotein binding|non-membrane spanning protein tyrosine kinase activity|phosphatidylinositol 3-kinase binding|protein C-terminus binding|protein kinase binding|protein serine/threonine phosphatase activity|SH2 domain binding			lung(3)|central_nervous_system(2)|ovary(1)	6		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.212)			Dasatinib(DB01254)	ATGGAAAACATCGATGTGTGT	0.577000			T	TRB@	T-ALL								4	215	---	---	---	---	0	0	0.150653	0	0
IL12RB2	3595	broad.mit.edu	37	1	67833673	67833673	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr1:67833673G>A	uc001ddu.2	+	10	2064	c.1424G>A	c.(1423-1425)CGG>CAG	p.R475Q	IL12RB2_uc010oqi.1_Missense_Mutation_p.R475Q|IL12RB2_uc010oqj.1_Missense_Mutation_p.R475Q|IL12RB2_uc010oqk.1_RNA|IL12RB2_uc010oql.1_Missense_Mutation_p.R475Q|IL12RB2_uc010oqm.1_Missense_Mutation_p.R475Q|IL12RB2_uc010oqn.1_RNA	NM_001559	NP_001550	Q99665	I12R2_HUMAN	interleukin 12 receptor, beta 2 precursor	475	Fibronectin type-III 4.|Extracellular (Potential).				positive regulation of cell proliferation|positive regulation of interferon-gamma production	integral to plasma membrane	cytokine receptor activity			ovary(2)|central_nervous_system(1)	3						AACTGGCTACGGAGTCGACCC	0.507000													19	103	---	---	---	---	0	0	0.234183	0	0
MTPAP	55149	broad.mit.edu	37	10	30602720	30602720	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr10:30602720G>A	uc001iva.3	-	9	1630	c.1567C>T	c.(1567-1569)CGG>TGG	p.R523W	MTPAP_uc001ivb.3_Missense_Mutation_p.R653W	NM_018109	NP_060579	Q9NVV4	PAPD1_HUMAN	PAP associated domain containing 1 precursor	523					cell death|histone mRNA catabolic process|mRNA polyadenylation|transcription, DNA-dependent	mitochondrion	ATP binding|magnesium ion binding|manganese ion binding|polynucleotide adenylyltransferase activity|protein homodimerization activity|RNA binding|UTP binding			ovary(1)	1						CCCCAGGGCCGATTACTTGAT	0.418000													3	152	---	---	---	---	0	0	0.115264	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37414918	37414918	+	Missense_Mutation	SNP	T	C	C			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr10:37414918T>C	uc001iza.1	+	1	134	c.35T>C	c.(34-36)ATA>ACA	p.I12T		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	68						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						AACCTTAATATACAAGACGCC	0.592000													3	39	---	---	---	---	0	0	0.115264	0	0
RPL13AP6	644511	broad.mit.edu	37	10	112696573	112696573	+	Missense_Mutation	SNP	T	C	C			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr10:112696573T>C	uc010qrh.1	-	1	441	c.419A>G	c.(418-420)CAC>CGC	p.H140R	SHOC2_uc001kzl.3_Intron|SHOC2_uc009xxx.2_Intron|SHOC2_uc010qrg.1_Intron	NR_026715				SubName: Full=cDNA FLJ51256, highly similar to 60S ribosomal protein L13a;												0						GTGAGCCAGGTGCCCCAGATA	0.537000													2	9	---	---	---	---	0	0	0.115264	0	0
PTPRJ	5795	broad.mit.edu	37	11	48146708	48146708	+	Missense_Mutation	SNP	G	C	C			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr11:48146708G>C	uc001ngp.3	+	6	1418	c.1063G>C	c.(1063-1065)GGA>CGA	p.G355R	PTPRJ_uc001ngo.3_Missense_Mutation_p.G355R	NM_002843	NP_002834	Q12913	PTPRJ_HUMAN	protein tyrosine phosphatase, receptor type, J	355	Extracellular (Potential).|Fibronectin type-III 3.				contact inhibition|negative regulation of cell growth|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of MAP kinase activity|negative regulation of platelet-derived growth factor receptor signaling pathway|negative regulation of protein kinase B signaling cascade|negative regulation of T cell receptor signaling pathway|negative regulation of vascular permeability|platelet-derived growth factor receptor signaling pathway|positive chemotaxis|positive regulation of focal adhesion assembly|positive regulation of protein kinase B signaling cascade|positive regulation of survival gene product expression	cell surface|cell-cell junction|immunological synapse|integral to plasma membrane|ruffle membrane	beta-catenin binding|delta-catenin binding|gamma-catenin binding|mitogen-activated protein kinase binding|platelet-derived growth factor receptor binding|protein tyrosine phosphatase activity			breast(3)|kidney(3)|ovary(1)|skin(1)	8						TGGCACAGAAGGACAGCCCCA	0.532000													14	79	---	---	---	---	0	0	0.132662	0	0
