Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
WNT4	54361	broad.mit.edu	37	1	22447975	22447975	+	Silent	SNP	G	A	A			TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr1:22447975G>A	uc001bfs.3	-	3	512	c.408C>T	c.(406-408)TGC>TGT	p.C136C	WNT4_uc010odt.1_Silent_p.C73C	NM_030761	NP_110388	P56705	WNT4_HUMAN	wingless-type MMTV integration site family,	136					adrenal gland development|androgen biosynthetic process|anterior/posterior pattern formation|axis specification|branching involved in ureteric bud morphogenesis|canonical Wnt receptor signaling pathway|cellular response to transforming growth factor beta stimulus|dermatome development|endoderm development|epithelial to mesenchymal transition|establishment of protein localization in plasma membrane|female gonad development|female sex determination|liver development|male gonad development|mesonephric tubule development|metanephric mesenchymal cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of male gonad development|negative regulation of testicular blood vessel morphogenesis|negative regulation of testosterone biosynthetic process|negative regulation of transcription, DNA-dependent|oocyte development|paramesonephric duct development|positive regulation of aldosterone biosynthetic process|positive regulation of bone mineralization|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of collagen biosynthetic process|positive regulation of cortisol biosynthetic process|positive regulation of osteoblast differentiation|positive regulation of transcription, DNA-dependent|protein palmitoylation|renal vesicle formation|smooth muscle cell differentiation|somatotropin secreting cell differentiation|tertiary branching involved in mammary gland duct morphogenesis|thyroid-stimulating hormone-secreting cell differentiation|Wnt receptor signaling pathway, calcium modulating pathway	cell surface|extracellular space|Golgi apparatus|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|signal transducer activity|transcription corepressor activity			ovary(1)	1		Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;6.55e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;9.02e-26)|Colorectal(126;1.71e-07)|COAD - Colon adenocarcinoma(152;1.17e-05)|GBM - Glioblastoma multiforme(114;2.01e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000568)|KIRC - Kidney renal clear cell carcinoma(1967;0.00277)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.138)		TGTCACAGCCGCACTTCTCCA	0.672000													4	121	---	---	---	---	0	0	0.029380	0	0
SLC44A3	126969	broad.mit.edu	37	1	95290099	95290099	+	Silent	SNP	C	T	T			TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr1:95290099C>T	uc001dqv.3	+	3	293	c.186C>T	c.(184-186)CTC>CTT	p.L62L	SLC44A3_uc001dqx.3_Silent_p.L62L|SLC44A3_uc010otq.1_Silent_p.L26L|SLC44A3_uc010otr.1_Silent_p.L26L|SLC44A3_uc001dqw.3_Silent_p.L14L|SLC44A3_uc010ots.1_Silent_p.L14L|SLC44A3_uc009wds.2_5'UTR|SLC44A3_uc010ott.1_Silent_p.L14L|SLC44A3_uc010otu.1_5'Flank	NM_001114106	NP_001107578	Q8N4M1	CTL3_HUMAN	solute carrier family 44, member 3 isoform 1	62						integral to membrane|plasma membrane	choline transmembrane transporter activity			kidney(1)	1		all_lung(203;0.000712)|Lung NSC(277;0.00316)		all cancers(265;0.039)|Epithelial(280;0.124)	Choline(DB00122)	GAAGACTCCTCTTTGGCTATG	0.552000													6	120	---	---	---	---	0	0	0.047766	0	0
KDM5A	5927	broad.mit.edu	37	12	417066	417066	+	Missense_Mutation	SNP	T	G	G			TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr12:417066T>G	uc001qif.1	-	23	3847	c.3484A>C	c.(3484-3486)AAA>CAA	p.K1162Q	KDM5A_uc001qie.1_Missense_Mutation_p.K1162Q	NM_001042603	NP_001036068	P29375	KDM5A_HUMAN	retinoblastoma binding protein 2 isoform 1	1162	PHD-type 2.				chromatin modification|multicellular organismal development|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleolus	DNA binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)|ovary(1)	3						ATGCAAAATTTTACTTCTTCT	0.448000			T 	NUP98	AML								28	95	---	---	---	---	0	0	0.050027	0	0
