Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
NOTCH2	4853	broad.mit.edu	37	1	120461954	120461954	+	Missense_Mutation	SNP	T	G	G			TCGA-EM-A22K-01A-11D-A17V-08	TCGA-EM-A22K-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	04cb54da-f53f-4bdd-9f67-42bf9140da17	b31f64cf-a428-415f-8380-0eb6d368cfd2	g.chr1:120461954T>G	uc001eik.2	-	31	6018	c.5762A>C	c.(5761-5763)GAT>GCT	p.D1921A		NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	1921	ANK 3.|Cytoplasmic (Potential).				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		ACCTTGGGCATCAGCTGCCAC	0.413			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				3	83	---	---	---	---	0	0	0.004672	0	0
XPNPEP1	7511	broad.mit.edu	37	10	111642324	111642324	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A22K-01A-11D-A17V-08	TCGA-EM-A22K-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	04cb54da-f53f-4bdd-9f67-42bf9140da17	b31f64cf-a428-415f-8380-0eb6d368cfd2	g.chr10:111642324C>T	uc001kyp.1	-	10	918	c.778G>A	c.(778-780)GAA>AAA	p.E260K	XPNPEP1_uc009xxt.1_Missense_Mutation_p.E303K|XPNPEP1_uc001kyq.1_Missense_Mutation_p.E189K|XPNPEP1_uc010qrb.1_Missense_Mutation_p.E303K|XPNPEP1_uc010qra.1_Missense_Mutation_p.E27K	NM_020383	NP_065116	Q9NQW7	XPP1_HUMAN	X-prolyl aminopeptidase (aminopeptidase P) 1,	260					bradykinin catabolic process|proteolysis		manganese ion binding|metalloaminopeptidase activity|protein homodimerization activity			ovary(3)|pancreas(1)	4		Breast(234;0.174)		Epithelial(162;1.64e-05)|all cancers(201;0.000564)|BRCA - Breast invasive adenocarcinoma(275;0.0721)		ATCCTGTATTCGGCTTCCAGA	0.572													36	82	---	---	---	---	0	0	0.004878	0	0
HRAS	3265	broad.mit.edu	37	11	533875	533875	+	Missense_Mutation	SNP	G	T	T	rs28933406		TCGA-EM-A22K-01A-11D-A17V-08	TCGA-EM-A22K-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	04cb54da-f53f-4bdd-9f67-42bf9140da17	b31f64cf-a428-415f-8380-0eb6d368cfd2	g.chr11:533875G>T	uc001lpv.2	-	3	369	c.181C>A	c.(181-183)CAG>AAG	p.Q61K	HRAS_uc010qvw.1_Missense_Mutation_p.Q61K|HRAS_uc010qvx.1_Missense_Mutation_p.Q61K|HRAS_uc010qvy.1_RNA	NM_005343	NP_005334	P01112	RASH_HUMAN	v-Ha-ras Harvey rat sarcoma viral oncogene	61	GTP.		Q -> L (in melanoma; strongly reduced GTP hydrolysis in the presence of RAF1; increases transformation of cultured cell lines).	Q->V: Strongly increased transformation of cultured cell lines.|Q->I: Moderately increased transformation of cultured cell lines.	activation of MAPKK activity|axon guidance|blood coagulation|cell cycle arrest|cellular senescence|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|mitotic cell cycle G1/S transition checkpoint|negative regulation of cell proliferation|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of DNA replication|positive regulation of epithelial cell proliferation|Ras protein signal transduction|synaptic transmission	cytosol|Golgi membrane|plasma membrane	GTP binding|GTPase activity|protein C-terminus binding	p.Q61R(112)|p.Q61L(91)|p.Q61K(39)|p.Q61H(20)|p.Q61P(3)|p.Q61Q(1)|p.Q61E(1)		