MYO7A	4647	broad.mit.edu	37	11	76867737	76867737	+	Missense_Mutation	SNP	A	G	G			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr11:76867737A>G	uc001oyb.2	+	6	774	c.502A>G	c.(502-504)ACA>GCA	p.T168A	MYO7A_uc010rsl.1_Missense_Mutation_p.T168A|MYO7A_uc010rsm.1_Missense_Mutation_p.T157A|MYO7A_uc001oyc.2_Missense_Mutation_p.T168A	NM_000260	NP_000251	Q13402	MYO7A_HUMAN	myosin VIIA isoform 1	168	Myosin head-like.				actin filament-based movement|equilibrioception|lysosome organization|sensory perception of sound|visual perception	cytosol|lysosomal membrane|myosin complex|photoreceptor inner segment|photoreceptor outer segment|synapse	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|breast(1)	4						GACGGAGAGCACAAAGCTGAT	0.617000													7	184	---	---	---	---	0	0	0.038147	0	0
C12orf44	60673	broad.mit.edu	37	12	52470924	52470924	+	Missense_Mutation	SNP	T	C	C			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr12:52470924T>C	uc001rzu.3	+	4	1082	c.607T>C	c.(607-609)TCA>CCA	p.S203P	C12orf44_uc009zmd.2_Missense_Mutation_p.S203P|uc009zme.1_5'Flank	NM_021934	NP_068753	Q9BSB4	ATGA1_HUMAN	Atg13-interacting protein	203					autophagic vacuole assembly	pre-autophagosomal structure	identical protein binding|protein complex binding				0				BRCA - Breast invasive adenocarcinoma(357;0.0978)		CCTGGGCACCTCAGTCACCAC	0.577000													3	99	---	---	---	---	0	0	0.150653	0	0
MIR148B	442892	broad.mit.edu	37	12	54731042	54731042	+	RNA	SNP	A	G	G			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr12:54731042A>G	hsa-mir-148b|MI0000811	+			c.43A>G			COPZ1_uc001sfs.1_Intron|COPZ1_uc001sft.2_Intron|COPZ1_uc009znm.1_Intron|COPZ1_uc010sot.1_Intron|uc010sou.1_RNA																	0						TTATACACTCAGGCTGTGGCT	0.428000													3	175	---	---	---	---	0	0	0.150653	0	0
TMTC4	84899	broad.mit.edu	37	13	101278051	101278051	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr13:101278051G>A	uc001vou.2	-	13	1785	c.1625C>T	c.(1624-1626)GCT>GTT	p.A542V	TMTC4_uc001vot.2_Missense_Mutation_p.A561V|TMTC4_uc010tja.1_Missense_Mutation_p.A431V|TMTC4_uc001vov.1_Missense_Mutation_p.A287V|TMTC4_uc001vow.1_Missense_Mutation_p.A325V	NM_001079669	NP_001073137	Q5T4D3	TMTC4_HUMAN	transmembrane and tetratricopeptide repeat	542	TPR 3.					integral to membrane	binding			ovary(2)|breast(1)	3	all_neural(89;0.0837)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					TATTTGAACAGCCAAAGACAG	0.368000													4	50	---	---	---	---	0	0	0.150653	0	0
PRPF39	55015	broad.mit.edu	37	14	45579424	45579424	+	Splice_Site	SNP	G	A	A			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr14:45579424G>A	uc001wvz.3	+	9	1473	c.1303_splice	c.e9+1	p.G435_splice	PRPF39_uc001wvy.3_Splice_Site_p.G314_splice|PRPF39_uc010and.2_Splice_Site_p.G225_splice|PRPF39_uc001wwa.1_Splice_Site_p.G39_splice|SNORD127_uc010ane.2_5'Flank	NM_017922	NP_060392	Q86UA1	PRP39_HUMAN	PRP39 pre-mRNA processing factor 39 homolog						mRNA processing|RNA splicing	nucleus	binding			ovary(1)|breast(1)	2						GAACAGCAGGGTAAGAGTGGA	0.388000													3	40	---	---	---	---	0	0	0.115264	0	0
SYNE2	23224	broad.mit.edu	37	14	64599082	64599082	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr14:64599082G>A	uc001xgm.2	+	77	14670	c.14440G>A	c.(14440-14442)GAA>AAA	p.E4814K	SYNE2_uc001xgl.2_Missense_Mutation_p.E4814K|SYNE2_uc010apy.2_Missense_Mutation_p.E1199K|SYNE2_uc010apz.1_Missense_Mutation_p.E706K	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	4814	Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		ATTTTGGGCAGAACAAGTAAC	0.383000													3	114	---	---	---	---	0	0	0.115264	0	0
ABCA3	21	broad.mit.edu	37	16	2369769	2369769	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr16:2369769G>A	uc002cpy.1	-	8	1398	c.686C>T	c.(685-687)GCC>GTC	p.A229V	ABCA3_uc010bsk.1_Missense_Mutation_p.A229V|ABCA3_uc010bsl.1_Missense_Mutation_p.A229V	NM_001089	NP_001080	Q99758	ABCA3_HUMAN	ATP-binding cassette, sub-family A member 3	229					response to drug	integral to membrane|lamellar body|membrane fraction|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(5)|ovary(5)|central_nervous_system(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	16		Ovarian(90;0.17)				GCGTGTGGCGGCATCGGCATG	0.637000													3	144	---	---	---	---	0	0	0.184627	0	0
