Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PRB1	5542	broad.mit.edu	37	12	11506602	11506602	+	Silent	SNP	T	C	C			TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr12:11506602T>C	uc001qzw.1	-	3	472	c.435A>G	c.(433-435)GGA>GGG	p.G145G	PRB1_uc001qzu.1_Intron|PRB1_uc001qzv.1_Intron	NM_005039	NP_005030	P04280	PRP1_HUMAN	proline-rich protein BstNI subfamily 1 isoform 1	206	15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].|8.		Missing (in clone CP-4).|Missing (in clone CP-5).|Missing (in allele S).			extracellular region					0			OV - Ovarian serous cystadenocarcinoma(49;0.185)			GGGACTTGTCTCCTTGTGGGG	0.607000													3	39	---	---	---	---	0	0	1	0	0
LRP1	4035	broad.mit.edu	37	12	57563020	57563020	+	Missense_Mutation	SNP	C	G	G			TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr12:57563020C>G	uc001snd.2	+	20	3559	c.3093C>G	c.(3091-3093)CAC>CAG	p.H1031Q	LRP1_uc009zpi.1_RNA	NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	1031	LDL-receptor class A 7.|Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	TCCCCGAGCACTGGACCTGCG	0.612000													3	46	---	---	---	---	0	0	1	0	0
MGAT2	4247	broad.mit.edu	37	14	50088451	50088451	+	Missense_Mutation	SNP	C	G	G			TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr14:50088451C>G	uc001wwr.2	+	1	963	c.465C>G	c.(463-465)TTC>TTG	p.F155L	SDCCAG1_uc010anj.1_Intron|RPL36AL_uc001wwq.1_5'Flank	NM_002408	NP_002399	Q10469	MGAT2_HUMAN	mannosyl (alpha-1,6-)-glycoprotein	155	Lumenal (Potential).				oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|Golgi stack|integral to membrane|membrane fraction	alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity				0	all_epithelial(31;0.0021)|Breast(41;0.0124)					GCCATGACTTCTGGTCGACCG	0.512000													3	71	---	---	---	---	0	0	1	0	0
SLC6A10P	386757	broad.mit.edu	37	16	32890622	32890622	+	Missense_Mutation	SNP	T	G	G			TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr16:32890622T>G	uc002edh.1	-	5	440	c.264A>C	c.(262-264)AAA>AAC	p.K88N	SLC6A10P_uc002edi.1_RNA					RecName: Full=Transporter;												0						CGTTGGTGTTTTTGTAGACCA	0.512000													3	25	---	---	---	---	0	0	1	0	0
CES8	283848	broad.mit.edu	37	16	67036990	67036990	+	Silent	SNP	C	G	G			TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr16:67036990C>G	uc002eqv.2	+	6	751	c.708C>G	c.(706-708)GCC>GCG	p.A236A	CES8_uc010vix.1_Silent_p.A236A|CES8_uc002eqw.2_Silent_p.A236A|CES8_uc002eqy.2_Silent_p.A138A|CES8_uc002eqx.2_Silent_p.A42A|CES8_uc010viy.1_Silent_p.A142A|CES8_uc010viz.1_Silent_p.A138A|CES8_uc002eqz.2_5'Flank	NM_173815	NP_776176	Q5XG92	EST4A_HUMAN	carboxylesterase 8 (putative)	236						extracellular region	carboxylesterase activity				0						CACCCCTAGCCTCGGGTCTCT	0.552000													27	51	---	---	---	---	0	0	1	0	0
PDXDC2	283970	broad.mit.edu	37	16	70011854	70011854	+	Silent	SNP	T	C	C	rs145494569	by1000genomes	TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr16:70011854T>C	uc010vlq.1	-	6	850	c.672A>G	c.(670-672)CAA>CAG	p.Q224Q	CLEC18C_uc002exy.2_Intron|PDXDC2_uc002eyb.2_Intron|PDXDC2_uc002eyc.2_RNA					SubName: Full=Putative uncharacterized protein;												0						ACTGTGATGCTTGTAGGCAGC	0.522000													3	15	---	---	---	---	0	0	1	0	0
PITPNA	5306	broad.mit.edu	37	17	1456343	1456343	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr17:1456343T>C	uc002fst.3	-	3	408	c.152A>G	c.(151-153)GAC>GGC	p.D51G	PITPNA_uc010cjt.2_5'UTR|PITPNA_uc010cju.2_5'UTR|PITPNA_uc010vqn.1_RNA	NM_006224	NP_006215	Q00169	PIPNA_HUMAN	phosphatidylinositol transfer protein, alpha	51					axon guidance|lipid metabolic process|visual perception	cytoplasm	phosphatidylcholine transmembrane transporter activity|phosphatidylinositol transporter activity|protein binding			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.0845)		TTTCTCACCGTCCTTCTCGTA	0.552000													56	89	---	---	---	---	0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	15332891	15332891	+	RNA	SNP	G	A	A			TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr17:15332891G>A	uc002goo.2	-	1		c.428C>T								Homo sapiens cDNA clone IMAGE:3626633, partial cds.																		ggtcatggcggtagtgatggg	0.080000													3	15	---	---	---	---	0	0	1	0	0
