Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
TCF7L2	6934	broad.mit.edu	37	10	114911638	114911638	+	Silent	SNP	C	A	A			TCGA-ET-A3DP-01A-11D-A21A-08	TCGA-ET-A3DP-11A-22D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d8a9ef-371b-4aff-a116-6e38a084f140	43940b7d-7b62-4832-9622-16fd0730a98e	g.chr10:114911638C>A	uc001lae.3	+	10	1663	c.1156C>A	c.(1156-1158)CGG>AGG	p.R386R	TCF7L2_uc001lac.3_Silent_p.R363R|TCF7L2_uc010qrk.1_Silent_p.R363R|TCF7L2_uc010qrl.1_Silent_p.R363R|TCF7L2_uc010qrm.1_Silent_p.R386R|TCF7L2_uc010qrn.1_Silent_p.R329R|TCF7L2_uc001lad.3_Silent_p.R359R|TCF7L2_uc001lag.3_Silent_p.R410R|TCF7L2_uc001laf.3_Silent_p.R363R|TCF7L2_uc010qro.1_Silent_p.R363R|TCF7L2_uc001lah.2_Silent_p.R368R|TCF7L2_uc010qrp.1_Silent_p.R363R|TCF7L2_uc010qrq.1_Silent_p.R359R|TCF7L2_uc010qrr.1_Silent_p.R301R|TCF7L2_uc010qrs.1_Silent_p.R257R|TCF7L2_uc010qrt.1_Silent_p.R257R|TCF7L2_uc010qru.1_Silent_p.R285R|TCF7L2_uc010qrv.1_Silent_p.R203R|TCF7L2_uc010qrw.1_Silent_p.R90R|TCF7L2_uc010qrx.1_Silent_p.R243R	NM_001146274	NP_001139746	Q9NQB0	TF7L2_HUMAN	transcription factor 7-like 2 isoform 1	386	Mediates interaction with MAD2L2.|HMG box.				anti-apoptosis|blood vessel development|canonical Wnt receptor signaling pathway involved in positive regulation of epithelial to mesenchymal transition|cell cycle arrest|cell proliferation|fat cell differentiation|glucose homeostasis|maintenance of DNA repeat elements|myoblast cell fate commitment|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|pancreas development|positive regulation of heparan sulfate proteoglycan biosynthetic process|positive regulation of insulin secretion|positive regulation of protein binding|positive regulation of protein export from nucleus|positive regulation of protein kinase B signaling cascade|positive regulation of transcription from RNA polymerase II promoter|regulation of hormone metabolic process|regulation of smooth muscle cell proliferation|response to glucose stimulus	beta-catenin-TCF7L2 complex|PML body|protein-DNA complex	armadillo repeat domain binding|beta-catenin binding|gamma-catenin binding|nuclear hormone receptor binding|protein kinase binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding			large_intestine(3)|ovary(1)	4		Breast(234;0.058)|Colorectal(252;0.0615)		Epithelial(162;0.00554)|all cancers(201;0.02)		GATCCTTGGGCGGAGGGTAGG	0.547000													3	58	---	---	---	---	1.23904e-05	2.40064e-05	0.000602	1	0
TSSK4	283629	broad.mit.edu	37	14	24676436	24676436	+	Silent	SNP	T	C	C			TCGA-ET-A3DP-01A-11D-A21A-08	TCGA-ET-A3DP-11A-22D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d8a9ef-371b-4aff-a116-6e38a084f140	43940b7d-7b62-4832-9622-16fd0730a98e	g.chr14:24676436T>C	uc001wng.2	+	3	693	c.525T>C	c.(523-525)TCT>TCC	p.S175S	TM9SF1_uc010tob.1_Intron|TSSK4_uc001wne.2_Silent_p.S99S|TSSK4_uc001wnf.2_Silent_p.S105S|TSSK4_uc001wnh.2_Silent_p.S185S	NM_174944	NP_777604	Q6SA08	TSSK4_HUMAN	testis-specific serine kinase 4	175	Protein kinase.				cell differentiation|multicellular organismal development|positive regulation of CREB transcription factor activity|spermatogenesis		ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity				0				GBM - Glioblastoma multiforme(265;0.018)		TGGTGCCTTCTAACCAGCCTG	0.502000													8	134	---	---	---	---	0	0	0.008291	0	0
