Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CROCCL1	84809	broad.mit.edu	37	1	16973965	16973965	+	5'Flank	SNP	G	A	A			TCGA-EM-A3OA-01A-11D-A21Z-08	TCGA-EM-A3OA-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	bae43697-a5d2-4d7f-a5e4-83f011897f7e	1c8fb071-d66d-4f56-8886-a5720badd2ff	g.chr1:16973965G>A	uc001azg.1	-						CROCCL1_uc001azi.1_5'Flank|MST1P2_uc009vow.2_RNA|MST1P2_uc010ocg.1_RNA|MST1P2_uc010och.1_RNA|MST1P2_uc010oci.1_RNA|MST1P2_uc001azk.2_RNA|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA					Homo sapiens mRNA for FLJ00313 protein.												0						CAGGTTCCTCGACCAAGGTCT	0.617000													7	74	---	---	---	---	0	0	0.069234	0	0
NRAS	4893	broad.mit.edu	37	1	115256530	115256530	+	Missense_Mutation	SNP	G	T	T	rs121913254		TCGA-EM-A3OA-01A-11D-A21Z-08	TCGA-EM-A3OA-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	bae43697-a5d2-4d7f-a5e4-83f011897f7e	1c8fb071-d66d-4f56-8886-a5720badd2ff	g.chr1:115256530G>T	uc009wgu.2	-	3	435	c.181C>A	c.(181-183)CAA>AAA	p.Q61K		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TACTCTTCTTGTCCAGCTGTA	0.458000	Q61K(HT1080_SOFT_TISSUE)|Q61K(OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(SKNAS_AUTONOMIC_GANGLIA)|Q61K(HCC15_LUNG)|Q61K(TYKNU_OVARY)|Q61K(SKNSH_AUTONOMIC_GANGLIA)|Q61K(HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(NCIH2087_LUNG)|Q61K(CHP212_AUTONOMIC_GANGLIA)|Q61K(HS944T_SKIN)|Q61K(M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(HS936T_SKIN)|Q61K(NCIH1299_LUNG)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			99	116	---	---	---	---	2.65435e-51	3.17047e-51	0.048971	1	0
JMJD1C	221037	broad.mit.edu	37	10	64973724	64973724	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EM-A3OA-01A-11D-A21Z-08	TCGA-EM-A3OA-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	bae43697-a5d2-4d7f-a5e4-83f011897f7e	1c8fb071-d66d-4f56-8886-a5720badd2ff	g.chr10:64973724G>A	uc001jmn.2	-	8	2503	c.2203C>T	c.(2203-2205)CAG>TAG	p.Q735*	JMJD1C_uc001jml.2_Nonsense_Mutation_p.Q516*|JMJD1C_uc001jmm.2_Nonsense_Mutation_p.Q447*|JMJD1C_uc010qiq.1_Nonsense_Mutation_p.Q553*|JMJD1C_uc009xpi.2_Nonsense_Mutation_p.Q553*|JMJD1C_uc009xpj.1_RNA|JMJD1C_uc001jmp.1_Nonsense_Mutation_p.Q447*	NM_032776	NP_116165	Q15652	JHD2C_HUMAN	jumonji domain containing 1C isoform a	735					blood coagulation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	histone demethylase activity (H3-K9 specific)|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|thyroid hormone receptor binding			ovary(4)|breast(1)|central_nervous_system(1)	6	Prostate(12;0.0119)|all_hematologic(501;0.191)					AAAGGATGCTGGCTTAGGAAA	0.418000													18	93	---	---	---	---	0	0	0.049695	0	0
OR4X1	390113	broad.mit.edu	37	11	48286142	48286142	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A3OA-01A-11D-A21Z-08	TCGA-EM-A3OA-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	bae43697-a5d2-4d7f-a5e4-83f011897f7e	1c8fb071-d66d-4f56-8886-a5720badd2ff	g.chr11:48286142G>A	uc010rht.1	+	1	730	c.730G>A	c.(730-732)GTT>ATT	p.V244I		NM_001004726	NP_001004726	Q8NH49	OR4X1_HUMAN	olfactory receptor, family 4, subfamily X,	244	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3						TCATGTCACAGTTGTCGACCT	0.517000													12	150	---	---	---	---	0	0	0.020292	0	0
MIR1291	100302221	broad.mit.edu	37	12	49048239	49048239	+	RNA	SNP	C	A	A			TCGA-EM-A3OA-01A-11D-A21Z-08	TCGA-EM-A3OA-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	bae43697-a5d2-4d7f-a5e4-83f011897f7e	1c8fb071-d66d-4f56-8886-a5720badd2ff	g.chr12:49048239C>A	hsa-mir-1291|MI0006353	-			c.75C>A			C12orf41_uc001rrw.2_Intron|C12orf41_uc001rrz.2_Intron|C12orf41_uc001rrx.2_Intron|C12orf41_uc001rry.2_Intron|C12orf41_uc001rru.2_Intron|C12orf41_uc001rrv.2_Intron|SNORA34_uc001rsa.1_RNA																	0						GGAAGACAGTCCTTTAGGCCT	0.498000													11	50	---	---	---	---	3.07112e-06	3.47521e-06	0.080935	1	0