CENPT	80152	broad.mit.edu	37	16	67862707	67862707	+	Silent	SNP	A	G	G			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr16:67862707A>G	uc002eun.3	-	14	1869	c.1320T>C	c.(1318-1320)CAT>CAC	p.H440H	CENPT_uc002eum.3_Silent_p.H385H|CENPT_uc010vkc.1_Silent_p.H198H|CENPT_uc010vkd.1_Silent_p.H193H	NM_025082	NP_079358	Q96BT3	CENPT_HUMAN	centromere protein T	440					mitotic prometaphase	condensed chromosome kinetochore|cytosol|nucleus	DNA binding				0		Acute lymphoblastic leukemia(13;0.000299)|all_hematologic(13;0.0184)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00429)|Epithelial(162;0.019)|all cancers(182;0.124)		GCCTAGGGGGATGCCTGACCA	0.582000													3	138	---	---	---	---	0	0	0.115264	0	0
ZNF426	79088	broad.mit.edu	37	19	9640216	9640216	+	Missense_Mutation	SNP	T	C	C			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr19:9640216T>C	uc002mlq.2	-	8	769	c.505A>G	c.(505-507)AGT>GGT	p.S169G	ZNF426_uc010dws.2_Missense_Mutation_p.S131G	NM_024106	NP_077011	Q9BUY5	ZN426_HUMAN	zinc finger protein 426	169	C2H2-type 1; atypical.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TTCCCTGTACTTTGAGTTCTC	0.428000													8	78	---	---	---	---	0	0	0.047766	0	0
SLC44A2	57153	broad.mit.edu	37	19	10741777	10741777	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr19:10741777G>A	uc002mpf.2	+	5	429	c.290G>A	c.(289-291)AGC>AAC	p.S97N	SLC44A2_uc002mpe.3_Missense_Mutation_p.S95N	NM_020428	NP_065161	Q8IWA5	CTL2_HUMAN	solute carrier family 44, member 2 isoform 1	97	Extracellular (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to membrane|plasma membrane	choline transmembrane transporter activity|signal transducer activity			ovary(1)	1			Epithelial(33;8.7e-06)|all cancers(31;2.77e-05)		Choline(DB00122)	AAATGTGCCAGCCCCCTGGTT	0.448000													3	134	---	---	---	---	0	0	0.217242	0	0
ZNF878	729747	broad.mit.edu	37	19	12155673	12155673	+	Missense_Mutation	SNP	A	C	C			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr19:12155673A>C	uc002mta.1	-	5	684	c.684T>G	c.(682-684)AGT>AGG	p.S228R		NM_001080404	NP_001073873	C9JN71	ZN878_HUMAN	zinc finger protein 878	181	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0						AACTGGGAAAACTGAATGCTT	0.403000													5	339	---	---	---	---	0	0	0.217242	0	0
ZNF791	163049	broad.mit.edu	37	19	12739914	12739914	+	Missense_Mutation	SNP	A	G	G			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr19:12739914A>G	uc002mua.2	+	4	1733	c.1571A>G	c.(1570-1572)TAT>TGT	p.Y524C	ZNF791_uc010xml.1_Missense_Mutation_p.Y492C|ZNF791_uc010dyu.1_Missense_Mutation_p.Y415C|ZNF791_uc010xmm.1_Missense_Mutation_p.Y415C	NM_153358	NP_699189	Q3KP31	ZN791_HUMAN	zinc finger protein 791	524	C2H2-type 16.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						GAGAAACCCTATAAATGTAAA	0.388000													9	99	---	---	---	---	0	0	0.080935	0	0
TMEM38A	79041	broad.mit.edu	37	19	16799119	16799119	+	Silent	SNP	C	T	T			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr19:16799119C>T	uc002nes.2	+	6	928	c.837C>T	c.(835-837)CCC>CCT	p.P279P		NM_024074	NP_076979	Q9H6F2	TM38A_HUMAN	transmembrane protein 38A	279	Cytoplasmic (Potential).					integral to membrane|nuclear membrane|sarcoplasmic reticulum membrane	potassium channel activity			central_nervous_system(2)|ovary(1)	3						CGGCCATGCCCGCCAAGTCCA	0.657000													25	75	---	---	---	---	0	0	0.091800	0	0
LBH	81606	broad.mit.edu	37	2	30457303	30457303	+	Missense_Mutation	SNP	A	G	G			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr2:30457303A>G	uc002rne.2	+	2	267	c.59A>G	c.(58-60)GAG>GGG	p.E20G		NM_030915	NP_112177	Q53QV2	LBH_HUMAN	limb bud and heart development homolog	20					multicellular organismal development|transcription, DNA-dependent	cytoplasm|nucleolus					0	Acute lymphoblastic leukemia(172;0.155)					AAGATGACTGAGGTGATGATG	0.537000													3	164	---	---	---	---	0	0	0.115264	0	0
MMP24	10893	broad.mit.edu	37	20	33839758	33839758	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr20:33839758G>A	uc002xbu.2	+	3	449	c.446G>A	c.(445-447)CGT>CAT	p.R149H	EDEM2_uc010zuv.1_Intron	NM_006690	NP_006681	Q9Y5R2	MMP24_HUMAN	matrix metalloproteinase 24 preproprotein	149	Extracellular (Potential).|Poly-Arg.				proteolysis	integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding				0			BRCA - Breast invasive adenocarcinoma(18;0.00252)			CACTTAAGCCGTAGGCGGAGA	0.547000													4	188	---	---	---	---	0	0	0.217242	0	0