TMEM132B	114795	broad.mit.edu	37	12	125834274	125834274	+	Missense_Mutation	SNP	A	G	G			TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr12:125834274A>G	uc001uhe.1	+	2	337	c.329A>G	c.(328-330)AAC>AGC	p.N110S		NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	110	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		GCCTTTGGAAACATGGACAAA	0.468000													4	114	---	---	---	---	0	0	0.009096	0	0
MAB21L1	4081	broad.mit.edu	37	13	36050055	36050055	+	Missense_Mutation	SNP	A	T	T			TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr13:36050055A>T	uc001uvc.2	-	1	778	c.221T>A	c.(220-222)TTT>TAT	p.F74Y	NBEA_uc001uvb.2_Intron|NBEA_uc010abi.2_Intron|NBEA_uc010tee.1_Intron|NBEA_uc010tef.1_5'Flank|NBEA_uc010teg.1_5'Flank	NM_005584	NP_005575	Q13394	MB211_HUMAN	mab-21-like protein 1	74					anatomical structure morphogenesis	nucleus				ovary(2)	2		Breast(139;0.014)|Lung SC(185;0.051)|Prostate(109;0.202)		all cancers(112;9.63e-08)|Epithelial(112;1.37e-06)|BRCA - Breast invasive adenocarcinoma(63;0.000659)|OV - Ovarian serous cystadenocarcinoma(117;0.00372)|GBM - Glioblastoma multiforme(144;0.115)		CACCACTTCAAATTCGGTGGG	0.572000													4	132	---	---	---	---	0	0	0.014758	0	0
ZFYVE26	23503	broad.mit.edu	37	14	68274320	68274320	+	Silent	SNP	G	A	A			TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr14:68274320G>A	uc001xka.2	-	5	820	c.681C>T	c.(679-681)TGC>TGT	p.C227C	ZFYVE26_uc010tsz.1_RNA|ZFYVE26_uc001xkc.3_Silent_p.C227C|ZFYVE26_uc010tta.1_Silent_p.C227C	NM_015346	NP_056161	Q68DK2	ZFY26_HUMAN	zinc finger, FYVE domain containing 26	227					cell cycle|cell death|cytokinesis|double-strand break repair via homologous recombination	centrosome|midbody	metal ion binding|phosphatidylinositol-3-phosphate binding|protein binding			ovary(9)|breast(2)	11				all cancers(60;0.000763)|OV - Ovarian serous cystadenocarcinoma(108;0.0011)|BRCA - Breast invasive adenocarcinoma(234;0.0115)		GTTCTGCGGGGCAACGCAGAG	0.622000													3	53	---	---	---	---	0	0	0.009096	0	0
SERPINA1	5265	broad.mit.edu	37	14	94849389	94849389	+	Silent	SNP	G	A	A			TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr14:94849389G>A	uc001ycx.3	-	2	447	c.186C>T	c.(184-186)TAC>TAT	p.Y62Y	SERPINA1_uc001ycw.3_RNA|SERPINA1_uc010auw.2_Silent_p.Y62Y|SERPINA1_uc010aux.2_Silent_p.Y62Y|SERPINA1_uc001ycy.3_Silent_p.Y62Y|SERPINA1_uc010auy.2_Silent_p.Y62Y|SERPINA1_uc001ycz.3_Silent_p.Y62Y|SERPINA1_uc010auz.2_Silent_p.Y62Y|SERPINA1_uc010ava.2_Silent_p.Y62Y|SERPINA1_uc001ydb.3_Silent_p.Y62Y|SERPINA1_uc010avb.2_Silent_p.Y62Y|SERPINA1_uc001ydc.3_Silent_p.Y62Y|SERPINA1_uc001yda.1_Silent_p.Y62Y	NM_000295	NP_000286	P01009	A1AT_HUMAN	serine proteinase inhibitor, clade A, member 1	62					acute-phase response|platelet activation|platelet degranulation|regulation of proteolysis	extracellular space|platelet alpha granule lumen|proteinaceous extracellular matrix	protease binding|serine-type endopeptidase inhibitor activity			skin(1)	1		all_cancers(154;0.0649)|all_epithelial(191;0.223)		Epithelial(152;0.135)|COAD - Colon adenocarcinoma(157;0.207)|all cancers(159;0.221)	Alpha-1-proteinase inhibitor(DB00058)	CCAGCTGGCGGTATAGGCTGA	0.547000									Alpha-1-Antitrypsin_Deficiency				4	157	---	---	---	---	0	0	0.014758	0	0
FAM82A2	55177	broad.mit.edu	37	15	41046872	41046872	+	Missense_Mutation	SNP	C	A	A			TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr15:41046872C>A	uc001zmo.1	-	2	254	c.110G>T	c.(109-111)CGG>CTG	p.R37L	FAM82A2_uc001zmp.1_Missense_Mutation_p.R37L|FAM82A2_uc001zmq.1_Missense_Mutation_p.R37L	NM_018145	NP_060615	Q96TC7	RMD3_HUMAN	family with sequence similarity 82, member A2	37					apoptosis|cell differentiation	integral to membrane|microtubule|mitochondrial membrane|nucleus|spindle pole	protein binding				0						ACGCTGGGTCCGTTTCCATCG	0.662000													3	64	---	---	---	---	0.00909568	0.00987531	0.009096	1	0