TUBA1A	7846	broad.mit.edu	37	12	49580524	49580524	+	Silent	SNP	G	A	A	rs139102191	byFrequency	TCGA-EM-A3OA-01A-11D-A21Z-08	TCGA-EM-A3OA-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	bae43697-a5d2-4d7f-a5e4-83f011897f7e	1c8fb071-d66d-4f56-8886-a5720badd2ff	g.chr12:49580524G>A	uc009zlf.2	-	2	368	c.96C>T	c.(94-96)CCC>CCT	p.P32P	TUBA1B_uc001rto.2_5'UTR|TUBA1A_uc001rtp.2_Silent_p.P32P|TUBA1A_uc001rtq.2_5'UTR|TUBA1A_uc001rtr.2_5'UTR|TUBA1A_uc009zlg.2_Intron	NM_006009	NP_006000	Q71U36	TBA1A_HUMAN	tubulin, alpha 1a	32					'de novo' posttranslational protein folding|G2/M transition of mitotic cell cycle|microtubule-based movement|protein polymerization	cytosol|microtubule	GTP binding|GTPase activity|structural molecule activity				0						TCTGGCCATCGGGCTGGATGC	0.602000													7	136	---	---	---	---	0	0	0.058154	0	0
TUBA3C	7278	broad.mit.edu	37	13	19751149	19751149	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A3OA-01A-11D-A21Z-08	TCGA-EM-A3OA-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	bae43697-a5d2-4d7f-a5e4-83f011897f7e	1c8fb071-d66d-4f56-8886-a5720badd2ff	g.chr13:19751149G>A	uc009zzj.2	-	4	1023	c.974C>T	c.(973-975)CCG>CTG	p.P325L		NM_006001	NP_005992	Q13748	TBA3C_HUMAN	tubulin, alpha 3c	325					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(3)|skin(2)	5		all_cancers(29;1.31e-20)|all_epithelial(30;1.59e-20)|all_lung(29;6.91e-20)|Lung NSC(5;9.25e-17)|Hepatocellular(1;0.0207)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;6.78e-06)|Epithelial(112;3.79e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00172)|Lung(94;0.0186)|LUSC - Lung squamous cell carcinoma(192;0.108)		GACATCTTTCGGGACCACATC	0.542000													4	164	---	---	---	---	0	0	0.009096	0	0
GOLGA6L5	374650	broad.mit.edu	37	15	85053142	85053142	+	RNA	SNP	C	T	T			TCGA-EM-A3OA-01A-11D-A21Z-08	TCGA-EM-A3OA-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	bae43697-a5d2-4d7f-a5e4-83f011897f7e	1c8fb071-d66d-4f56-8886-a5720badd2ff	g.chr15:85053142C>T	uc002bkm.2	-	9		c.1905G>A			uc002bkl.1_5'Flank	NR_003246				Homo sapiens cDNA FLJ33459 fis, clone BRAMY2000585.												0						TTTTTCAATTCCTTGACCCGC	0.393000													6	8	---	---	---	---	0	0	0.038147	0	0
Unknown	0	broad.mit.edu	37	15	102300091	102300091	+	5'Flank	SNP	A	G	G			TCGA-EM-A3OA-01A-11D-A21Z-08	TCGA-EM-A3OA-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	bae43697-a5d2-4d7f-a5e4-83f011897f7e	1c8fb071-d66d-4f56-8886-a5720badd2ff	g.chr15:102300091A>G	uc002bzk.2	-						uc002bzn.2_5'Flank|uc010uso.1_5'Flank|uc002bzs.2_5'Flank|uc010usv.1_5'Flank|uc002cam.2_RNA|uc010usx.1_5'Flank|uc002cao.2_5'Flank|uc002cap.2_5'Flank|uc002caq.2_5'Flank|uc010usz.1_5'Flank|uc010uta.1_5'Flank|uc002cas.2_5'Flank|uc002cat.1_5'Flank|uc002cau.2_5'Flank|uc010utb.1_5'Flank|uc002cav.2_5'Flank|uc002caw.2_5'Flank|uc002cax.2_5'Flank|uc010utc.1_5'Flank|uc002cay.2_5'Flank|uc002cbb.2_5'Flank|uc002cbc.1_5'Flank|uc002cbd.2_5'Flank|uc002cbe.2_5'Flank|uc002cbg.2_5'Flank|uc002cbh.2_5'Flank|uc002cbi.2_5'Flank|uc002cbk.2_5'Flank|uc002cbl.2_5'Flank|uc010utd.1_5'Flank|uc002cbm.2_5'Flank|uc002cbn.2_5'Flank|uc010ute.1_5'Flank					DQ593627																		GAAGACACTCATGGAGGAGTC	0.582000													3	8	---	---	---	---	0	0	0.004672	0	0
ZNF785	146540	broad.mit.edu	37	16	30594124	30594124	+	Silent	SNP	G	A	A			TCGA-EM-A3OA-01A-11D-A21Z-08	TCGA-EM-A3OA-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	bae43697-a5d2-4d7f-a5e4-83f011897f7e	1c8fb071-d66d-4f56-8886-a5720badd2ff	g.chr16:30594124G>A	uc002dyw.1	-	3	1053	c.975C>T	c.(973-975)TCC>TCT	p.S325S	uc002dyu.2_RNA|ZNF785_uc002dyv.1_Silent_p.S310S|ZNF785_uc010vez.1_Silent_p.S290S	NM_152458	NP_689671	A8K8V0	ZN785_HUMAN	zinc finger protein 785	325	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TGAGGAGGAGGGAAGAATAGG	0.642000													8	76	---	---	---	---	0	0	0.038147	0	0