urinary_tract(174)|thyroid(155)|skin(126)|upper_aerodigestive_tract(112)|soft_tissue(37)|prostate(29)|salivary_gland(24)|cervix(23)|stomach(14)|pituitary(10)|lung(9)|haematopoietic_and_lymphoid_tissue(9)|breast(6)|testis(5)|endometrium(4)|bone(3)|large_intestine(2)|oesophagus(2)|penis(2)|kidney(1)|adrenal_gland(1)|thymus(1)	749		all_cancers(49;4.37e-09)|all_epithelial(84;2.09e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;7.63e-28)|Epithelial(43;7.29e-27)|OV - Ovarian serous cystadenocarcinoma(40;7.15e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0375)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Sulindac(DB00605)	TACTCCTCCTGGCCGGCGGTA	0.597		6	Mis		infrequent sarcomas|rare other types	rhadomyosarcoma|ganglioneuroblastoma|bladder			Costello_syndrome	HNSCC(11;0.0054)			47	81	---	---	---	---	3.68337e-26	8.91764e-26	0.014410	1	0
LOC650368	650368	broad.mit.edu	37	11	3427845	3427845	+	RNA	SNP	C	T	T			TCGA-EM-A22K-01A-11D-A17V-08	TCGA-EM-A22K-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	04cb54da-f53f-4bdd-9f67-42bf9140da17	b31f64cf-a428-415f-8380-0eb6d368cfd2	g.chr11:3427845C>T	uc010qxs.1	+	9		c.838C>T			LOC650368_uc001lxx.2_RNA|LOC650368_uc001lxy.2_RNA	NR_024248				Homo sapiens cDNA FLJ41654 fis, clone FEBRA2025463, weakly  similar to Homo sapiens HMT-1 mRNA for beta-1,4 mannosyltransferase.												0						CTTCAAGTGGCAGGAGCAGAA	0.587													7	53	---	---	---	---	0	0	0.003080	0	0
AKAP11	11215	broad.mit.edu	37	13	42874704	42874704	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EM-A22K-01A-11D-A17V-08	TCGA-EM-A22K-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	04cb54da-f53f-4bdd-9f67-42bf9140da17	b31f64cf-a428-415f-8380-0eb6d368cfd2	g.chr13:42874704A>T	uc001uys.1	+	8	1997	c.1822A>T	c.(1822-1824)AAA>TAA	p.K608*		NM_016248	NP_057332	Q9UKA4	AKA11_HUMAN	A-kinase anchor protein 11	608					intracellular protein kinase cascade	microtubule organizing center	protein kinase A binding|protein phosphatase 1 binding			ovary(1)|central_nervous_system(1)	2		Lung NSC(96;1.86e-05)|Prostate(109;0.0165)|Lung SC(185;0.0262)|Breast(139;0.0707)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000365)|GBM - Glioblastoma multiforme(144;0.00116)|BRCA - Breast invasive adenocarcinoma(63;0.19)		ATTTTCACTAAAAGAACGTGC	0.383													5	42	---	---	---	---	0	0	0.000602	0	0
DLGAP5	9787	broad.mit.edu	37	14	55637441	55637441	+	Missense_Mutation	SNP	C	G	G			TCGA-EM-A22K-01A-11D-A17V-08	TCGA-EM-A22K-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	04cb54da-f53f-4bdd-9f67-42bf9140da17	b31f64cf-a428-415f-8380-0eb6d368cfd2	g.chr14:55637441C>G	uc001xbs.2	-	11	1583	c.1366G>C	c.(1366-1368)GAA>CAA	p.E456Q	DLGAP5_uc001xbt.2_Missense_Mutation_p.E456Q	NM_014750	NP_055565	Q15398	DLGP5_HUMAN	discs large homolog 7 isoform a	456					cell proliferation|cell-cell signaling|mitotic chromosome movement towards spindle pole|positive regulation of mitotic metaphase/anaphase transition	nucleus|spindle pole centrosome	phosphoprotein phosphatase activity|protein binding			ovary(1)|skin(1)	2						ATGTCCAATTCAAGTTTCCTG	0.333													28	40	---	---	---	---	0	0	0.009535	0	0