NEDD4	4734	broad.mit.edu	37	15	56207613	56207613	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr15:56207613T>C	uc002adj.2	-	1	1717	c.1417A>G	c.(1417-1419)AAG>GAG	p.K473E	NEDD4_uc002adl.2_Intron|NEDD4_uc002adi.2_Missense_Mutation_p.K473E|NEDD4_uc010ugj.1_Missense_Mutation_p.K473E|NEDD4_uc010bfm.2_Missense_Mutation_p.K473E|NEDD4_uc002adk.2_RNA	NM_198400	NP_006145	P46934	NEDD4_HUMAN	neural precursor cell expressed, developmentally	473					development involved in symbiotic interaction|glucocorticoid receptor signaling pathway|negative regulation of sodium ion transport|negative regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage|negative regulation of vascular endothelial growth factor receptor signaling pathway|neuron projection development|positive regulation of nucleocytoplasmic transport|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein catabolic process|progesterone receptor signaling pathway|protein K63-linked ubiquitination|protein targeting to lysosome|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|receptor catabolic process|receptor internalization|regulation of dendrite morphogenesis|response to calcium ion|transmission of virus	apicolateral plasma membrane|cell cortex|chromatin|cytosol|perinuclear region of cytoplasm|ubiquitin ligase complex	beta-2 adrenergic receptor binding|phosphoserine binding|phosphothreonine binding|proline-rich region binding|protein domain specific binding|RNA polymerase binding|sodium channel inhibitor activity|ubiquitin binding|ubiquitin-protein ligase activity			skin(2)|ovary(1)|breast(1)	4				all cancers(107;0.0299)|GBM - Glioblastoma multiforme(80;0.113)		CAATTGTGCTTAAGGCTGGAT	0.378000													5	89	---	---	---	---	0	0	0.014758	0	0
SLFN5	162394	broad.mit.edu	37	17	33586571	33586571	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr17:33586571G>A	uc002hjf.3	+	2	979	c.862G>A	c.(862-864)GCC>ACC	p.A288T	SLFN5_uc002hje.2_Missense_Mutation_p.A288T|SLFN5_uc010wcg.1_Missense_Mutation_p.A288T	NM_144975	NP_659412	Q08AF3	SLFN5_HUMAN	schlafen family member 5	288					cell differentiation		ATP binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0191)		TGATAAGGGGGCCCTCCGTGG	0.473000													4	167	---	---	---	---	0	0	0.014758	0	0
EML2	24139	broad.mit.edu	37	19	46124495	46124495	+	Silent	SNP	G	T	T			TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr19:46124495G>T	uc002pcn.2	-	11	1127	c.1092C>A	c.(1090-1092)TCC>TCA	p.S364S	EML2_uc002pco.2_RNA|EML2_uc002pcp.2_Silent_p.S248S|EML2_uc010xxl.1_Silent_p.S511S|EML2_uc010xxm.1_Silent_p.S565S|EML2_uc010xxn.1_RNA|EML2_uc010xxo.1_Silent_p.S364S|EML2_uc010ekj.2_Missense_Mutation_p.P331Q	NM_012155	NP_036287	O95834	EMAL2_HUMAN	echinoderm microtubule associated protein like	364					sensory perception of sound|visual perception	cytoplasm|intracellular membrane-bounded organelle|microtubule|microtubule associated complex	catalytic activity|protein binding			large_intestine(1)|ovary(1)	2		Ovarian(192;0.179)|all_neural(266;0.224)		OV - Ovarian serous cystadenocarcinoma(262;0.00553)|GBM - Glioblastoma multiforme(486;0.131)|Epithelial(262;0.197)		CTGTGTGCACGGAGCCCTGCA	0.443000													3	59	---	---	---	---	6.4e-05	7.15294e-05	0.115264	1	0
TULP2	7288	broad.mit.edu	37	19	49385438	49385438	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr19:49385438C>T	uc002pkz.2	-	12	1449	c.1298G>A	c.(1297-1299)CGT>CAT	p.R433H		NM_003323	NP_003314	O00295	TULP2_HUMAN	tubby like protein 2	433					visual perception	cytoplasm|extracellular region				ovary(1)|kidney(1)|skin(1)	3		all_epithelial(76;5.29e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000259)|all cancers(93;0.000435)|Epithelial(262;0.0221)|GBM - Glioblastoma multiforme(486;0.0234)		ACGTTGGTAACGACTCAGTAG	0.498000													8	24	---	---	---	---	0	0	0.069234	0	0