ZNF335	63925	broad.mit.edu	37	20	44581287	44581287	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr20:44581287C>T	uc002xqw.2	-	19	2887	c.2764G>A	c.(2764-2766)GGC>AGC	p.G922S	ZNF335_uc002xqv.2_Missense_Mutation_p.G34S|ZNF335_uc010zxk.1_Missense_Mutation_p.G767S	NM_022095	NP_071378	Q9H4Z2	ZN335_HUMAN	zinc finger protein 335	922					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)|ovary(1)	4		Myeloproliferative disorder(115;0.0122)				TAGTGGGTGCCAGCTTCTTTT	0.587000													53	166	---	---	---	---	0	0	0.139131	0	0
COL20A1	57642	broad.mit.edu	37	20	61951642	61951642	+	Splice_Site	SNP	G	A	A			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr20:61951642G>A	uc011aau.1	+	25	3176	c.3076_splice	c.e25-1	p.F1026_splice	COL20A1_uc011aav.1_Splice_Site_p.F847_splice	NM_020882	NP_065933	Q9P218	COKA1_HUMAN	collagen, type XX, alpha 1						cell adhesion	collagen|extracellular space	structural molecule activity			central_nervous_system(1)	1	all_cancers(38;1.39e-10)					CTGCGTTGCAGTTTCAGCTCC	0.701000													3	98	---	---	---	---	0	0	0.150653	0	0
TTC3	7267	broad.mit.edu	37	21	38536445	38536445	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr21:38536445G>A	uc002yvz.2	+	32	3368	c.3263G>A	c.(3262-3264)AGT>AAT	p.S1088N	TTC3_uc011aee.1_Missense_Mutation_p.S778N|TTC3_uc002ywa.2_Missense_Mutation_p.S1088N|TTC3_uc002ywb.2_Missense_Mutation_p.S1088N|TTC3_uc010gnf.2_Missense_Mutation_p.S853N|TTC3_uc002ywc.2_Missense_Mutation_p.S778N|TTC3_uc002ywd.1_Missense_Mutation_p.S152N	NM_001001894	NP_001001894	P53804	TTC3_HUMAN	tetratricopeptide repeat domain 3	1088					protein K48-linked ubiquitination|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			skin(3)|ovary(2)|lung(2)|breast(2)	9		Myeloproliferative disorder(46;0.0412)				GACCAACACAGTAACGAATAT	0.398000													3	93	---	---	---	---	0	0	0.115264	0	0
SREBF2	6721	broad.mit.edu	37	22	42262982	42262982	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr22:42262982G>A	uc003bbi.2	+	2	405	c.236G>A	c.(235-237)AGC>AAC	p.S79N	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron	NM_004599	NP_004590	Q12772	SRBP2_HUMAN	sterol regulatory element-binding transcription	79	Gly/Pro/Ser-rich.|Cytoplasmic (Potential).				cholesterol metabolic process	ER to Golgi transport vesicle membrane|Golgi membrane|nucleus|SREBP-SCAP-Insig complex	protein C-terminus binding			breast(2)|ovary(1)|central_nervous_system(1)	4						ggcaggggcagcagcagcGGA	0.398000													3	88	---	---	---	---	0	0	0.150653	0	0
MAPK8IP2	23542	broad.mit.edu	37	22	51044095	51044095	+	Silent	SNP	G	A	A			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr22:51044095G>A	uc003bmx.2	+	8	2064	c.1947G>A	c.(1945-1947)ACG>ACA	p.T649T	MAPK8IP2_uc003bmy.2_Silent_p.T622T|MAPK8IP2_uc011asc.1_Silent_p.T3T	NM_012324	NP_036456	Q13387	JIP2_HUMAN	mitogen-activated protein kinase 8 interacting	649	SH3.				behavioral fear response|dendrite morphogenesis|MAPKKK cascade|nonassociative learning|positive regulation of anti-apoptosis|regulation of excitatory postsynaptic membrane potential|regulation of JNK cascade|regulation of receptor activity|regulation of synaptic transmission, glutamatergic|signal complex assembly|social behavior	cytoplasm|postsynaptic density	beta-amyloid binding|kinesin binding|MAP-kinase scaffold activity|protein kinase activator activity|protein kinase binding			large_intestine(2)|central_nervous_system(1)	3		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		OV - Ovarian serous cystadenocarcinoma(4;1.28e-70)|Epithelial(4;3.46e-65)|GBM - Glioblastoma multiforme(4;4.83e-06)|Lung(4;0.125)|BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		ACATGCGCACGGGGGAGCGCG	0.652000													3	58	---	---	---	---	0	0	0.115264	0	0