EIF2AK4	440275	broad.mit.edu	37	15	40308702	40308702	+	Splice_Site	SNP	G	A	A			TCGA-EM-A22K-01A-11D-A17V-08	TCGA-EM-A22K-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	04cb54da-f53f-4bdd-9f67-42bf9140da17	b31f64cf-a428-415f-8380-0eb6d368cfd2	g.chr15:40308702G>A	uc001zkm.1	+	28	3810	c.3760_splice	c.e28-1	p.L1254_splice	EIF2AK4_uc010bbj.1_Splice_Site_p.L955_splice|EIF2AK4_uc001zkn.1_Splice_Site_p.L354_splice|EIF2AK4_uc001zko.1_Intron|EIF2AK4_uc010bbk.1_Splice_Site	NM_001013703	NP_001013725	Q9P2K8	E2AK4_HUMAN	eukaryotic translation initiation factor 2 alpha						translation	cytosolic ribosome	aminoacyl-tRNA ligase activity|ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|protein homodimerization activity			lung(2)|stomach(1)|skin(1)	4		all_cancers(109;1.05e-19)|all_epithelial(112;4.38e-17)|Lung NSC(122;1.09e-12)|all_lung(180;3.56e-11)|Melanoma(134;0.0575)|Ovarian(310;0.0826)|Colorectal(260;0.119)		GBM - Glioblastoma multiforme(113;5.31e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0616)		TTGCTTTCCAGCTGTGTCGAC	0.473													3	49	---	---	---	---	0	0	0.009096	0	0
IGDCC4	57722	broad.mit.edu	37	15	65677333	65677333	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EM-A22K-01A-11D-A17V-08	TCGA-EM-A22K-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	04cb54da-f53f-4bdd-9f67-42bf9140da17	b31f64cf-a428-415f-8380-0eb6d368cfd2	g.chr15:65677333G>A	uc002aou.1	-	19	3511	c.3301C>T	c.(3301-3303)CAG>TAG	p.Q1101*	IGDCC4_uc002aot.1_Nonsense_Mutation_p.Q689*	NM_020962	NP_066013	Q8TDY8	IGDC4_HUMAN	immunoglobulin superfamily, DCC subclass, member	1101	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(1)|pancreas(1)|skin(1)	3						AACAGCGTCTGCCCAGTTCCA	0.662											OREG0023195	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	129	---	---	---	---	0	0	0.001168	0	0
NFAT5	10725	broad.mit.edu	37	16	69729160	69729160	+	Silent	SNP	A	G	G			TCGA-EM-A22K-01A-11D-A17V-08	TCGA-EM-A22K-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	04cb54da-f53f-4bdd-9f67-42bf9140da17	b31f64cf-a428-415f-8380-0eb6d368cfd2	g.chr16:69729160A>G	uc002exm.1	+	13	5690	c.4482A>G	c.(4480-4482)CAA>CAG	p.Q1494Q	NFAT5_uc002exi.2_Silent_p.Q1418Q|NFAT5_uc002exj.1_Silent_p.Q1418Q|NFAT5_uc002exk.1_Silent_p.Q1418Q|NFAT5_uc002exl.1_Silent_p.Q1512Q|NFAT5_uc002exn.1_Silent_p.Q1511Q|NFAT5_uc002exo.1_Intron	NM_006599	NP_006590	O94916	NFAT5_HUMAN	nuclear factor of activated T-cells 5 isoform c	1494					excretion|signal transduction|transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0						TTTCTCAGCAAATGCCAGAGA	0.463													14	72	---	---	---	---	0	0	0.001855	0	0
Unknown	0	broad.mit.edu	37	16	70268158	70268158	+	RNA	SNP	A	C	C			TCGA-EM-A22K-01A-11D-A17V-08	TCGA-EM-A22K-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	04cb54da-f53f-4bdd-9f67-42bf9140da17	b31f64cf-a428-415f-8380-0eb6d368cfd2	g.chr16:70268158A>C	uc010cfp.1	-	3		c.257T>G								Homo sapiens cDNA, FLJ98908.																		TTCTTCATTAAAACAGCTACT	0.333													2	6	---	---	---	---	0	0	0.004672	0	0