SLC5A6	8884	broad.mit.edu	37	2	27426733	27426733	+	Silent	SNP	G	A	A	rs59827696		TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr2:27426733G>A	uc002rjd.2	-	10	1399	c.1008C>T	c.(1006-1008)TTC>TTT	p.F336F	SLC5A6_uc010eyv.1_Silent_p.F336F	NM_021095	NP_066918	Q9Y289	SC5A6_HUMAN	solute carrier family 5 (sodium-dependent	336	Helical; (Potential).				biotin metabolic process|pantothenate metabolic process	integral to plasma membrane|membrane fraction	sodium-dependent multivitamin transmembrane transporter activity			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Biotin(DB00121)|Lipoic Acid(DB00166)	AGTACAGGACGAACTGCAAGC	0.592000													3	27	---	---	---	---	0	0	0.115264	0	0
C21orf99	149992	broad.mit.edu	37	21	14439208	14439208	+	RNA	SNP	A	G	G			TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr21:14439208A>G	uc002yja.3	+	10		c.2726A>G				NR_026916				Homo sapiens C21orf99 protein (C21orf99) mRNA, complete cds.												0						AAGAGAAGAAATGCCAATATA	0.299000													2	15	---	---	---	---	0	0	0.115264	0	0
NDUFV3	4731	broad.mit.edu	37	21	44329112	44329112	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr21:44329112G>A	uc002zcn.2	+	3	374	c.308G>A	c.(307-309)CGG>CAG	p.R103Q	NDUFV3_uc002zcm.2_Missense_Mutation_p.R468Q	NM_001001503	NP_001001503	P56181	NDUV3_HUMAN	NADH-ubiquinone oxidoreductase flavoprotein 3	103					mitochondrial electron transport, NADH to ubiquinone|transport	mitochondrial respiratory chain complex I|nucleus	NADH dehydrogenase (ubiquinone) activity			ovary(2)	2				STAD - Stomach adenocarcinoma(101;0.0606)	NADH(DB00157)	TCCTCAGGCCGGGAGTCACCT	0.512000													8	173	---	---	---	---	0	0	0.038147	0	0
KIAA1211	57482	broad.mit.edu	37	4	57189657	57189657	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr4:57189657G>A	uc003hbk.2	+	9	3693	c.3302G>A	c.(3301-3303)CGG>CAG	p.R1101Q	KIAA1211_uc010iha.2_Missense_Mutation_p.R1094Q	NM_020722	NP_065773	Q6ZU35	K1211_HUMAN	hypothetical protein LOC57482	1101										ovary(1)|skin(1)	2	Glioma(25;0.08)|all_neural(26;0.101)					AAGGGGTTTCGGGAGCAGCAG	0.522000													3	27	---	---	---	---	0	0	0.115264	0	0
LRP2BP	55805	broad.mit.edu	37	4	186291863	186291863	+	Silent	SNP	G	A	A			TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr4:186291863G>A	uc003ixj.1	-	7	1721	c.909C>T	c.(907-909)CAC>CAT	p.H303H	LRP2BP_uc003ixk.1_Silent_p.H277H|LRP2BP_uc011ckr.1_Silent_p.H303H	NM_018409	NP_060879	Q9P2M1	LR2BP_HUMAN	LRP2 binding protein	303	Sel1-like 6.					cytoplasm	protein binding				0		all_lung(41;1.3e-11)|Lung NSC(41;2.25e-11)|Melanoma(20;0.00109)|Colorectal(36;0.0215)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_hematologic(60;0.0749)		all cancers(43;2.14e-25)|Epithelial(43;1.55e-22)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-11)|BRCA - Breast invasive adenocarcinoma(30;8.01e-05)|GBM - Glioblastoma multiforme(59;0.000132)|STAD - Stomach adenocarcinoma(60;0.000766)|Colorectal(24;0.00116)|LUSC - Lung squamous cell carcinoma(40;0.00904)|COAD - Colon adenocarcinoma(29;0.0101)|READ - Rectum adenocarcinoma(43;0.161)		GACACCTTGCGTGGTAGAAGG	0.478000													5	98	---	---	---	---	0	0	0.029380	0	0
LECT2	3950	broad.mit.edu	37	5	135288629	135288629	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr5:135288629C>T	uc003lbe.1	-	2	275	c.74G>A	c.(73-75)TGT>TAT	p.C25Y		NM_002302	NP_002293	O14960	LECT2_HUMAN	leukocyte cell-derived chemotaxin 2 precursor	25					chemotaxis|skeletal system development	cytoplasm|extracellular space				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			CTTGCCAGCACATATATTAGC	0.517000													8	181	---	---	---	---	0	0	0.047766	0	0
ICK	22858	broad.mit.edu	37	6	52869962	52869962	+	Silent	SNP	G	A	A			TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr6:52869962G>A	uc003pbh.2	-	15	2374	c.1884C>T	c.(1882-1884)TAC>TAT	p.Y628Y	ICK_uc003pbi.2_Silent_p.Y628Y	NM_016513	NP_057597	Q9UPZ9	ICK_HUMAN	intestinal cell kinase	628					intracellular protein kinase cascade|multicellular organismal development	cytosol|nucleus	ATP binding|cyclin-dependent protein kinase activity|magnesium ion binding			ovary(1)|large_intestine(1)|lung(1)|kidney(1)|central_nervous_system(1)	5	Lung NSC(77;0.103)					GCCGAGATGCGTACTTGGAAG	0.567000													4	180	---	---	---	---	0	0	0.014758	0	0