EIF2B5	8893	broad.mit.edu	37	3	183856019	183856019	+	Silent	SNP	C	T	T			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr3:183856019C>T	uc003fmp.2	+	5	1114	c.750C>T	c.(748-750)AGC>AGT	p.S250S	EIF2B5_uc003fmq.2_5'UTR	NM_003907	NP_003898	Q13144	EI2BE_HUMAN	eukaryotic translation initiation factor 2B,	250					astrocyte development|myelination|negative regulation of translational initiation in response to stress|oligodendrocyte development|ovarian follicle development|positive regulation of translational initiation|response to glucose stimulus|response to heat|response to peptide hormone stimulus|RNA metabolic process	cytosol|eukaryotic translation initiation factor 2B complex|nucleus	guanyl-nucleotide exchange factor activity|transferase activity|translation initiation factor activity|translation initiation factor binding			ovary(5)	5	all_cancers(143;7.59e-11)|Ovarian(172;0.0303)		Epithelial(37;7.06e-36)|OV - Ovarian serous cystadenocarcinoma(80;3.11e-22)			GTCATATCAGCATCTGTTCTC	0.468000													9	96	---	---	---	---	0	0	0.058154	0	0
SDHAP2	727956	broad.mit.edu	37	3	195400841	195400841	+	Missense_Mutation	SNP	C	A	A	rs7615369	by1000genomes	TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr3:195400841C>A	uc003fuw.2	+	9	1331	c.137C>A	c.(136-138)GCA>GAA	p.A46E	SDHAP2_uc011btb.1_Silent_p.R193R|SDHAP2_uc011btc.1_RNA|SDHAP2_uc003fuv.2_RNA					SubName: Full=cDNA FLJ16373 fis, clone THYMU3000269, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial (EC 1.3.5.1);												0						CTGAGCATCGCAGAGTCGTGC	0.502000													4	39	---	---	---	---	0.000673444	0.000704055	0.069234	1	0
SDHAP2	727956	broad.mit.edu	37	3	195400848	195400848	+	Silent	SNP	G	A	A	rs7635190	by1000genomes	TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr3:195400848G>A	uc003fuw.2	+	9	1338	c.144G>A	c.(142-144)TCG>TCA	p.S48S	SDHAP2_uc011btb.1_Missense_Mutation_p.V196M|SDHAP2_uc011btc.1_RNA|SDHAP2_uc003fuv.2_RNA					SubName: Full=cDNA FLJ16373 fis, clone THYMU3000269, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial (EC 1.3.5.1);												0						TCGCAGAGTCGTGCAGGCCTG	0.478000													4	33	---	---	---	---	0	0	0.069234	0	0
MOG	4340	broad.mit.edu	37	6	29627259	29627259	+	Silent	SNP	G	A	A			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr6:29627259G>A	uc003nnf.2	+	2	430	c.252G>A	c.(250-252)AAG>AAA	p.K84K	MOG_uc003qzk.1_Silent_p.K84K|MOG_uc010kle.1_Intron|MOG_uc010klf.1_Intron|MOG_uc003nmy.1_Silent_p.K84K|MOG_uc003nmz.2_Silent_p.K84K|MOG_uc011dlt.1_Silent_p.K14K|MOG_uc003nna.2_Intron|MOG_uc011dlu.1_Intron|MOG_uc011dlv.1_Intron|MOG_uc003nnd.2_Silent_p.K84K|MOG_uc003nne.2_Silent_p.K84K|MOG_uc003nng.2_Silent_p.K84K|MOG_uc003nnh.2_Silent_p.K84K|MOG_uc003nni.2_Silent_p.K84K|MOG_uc003nnj.2_Silent_p.K84K|MOG_uc003nnk.2_Silent_p.K84K	NM_206809	NP_996532	Q16653	MOG_HUMAN	myelin oligodendrocyte glycoprotein isoform	84	Ig-like V-type.|Extracellular (Potential).				cell adhesion|central nervous system development|positive regulation of MyD88-dependent toll-like receptor signaling pathway	integral to membrane|plasma membrane				ovary(1)	1						GAAATGGCAAGGACCAAGATG	0.547000													3	139	---	---	---	---	0	0	0.115264	0	0
IMPG1	3617	broad.mit.edu	37	6	76751728	76751728	+	Silent	SNP	G	A	A			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr6:76751728G>A	uc003pik.1	-	2	313	c.183C>T	c.(181-183)TTC>TTT	p.F61F		NM_001563	NP_001554	Q17R60	IMPG1_HUMAN	interphotoreceptor matrix proteoglycan 1	61					visual perception	proteinaceous extracellular matrix	extracellular matrix structural constituent|receptor activity			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(125;0.0418)|all_hematologic(105;0.222)				TTGCCAAATCGAATATTCGTC	0.368000													20	134	---	---	---	---	0	0	0.219247	0	0
VTA1	51534	broad.mit.edu	37	6	142468447	142468447	+	Missense_Mutation	SNP	C	A	A			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr6:142468447C>A	uc003qiw.2	+	1	38	c.23C>A	c.(22-24)CCC>CAC	p.P8H	VTA1_uc011edt.1_RNA|VTA1_uc011edu.1_5'UTR	NM_016485	NP_057569	Q9NP79	VTA1_HUMAN	Vps20-associated 1 homolog	8	Interaction with CHMP5.|Interaction with IST1.				cellular membrane organization|endosome transport|protein transport	cytosol|endosome membrane	protein binding				0	Breast(32;0.155)			OV - Ovarian serous cystadenocarcinoma(155;1.34e-05)|GBM - Glioblastoma multiforme(68;0.00182)		GCACCGCTGCCCCCGCTCCCC	0.612000											OREG0017699	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	88	---	---	---	---	5.9392e-07	6.50484e-07	0.217242	1	0