DNAH2	146754	broad.mit.edu	37	17	7722542	7722542	+	Missense_Mutation	SNP	G	A	A			TCGA-ET-A3DP-01A-11D-A21A-08	TCGA-ET-A3DP-11A-22D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d8a9ef-371b-4aff-a116-6e38a084f140	43940b7d-7b62-4832-9622-16fd0730a98e	g.chr17:7722542G>A	uc002giu.1	+	71	10845	c.10831G>A	c.(10831-10833)GCC>ACC	p.A3611T	DNAH2_uc010cnm.1_Missense_Mutation_p.A549T	NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	3611					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				CCGCCCATGCGCCCAGCGGGC	0.607000													5	102	---	---	---	---	0	0	0.001984	0	0
FBXL20	84961	broad.mit.edu	37	17	37431233	37431233	+	Missense_Mutation	SNP	G	A	A			TCGA-ET-A3DP-01A-11D-A21A-08	TCGA-ET-A3DP-11A-22D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d8a9ef-371b-4aff-a116-6e38a084f140	43940b7d-7b62-4832-9622-16fd0730a98e	g.chr17:37431233G>A	uc010wed.1	-	10	1038	c.817C>T	c.(817-819)CCA>TCA	p.P273S	FBXL20_uc002hrt.2_Missense_Mutation_p.P273S|FBXL20_uc010cvu.2_Missense_Mutation_p.P241S	NM_032875	NP_116264	Q96IG2	FXL20_HUMAN	F-box and leucine-rich repeat protein 20	273	LRR 8.					cytoplasm				ovary(1)	1			LUAD - Lung adenocarcinoma(14;0.146)			CTAAGCCGTGGGCAGTTCTGA	0.408000													20	49	---	---	---	---	0	0	0.003954	0	0
ZNF799	90576	broad.mit.edu	37	19	12501446	12501446	+	Missense_Mutation	SNP	T	C	C			TCGA-ET-A3DP-01A-11D-A21A-08	TCGA-ET-A3DP-11A-22D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d8a9ef-371b-4aff-a116-6e38a084f140	43940b7d-7b62-4832-9622-16fd0730a98e	g.chr19:12501446T>C	uc010dyt.2	-	4	1916	c.1766A>G	c.(1765-1767)GAA>GGA	p.E589G	ZNF799_uc002mts.3_Intron	NM_001080821	NP_001074290	Q96GE5	ZN799_HUMAN	zinc finger protein 799	589	C2H2-type 17.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|ovary(2)|skin(1)	6						TTCCTTACATTCATACGGGTT	0.413000													3	13	---	---	---	---	0	0	0.004672	0	0
ZIK1	284307	broad.mit.edu	37	19	58102412	58102412	+	Missense_Mutation	SNP	C	A	A			TCGA-ET-A3DP-01A-11D-A21A-08	TCGA-ET-A3DP-11A-22D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d8a9ef-371b-4aff-a116-6e38a084f140	43940b7d-7b62-4832-9622-16fd0730a98e	g.chr19:58102412C>A	uc002qpg.2	+	4	1330	c.1233C>A	c.(1231-1233)GAC>GAA	p.D411E	ZNF547_uc002qpm.3_Intron|ZIK1_uc002qph.2_Missense_Mutation_p.D356E|ZIK1_uc002qpi.2_Missense_Mutation_p.D398E|ZIK1_uc002qpj.2_Missense_Mutation_p.D308E	NM_001010879	NP_001010879	Q3SY52	ZIK1_HUMAN	zinc finger protein interacting with K protein	411	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		AGTGTGGTGACTGTGGGAAAT	0.448000													4	18	---	---	---	---	0.000602214	0.00109816	0.000602	1	0
ZIK1	284307	broad.mit.edu	37	19	58102421	58102421	+	Missense_Mutation	SNP	A	T	T			TCGA-ET-A3DP-01A-11D-A21A-08	TCGA-ET-A3DP-11A-22D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d8a9ef-371b-4aff-a116-6e38a084f140	43940b7d-7b62-4832-9622-16fd0730a98e	g.chr19:58102421A>T	uc002qpg.2	+	4	1339	c.1242A>T	c.(1240-1242)AAA>AAT	p.K414N	ZNF547_uc002qpm.3_Intron|ZIK1_uc002qph.2_Missense_Mutation_p.K359N|ZIK1_uc002qpi.2_Missense_Mutation_p.K401N|ZIK1_uc002qpj.2_Missense_Mutation_p.K311N	NM_001010879	NP_001010879	Q3SY52	ZIK1_HUMAN	zinc finger protein interacting with K protein	414	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		ACTGTGGGAAATCCTTTAGTC	0.453000													4	18	---	---	---	---	0	0	0.000248	0	0