Unknown	0	broad.mit.edu	37	16	70268158	70268158	+	RNA	SNP	A	C	C			TCGA-EM-A3OA-01A-11D-A21Z-08	TCGA-EM-A3OA-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	bae43697-a5d2-4d7f-a5e4-83f011897f7e	1c8fb071-d66d-4f56-8886-a5720badd2ff	g.chr16:70268158A>C	uc010cfp.1	-	3		c.257T>G								Homo sapiens cDNA, FLJ98908.																		TTCTTCATTAAAACAGCTACT	0.333000													3	15	---	---	---	---	0	0	0.004672	0	0
MFSD6L	162387	broad.mit.edu	37	17	8701591	8701591	+	Missense_Mutation	SNP	C	G	G			TCGA-EM-A3OA-01A-11D-A21Z-08	TCGA-EM-A3OA-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	bae43697-a5d2-4d7f-a5e4-83f011897f7e	1c8fb071-d66d-4f56-8886-a5720badd2ff	g.chr17:8701591C>G	uc002glp.1	-	1	996	c.848G>C	c.(847-849)CGA>CCA	p.R283P		NM_152599	NP_689812	Q8IWD5	MFS6L_HUMAN	major facilitator superfamily domain containing	283						integral to membrane				central_nervous_system(1)	1						GCTTCTGTATCGGTCAGTGGC	0.592000													10	99	---	---	---	---	0	0	0.069234	0	0
ASPSCR1	79058	broad.mit.edu	37	17	79952715	79952715	+	Silent	SNP	C	T	T			TCGA-EM-A3OA-01A-11D-A21Z-08	TCGA-EM-A3OA-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	bae43697-a5d2-4d7f-a5e4-83f011897f7e	1c8fb071-d66d-4f56-8886-a5720badd2ff	g.chr17:79952715C>T	uc002kcx.2	+	5	490	c.393C>T	c.(391-393)CCC>CCT	p.P131P	ASPSCR1_uc002kcw.1_Silent_p.P131P|ASPSCR1_uc002kcy.2_Silent_p.P131P|ASPSCR1_uc002kcz.2_Silent_p.P131P|ASPSCR1_uc002kda.2_Silent_p.P54P|ASPSCR1_uc002kdb.1_Silent_p.P54P	NM_024083	NP_076988	Q9BZE9	ASPC1_HUMAN	alveolar soft part sarcoma chromosome region,	131							protein binding		ASPSCR1/TFE3(161)	soft_tissue(118)|kidney(43)|breast(1)	162	all_neural(118;0.0878)|Ovarian(332;0.12)|all_lung(278;0.246)		BRCA - Breast invasive adenocarcinoma(99;0.0114)|OV - Ovarian serous cystadenocarcinoma(97;0.0191)			TGCAGCACCCCGGCGGGGCCA	0.647000			T	TFE3	alveolar soft part sarcoma								30	64	---	---	---	---	0	0	0.086207	0	0
KIAA1632	57724	broad.mit.edu	37	18	43532379	43532379	+	Silent	SNP	G	A	A			TCGA-EM-A3OA-01A-11D-A21Z-08	TCGA-EM-A3OA-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	bae43697-a5d2-4d7f-a5e4-83f011897f7e	1c8fb071-d66d-4f56-8886-a5720badd2ff	g.chr18:43532379G>A	uc002lbm.2	-	3	1339	c.1239C>T	c.(1237-1239)CAC>CAT	p.H413H	KIAA1632_uc002lbo.1_Silent_p.H413H	NM_020964	NP_066015	Q9HCE0	EPG5_HUMAN	hypothetical protein LOC57724	413					autophagy						0						GGCCTTGCTGGTGAATTGCTG	0.393000													62	92	---	---	---	---	0	0	0.048971	0	0
DYRK1B	9149	broad.mit.edu	37	19	40318195	40318195	+	Silent	SNP	A	G	G			TCGA-EM-A3OA-01A-11D-A21Z-08	TCGA-EM-A3OA-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	bae43697-a5d2-4d7f-a5e4-83f011897f7e	1c8fb071-d66d-4f56-8886-a5720badd2ff	g.chr19:40318195A>G	uc002omj.2	-	7	1189	c.909T>C	c.(907-909)CTT>CTC	p.L303L	DYRK1B_uc002omi.2_Silent_p.L303L|DYRK1B_uc002omk.2_Silent_p.L303L	NM_004714	NP_004705	Q9Y463	DYR1B_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	303	Protein kinase.				positive regulation of transcription, DNA-dependent	nucleus	ATP binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|transcription coactivator activity			ovary(4)|stomach(1)|central_nervous_system(1)|skin(1)	7	all_cancers(60;5.79e-06)|all_lung(34;5.2e-08)|Lung NSC(34;6.14e-08)|Ovarian(47;0.06)		Epithelial(26;5.74e-25)|OV - Ovarian serous cystadenocarcinoma(5;3.13e-24)|all cancers(26;8.59e-23)			GCATCTCCACAAGGATGCAGC	0.627000													3	64	---	---	---	---	0	0	0.009096	0	0
CABP5	56344	broad.mit.edu	37	19	48537535	48537535	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A3OA-01A-11D-A21Z-08	TCGA-EM-A3OA-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	bae43697-a5d2-4d7f-a5e4-83f011897f7e	1c8fb071-d66d-4f56-8886-a5720badd2ff	g.chr19:48537535G>A	uc002phu.1	-	5	558	c.433C>T	c.(433-435)CGG>TGG	p.R145W		NM_019855	NP_062829	Q9NP86	CABP5_HUMAN	calcium binding protein 5	145	EF-hand 4.				signal transduction	cytoplasm	calcium ion binding			skin(1)	1		all_cancers(25;1.86e-08)|all_lung(116;1.14e-06)|all_epithelial(76;1.16e-06)|Lung NSC(112;2.54e-06)|all_neural(266;0.0138)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;4.09e-05)|all cancers(93;0.000322)|Epithelial(262;0.01)|GBM - Glioblastoma multiforme(486;0.058)		GAGATCTCCCGGGGGGTGAGC	0.592000													4	54	---	---	---	---	0	0	0.009096	0	0