KIF25	3834	broad.mit.edu	37	6	168430272	168430272	+	Missense_Mutation	SNP	T	A	A			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr6:168430272T>A	uc003qwk.1	+	2	269	c.7T>A	c.(7-9)TGG>AGG	p.W3R	KIF25_uc010kkt.1_RNA|KIF25_uc003qwl.1_Missense_Mutation_p.W3R	NM_030615	NP_085118	Q9UIL4	KIF25_HUMAN	kinesin family member 25 isoform 1	3	Kinesin-motor.				microtubule-based movement|mitotic sister chromatid segregation	cytoplasm|kinesin complex|microtubule	ATP binding|microtubule motor activity	p.W3C(1)		ovary(1)|pancreas(1)	2		Breast(66;1.07e-05)|Ovarian(120;0.0728)		Epithelial(4;7.7e-30)|OV - Ovarian serous cystadenocarcinoma(33;5.82e-22)|BRCA - Breast invasive adenocarcinoma(4;1.38e-10)|GBM - Glioblastoma multiforme(31;0.000756)		CCAGATGACATGGACCTCAGG	0.602000													4	221	---	---	---	---	0	0	0.150653	0	0
KIAA1529	57653	broad.mit.edu	37	9	100092841	100092841	+	Missense_Mutation	SNP	C	G	G			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr9:100092841C>G	uc011lut.1	+	30	3388	c.2615C>G	c.(2614-2616)TCT>TGT	p.S872C	KIAA1529_uc004axe.1_Missense_Mutation_p.S872C|KIAA1529_uc004axg.1_Missense_Mutation_p.S733C|KIAA1529_uc004axh.1_RNA|KIAA1529_uc011luw.1_Missense_Mutation_p.S57C|KIAA1529_uc011lus.1_Missense_Mutation_p.S690C|KIAA1529_uc010msm.1_RNA|KIAA1529_uc004axf.2_Missense_Mutation_p.S733C|KIAA1529_uc011luv.1_Missense_Mutation_p.S730C	NM_020893	NP_065944			hypothetical protein LOC57653											ovary(4)|large_intestine(2)|skin(1)	7		Acute lymphoblastic leukemia(62;0.154)				AAAGAAGGCTCTATTCAGGGA	0.433000													13	27	---	---	---	---	0	0	0.105934	0	0
MAP7D2	256714	broad.mit.edu	37	X	20044031	20044031	+	Silent	SNP	C	T	T			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chrX:20044031C>T	uc004czr.1	-	8	943	c.924G>A	c.(922-924)ACG>ACA	p.T308T	MAP7D2_uc004czq.1_Silent_p.T193T|MAP7D2_uc011mji.1_Silent_p.T256T|MAP7D2_uc010nfo.1_Silent_p.T349T|MAP7D2_uc011mjj.1_Silent_p.T263T	NM_152780	NP_689993	Q96T17	MA7D2_HUMAN	MAP7 domain containing 2	308										ovary(2)|breast(1)	3						AGGGAGGTTTCGTTGTCTTTG	0.493000													37	252	---	---	---	---	0	0	0.139131	0	0
AMOT	154796	broad.mit.edu	37	X	112058796	112058796	+	Silent	SNP	C	T	T			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chrX:112058796C>T	uc004epr.2	-	2	1182	c.1182G>A	c.(1180-1182)CAG>CAA	p.Q394Q	AMOT_uc004eps.2_5'UTR|AMOT_uc004ept.1_Silent_p.Q394Q	NM_001113490	NP_001106962	Q4VCS5	AMOT_HUMAN	angiomotin isoform 1	394					actin cytoskeleton organization|cell-cell junction assembly|negative regulation of angiogenesis|negative regulation of vascular permeability|positive regulation of blood vessel endothelial cell migration|positive regulation of cell size|positive regulation of stress fiber assembly|regulation of cell migration	actin filament|cell surface|cytoplasm|endocytic vesicle|external side of plasma membrane|integral to membrane|lamellipodium|ruffle|stress fiber|tight junction|tight junction	angiostatin binding|protein binding|receptor activity			ovary(1)	1						gctgctgctgctgttgttggt	0.338000													3	36	---	---	---	---	0	0	0.115264	0	0
PVRL4	81607	broad.mit.edu	37	1	161059028	161059030	+	In_Frame_Del	DEL	AGC	-	-			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr1:161059028_161059030delAGC	uc001fxo.2	-	1	356_358	c.57_59delGCT	c.(55-60)CTGCTA>CTA	p.19_20LL>L		NM_030916	NP_112178	Q96NY8	PVRL4_HUMAN	poliovirus receptor-related 4 precursor	19_20					adherens junction organization|cell adhesion|cell junction assembly	adherens junction|extracellular region|integral to membrane				ovary(2)	2	all_cancers(52;8.9e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00165)			TGCCAGCAGTAGCAGCAGCAGCA	0.512													7	289	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	130262780	130262780	+	IGR	DEL	A	-	-			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr10:130262780delA								MKI67 (338312 upstream) : None (None downstream)																							ctcctcctccaccatcctccc	0.000													6	10	---	---	---	---					
TM7SF2	7108	broad.mit.edu	37	11	64879505	64879506	+	Frame_Shift_Del	DEL	CC	-	-			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr11:64879505_64879506delCC	uc001oct.2	+	1	165_166	c.18_19delCC	c.(16-21)GGCCCCfs	p.G6fs	TM7SF2_uc010rny.1_5'UTR|TM7SF2_uc001ocu.2_Frame_Shift_Del_p.G6fs|TM7SF2_uc001ocv.2_5'UTR	NM_003273	NP_003264	O76062	ERG24_HUMAN	transmembrane 7 superfamily member 2	6_7					cholesterol biosynthetic process	endoplasmic reticulum membrane|integral to plasma membrane	delta14-sterol reductase activity			ovary(1)	1						CCACTCAGGGCCCCCGGGCCCC	0.639													6	12	---	---	---	---					
