Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PIK3CD	5293	broad.mit.edu	37	1	9783255	9783255	+	Silent	SNP	C	G	G			TCGA-EM-A3AJ-01A-11D-A202-08	TCGA-EM-A3AJ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	a57a666a-7a35-44c2-b805-ff1794f0526a	3919bfff-dedc-4025-87d7-6f8b2ab2c8a3	g.chr1:9783255C>G	uc001aqb.3	+	20	2707	c.2499C>G	c.(2497-2499)ACC>ACG	p.T833T	PIK3CD_uc010oaf.1_Silent_p.T832T|PIK3CD_uc001aqe.3_Silent_p.T857T	NM_005026	NP_005017	O00329	PK3CD_HUMAN	catalytic phosphatidylinositol 3-kinase delta	833	PI3K/PI4K.				phosphatidylinositol-mediated signaling|protein phosphorylation	phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding			lung(4)|skin(2)|central_nervous_system(1)	7	all_lung(157;0.222)	all_lung(118;2.44e-05)|Lung NSC(185;4.08e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00314)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0231)|Colorectal(212;7.52e-08)|COAD - Colon adenocarcinoma(227;1.78e-05)|Kidney(185;0.000322)|KIRC - Kidney renal clear cell carcinoma(229;0.00114)|BRCA - Breast invasive adenocarcinoma(304;0.0021)|STAD - Stomach adenocarcinoma(132;0.00395)|READ - Rectum adenocarcinoma(331;0.0419)		GTTCAGACACCATCGCCAACA	0.607000													7	239	---	---	---	---	0	0	0.278610	0	0
MCM10	55388	broad.mit.edu	37	10	13213015	13213015	+	Missense_Mutation	SNP	G	A	A	rs150335901		TCGA-EM-A3AJ-01A-11D-A202-08	TCGA-EM-A3AJ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	a57a666a-7a35-44c2-b805-ff1794f0526a	3919bfff-dedc-4025-87d7-6f8b2ab2c8a3	g.chr10:13213015G>A	uc001ima.2	+	3	202	c.101G>A	c.(100-102)CGG>CAG	p.R34Q	MCM10_uc001imb.2_Missense_Mutation_p.R34Q|MCM10_uc001imc.2_Missense_Mutation_p.R34Q	NM_182751	NP_877428	Q7L590	MCM10_HUMAN	minichromosome maintenance complex component 10	34					cell cycle checkpoint|DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle	nucleoplasm	metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3						TTCTTGACGCGGGAAAATGGC	0.488000													5	195	---	---	---	---	0	0	0.217242	0	0
PVRL1	5818	broad.mit.edu	37	11	119548360	119548360	+	Missense_Mutation	SNP	A	G	G			TCGA-EM-A3AJ-01A-11D-A202-08	TCGA-EM-A3AJ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	a57a666a-7a35-44c2-b805-ff1794f0526a	3919bfff-dedc-4025-87d7-6f8b2ab2c8a3	g.chr11:119548360A>G	uc001pwv.2	-	3	810	c.638T>C	c.(637-639)CTG>CCG	p.L213P	PVRL1_uc001pwu.1_Missense_Mutation_p.L213P|PVRL1_uc001pww.2_Missense_Mutation_p.L213P	NM_002855	NP_002846	Q15223	PVRL1_HUMAN	poliovirus receptor-related 1 isoform 1	213	Extracellular (Potential).|Ig-like C2-type 1.				adherens junction organization|cell junction assembly|entry of virus into host cell|heterophilic cell-cell adhesion|homophilic cell adhesion|immune response	cell-cell adherens junction|extracellular region|integral to membrane	cell adhesion molecule binding|coreceptor activity|protein homodimerization activity				0		Breast(348;0.037)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.29e-05)		GCTGGGCACCAGGCGGTAGCG	0.582000													3	106	---	---	---	---	0	0	0.150653	0	0
NUAK1	9891	broad.mit.edu	37	12	106460871	106460871	+	Silent	SNP	G	A	A	rs142540856		TCGA-EM-A3AJ-01A-11D-A202-08	TCGA-EM-A3AJ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	a57a666a-7a35-44c2-b805-ff1794f0526a	3919bfff-dedc-4025-87d7-6f8b2ab2c8a3	g.chr12:106460871G>A	uc001tlj.1	-	7	3075	c.1695C>T	c.(1693-1695)TAC>TAT	p.Y565Y		NM_014840	NP_055655	O60285	NUAK1_HUMAN	AMPK-related protein kinase 5	565							ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(1)|central_nervous_system(1)	2						AAGGGCGGCTGTAGCTCCGGG	0.632000													8	50	---	---	---	---	0	0	0.335167	0	0
TRAFD1	10906	broad.mit.edu	37	12	112589709	112589709	+	Missense_Mutation	SNP	T	G	G			TCGA-EM-A3AJ-01A-11D-A202-08	TCGA-EM-A3AJ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	a57a666a-7a35-44c2-b805-ff1794f0526a	3919bfff-dedc-4025-87d7-6f8b2ab2c8a3	g.chr12:112589709T>G	uc001ttp.2	+	10	1470	c.1384T>G	c.(1384-1386)TAT>GAT	p.Y462D	TRAFD1_uc001tto.2_Missense_Mutation_p.Y462D	NM_006700	NP_006691	O14545	TRAD1_HUMAN	TRAF-type zinc finger domain containing 1	462					negative regulation of innate immune response	intracellular	protein binding|zinc ion binding				0						GACAGCTACCTATAACCAGCT	0.542000													16	246	---	---	---	---	0	0	0.500413	0	0