C2orf39	92749	broad.mit.edu	37	2	26654829	26654829	+	Silent	SNP	C	T	T			TCGA-EM-A3OA-01A-11D-A21Z-08	TCGA-EM-A3OA-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	bae43697-a5d2-4d7f-a5e4-83f011897f7e	1c8fb071-d66d-4f56-8886-a5720badd2ff	g.chr2:26654829C>T	uc002rhg.2	+	7	917	c.843C>T	c.(841-843)TGC>TGT	p.C281C	C2orf39_uc010eym.1_RNA	NM_145038	NP_659475	Q96MC2	CC164_HUMAN	hypothetical protein LOC92749	281	Potential.										0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TCTGGGATTGCGAAGAATACA	0.512000													6	51	---	---	---	---	0	0	0.021553	0	0
LOC728323	728323	broad.mit.edu	37	2	243061143	243061143	+	RNA	SNP	A	G	G	rs117509304	by1000genomes	TCGA-EM-A3OA-01A-11D-A21Z-08	TCGA-EM-A3OA-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	bae43697-a5d2-4d7f-a5e4-83f011897f7e	1c8fb071-d66d-4f56-8886-a5720badd2ff	g.chr2:243061143A>G	uc010zpd.1	+	4		c.381A>G			LOC728323_uc010zpe.1_RNA|LOC728323_uc010zpf.1_RNA|LOC728323_uc010zpg.1_RNA	NR_024437				Homo sapiens cDNA FLJ60027 complete cds, moderately similar to F-box only protein 25.												0						CTTGGGAGAAACCTTTAATCG	0.358000													4	87	---	---	---	---	0	0	0.009096	0	0
SNTA1	6640	broad.mit.edu	37	20	32026782	32026782	+	Silent	SNP	A	G	G			TCGA-EM-A3OA-01A-11D-A21Z-08	TCGA-EM-A3OA-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	bae43697-a5d2-4d7f-a5e4-83f011897f7e	1c8fb071-d66d-4f56-8886-a5720badd2ff	g.chr20:32026782A>G	uc002wzd.1	-	2	633	c.361T>C	c.(361-363)TTG>CTG	p.L121L	SNTA1_uc010zuf.1_Silent_p.L121L	NM_003098	NP_003089	Q13424	SNTA1_HUMAN	acidic alpha 1 syntrophin	121	PH 1.|PDZ.				muscle contraction	cell junction|cytoplasm|cytoskeleton|sarcolemma	actin binding|calmodulin binding			skin(1)	1						TCAGCTGCCAATCCCTTGAAG	0.527000													32	127	---	---	---	---	0	0	0.069456	0	0
BCAS1	8537	broad.mit.edu	37	20	52561526	52561526	+	Silent	SNP	G	T	T	rs147771144		TCGA-EM-A3OA-01A-11D-A21Z-08	TCGA-EM-A3OA-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	bae43697-a5d2-4d7f-a5e4-83f011897f7e	1c8fb071-d66d-4f56-8886-a5720badd2ff	g.chr20:52561526G>T	uc002xws.2	-	12	2028	c.1690C>A	c.(1690-1692)CGG>AGG	p.R564R	BCAS1_uc010zza.1_Silent_p.R230R|BCAS1_uc010zzb.1_Silent_p.R490R|BCAS1_uc010gim.2_Silent_p.R420R|BCAS1_uc002xwt.2_Silent_p.R550R|BCAS1_uc010gil.1_Silent_p.R486R	NM_003657	NP_003648	O75363	BCAS1_HUMAN	breast carcinoma amplified sequence 1	564						cytoplasm	protein binding			ovary(2)|central_nervous_system(1)	3	Breast(2;9.53e-15)|Lung NSC(4;5.57e-06)|all_lung(4;1.44e-05)		STAD - Stomach adenocarcinoma(23;0.116)|Colorectal(105;0.198)			TCCAACATCCGCTTTGGTCCC	0.423000													6	228	---	---	---	---	3.59834e-05	3.9674e-05	0.021553	1	0
DNAH1	25981	broad.mit.edu	37	3	52391973	52391973	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A3OA-01A-11D-A21Z-08	TCGA-EM-A3OA-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	bae43697-a5d2-4d7f-a5e4-83f011897f7e	1c8fb071-d66d-4f56-8886-a5720badd2ff	g.chr3:52391973C>T	uc011bef.1	+	24	4301	c.4040C>T	c.(4039-4041)ACG>ATG	p.T1347M		NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	1347	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		AAGGACCCCACGGCCGTGCAG	0.622000													3	54	---	---	---	---	0	0	0.009096	0	0