PRPF40B	25766	broad.mit.edu	37	12	50025258	50025258	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr12:50025258delC	uc001rur.1	+	2	157	c.93delC	c.(91-93)ATCfs	p.I31fs	PRPF40B_uc001rup.1_Frame_Shift_Del_p.I53fs|PRPF40B_uc001ruq.1_Frame_Shift_Del_p.I25fs|PRPF40B_uc001rus.1_5'Flank	NM_001031698	NP_001026868	Q6NWY9	PR40B_HUMAN	Huntingtin interacting protein C isoform 1	31	Pro-rich.				mRNA processing|RNA splicing	nuclear speck				skin(2)|ovary(1)|pancreas(1)|kidney(1)	5						CACCAGCTATCCCCCCCATGC	0.607													7	363	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	80650276	80650277	+	IGR	INS	-	CAAA	CAAA	rs147846753	by1000genomes	TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr12:80650276_80650277insCAAA								PPP1R12A (321041 upstream) : PTPRQ (187849 downstream)																							TTTCTTTACATcaaacaaacaa	0.322													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	111250769	111250771	+	IGR	DEL	TCC	-	-			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr12:111250769_111250771delTCC								PPP1CC (70012 upstream) : CCDC63 (34040 downstream)																							ttctatctcttcctcctcctcct	0.148													2	4	---	---	---	---					
MIR620	693205	broad.mit.edu	37	12	116586415	116586420	+	RNA	DEL	TATATA	-	-	rs10549054		TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr12:116586415_116586420delTATATA	hsa-mir-620|MI0003634	-			c.40_45delTATATA			MED13L_uc001tvw.2_Intron																	0						tggagatatctatatatatatatata	0.199													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	20563408	20563417	+	IGR	DEL	CCTCTCCCTT	-	-			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr15:20563408_20563417delCCTCTCCCTT								None (None upstream) : GOLGA6L6 (173677 downstream)																							CCTCCCAGAGcctctcccttcctctccctt	0.457													3	4	---	---	---	---					
SPTBN5	51332	broad.mit.edu	37	15	42159282	42159282	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr15:42159282delG	uc001zos.2	-	36	6583	c.6250delC	c.(6250-6252)CGGfs	p.R2084fs	hsa-mir-4310|MI0015840_5'Flank	NM_016642	NP_057726	Q9NRC6	SPTN5_HUMAN	spectrin, beta, non-erythrocytic 5	2119	Spectrin 17.				actin cytoskeleton organization|actin filament capping|axon guidance	cytosol|membrane|spectrin				ovary(1)|central_nervous_system(1)	2		all_cancers(109;1.84e-17)|all_epithelial(112;1.12e-15)|Lung NSC(122;7.6e-10)|all_lung(180;4.15e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		all cancers(2;4.33e-34)|Epithelial(2;1.72e-25)|OV - Ovarian serous cystadenocarcinoma(18;8.32e-20)|GBM - Glioblastoma multiforme(94;4.69e-07)|Colorectal(2;0.00104)|COAD - Colon adenocarcinoma(120;0.0405)|READ - Rectum adenocarcinoma(92;0.0908)		TCCCGCACCCGGGGGCGCCGG	0.731													2	4	---	---	---	---					
ITGB4	3691	broad.mit.edu	37	17	73732157	73732158	+	Frame_Shift_Del	DEL	GT	-	-	rs121912463		TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr17:73732157_73732158delGT	uc002jpg.2	+	14	1870_1871	c.1683_1684delGT	c.(1681-1686)CAGTGTfs	p.Q561fs	ITGB4_uc002jph.2_Frame_Shift_Del_p.Q561fs|ITGB4_uc010dgo.2_Frame_Shift_Del_p.Q561fs|ITGB4_uc002jpi.3_Frame_Shift_Del_p.Q561fs|ITGB4_uc010dgp.1_Frame_Shift_Del_p.Q561fs|ITGB4_uc002jpj.2_Frame_Shift_Del_p.Q561fs|ITGB4_uc010wsh.1_Frame_Shift_Del_p.Q116fs	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor	561_562	III.|Extracellular (Potential).|Cysteine-rich tandem repeats.		C -> R (in EB-PA; mild form).		cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			CCATGGGCCAGTGTGTGTGTGA	0.604													8	401	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	80298263	80298264	+	IGR	INS	-	C	C	rs138356384	by1000genomes	TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr17:80298263_80298264insC								SECTM1 (6342 upstream) : TEX19 (18860 downstream)																							ctccctctgtgcctcttcccct	0.158													3	3	---	---	---	---					