FLJ36000	284124	broad.mit.edu	37	17	21904069	21904069	+	RNA	SNP	C	G	G			TCGA-EM-A22K-01A-11D-A17V-08	TCGA-EM-A22K-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	04cb54da-f53f-4bdd-9f67-42bf9140da17	b31f64cf-a428-415f-8380-0eb6d368cfd2	g.chr17:21904069C>G	uc002gza.2	+	1		c.8C>G				NR_027084				Homo sapiens cDNA FLJ36000 fis, clone TESTI2015180.												0						tccgaggctccggcctgacct	0													3	12	---	---	---	---	0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	17	45127107	45127107	+	Missense_Mutation	SNP	C	G	G	rs147409399	by1000genomes	TCGA-EM-A22K-01A-11D-A17V-08	TCGA-EM-A22K-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	04cb54da-f53f-4bdd-9f67-42bf9140da17	b31f64cf-a428-415f-8380-0eb6d368cfd2	g.chr17:45127107C>G	uc010wkj.1	+	2	659	c.305C>G	c.(304-306)ACC>AGC	p.T102S	uc010wkl.1_RNA					SubName: Full=Putative uncharacterized protein LRRC37A3;																		CCTTCGTTCACCCAAGAGCAT	0.592													4	105	---	---	---	---	0	0	0.001168	0	0
TMEM143	55260	broad.mit.edu	37	19	48863423	48863423	+	Missense_Mutation	SNP	G	C	C			TCGA-EM-A22K-01A-11D-A17V-08	TCGA-EM-A22K-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	04cb54da-f53f-4bdd-9f67-42bf9140da17	b31f64cf-a428-415f-8380-0eb6d368cfd2	g.chr19:48863423G>C	uc002pix.1	-	3	284	c.275C>G	c.(274-276)TCG>TGG	p.S92W	TMEM143_uc002piw.1_RNA|TMEM143_uc002piy.1_Intron|TMEM143_uc010xzn.1_Missense_Mutation_p.S92W|TMEM143_uc010elw.1_Intron|TMEM143_uc010xzo.1_Intron|TMEM143_uc010xzp.1_Missense_Mutation_p.S92W|TMEM143_uc010xzq.1_Intron	NM_018273	NP_060743	Q96AN5	TM143_HUMAN	transmembrane protein 143	92						integral to membrane|mitochondrion					0		all_epithelial(76;9.64e-05)|all_lung(116;0.000147)|Lung NSC(112;0.000251)|Prostate(7;0.0187)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000149)|all cancers(93;0.000198)|Epithelial(262;0.0151)|GBM - Glioblastoma multiforme(486;0.0157)		TGCCGGACTCGAGTGGAATTC	0.562													3	57	---	---	---	---	0	0	0.009096	0	0
CCDC150	284992	broad.mit.edu	37	2	197521549	197521549	+	Silent	SNP	T	A	A			TCGA-EM-A22K-01A-11D-A17V-08	TCGA-EM-A22K-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	04cb54da-f53f-4bdd-9f67-42bf9140da17	b31f64cf-a428-415f-8380-0eb6d368cfd2	g.chr2:197521549T>A	uc002utp.1	+	3	504	c.369T>A	c.(367-369)ACT>ACA	p.T123T	CCDC150_uc002uto.1_Silent_p.T123T|CCDC150_uc010zgq.1_RNA|CCDC150_uc010zgr.1_Intron|CCDC150_uc010zgs.1_Intron	NM_001080539	NP_001074008	Q8NCX0	CC150_HUMAN	coiled-coil domain containing 150	123	Potential.										0						GGCTGCAAACTGAAAAGGATT	0.388													4	46	---	---	---	---	0	0	0.009096	0	0
COL4A4	1286	broad.mit.edu	37	2	227979396	227979396	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A22K-01A-11D-A17V-08	TCGA-EM-A22K-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	04cb54da-f53f-4bdd-9f67-42bf9140da17	b31f64cf-a428-415f-8380-0eb6d368cfd2	g.chr2:227979396T>C	uc010zlt.1	-	8	1160	c.506A>G	c.(505-507)AAG>AGG	p.K169R		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	169	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		TTTTTCTCCCTTTTCCCCAGG	0.299													3	55	---	---	---	---	0	0	0.004672	0	0