TCP1	6950	broad.mit.edu	37	6	160205735	160205735	+	Silent	SNP	G	A	A			TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr6:160205735G>A	uc003qsr.2	-	6	868	c.633C>T	c.(631-633)ATC>ATT	p.I211I	TCP1_uc003qss.2_Silent_p.I56I|TCP1_uc010kjz.2_Silent_p.I211I|TCP1_uc003qst.2_Intron	NM_030752	NP_110379	P17987	TCPA_HUMAN	T-complex protein 1 isoform a	211					'de novo' posttranslational protein folding|tubulin complex assembly	cell junction|Golgi apparatus	ATP binding|unfolded protein binding			breast(1)	1		Breast(66;1.53e-05)|Ovarian(120;0.024)		OV - Ovarian serous cystadenocarcinoma(65;4.05e-20)|BRCA - Breast invasive adenocarcinoma(81;1.1e-06)		CATAGCCACTGATGAGCATAC	0.408000													36	86	---	---	---	---	0	0	0.111260	0	0
MKLN1	4289	broad.mit.edu	37	7	131012679	131012679	+	Silent	SNP	C	T	T	rs142689824	by1000genomes	TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr7:131012679C>T	uc011kpm.1	+	1	85	c.21C>T	c.(19-21)GTC>GTT	p.V7V	MKLN1_uc011kpl.1_Intron|MKLN1_uc010lmh.2_Silent_p.V7V|MKLN1_uc003vqs.2_5'UTR|uc003vqr.1_5'Flank	NM_013255	NP_037387	Q9UL63	MKLN1_HUMAN	muskelin 1, intracellular mediator containing	7					signal transduction	cytoplasm	protein binding			breast(1)	1	Melanoma(18;0.162)					GCGGAGCTGTCGCTGCGGCGC	0.667000													7	64	---	---	---	---	0	0	0.038147	0	0
CSMD1	64478	broad.mit.edu	37	8	2832078	2832078	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr8:2832078C>T	uc011kwk.1	-	56	9028	c.8638G>A	c.(8638-8640)GCC>ACC	p.A2880T	CSMD1_uc011kwj.1_Missense_Mutation_p.A2209T|CSMD1_uc010lrg.2_Missense_Mutation_p.A890T	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2880	Sushi 21.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TGCACGACGGCGCCATAGGTA	0.557000													6	22	---	---	---	---	0	0	0.029380	0	0
STX17	55014	broad.mit.edu	37	9	102713485	102713485	+	Silent	SNP	A	G	G			TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr9:102713485A>G	uc004bal.3	+	4	469	c.333A>G	c.(331-333)GAA>GAG	p.E111E	STX17_uc004bak.2_Silent_p.E111E|STX17_uc010msx.2_RNA|STX17_uc011lvd.1_RNA	NM_017919	NP_060389	P56962	STX17_HUMAN	syntaxin 17	111	Potential.|Cytoplasmic (Potential).				intracellular protein transport|vesicle-mediated transport	endoplasmic reticulum|integral to membrane|nucleolus	SNAP receptor activity			large_intestine(1)	1		Acute lymphoblastic leukemia(62;0.0559)|all_hematologic(171;0.189)				TCCATTTGGAATCTGTAGAAG	0.393000													11	40	---	---	---	---	0	0	0.093190	0	0
AMOT	154796	broad.mit.edu	37	X	112054552	112054552	+	Missense_Mutation	SNP	C	A	A			TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chrX:112054552C>A	uc004epr.2	-	3	1462	c.1462G>T	c.(1462-1464)GCC>TCC	p.A488S	AMOT_uc004eps.2_Missense_Mutation_p.A79S|AMOT_uc004ept.1_Missense_Mutation_p.A488S	NM_001113490	NP_001106962	Q4VCS5	AMOT_HUMAN	angiomotin isoform 1	488	Potential.				actin cytoskeleton organization|cell-cell junction assembly|negative regulation of angiogenesis|negative regulation of vascular permeability|positive regulation of blood vessel endothelial cell migration|positive regulation of cell size|positive regulation of stress fiber assembly|regulation of cell migration	actin filament|cell surface|cytoplasm|endocytic vesicle|external side of plasma membrane|integral to membrane|lamellipodium|ruffle|stress fiber|tight junction|tight junction	angiostatin binding|protein binding|receptor activity			ovary(1)	1						TTCTCTAGGGCCTCTCTTTTG	0.478000													6	150	---	---	---	---	2.74318e-10	3.25753e-10	0.058154	1	0