PDZRN3	23024	broad.mit.edu	37	3	73453315	73453315	+	Missense_Mutation	SNP	A	G	G			TCGA-EM-A3OA-01A-11D-A21Z-08	TCGA-EM-A3OA-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	bae43697-a5d2-4d7f-a5e4-83f011897f7e	1c8fb071-d66d-4f56-8886-a5720badd2ff	g.chr3:73453315A>G	uc003dpl.1	-	4	1246	c.1150T>C	c.(1150-1152)TAT>CAT	p.Y384H	PDZRN3_uc011bgh.1_Missense_Mutation_p.Y41H|PDZRN3_uc010hoe.1_Missense_Mutation_p.Y82H|PDZRN3_uc011bgf.1_Missense_Mutation_p.Y101H|PDZRN3_uc011bgg.1_Missense_Mutation_p.Y104H	NM_015009	NP_055824	Q9UPQ7	PZRN3_HUMAN	PDZ domain containing ring finger 3	384							ubiquitin-protein ligase activity|zinc ion binding			pancreas(2)|ovary(2)|skin(2)|large_intestine(1)	7		Prostate(10;0.114)|Lung NSC(201;0.187)|Lung SC(41;0.236)		BRCA - Breast invasive adenocarcinoma(55;0.00041)|Epithelial(33;0.0023)|LUSC - Lung squamous cell carcinoma(21;0.0048)|Lung(16;0.0105)|KIRC - Kidney renal clear cell carcinoma(39;0.111)|Kidney(39;0.134)		GGCAAGAGATAGGGATCCAGC	0.458000													3	96	---	---	---	---	0	0	0.009096	0	0
ANK2	287	broad.mit.edu	37	4	114264269	114264269	+	Missense_Mutation	SNP	A	G	G			TCGA-EM-A3OA-01A-11D-A21Z-08	TCGA-EM-A3OA-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	bae43697-a5d2-4d7f-a5e4-83f011897f7e	1c8fb071-d66d-4f56-8886-a5720badd2ff	g.chr4:114264269A>G	uc003ibe.3	+	34	4319	c.4219A>G	c.(4219-4221)AAA>GAA	p.K1407E	ANK2_uc003ibd.3_Missense_Mutation_p.K1398E|ANK2_uc003ibf.3_Missense_Mutation_p.K1407E|ANK2_uc011cgc.1_Missense_Mutation_p.K583E|ANK2_uc003ibg.3_Missense_Mutation_p.K402E|ANK2_uc003ibh.3_Missense_Mutation_p.K81E|ANK2_uc011cgb.1_Missense_Mutation_p.K1422E	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	1374					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		TTTTGCCTTCAAAGAAAATAG	0.338000													30	46	---	---	---	---	0	0	0.037714	0	0
LOC100133050	100133050	broad.mit.edu	37	5	99715528	99715528	+	RNA	SNP	C	T	T			TCGA-EM-A3OA-01A-11D-A21Z-08	TCGA-EM-A3OA-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	bae43697-a5d2-4d7f-a5e4-83f011897f7e	1c8fb071-d66d-4f56-8886-a5720badd2ff	g.chr5:99715528C>T	uc011cuw.1	-	4		c.382G>A				NR_027503				Homo sapiens glucuronidase, beta pseudogene (LOC100133050), non-coding RNA.												0						AGCGGACAGTCGAAGCCCTTC	0.607000													6	14	---	---	---	---	0	0	0.021553	0	0
LRRTM2	26045	broad.mit.edu	37	5	138209408	138209408	+	Missense_Mutation	SNP	A	G	G			TCGA-EM-A3OA-01A-11D-A21Z-08	TCGA-EM-A3OA-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	bae43697-a5d2-4d7f-a5e4-83f011897f7e	1c8fb071-d66d-4f56-8886-a5720badd2ff	g.chr5:138209408A>G	uc011cyz.1	-	2	1299	c.842T>C	c.(841-843)ATA>ACA	p.I281T	CTNNA1_uc003ldh.2_Intron|CTNNA1_uc011cyx.1_Intron|CTNNA1_uc011cyy.1_Intron|CTNNA1_uc003ldi.2_Intron|CTNNA1_uc003ldj.2_Intron|LRRTM2_uc010jez.2_Intron|LRRTM2_uc011cza.1_Missense_Mutation_p.I147T|CTNNA1_uc003ldl.2_5'Flank	NM_015564	NP_056379	O43300	LRRT2_HUMAN	leucine rich repeat transmembrane neuronal 2	281	Extracellular (Potential).|LRR 10.					cell junction|integral to membrane|postsynaptic membrane					0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			CATGAGGAGTATTTTAAGATT	0.438000													8	271	---	---	---	---	0	0	0.038147	0	0
VNN2	8875	broad.mit.edu	37	6	133073823	133073823	+	Silent	SNP	G	A	A	rs141716354		TCGA-EM-A3OA-01A-11D-A21Z-08	TCGA-EM-A3OA-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	bae43697-a5d2-4d7f-a5e4-83f011897f7e	1c8fb071-d66d-4f56-8886-a5720badd2ff	g.chr6:133073823G>A	uc003qdt.2	-	4	614	c.603C>T	c.(601-603)ACC>ACT	p.T201T	VNN2_uc003qds.2_5'UTR|VNN2_uc010kgb.2_Intron|VNN2_uc003qdv.2_Silent_p.T148T	NM_004665	NP_004656	O95498	VNN2_HUMAN	vanin 2 isoform 1 precursor	201	CN hydrolase.				cellular component movement|pantothenate metabolic process	anchored to membrane|plasma membrane	pantetheine hydrolase activity				0				OV - Ovarian serous cystadenocarcinoma(155;0.00237)|GBM - Glioblastoma multiforme(226;0.0267)		TTCCAAATGCGGTGTTGAAAG	0.428000													27	209	---	---	---	---	0	0	0.030593	0	0
PLEKHG1	57480	broad.mit.edu	37	6	151161206	151161206	+	Missense_Mutation	SNP	C	T	T	rs139978019	by1000genomes	TCGA-EM-A3OA-01A-11D-A21Z-08	TCGA-EM-A3OA-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	bae43697-a5d2-4d7f-a5e4-83f011897f7e	1c8fb071-d66d-4f56-8886-a5720badd2ff	g.chr6:151161206C>T	uc003qny.1	+	17	3644	c.3332C>T	c.(3331-3333)ACG>ATG	p.T1111M	PLEKHG1_uc011eem.1_Missense_Mutation_p.T1170M	NM_001029884	NP_001025055	Q9ULL1	PKHG1_HUMAN	pleckstrin homology domain containing, family G	1111					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(37;0.0923)	OV - Ovarian serous cystadenocarcinoma(155;6.69e-13)		AGATATCCCACGTTTGAGATC	0.483000													35	47	---	---	---	---	0	0	0.069456	0	0