C20orf103	24141	broad.mit.edu	37	20	9498782	9498782	+	Missense_Mutation	SNP	G	T	T			TCGA-EM-A22K-01A-11D-A17V-08	TCGA-EM-A22K-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	04cb54da-f53f-4bdd-9f67-42bf9140da17	b31f64cf-a428-415f-8380-0eb6d368cfd2	g.chr20:9498782G>T	uc002wni.1	+	5	800	c.571G>T	c.(571-573)GCC>TCC	p.A191S	C20orf103_uc010zrc.1_Missense_Mutation_p.A147S	NM_012261	NP_036393	Q9UJQ1	CT103_HUMAN	chromosome 20 open reading frame 103 precursor	191	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|lung(1)|breast(1)	3			COAD - Colon adenocarcinoma(9;0.194)			CATTTCACTGGCCTCTAGTGA	0.507													24	44	---	---	---	---	2.21704e-12	5.09918e-12	0.002780	1	0
SCUBE1	80274	broad.mit.edu	37	22	43619190	43619190	+	Missense_Mutation	SNP	A	G	G			TCGA-EM-A22K-01A-11D-A17V-08	TCGA-EM-A22K-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	04cb54da-f53f-4bdd-9f67-42bf9140da17	b31f64cf-a428-415f-8380-0eb6d368cfd2	g.chr22:43619190A>G	uc003bdt.1	-	11	1328	c.1240T>C	c.(1240-1242)TCC>CCC	p.S414P		NM_173050	NP_766638	Q8IWY4	SCUB1_HUMAN	signal peptide, CUB domain, EGF-like 1	414					adult heart development|blood coagulation|endothelial cell differentiation|inflammatory response|post-embryonic development|protein homooligomerization	external side of plasma membrane|extracellular space|extrinsic to plasma membrane	calcium ion binding|identical protein binding|protein heterodimerization activity			central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	5		all_neural(38;0.0414)|Ovarian(80;0.07)				GCCCGGGGGGAGGTCTTGGCG	0.647													4	108	---	---	---	---	0	0	0.001168	0	0
MYRIP	25924	broad.mit.edu	37	3	40223732	40223732	+	Missense_Mutation	SNP	A	G	G			TCGA-EM-A22K-01A-11D-A17V-08	TCGA-EM-A22K-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	04cb54da-f53f-4bdd-9f67-42bf9140da17	b31f64cf-a428-415f-8380-0eb6d368cfd2	g.chr3:40223732A>G	uc003cka.2	+	9	1030	c.895A>G	c.(895-897)ATC>GTC	p.I299V	MYRIP_uc010hhu.2_RNA|MYRIP_uc010hhv.2_Missense_Mutation_p.I299V|MYRIP_uc010hhw.2_Missense_Mutation_p.I210V|MYRIP_uc011ayz.1_Missense_Mutation_p.I112V|uc003ckb.2_Intron	NM_015460	NP_056275	Q8NFW9	MYRIP_HUMAN	myosin VIIA and Rab interacting protein	299	Myosin-binding.				intracellular protein transport		actin binding|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5				KIRC - Kidney renal clear cell carcinoma(284;0.174)|Kidney(284;0.206)		TGCCTTCTCAATCACTGGAGA	0.592													4	128	---	---	---	---	0	0	0.009096	0	0
ANTXR2	118429	broad.mit.edu	37	4	80992749	80992749	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A22K-01A-11D-A17V-08	TCGA-EM-A22K-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	04cb54da-f53f-4bdd-9f67-42bf9140da17	b31f64cf-a428-415f-8380-0eb6d368cfd2	g.chr4:80992749T>C	uc003hlz.3	-	2	975	c.212A>G	c.(211-213)GAG>GGG	p.E71G	ANTXR2_uc003hly.3_Missense_Mutation_p.E71G|ANTXR2_uc003hlx.1_RNA|ANTXR2_uc010ijn.2_Missense_Mutation_p.E71G	NM_001145794	NP_001139266	P58335	ANTR2_HUMAN	anthrax toxin receptor 2 isoform 2	71	Extracellular (Potential).|VWFA.					endoplasmic reticulum membrane|extracellular region|integral to membrane|plasma membrane	metal ion binding|protein binding|receptor activity			ovary(1)	1						CACAAATCTCTCCGCAAGTTG	0.368									Juvenile_Hyaline_Fibromatosis				26	26	---	---	---	---	0	0	0.004656	0	0