LRPPRC	10128	broad.mit.edu	37	2	44145165	44145165	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr2:44145165delT	uc002rtr.2	-	29	3205	c.3147delA	c.(3145-3147)AAAfs	p.K1049fs	LRPPRC_uc010yob.1_Frame_Shift_Del_p.K949fs	NM_133259	NP_573566	P42704	LPPRC_HUMAN	leucine-rich PPR motif-containing protein	1049	PPR 15.				mitochondrion transport along microtubule|mRNA transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	condensed nuclear chromosome|cytoskeleton|mitochondrial nucleoid|nuclear inner membrane|nuclear outer membrane|nucleoplasm|perinuclear region of cytoplasm	beta-tubulin binding|microtubule binding|RNA binding			ovary(2)|skin(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				TGTGCTTGCCTTTTTTTTGGT	0.453													8	59	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	36072108	36072108	+	IGR	DEL	C	-	-			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr20:36072108delC								SRC (38289 upstream) : BLCAP (73712 downstream)																							TCCTGCCCTGCCCCCCACCAA	0.562													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	11180762	11180762	+	IGR	DEL	T	-	-	rs146742149		TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr21:11180762delT								BAGE (81825 upstream) : None (None downstream)																							aACTAACTTCTTTTTTTTTTT	0.169													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	81115695	81115696	+	IGR	DEL	CT	-	-	rs147076463	by1000genomes	TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr3:81115695_81115696delCT								None (None upstream) : GBE1 (423154 downstream)																							cctcctcctcctctctctctct	0.000													4	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	169525973	169525973	+	IGR	DEL	G	-	-			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr5:169525973delG								DOCK2 (15589 upstream) : FOXI1 (6944 downstream)																							agCTCTTTATGGAGCAGACAC	0.214													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	57659470	57659471	+	IGR	DEL	TA	-	-	rs79867563	by1000genomes	TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr7:57659470_57659471delTA								ZNF716 (126205 upstream) : None (None downstream)																							GCGTTGATCTTACAGTCTGGTG	0.371													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	142953416	142953418	+	IGR	DEL	GGT	-	-			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr8:142953416_142953418delGGT								MIR1302-7 (85742 upstream) : NCRNA00051 (326299 downstream)																							gtcaggtgagggtggtggtggtg	0.000													2	4	---	---	---	---					
TUSC1	286319	broad.mit.edu	37	9	25678177	25678178	+	In_Frame_Ins	INS	-	CGC	CGC			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr9:25678177_25678178insCGC	uc003zpx.2	-	1	679_680	c.142_143insGCG	c.(142-144)GTG>GGCGTG	p.47_48insG		NM_001004125	NP_001004125	Q2TAM9	TUSC1_HUMAN	tumor suppressor candidate 1	47_48	Gly-rich.										0	all_hematologic(1;0.197)	all_neural(3;5.42e-18)|Glioma(3;5.54e-17)		GBM - Glioblastoma multiforme(1;1.51e-108)|Lung(42;2.88e-14)|LUSC - Lung squamous cell carcinoma(38;3.16e-11)		tcgccagcccacgccgccgccg	0.525													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	44084401	44084402	+	IGR	INS	-	ATCTT	ATCTT			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr9:44084401_44084402insATCTT								FAM75A6 (453671 upstream) : FAM27C (905834 downstream)																							TAAAGACTATATATAAAAATAA	0.277													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	68413605	68413606	+	RNA	DEL	CT	-	-			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chr9:68413605_68413606delCT	uc004aex.2	+	1		c.160_161delCT								Homo sapiens mRNA; cDNA DKFZp564N0763 (from clone DKFZp564N0763).																		TTTGCTGAAACTCTGGGGTTGA	0.609													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	70183187	70183188	+	IGR	DEL	AA	-	-			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chrX:70183187_70183188delAA								SLC7A3 (32228 upstream) : SNX12 (26176 downstream)																							TTCATATGCCAAAAAAAAAAAA	0.381													5	9	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	140233410	140233411	+	IGR	INS	-	AAAAT	AAAAT			TCGA-EL-A3T0-01A-22D-A22D-08	TCGA-EL-A3T0-11A-12D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	54426b1a-e0d3-4d8e-9e81-2d8e6b153b22	93f3e9bc-7221-4442-af55-1004bdf61842	g.chrX:140233410_140233411insAAAAT								SPANXB2 (147540 upstream) : LDOC1 (36529 downstream)																							GTTTATGTTAAaaaataaaata	0.178													5	11	---	---	---	---					