TRPV2	51393	broad.mit.edu	37	17	16338272	16338272	+	Missense_Mutation	SNP	C	A	A			TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr17:16338272C>A	uc002gpy.2	+	14	2550	c.2183C>A	c.(2182-2184)GCA>GAA	p.A728E	TRPV2_uc002gpz.2_Missense_Mutation_p.A298E	NM_016113	NP_057197	Q9Y5S1	TRPV2_HUMAN	transient receptor potential cation channel,	728	Cytoplasmic (Potential).				sensory perception	integral to plasma membrane|melanosome	calcium channel activity			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (92;0.0837)		CCGTCAGGGGCAGGTGTCCCT	0.627000													12	27	---	---	---	---	4.3838e-07	4.80131e-07	1	1	0
ZNF799	90576	broad.mit.edu	37	19	12501446	12501446	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr19:12501446T>C	uc010dyt.2	-	4	1916	c.1766A>G	c.(1765-1767)GAA>GGA	p.E589G	ZNF799_uc002mts.3_Intron	NM_001080821	NP_001074290	Q96GE5	ZN799_HUMAN	zinc finger protein 799	589	C2H2-type 17.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|ovary(2)|skin(1)	6						TTCCTTACATTCATACGGGTT	0.413000													3	15	---	---	---	---	0	0	1	0	0
RHBDD3	25807	broad.mit.edu	37	22	29656429	29656429	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr22:29656429G>A	uc003aeq.1	-	6	1241	c.869C>T	c.(868-870)GCG>GTG	p.A290V	RHBDD3_uc003aer.1_RNA	NM_012265	NP_036397	Q9Y3P4	RHBD3_HUMAN	rhomboid domain containing 3	290						integral to membrane	serine-type endopeptidase activity			ovary(1)	1						ATCCAAGGCCGCCCACATCGG	0.672000													2	2	---	---	---	---	0	0	1	0	0
MAPK8IP2	23542	broad.mit.edu	37	22	51044090	51044090	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr22:51044090C>T	uc003bmx.2	+	8	2059	c.1942C>T	c.(1942-1944)CGC>TGC	p.R648C	MAPK8IP2_uc003bmy.2_Missense_Mutation_p.R621C|MAPK8IP2_uc011asc.1_Missense_Mutation_p.R2C	NM_012324	NP_036456	Q13387	JIP2_HUMAN	mitogen-activated protein kinase 8 interacting	648	SH3.				behavioral fear response|dendrite morphogenesis|MAPKKK cascade|nonassociative learning|positive regulation of anti-apoptosis|regulation of excitatory postsynaptic membrane potential|regulation of JNK cascade|regulation of receptor activity|regulation of synaptic transmission, glutamatergic|signal complex assembly|social behavior	cytoplasm|postsynaptic density	beta-amyloid binding|kinesin binding|MAP-kinase scaffold activity|protein kinase activator activity|protein kinase binding			large_intestine(2)|central_nervous_system(1)	3		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		OV - Ovarian serous cystadenocarcinoma(4;1.28e-70)|Epithelial(4;3.46e-65)|GBM - Glioblastoma multiforme(4;4.83e-06)|Lung(4;0.125)|BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		CTTCAACATGCGCACGGGGGA	0.652000													4	21	---	---	---	---	0	0	1	0	0
PCDHB8	56128	broad.mit.edu	37	5	140559343	140559343	+	Silent	SNP	G	T	T			TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr5:140559343G>T	uc011dai.1	+	1	1914	c.1728G>T	c.(1726-1728)CTG>CTT	p.L576L	PCDHB16_uc003liv.2_5'Flank|PCDHB16_uc010jfw.1_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	576	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCACCGAGCTGGTGCCCCGGG	0.706000													9	61	---	---	---	---	1.00776e-21	1.15892e-21	1	1	0
TAAR8	83551	broad.mit.edu	37	6	132874705	132874705	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr6:132874705T>C	uc011ecj.1	+	1	874	c.874T>C	c.(874-876)TAT>CAT	p.Y292H		NM_053278	NP_444508	Q969N4	TAAR8_HUMAN	trace amine associated receptor 8	292	Helical; Name=7; (Potential).					plasma membrane	G-protein coupled receptor activity			ovary(1)	1	Breast(56;0.112)			OV - Ovarian serous cystadenocarcinoma(155;0.00412)|GBM - Glioblastoma multiforme(226;0.00792)		TGCCTATATCTATGAAATTTG	0.368000													3	88	---	---	---	---	0	0	1	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				11	24	---	---	---	---	0	0	1	0	0