ZNF322A	79692	broad.mit.edu	37	6	26638435	26638435	+	Missense_Mutation	SNP	C	G	G			TCGA-EM-A22K-01A-11D-A17V-08	TCGA-EM-A22K-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	04cb54da-f53f-4bdd-9f67-42bf9140da17	b31f64cf-a428-415f-8380-0eb6d368cfd2	g.chr6:26638435C>G	uc003nil.3	-	4	976	c.347G>C	c.(346-348)GGA>GCA	p.G116A	ZNF322A_uc003nij.2_5'Flank	NM_024639	NP_078915	Q6U7Q0	Z322A_HUMAN	zinc finger protein 322A	116	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding				0						TCTCTGATGTCCTGAAAGCGC	0.413													3	126	---	---	---	---	0	0	0.004672	0	0
TIAM2	26230	broad.mit.edu	37	6	155458519	155458519	+	Missense_Mutation	SNP	T	A	A			TCGA-EM-A22K-01A-11D-A17V-08	TCGA-EM-A22K-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	04cb54da-f53f-4bdd-9f67-42bf9140da17	b31f64cf-a428-415f-8380-0eb6d368cfd2	g.chr6:155458519T>A	uc003qqb.2	+	7	2676	c.1403T>A	c.(1402-1404)ATG>AAG	p.M468K	TIAM2_uc003qqe.2_Missense_Mutation_p.M468K|TIAM2_uc010kjj.2_Missense_Mutation_p.M1K	NM_012454	NP_036586	Q8IVF5	TIAM2_HUMAN	T-cell lymphoma invasion and metastasis 2	468					apoptosis|cellular lipid metabolic process|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|filopodium|growth cone|lamellipodium	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			ovary(3)|breast(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;8.1e-13)|BRCA - Breast invasive adenocarcinoma(81;0.0053)		GAGTTGGAAATGAGCAGGACC	0.493													6	171	---	---	---	---	0	0	0.001168	0	0
HEATR7A	727957	broad.mit.edu	37	8	145235189	145235189	+	Missense_Mutation	SNP	A	C	C			TCGA-EM-A22K-01A-11D-A17V-08	TCGA-EM-A22K-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	04cb54da-f53f-4bdd-9f67-42bf9140da17	b31f64cf-a428-415f-8380-0eb6d368cfd2	g.chr8:145235189A>C	uc003zbk.3	+	6	646	c.409A>C	c.(409-411)ACC>CCC	p.T137P	HEATR7A_uc003zbg.2_Missense_Mutation_p.T137P|HEATR7A_uc003zbh.3_Missense_Mutation_p.T137P|HEATR7A_uc003zbi.3_Missense_Mutation_p.T137P|HEATR7A_uc011lla.1_Missense_Mutation_p.T137P|HEATR7A_uc010mft.2_Missense_Mutation_p.T137P	NM_032450	NP_115826	Q8NDA8	HTR7A_HUMAN	HEAT repeat containing 7A isoform 1	137							binding				0						GCACCCTGGGACCCTGCCACA	0.697													5	50	---	---	---	---	0	0	0.004482	0	0
Unknown	0	broad.mit.edu	37	12	9391909	9391909	+	5'Flank	DEL	T	-	-			TCGA-EM-A22K-01A-11D-A17V-08	TCGA-EM-A22K-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	04cb54da-f53f-4bdd-9f67-42bf9140da17	b31f64cf-a428-415f-8380-0eb6d368cfd2	g.chr12:9391909delT	uc001qvm.1	+											Homo sapiens cDNA FLJ44260 fis, clone TLIVE2000979.																		