PCSK9	255738	broad.mit.edu	37	1	55505553	55505555	+	In_Frame_Del	DEL	CTG	-	-	rs67610340		TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr1:55505553_55505555delCTG	uc001cyf.1	+	1	334_336	c.43_45delCTG	c.(43-45)CTGdel	p.L23del	PCSK9_uc010ool.1_RNA|PCSK9_uc010oom.1_5'Flank	NM_174936	NP_777596	Q8NBP7	PCSK9_HUMAN	proprotein convertase subtilisin/kexin type 9	23			L -> LL (this polymoprhism seems to have a modifier effect on LDLR mutation and familial hypercholesterolemia).		cellular response to insulin stimulus|cellular response to starvation|cholesterol homeostasis|cholesterol metabolic process|kidney development|liver development|low-density lipoprotein particle receptor catabolic process|lysosomal transport|negative regulation of catalytic activity|negative regulation of low-density lipoprotein particle clearance|negative regulation of receptor recycling|neuron differentiation|positive regulation of neuron apoptosis|positive regulation of receptor internalization|protein autoprocessing|regulation of receptor activity	extracellular space|late endosome|lysosome|perinuclear region of cytoplasm	apolipoprotein receptor binding|identical protein binding|low-density lipoprotein particle receptor binding|serine-type endopeptidase activity|very-low-density lipoprotein particle receptor binding			ovary(2)|central_nervous_system(1)|skin(1)	4						gccgctgccactgctgctgctgc	0.581													2	4	---	---	---	---					
IGSF8	93185	broad.mit.edu	37	1	160068651	160068652	+	5'Flank	INS	-	C	C			TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr1:160068651_160068652insC	uc001fva.2	-						IGSF8_uc001fuz.2_5'Flank|IGSF8_uc009wtf.2_5'Flank	NM_052868	NP_443100	Q969P0	IGSF8_HUMAN	immunoglobulin superfamily, member 8						cell proliferation|cellular component movement|nervous system development|single fertilization|skeletal muscle tissue development	integral to membrane	protein binding				0	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			Tcccagccccgccccggccccg	0.218													2	4	---	---	---	---					
NHLRC2	374354	broad.mit.edu	37	10	115614727	115614727	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr10:115614727delG	uc001lax.1	+	1	308	c.96delG	c.(94-96)CAGfs	p.Q32fs	DCLRE1A_uc001law.2_5'Flank	NM_198514	NP_940916	Q8NBF2	NHLC2_HUMAN	NHL repeat containing 2	32					cell redox homeostasis					ovary(1)	1				Epithelial(162;0.017)|all cancers(201;0.0187)		TTACCCAGCAGGAGAAGGACA	0.672													2	4	---	---	---	---					
C11orf95	65998	broad.mit.edu	37	11	63531514	63531516	+	In_Frame_Del	DEL	CTC	-	-			TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr11:63531514_63531516delCTC	uc010rmv.1	-	4	1598_1600	c.1579_1581delGAG	c.(1579-1581)GAGdel	p.E527del	C11orf95_uc001nxr.2_Intron|C11orf95_uc001nxs.2_Intron	NM_001144936	NP_001138408	C9JLR9	CK095_HUMAN	hypothetical protein LOC65998	527	Pro-rich.|Glu-rich.					intracellular	zinc ion binding				0						GCTCACCCCActcctcctcctcc	0.547													3	5	---	---	---	---					
DNAH10	196385	broad.mit.edu	37	12	124356031	124356031	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr12:124356031delC	uc001uft.3	+	44	7338	c.7313delC	c.(7312-7314)ACCfs	p.T2438fs		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	2438	AAA 3 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		ACTCGGACTACCTGGATATTG	0.433													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	14	20086382	20086383	+	IGR	INS	-	AAAA	AAAA			TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr14:20086382_20086383insAAAA								P704P (66110 upstream) : OR4Q3 (129204 downstream)																							TCTTACAAGGTAAAAAAAATGA	0.312													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	14	52539083	52539085	+	IGR	DEL	ACC	-	-			TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr14:52539083_52539085delACC								NID2 (3137 upstream) : PTGDR (195346 downstream)																							tgcttcccttaccaccaccacca	0.000													2	4	---	---	---	---					