LOC442421	442421	broad.mit.edu	37	9	66499770	66499770	+	Missense_Mutation	SNP	G	T	T	rs75046133		TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr9:66499770G>T	uc004aee.1	+	1	580	c.580G>T	c.(580-582)GCC>TCC	p.A194S	LOC442421_uc004aed.1_RNA					Homo sapiens hypothetical LOC442421, mRNA (cDNA clone IMAGE:40031134).												0						CAACCTGGTGGCCATCGTGGT	0.582000													10	107	---	---	---	---	1.2644e-06	1.32188e-06	1	1	0
CAMSAP1	157922	broad.mit.edu	37	9	138713116	138713116	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr9:138713116G>A	uc004cgr.3	-	11	3391	c.3391C>T	c.(3391-3393)CCG>TCG	p.P1131S	CAMSAP1_uc004cgq.3_Missense_Mutation_p.P1021S|CAMSAP1_uc010nbg.2_Missense_Mutation_p.P853S	NM_015447	NP_056262	Q5T5Y3	CAMP1_HUMAN	calmodulin regulated spectrin-associated protein	1131						cytoplasm|microtubule				ovary(1)|central_nervous_system(1)|pancreas(1)	3				OV - Ovarian serous cystadenocarcinoma(145;1.4e-06)|Epithelial(140;1.11e-05)		CTCAAGTGCGGGAGCGTCTCT	0.647000													3	46	---	---	---	---	0	0	1	0	0
BGN	633	broad.mit.edu	37	X	152770767	152770767	+	Missense_Mutation	SNP	G	A	A	rs150272427	byFrequency	TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chrX:152770767G>A	uc004fhr.1	+	3	482	c.310G>A	c.(310-312)GAG>AAG	p.E104K	BGN_uc004fhq.1_RNA	NM_001711	NP_001702	P21810	PGS1_HUMAN	biglycan preproprotein	104	LRR 2.					proteinaceous extracellular matrix|transport vesicle	extracellular matrix structural constituent			breast(2)	2	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CGACATCTCCGAGCTCCGCAA	0.617000													26	44	---	---	---	---	0	0	1	0	0
LRRIQ3	127255	broad.mit.edu	37	1	74575212	74575213	+	Frame_Shift_Ins	INS	-	T	T			TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr1:74575212_74575213insT	uc001dfy.3	-	5	924_925	c.732_733insA	c.(730-735)AAACAGfs	p.K244fs	LRRIQ3_uc001dfz.3_RNA	NM_001105659	NP_001099129	A6PVS8	LRIQ3_HUMAN	leucine-rich repeats and IQ motif containing 3	244_245				QQEKII -> TAGKNY (in Ref. 1; BAD18621).						ovary(2)	2						TTTTCCTGCTGTTTTTTTTTGT	0.327													9	23	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	121484151	121484152	+	IGR	DEL	CT	-	-	rs9729839		TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr1:121484151_121484152delCT								LOC647121 (170465 upstream) : None (None downstream)																							acttgaaacactctttttctgg	0.000													8	725	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	143274068	143274068	+	IGR	DEL	C	-	-			TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr1:143274068delC								None (None upstream) : LOC100286793 (373571 downstream)																							ctgaccctgacccctgaccct	0.005													3	4	---	---	---	---					
CACNB2	783	broad.mit.edu	37	10	18429592	18429592	+	5'Flank	DEL	G	-	-			TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr10:18429592delG	uc001ipr.2	+						CACNB2_uc009xjz.1_5'Flank|CACNB2_uc001ips.2_5'Flank|CACNB2_uc001ipt.2_5'Flank|CACNB2_uc010qcl.1_5'Flank|CACNB2_uc001ipu.2_5'Flank|CACNB2_uc001ipv.2_5'Flank|CACNB2_uc009xka.1_5'Flank	NM_201596	NP_963890	Q08289	CACB2_HUMAN	calcium channel, voltage-dependent, beta 2						axon guidance|neuromuscular junction development	integral to plasma membrane|sarcolemma|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			large_intestine(1)|central_nervous_system(1)|skin(1)	3					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	ATCAGAGCGCGGGGAGGCGGG	0.756													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42385606	42385606	+	IGR	DEL	G	-	-	rs67827809		TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr10:42385606delG								None (None upstream) : LOC441666 (441709 downstream)																							ggaattcaaaggaatcatcat	0.000													10	2030	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42387774	42387774	+	IGR	DEL	C	-	-	rs141701904		TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr10:42387774delC								None (None upstream) : LOC441666 (439541 downstream)																							aatcattgaacggaattgaat	0.000													7	1466	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42391470	42391470	+	