tttttttttcttttttttttt	0.249													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	3131446	3131446	+	IGR	DEL	C	-	-	rs66993077		TCGA-EM-A22K-01A-11D-A17V-08	TCGA-EM-A22K-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	04cb54da-f53f-4bdd-9f67-42bf9140da17	b31f64cf-a428-415f-8380-0eb6d368cfd2	g.chr19:3131446delC								GNA11 (9994 upstream) : GNA15 (4745 downstream)																							aaaaaaaaaacaaaaaaaaaa	0.348													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	92260423	92260424	+	IGR	INS	-	C	C	rs111904852		TCGA-EM-A22K-01A-11D-A17V-08	TCGA-EM-A22K-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	04cb54da-f53f-4bdd-9f67-42bf9140da17	b31f64cf-a428-415f-8380-0eb6d368cfd2	g.chr2:92260423_92260424insC								FKSG73 (129929 upstream) : None (None downstream)																							tagctgATAGATAACATCAAGT	0.223													3	5	---	---	---	---					
RAB3GAP1	22930	broad.mit.edu	37	2	135809732	135809732	+	5'Flank	DEL	A	-	-			TCGA-EM-A22K-01A-11D-A17V-08	TCGA-EM-A22K-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	04cb54da-f53f-4bdd-9f67-42bf9140da17	b31f64cf-a428-415f-8380-0eb6d368cfd2	g.chr2:135809732delA	uc002tuj.2	+						RAB3GAP1_uc010fnf.2_5'Flank|RAB3GAP1_uc010fng.2_5'Flank	NM_012233	NP_036365	Q15042	RB3GP_HUMAN	RAB3 GTPase-activating protein							centrosome|nucleus|soluble fraction	Rab GTPase activator activity|Rab GTPase binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(221;0.117)		CTAAAGACTTAACAGACCTGG	0.358													4	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	233282753	233282753	+	IGR	DEL	T	-	-			TCGA-EM-A22K-01A-11D-A17V-08	TCGA-EM-A22K-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	04cb54da-f53f-4bdd-9f67-42bf9140da17	b31f64cf-a428-415f-8380-0eb6d368cfd2	g.chr2:233282753delT								ALPPL2 (7331 upstream) : ALPI (38080 downstream)																							GGGGGGGGGGTGATCTTCTGC	0.577													5	10	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	53691714	53691721	+	IGR	DEL	GACACACA	-	-	rs71196482		TCGA-EM-A22K-01A-11D-A17V-08	TCGA-EM-A22K-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	04cb54da-f53f-4bdd-9f67-42bf9140da17	b31f64cf-a428-415f-8380-0eb6d368cfd2	g.chr20:53691714_53691721delGACACACA								DOK5 (424005 upstream) : CBLN4 (880776 downstream)																							AGGATCATTTGacacacacacacacaca	0.332													5	8	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	185536410	185536413	+	IGR	DEL	TTTG	-	-	rs146473442		TCGA-EM-A22K-01A-11D-A17V-08	TCGA-EM-A22K-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	04cb54da-f53f-4bdd-9f67-42bf9140da17	b31f64cf-a428-415f-8380-0eb6d368cfd2	g.chr4:185536410_185536413delTTTG								IRF2 (140684 upstream) : CASP3 (12439 downstream)																							CAAAGCCGATtttgtttgtttgtt	0.260													6	8	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	150192038	150192038	+	IGR	DEL	G	-	-			TCGA-EM-A22K-01A-11D-A17V-08	TCGA-EM-A22K-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	04cb54da-f53f-4bdd-9f67-42bf9140da17	b31f64cf-a428-415f-8380-0eb6d368cfd2	g.chrX:150192038delG								HMGB3 (32792 upstream) : GPR50 (153021 downstream)																							TTTTTTTTTTGTCAAATGATC	0.274													2	4	---	---	---	---					