CTSH	1512	broad.mit.edu	37	15	79237967	79237968	+	5'Flank	INS	-	T	T	rs71148581		TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr15:79237967_79237968insT	uc002ben.2	-						CTSH_uc010unf.1_5'Flank|CTSH_uc010bll.1_5'Flank|CTSH_uc010ung.1_5'Flank	NM_148979	NP_683880	P09668	CATH_HUMAN	cathepsin H isoform b precursor						protein destabilization|proteolysis	lysosome	cysteine-type endopeptidase activity			central_nervous_system(2)|large_intestine(1)	3						ctcccacccccatgtccctgcc	0.158													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	60805051	60805051	+	IGR	DEL	T	-	-			TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr16:60805051delT								None (None upstream) : CDH8 (882184 downstream)																							ggcaggaggattttatttagg	0.114													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	71645685	71645686	+	IGR	DEL	AG	-	-			TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr17:71645685_71645686delAG								SDK2 (5458 upstream) : C17orf54 (99723 downstream)																							agagagagcaagagagagagag	0.089													4	7	---	---	---	---					
Unknown	0	broad.mit.edu	37	18	76095354	76095356	+	IGR	DEL	GGA	-	-			TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr18:76095354_76095356delGGA								None (None upstream) : SALL3 (644919 downstream)																							ggggctacagggaggaggaggag	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	1747440	1747441	+	IGR	DEL	AC	-	-			TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr19:1747440_1747441delAC								TCF3 (95114 upstream) : ONECUT3 (6221 downstream)																							acacacacatacacacacacac	0.564													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	4750055	4750056	+	IGR	DEL	CA	-	-	rs71930528	by1000genomes	TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr19:4750055_4750056delCA								DPP9 (26200 upstream) : C19orf30 (19061 downstream)																							catgcgcgtgcacacacacaca	0.203													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	20625415	20625417	+	IGR	DEL	CAG	-	-			TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr2:20625415_20625417delCAG								PUM2 (74952 upstream) : RHOB (21418 downstream)																							TTTGGTCACAcagcagcagcagc	0.241													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	129402372	129402373	+	IGR	DEL	CT	-	-			TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr2:129402372_129402373delCT								HS6ST1 (326201 upstream) : None (None downstream)																							tccttcctgcctctctctctcc	0.000													2	4	---	---	---	---					
ACVR1	90	broad.mit.edu	37	2	158732859	158732859	+	5'Flank	DEL	G	-	-			TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr2:158732859delG	uc002tzn.3	-						ACVR1_uc010fog.2_5'Flank	NM_001105	NP_001096	Q04771	ACVR1_HUMAN	activin A receptor, type I precursor						BMP signaling pathway|G1/S transition of mitotic cell cycle|negative regulation of activin receptor signaling pathway|negative regulation of apoptosis|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|positive regulation of transcription, DNA-dependent|transforming growth factor beta receptor signaling pathway	activin receptor complex	activin binding|ATP binding|follistatin binding|metal ion binding|protein homodimerization activity|SMAD binding|transforming growth factor beta binding			ovary(2)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.104)	Adenosine triphosphate(DB00171)	CGGAGCGggaggagcgggagg	0.572													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	28516210	28516211	+	IGR	DEL	GC	-	-	rs148404345		TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr21:28516210_28516211delGC								ADAMTS5 (176771 upstream) : NCRNA00113 (578487 downstream)																							CGGCCAGCGGGCGCGCGCGGAA	0.693													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	46970827	46970828	+	IGR	INS	-	C	C			TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr21:46970827_46970828insC								SLC19A1 (6502 upstream) : PCBP3 (92855 downstream)																							accgccccccaccctccccccg	0.054													2	4	---	---	---	---					