ADCYAP1R1	117	broad.mit.edu	37	7	31126076	31126076	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A3OA-01A-11D-A21Z-08	TCGA-EM-A3OA-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	bae43697-a5d2-4d7f-a5e4-83f011897f7e	1c8fb071-d66d-4f56-8886-a5720badd2ff	g.chr7:31126076T>C	uc003tca.1	+	10	971	c.748T>C	c.(748-750)TAC>CAC	p.Y250H	ADCYAP1R1_uc003tcb.1_Missense_Mutation_p.Y229H|ADCYAP1R1_uc003tcc.1_Missense_Mutation_p.Y250H|ADCYAP1R1_uc003tcd.1_Missense_Mutation_p.Y250H|ADCYAP1R1_uc003tce.1_Missense_Mutation_p.Y250H|ADCYAP1R1_uc003tcf.1_5'Flank	NM_001118	NP_001109	P41586	PACR_HUMAN	adenylate cyclase activating polypeptide 1	250	Helical; Name=3; (Potential).				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|spermatogenesis	integral to plasma membrane	vasoactive intestinal polypeptide receptor activity			ovary(1)	1						CGAGGGCCTGTACCTCTTCAC	0.532000													3	44	---	---	---	---	0	0	0.004672	0	0
HSPA5	3309	broad.mit.edu	37	9	128001313	128001313	+	Silent	SNP	A	G	G			TCGA-EM-A3OA-01A-11D-A21Z-08	TCGA-EM-A3OA-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	bae43697-a5d2-4d7f-a5e4-83f011897f7e	1c8fb071-d66d-4f56-8886-a5720badd2ff	g.chr9:128001313A>G	uc004bpn.2	-	5	1159	c.903T>C	c.(901-903)TCT>TCC	p.S301S		NM_005347	NP_005338	P11021	GRP78_HUMAN	heat shock 70kDa protein 5	301					anti-apoptosis|cellular response to glucose starvation|ER-associated protein catabolic process|platelet activation|platelet degranulation|regulation of protein folding in endoplasmic reticulum	cell surface|endoplasmic reticulum chaperone complex|endoplasmic reticulum lumen|ER-Golgi intermediate compartment|integral to endoplasmic reticulum membrane|melanosome|midbody|nucleus|perinuclear region of cytoplasm	ATP binding|ATPase activity|calcium ion binding|caspase inhibitor activity|chaperone binding|misfolded protein binding|protein binding, bridging|protein domain specific binding|ubiquitin protein ligase binding|unfolded protein binding			ovary(3)|skin(1)	4					Antihemophilic Factor(DB00025)	CTTGATGCTGAGAAGACAGGG	0.458000										Prostate(1;0.17)			34	28	---	---	---	---	0	0	0.086207	0	0
COL5A1	1289	broad.mit.edu	37	9	137630645	137630645	+	Silent	SNP	T	A	A			TCGA-EM-A3OA-01A-11D-A21Z-08	TCGA-EM-A3OA-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	bae43697-a5d2-4d7f-a5e4-83f011897f7e	1c8fb071-d66d-4f56-8886-a5720badd2ff	g.chr9:137630645T>A	uc004cfe.2	+	11	1867	c.1485T>A	c.(1483-1485)CCT>CCA	p.P495P		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	495	Interrupted collagenous region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		TCGGGGACCCTGGAGAAAGGG	0.577000													4	139	---	---	---	---	0	0	0.009096	0	0
Unknown	0	broad.mit.edu	37	MT	2695	2695	+	5'Flank	SNP	G	A	A			TCGA-EM-A3OA-01A-11D-A21Z-08	TCGA-EM-A3OA-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	bae43697-a5d2-4d7f-a5e4-83f011897f7e	1c8fb071-d66d-4f56-8886-a5720badd2ff	g.chrM:2695G>A	uc004coq.3	-						uc004cos.3_RNA					Homo sapiens cDNA: FLJ22857 fis, clone KAT01615.																		cctgcccgtgaagaggcgggc	0.095000													4	31	---	---	---	---	0	0	0.009096	0	0
Unknown	0	broad.mit.edu	37	1	13164130	13164131	+	IGR	INS	-	A	A			TCGA-EM-A3OA-01A-11D-A21Z-08	TCGA-EM-A3OA-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	bae43697-a5d2-4d7f-a5e4-83f011897f7e	1c8fb071-d66d-4f56-8886-a5720badd2ff	g.chr1:13164130_13164131insA								PRAMEF5 (46379 upstream) : LOC440563 (18830 downstream)																							TTTACTGTAACAAAAAAAAAAG	0.515													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	9391909	9391909	+	5'Flank	DEL	T	-	-			TCGA-EM-A3OA-01A-11D-A21Z-08	TCGA-EM-A3OA-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	bae43697-a5d2-4d7f-a5e4-83f011897f7e	1c8fb071-d66d-4f56-8886-a5720badd2ff	g.chr12:9391909delT	uc001qvm.1	+											Homo sapiens cDNA FLJ44260 fis, clone TLIVE2000979.																		tttttttttcttttttttttt	0.249													3	3	---	---	---	---					