IGR	DEL	T	-	-	rs28839468		TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr10:42391470delT								None (None upstream) : LOC441666 (435845 downstream)																							tcaaacggaatcaaacggaat	0.000													17	1226	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42400228	42400228	+	IGR	DEL	A	-	-	rs66504919		TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr10:42400228delA								None (None upstream) : LOC441666 (427087 downstream)																							ccaatggtagaaaaggaaata	0.000													12	313	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42400455	42400456	+	IGR	INS	-	G	G	rs71264011		TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr10:42400455_42400456insG								None (None upstream) : LOC441666 (426859 downstream)																							cttctttgtgttgtgtgtattc	0.000													13	1196	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42400586	42400586	+	IGR	DEL	A	-	-	rs74207080		TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr10:42400586delA								None (None upstream) : LOC441666 (426729 downstream)																							atcttcgtataaaaactagac	0.000													10	842	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42600053	42600053	+	IGR	DEL	T	-	-			TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr10:42600053delT								None (None upstream) : LOC441666 (227262 downstream)																							ttgaacggaattgaatggaat	0.000													37	1279	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	89804293	89804294	+	IGR	DEL	TC	-	-			TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr11:89804293_89804294delTC								TRIM64 (97055 upstream) : UBTFL1 (14824 downstream)																							GGAGTCGTTTTCTCTCTCTCTC	0.292													5	9	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	9555195	9555196	+	IGR	INS	-	C	C	rs140281398	by1000genomes	TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr12:9555195_9555196insC								LOC642846 (88511 upstream) : DDX12 (15092 downstream)																							AAGCCCCTCTTCCCCCCCTGGC	0.584													4	8	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	131962167	131962168	+	IGR	INS	-	ATA	ATA	rs148457819	by1000genomes	TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr12:131962167_131962168insATA								LOC116437 (264692 upstream) : SFRS8 (233467 downstream)																							tggtaatggtggtgatgatggt	0.000													12	13	---	---	---	---					
Unknown	0	broad.mit.edu	37	13	28388110	28388111	+	IGR	DEL	AC	-	-	rs34527016		TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr13:28388110_28388111delAC								GSX1 (20021 upstream) : PDX1 (106057 downstream)																							CCTGCCCCTGACACACACACAC	0.515													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	46388463	46388463	+	IGR	DEL	C	-	-	rs140637887		TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr16:46388463delC								None (None upstream) : ANKRD26P1 (114786 downstream)																							ccacttgattccatttacgat	0.000													8	410	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	46403697	46403698	+	IGR	INS	-	G	G	rs142975115		TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr16:46403697_46403698insG								None (None upstream) : ANKRD26P1 (99551 downstream)																							tttcattcgatgatgattccat	0.000													15	1556	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	46405916	46405916	+	IGR	DEL	T	-	-	rs77422485		TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr16:46405916delT								None (None upstream) : ANKRD26P1 (97333 downstream)																							ctttcaatcattCCCTTTGAT	0.050													9	662	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	57725064	57725073	+	IGR	DEL	AGAAGGAGGG	-	-	rs137989784	by1000genomes	TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr16:57725064_57725073delAGAAGGAGGG								GPR97 (1776 upstream) : CCDC135 (3640 downstream)																							aggaggaggaagaaggagggagaaggaggg	0.152													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	88477870	88477901	+	IGR	DEL	GGGCAGGGGTGCAAGCAGGCAGGGGTGCGAGC	-	-	rs112940864		TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr16:88477870_88477901delGGGCAGGGGTGCAAGCAGGCAGGGGTGCGAGC								BANP (366947 upstream) : ZNF469 (15978 downstream)																							gggtgcgagtgggcaggggtgcaagcaggcaggggtgcgagcgggcaggggt	0.427													6	10	---	---	---	---					