TXN2	25828	broad.mit.edu	37	22	36878232	36878233	+	5'Flank	INS	-	G	G			TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr22:36878232_36878233insG	uc003apk.1	-						TXN2_uc003apl.1_5'Flank	NM_012473	NP_036605	Q99757	THIOM_HUMAN	thioredoxin 2 precursor						cell redox homeostasis|electron transport chain|glycerol ether metabolic process|transport	mitochondrion|nucleolus	electron carrier activity				0						cggaaacggaaggggtgggcgg	0.342													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	197988	197990	+	IGR	DEL	CCC	-	-	rs66667221		TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr5:197988_197990delCCC								LRRC14B (2520 upstream) : CCDC127 (6885 downstream)																							ACCCCAGGGGCCCCCATGTCACC	0.690													5	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	89515187	89515187	+	IGR	DEL	C	-	-			TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr5:89515187delC								None (None upstream) : CETN3 (174344 downstream)																							ggaggaggagcgggaggagga	0.114													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	5923958	5923960	+	IGR	DEL	ATC	-	-			TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr6:5923958_5923960delATC								FARS2 (152142 upstream) : NRN1 (74275 downstream)																							caccgccattatcatcatcacag	0.158													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	109649160	109649160	+	IGR	DEL	T	-	-			TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr6:109649160delT								C6orf182 (164047 upstream) : CD164 (38558 downstream)																							ACCCCTTTAAttttttttttt	0.214													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	167920547	167920548	+	IGR	INS	-	C	C			TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr6:167920547_167920548insC								TCP10 (122549 upstream) : C6orf123 (264673 downstream)																							tcccctcccttccctgtcccct	0.000													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	22813189	22813189	+	IGR	DEL	T	-	-			TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr7:22813189delT								IL6 (41570 upstream) : TOMM7 (39065 downstream)																							CCCTACACTCTTTTTTTTTAA	0.363													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	126899660	126899662	+	IGR	DEL	CAC	-	-			TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chr7:126899660_126899662delCAC								GRM8 (6513 upstream) : ZNF800 (110692 downstream)																							ctaccaccatcaccaccaccacc	0.000													3	6	---	---	---	---					
ASMTL	8623	broad.mit.edu	37	X	1572243	1572244	+	5'Flank	INS	-	C	C			TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chrX:1572243_1572244insC	uc004cpx.1	-						ASMTL_uc011mhe.1_5'Flank|ASMTL_uc004cpy.1_5'Flank|ASMTL_uc011mhf.1_Intron	NM_004192	NP_004183	O95671	ASML_HUMAN	acetylserotonin O-methyltransferase-like						melatonin biosynthetic process	cytoplasm	acetylserotonin O-methyltransferase activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				cccgcccgcctcccccccgggc	0.054													2	4	---	---	---	---					
SRPX	8406	broad.mit.edu	37	X	38079976	38079978	+	In_Frame_Del	DEL	GCA	-	-	rs72249350		TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chrX:38079976_38079978delGCA	uc004ddy.1	-	1	154_156	c.68_70delTGC	c.(67-72)CTGCGC>CGC	p.L23del	SRPX_uc004ddz.1_In_Frame_Del_p.L23del|SRPX_uc011mkh.1_In_Frame_Del_p.L23del|SRPX_uc011mki.1_In_Frame_Del_p.L23del	NM_006307	NP_006298	P78539	SRPX_HUMAN	sushi-repeat-containing protein, X-linked	23			Missing.		cell adhesion	cell surface|membrane					0						GGCGGGACGCgcagcagcagcag	0.576											OREG0019726	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	12	---	---	---	---					
NXT2	55916	broad.mit.edu	37	X	108778454	108778455	+	5'Flank	INS	-	GAG	GAG	rs78047616		TCGA-EM-A3FL-01A-11D-A21A-08	TCGA-EM-A3FL-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bbb522d-e224-4b3f-9e10-3a47d06b2b05	edbd0ee1-d300-4fbc-a490-29b3648fd480	g.chrX:108778454_108778455insGAG	uc004eof.1	+						NXT2_uc004eoe.1_5'Flank|NXT2_uc004eog.1_5'Flank	NM_018698	NP_061168	Q9NPJ8	NXT2_HUMAN	nuclear transport factor 2-like export factor 2						mRNA transport|protein transport	cytoplasm|nucleus				ovary(1)	1						aaaaagaagaagaggaggagga	0.069													6	2	---	---	---	---					