GNPTAB	79158	broad.mit.edu	37	12	102158002	102158002	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EM-A3OA-01A-11D-A21Z-08	TCGA-EM-A3OA-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	bae43697-a5d2-4d7f-a5e4-83f011897f7e	1c8fb071-d66d-4f56-8886-a5720badd2ff	g.chr12:102158002delT	uc001tit.2	-	13	2872	c.2693delA	c.(2692-2694)AAGfs	p.K898fs		NM_024312	NP_077288	Q3T906	GNPTA_HUMAN	N-acetylglucosamine-1-phosphate transferase	898					cell differentiation	Golgi membrane|integral to membrane|nucleus	metal ion binding|transcription factor binding|UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase activity			ovary(1)|skin(1)	2						TTGGAAATACTTTTTTTTCTC	0.353													7	281	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	20556979	20556979	+	IGR	DEL	C	-	-	rs113696562		TCGA-EM-A3OA-01A-11D-A21Z-08	TCGA-EM-A3OA-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	bae43697-a5d2-4d7f-a5e4-83f011897f7e	1c8fb071-d66d-4f56-8886-a5720badd2ff	g.chr15:20556979delC								None (None upstream) : GOLGA6L6 (180115 downstream)																							ATGGGGGGGGCGGTCCTGTCC	0.667													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	102299886	102299887	+	5'Flank	INS	-	G	G			TCGA-EM-A3OA-01A-11D-A21Z-08	TCGA-EM-A3OA-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	bae43697-a5d2-4d7f-a5e4-83f011897f7e	1c8fb071-d66d-4f56-8886-a5720badd2ff	g.chr15:102299886_102299887insG	uc002bzh.1	-						uc002bzk.2_5'Flank|uc002bzn.2_5'Flank|uc010uso.1_5'Flank|uc002bzs.2_5'Flank|uc010usv.1_5'Flank|uc002cal.2_5'Flank|uc002cam.2_5'Flank|uc010usx.1_5'Flank|uc002cao.2_5'Flank|uc002cap.2_5'Flank|uc002caq.2_5'Flank|uc010usz.1_5'Flank|uc010uta.1_5'Flank|uc002cas.2_5'Flank|uc002cat.1_5'Flank|uc002cau.2_5'Flank|uc010utb.1_5'Flank|uc002cav.2_5'Flank|uc002caw.2_5'Flank|uc002cax.2_5'Flank|uc010utc.1_5'Flank|uc002cay.2_5'Flank|uc002cbb.2_5'Flank|uc002cbc.1_5'Flank|uc002cbd.2_5'Flank|uc002cbe.2_5'Flank|uc002cbg.2_5'Flank|uc002cbh.2_5'Flank|uc002cbi.2_5'Flank|uc002cbk.2_5'Flank|uc002cbl.2_5'Flank|uc010utd.1_5'Flank					DQ575740																		AACCTGTACTCGCGTCGGAACC	0.589													3	4	---	---	---	---					
MPV17L	255027	broad.mit.edu	37	16	15490060	15490060	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EM-A3OA-01A-11D-A21Z-08	TCGA-EM-A3OA-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	bae43697-a5d2-4d7f-a5e4-83f011897f7e	1c8fb071-d66d-4f56-8886-a5720badd2ff	g.chr16:15490060delT	uc002ddn.2	+	1	450	c.306delT	c.(304-306)TATfs	p.Y102fs	MPV17L_uc002ddm.2_Frame_Shift_Del_p.Y102fs	NM_001128423	NP_001121895	Q2QL34	MP17L_HUMAN	MPV17 mitochondrial membrane protein-like	102	Helical; (Potential).					integral to membrane|peroxisomal membrane					0						CGGCCTTCTATGTCGGTGAGG	0.721													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	32176904	32176904	+	IGR	DEL	G	-	-			TCGA-EM-A3OA-01A-11D-A21Z-08	TCGA-EM-A3OA-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	bae43697-a5d2-4d7f-a5e4-83f011897f7e	1c8fb071-d66d-4f56-8886-a5720badd2ff	g.chr16:32176904delG								HERC2P4 (13030 upstream) : TP53TG3B (507937 downstream)																							AAAAAAAAAAGAAATCAAAGC	0.284													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	18	33422637	33422637	+	IGR	DEL	A	-	-			TCGA-EM-A3OA-01A-11D-A21Z-08	TCGA-EM-A3OA-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	bae43697-a5d2-4d7f-a5e4-83f011897f7e	1c8fb071-d66d-4f56-8886-a5720badd2ff	g.chr18:33422637delA								GALNT1 (130840 upstream) : MIR187 (62144 downstream)																							GTTAATGCAGAAAAAAAAATG	0.393													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	40740449	40740450	+	IGR	INS	-	A	A			TCGA-EM-A3OA-01A-11D-A21Z-08	TCGA-EM-A3OA-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	bae43697-a5d2-4d7f-a5e4-83f011897f7e	1c8fb071-d66d-4f56-8886-a5720badd2ff	g.chr3:40740449_40740450insA								ZNF621 (159406 upstream) : CTNNB1 (495951 downstream)																							AGCATAGCTTTAAAAAAAAAAG	0.317													3	6	---	---	---	---					