Unknown	0	broad.mit.edu	37	18	18517211	18517211	+	IGR	DEL	C	-	-			TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr18:18517211delC								None (None upstream) : ROCK1 (12494 downstream)																							gaaatgtcttcccataaaaac	0.000													8	583	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	27731986	27731989	+	IGR	DEL	TGTT	-	-			TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr19:27731986_27731989delTGTT								None (None upstream) : LOC148189 (549413 downstream)																							ggaaacactctgtttgtaaagtct	0.000													7	672	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	27736453	27736453	+	IGR	DEL	T	-	-	rs4567863		TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr19:27736453delT								None (None upstream) : LOC148189 (544949 downstream)																							tggaaacgggtttttttcttg	0.000													12	674	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	37784743	37784744	+	IGR	INS	-	AC	AC			TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr19:37784743_37784744insAC								ZNF383 (50169 upstream) : HKR1 (18995 downstream)																							gcatccccccaacacacacaca	0.054													8	68	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	102866421	102866421	+	IGR	DEL	G	-	-	rs66763003		TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr2:102866421delG								IL1RL2 (10611 upstream) : IL1RL1 (61541 downstream)																							TCTGGGTTGAGGGGGGGGCAC	0.572													6	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	41899770	41899771	+	IGR	DEL	AG	-	-			TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr20:41899770_41899771delAG								PTPRT (81213 upstream) : SFRS6 (186733 downstream)																							gaggaaagaaagagagagagag	0.134													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	62031134	62031134	+	IGR	DEL	C	-	-			TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr20:62031134delC								CHRNA4 (21645 upstream) : KCNQ2 (6408 downstream)																							CAGACGGGGGCCAGGCCAACA	0.662													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	10856872	10856872	+	IGR	DEL	A	-	-			TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr21:10856872delA								None (None upstream) : TPTE (49871 downstream)																							aacggaatggaatggaatgga	0.000													11	193	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	34355469	34355470	+	IGR	INS	-	C	C			TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr21:34355469_34355470insC								C21orf62 (169416 upstream) : OLIG2 (42769 downstream)																							cctctccccctccctggccctc	0.188													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	22	20151497	20151498	+	IGR	INS	-	ACC	ACC			TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr22:20151497_20151498insACC								ZDHHC8 (15968 upstream) : LOC150197 (42357 downstream)																							tcaccatcactaccaccaccac	0.000													5	7	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	176638400	176638403	+	IGR	DEL	GTGT	-	-	rs67828334		TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr3:176638400_176638403delGTGT								None (None upstream) : TBL1XR1 (100140 downstream)																							TCgtgtgtgcgtgtgtgtgtgtgt	0.078													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	197186599	197186600	+	IGR	INS	-	G	G	rs66804255		TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr3:197186599_197186600insG								DLG1 (160456 upstream) : BDH1 (50055 downstream)																							tgtggtcgggagggatgcagtt	0.153													7	54	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	560544	560544	+	IGR	DEL	C	-	-			TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr4:560544delC								