Unknown	0	broad.mit.edu	37	15	28948349	28948349	+	5'Flank	SNP	T	C	C			TCGA-EM-A3AJ-01A-11D-A202-08	TCGA-EM-A3AJ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	a57a666a-7a35-44c2-b805-ff1794f0526a	3919bfff-dedc-4025-87d7-6f8b2ab2c8a3	g.chr15:28948349T>C	uc001zcd.2	+											DQ593033																		CCACTGGCTCTCAGAAGGGGT	0.567000													2	7	---	---	---	---	0	0	0.115264	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77396028	77396028	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EM-A3AJ-01A-11D-A202-08	TCGA-EM-A3AJ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	a57a666a-7a35-44c2-b805-ff1794f0526a	3919bfff-dedc-4025-87d7-6f8b2ab2c8a3	g.chr16:77396028C>T	uc002ffc.3	-	7	1609	c.1190G>A	c.(1189-1191)TGG>TAG	p.W397*	ADAMTS18_uc010chc.1_5'UTR|ADAMTS18_uc002ffe.1_Nonsense_Mutation_p.W93*|ADAMTS18_uc010vni.1_Intron	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	397	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						TTCATTCTTCCAAGAACAAAT	0.398000													7	27	---	---	---	---	0	0	0.248553	0	0
LOC96610	96610	broad.mit.edu	37	22	23006961	23006961	+	RNA	SNP	C	T	T			TCGA-EM-A3AJ-01A-11D-A202-08	TCGA-EM-A3AJ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	a57a666a-7a35-44c2-b805-ff1794f0526a	3919bfff-dedc-4025-87d7-6f8b2ab2c8a3	g.chr22:23006961C>T	uc011aim.1	+	119		c.7564C>T								Parts of antibodies, mostly variable regions.												0						GGCTCTGCTCCTCCTCACCCT	0.627000													3	5	---	---	---	---	0	0	0.115264	0	0
C6orf97	80129	broad.mit.edu	37	6	151939128	151939128	+	Missense_Mutation	SNP	T	G	G			TCGA-EM-A3AJ-01A-11D-A202-08	TCGA-EM-A3AJ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	a57a666a-7a35-44c2-b805-ff1794f0526a	3919bfff-dedc-4025-87d7-6f8b2ab2c8a3	g.chr6:151939128T>G	uc003qol.2	+	11	2083	c.1994T>G	c.(1993-1995)GTG>GGG	p.V665G		NM_025059	NP_079335	Q8IYT3	CF097_HUMAN	hypothetical protein LOC80129	665											0		Ovarian(120;0.126)	BRCA - Breast invasive adenocarcinoma(37;0.111)	OV - Ovarian serous cystadenocarcinoma(155;1.48e-10)		GGCTTGAACGTGACCAGCCTT	0.438000													20	79	---	---	---	---	0	0	0.575678	0	0
CNTLN	54875	broad.mit.edu	37	9	17236437	17236437	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A3AJ-01A-11D-A202-08	TCGA-EM-A3AJ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	a57a666a-7a35-44c2-b805-ff1794f0526a	3919bfff-dedc-4025-87d7-6f8b2ab2c8a3	g.chr9:17236437G>A	uc003zmz.2	+	5	726	c.700G>A	c.(700-702)GAG>AAG	p.E234K	CNTLN_uc003zmx.3_Missense_Mutation_p.E234K|CNTLN_uc003zmy.2_Missense_Mutation_p.E234K|CNTLN_uc010mio.2_5'UTR	NM_017738	NP_060208	Q9NXG0	CNTLN_HUMAN	centlein isoform 1	234						centriole|membrane	two-component sensor activity			pancreas(1)	1				GBM - Glioblastoma multiforme(50;6.14e-10)		GAACAAAGAAGAGCAAAACAG	0.383000													14	61	---	---	---	---	0	0	0.557998	0	0
Unknown	0	broad.mit.edu	37	2	44293372	44293373	+	IGR	INS	-	T	T	rs112109764	by1000genomes	TCGA-EM-A3AJ-01A-11D-A202-08	TCGA-EM-A3AJ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	a57a666a-7a35-44c2-b805-ff1794f0526a	3919bfff-dedc-4025-87d7-6f8b2ab2c8a3	g.chr2:44293372_44293373insT								LRPPRC (70228 upstream) : PPM1B (102627 downstream)																							TTTTGTTTTTGTTTTGTTTTTT	0.332													2	4	---	---	---	---					
MIR583	693168	broad.mit.edu	37	5	95414786	95414787	+	5'Flank	INS	-	TAAAA	TAAAA	rs147547992	by1000genomes	TCGA-EM-A3AJ-01A-11D-A202-08	TCGA-EM-A3AJ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	a57a666a-7a35-44c2-b805-ff1794f0526a	3919bfff-dedc-4025-87d7-6f8b2ab2c8a3	g.chr5:95414786_95414787insTAAAA	hsa-mir-583|MI0003590	+																							0						acccatgcacttaaagttaaaa	0.168													4	2	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	133834137	133834139	+	IGR	DEL	CCG	-	-	rs145336475	by1000genomes	TCGA-EM-A3AJ-01A-11D-A202-08	TCGA-EM-A3AJ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	a57a666a-7a35-44c2-b805-ff1794f0526a	3919bfff-dedc-4025-87d7-6f8b2ab2c8a3	g.chr9:133834137_133834139delCCG								FIBCD1 (19682 upstream) : LAMC3 (50365 downstream)																							accaccaccaccgccatcaccat	0.000													2	4	---	---	---	---					