TBC1D9	23158	broad.mit.edu	37	4	141677078	141677080	+	In_Frame_Del	DEL	CCG	-	-			TCGA-EM-A3OA-01A-11D-A21Z-08	TCGA-EM-A3OA-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	bae43697-a5d2-4d7f-a5e4-83f011897f7e	1c8fb071-d66d-4f56-8886-a5720badd2ff	g.chr4:141677078_141677080delCCG	uc010ioj.2	-	1	392_394	c.120_122delCGG	c.(118-123)GGCGGA>GGA	p.40_41GG>G		NM_015130	NP_055945	Q6ZT07	TBCD9_HUMAN	TBC1 domain family, member 9 (with GRAM domain)	40_41						intracellular	calcium ion binding|Rab GTPase activator activity			ovary(1)	1	all_hematologic(180;0.162)	Medulloblastoma(177;0.00498)				ACCCGCCAGTCCGCCGCCGCCGC	0.739													2	4	---	---	---	---					
PCDHB10	56126	broad.mit.edu	37	5	140574170	140574175	+	In_Frame_Del	DEL	AGGCCG	-	-	rs140613424	byFrequency	TCGA-EM-A3OA-01A-11D-A21Z-08	TCGA-EM-A3OA-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	bae43697-a5d2-4d7f-a5e4-83f011897f7e	1c8fb071-d66d-4f56-8886-a5720badd2ff	g.chr5:140574170_140574175delAGGCCG	uc003lix.2	+	1	2219_2224	c.2045_2050delAGGCCG	c.(2044-2052)CAGGCCGAG>CAG	p.AE683del		NM_018930	NP_061753	Q9UN67	PCDBA_HUMAN	protocadherin beta 10 precursor	683_684	Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCCCAGGCCCAGGCCGAGGCCGACTT	0.704													10	110	---	---	---	---					
C6orf153	88745	broad.mit.edu	37	6	42989434	42989451	+	In_Frame_Del	DEL	CGGGGCCCGACGTCCCCG	-	-	rs60664426		TCGA-EM-A3OA-01A-11D-A21Z-08	TCGA-EM-A3OA-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	bae43697-a5d2-4d7f-a5e4-83f011897f7e	1c8fb071-d66d-4f56-8886-a5720badd2ff	g.chr6:42989434_42989451delCGGGGCCCGACGTCCCCG	uc003otp.1	+	1	50_67	c.42_59delCGGGGCCCGACGTCCCCG	c.(40-60)GCCGGGGCCCGACGTCCCCGC>GCC	p.GARRPR15del		NM_033112	NP_149103	Q96EU6	RRP36_HUMAN	hypothetical protein LOC88745	15_20					ribosomal small subunit biogenesis|rRNA processing	nucleolus					0			Colorectal(64;0.00237)|all cancers(41;0.0034)|COAD - Colon adenocarcinoma(64;0.00473)|OV - Ovarian serous cystadenocarcinoma(102;0.0539)|KIRC - Kidney renal clear cell carcinoma(15;0.133)|Kidney(15;0.188)			gggccggggccggggcccgacgtccccgcggggcccgg	0.550													3	4	---	---	---	---					
ARID1B	57492	broad.mit.edu	37	6	157099427	157099429	+	In_Frame_Del	DEL	CAG	-	-			TCGA-EM-A3OA-01A-11D-A21Z-08	TCGA-EM-A3OA-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	bae43697-a5d2-4d7f-a5e4-83f011897f7e	1c8fb071-d66d-4f56-8886-a5720badd2ff	g.chr6:157099427_157099429delCAG	uc003qqn.2	+	1	342_344	c.190_192delCAG	c.(190-192)CAGdel	p.Q73del	ARID1B_uc003qqo.2_In_Frame_Del_p.Q73del|ARID1B_uc003qqp.2_In_Frame_Del_p.Q73del	NM_017519	NP_059989	Q8NFD5	ARI1B_HUMAN	AT rich interactive domain 1B (SWI1-like)	131	Gln-rich.				chromatin-mediated maintenance of transcription|nervous system development|transcription, DNA-dependent	SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			ovary(1)|breast(1)	2		Breast(66;0.000162)|Ovarian(120;0.0265)		OV - Ovarian serous cystadenocarcinoma(65;3.19e-17)|BRCA - Breast invasive adenocarcinoma(81;1.01e-05)		gcagcagcaacagcagcagcagc	0.202													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	138883938	138883938	+	IGR	DEL	T	-	-			TCGA-EM-A3OA-01A-11D-A21Z-08	TCGA-EM-A3OA-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	bae43697-a5d2-4d7f-a5e4-83f011897f7e	1c8fb071-d66d-4f56-8886-a5720badd2ff	g.chr7:138883938delT								TTC26 (9388 upstream) : UBN2 (32293 downstream)																							CATCTTAGCCtttttttttgt	0.224													2	4	---	---	---	---					