PIGG (27225 upstream) : PDE6B (58819 downstream)																							ctgcatcccacccccttcatc	0.045													5	10	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	9523723	9523723	+	IGR	DEL	C	-	-			TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr4:9523723delC								DEFB131 (71484 upstream) : MIR548I2 (34066 downstream)																							CAGGGCCCGACCCCCTGGACC	0.622													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	49107447	49107447	+	IGR	DEL	T	-	-			TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr4:49107447delT								CWH43 (43354 upstream) : None (None downstream)																							ttccattccattccattgcac	0.000													10	315	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	168378000	168378002	+	IGR	DEL	TGG	-	-			TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr4:168378000_168378002delTGG								SPOCK3 (222259 upstream) : ANXA10 (635705 downstream)																							gtggtggtgatggtggtggtggt	0.182													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	58778285	58778285	+	IGR	DEL	C	-	-			TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr6:58778285delC								GUSBL2 (490561 upstream) : None (None downstream)																							atcttataaacccagacagaa	0.000													11	424	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	2139326	2139327	+	IGR	INS	-	T	T	rs147297979	by1000genomes	TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr8:2139326_2139327insT								MYOM2 (45947 upstream) : CSMD1 (653549 downstream)																							cctttccttccccctcccttcc	0.223													2	4	---	---	---	---					
OPLAH	26873	broad.mit.edu	37	8	145117656	145117656	+	5'Flank	DEL	C	-	-	rs113567999		TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr8:145117656delC	uc003zar.3	-							NM_017570	NP_060040	O14841	OPLA_HUMAN	5-oxoprolinase (ATP-hydrolysing)								5-oxoprolinase (ATP-hydrolyzing) activity|ATP binding				0	all_cancers(97;1.06e-10)|all_epithelial(106;1.5e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;6.79e-41)|Epithelial(56;1.02e-39)|all cancers(56;2.24e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)		L-Glutamic Acid(DB00142)	CTGCCCTCCACCATCCCCAGC	0.652													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	138571478	138571479	+	IGR	INS	-	C	C			TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chr9:138571478_138571479insC								LCN9 (13723 upstream) : SOHLH1 (13778 downstream)																							CACTATCCCCTCCCCTCCCCAC	0.550													4	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	39784244	39784245	+	IGR	DEL	AC	-	-	rs72318417		TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chrX:39784244_39784245delAC								None (None upstream) : BCOR (126256 downstream)																							ccatacacatacacacacacac	0.272													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	112104068	112104069	+	IGR	INS	-	A	A	rs56190079		TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chrX:112104068_112104069insA								AMOT (20025 upstream) : None (None downstream)																							TGCGGGGGGAGGGGGGGCACAG	0.248													5	3	---	---	---	---					
SAGE1	55511	broad.mit.edu	37	X	134995047	134995047	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chrX:134995047delA	uc004ezh.2	+	20	2873	c.2706delA	c.(2704-2706)AGAfs	p.R902fs	SAGE1_uc010nry.1_3'UTR|SAGE1_uc011mvv.1_Frame_Shift_Del_p.R526fs	NM_018666	NP_061136	Q9NXZ1	SAGE1_HUMAN	sarcoma antigen 1	902										ovary(2)|skin(1)	3	Acute lymphoblastic leukemia(192;0.000127)					AGCACATGAGAAAAAGATAAT	0.368													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	Y	13842715	13842715	+	IGR	DEL	G	-	-			TCGA-EM-A3FK-01A-11D-A21A-08	TCGA-EM-A3FK-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	98d41d18-b4d1-478e-ac23-0eaaa4c5b8d5	23e0a545-3e41-486a-90d1-cc3d672e4a24	g.chrY:13842715delG								None (None upstream) : TTTY15 (931583 downstream)																							atcaacccgagtggaatggaa	0.000													16	2699	---	---	---	---					