ZMYND8	23613	broad.mit.edu	37	20	45891129	45891129	+	Silent	SNP	G	A	A			TCGA-ET-A3DP-01A-11D-A21A-08	TCGA-ET-A3DP-11A-22D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d8a9ef-371b-4aff-a116-6e38a084f140	43940b7d-7b62-4832-9622-16fd0730a98e	g.chr20:45891129G>A	uc002xta.1	-	12	1718	c.1464C>T	c.(1462-1464)TCC>TCT	p.S488S	ZMYND8_uc010ghq.1_Silent_p.S165S|ZMYND8_uc010ghr.1_Silent_p.S463S|ZMYND8_uc002xst.1_Intron|ZMYND8_uc002xsu.1_Silent_p.S488S|ZMYND8_uc002xsv.1_Intron|ZMYND8_uc002xsw.1_Silent_p.S240S|ZMYND8_uc002xsx.1_Silent_p.S240S|ZMYND8_uc002xsy.1_Silent_p.S463S|ZMYND8_uc002xsz.1_Silent_p.S425S|ZMYND8_uc010zxy.1_Silent_p.S515S|ZMYND8_uc002xtb.1_Silent_p.S508S|ZMYND8_uc002xss.2_Silent_p.S488S|ZMYND8_uc010zxz.1_Silent_p.S483S|ZMYND8_uc002xtc.1_Silent_p.S508S|ZMYND8_uc002xtd.1_Silent_p.S483S|ZMYND8_uc002xte.1_Silent_p.S488S|ZMYND8_uc010zya.1_Silent_p.S488S|ZMYND8_uc002xtf.1_Silent_p.S508S|ZMYND8_uc002xtg.2_Silent_p.S482S|ZMYND8_uc010ghs.1_Silent_p.S482S	NM_012408	NP_036540	Q9ULU4	PKCB1_HUMAN	zinc finger, MYND-type containing 8 isoform b	488							protein binding|zinc ion binding			central_nervous_system(2)|urinary_tract(1)|ovary(1)|skin(1)	5			Epithelial(1;0.0289)|all cancers(1;0.0962)|OV - Ovarian serous cystadenocarcinoma(1;0.154)			TTGGGCTGCCGGATAAACTCC	0.488000													4	51	---	---	---	---	0	0	0.000248	0	0
LIMD1	8994	broad.mit.edu	37	3	45636405	45636405	+	Missense_Mutation	SNP	A	T	T			TCGA-ET-A3DP-01A-11D-A21A-08	TCGA-ET-A3DP-11A-22D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d8a9ef-371b-4aff-a116-6e38a084f140	43940b7d-7b62-4832-9622-16fd0730a98e	g.chr3:45636405A>T	uc003coq.2	+	1	83	c.34A>T	c.(34-36)AGT>TGT	p.S12C		NM_014240	NP_055055	Q9UGP4	LIMD1_HUMAN	LIM domains containing 1	12					cytoplasmic mRNA processing body assembly|gene silencing by miRNA|multicellular organismal development|negative regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	cytoplasmic mRNA processing body|nucleus|RNA-induced silencing complex	protein binding|zinc ion binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.011)|KIRC - Kidney renal clear cell carcinoma(197;0.0264)|Kidney(197;0.0315)		CCTGGAGGCCAGTAAATTCAT	0.478000													11	30	---	---	---	---	0	0	0.002450	0	0
TRAIP	10293	broad.mit.edu	37	3	49866894	49866894	+	Silent	SNP	C	T	T	rs146306196	byFrequency	TCGA-ET-A3DP-01A-11D-A21A-08	TCGA-ET-A3DP-11A-22D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d8a9ef-371b-4aff-a116-6e38a084f140	43940b7d-7b62-4832-9622-16fd0730a98e	g.chr3:49866894C>T	uc003cxs.1	-	14	1390	c.1284G>A	c.(1282-1284)CAG>CAA	p.Q428Q	TRAIP_uc010hla.1_Silent_p.Q329Q	NM_005879	NP_005870	Q9BWF2	TRAIP_HUMAN	TRAF interacting protein	428	Interaction with CYLD.				cell proliferation|induction of apoptosis	perinuclear region of cytoplasm	protein binding|zinc ion binding			lung(4)|upper_aerodigestive_tract(1)|ovary(1)	6				BRCA - Breast invasive adenocarcinoma(193;4.71e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		AGGATACAGGCTGGATGAATT	0.577000													22	35	---	---	---	---	0	0	0.004656	0	0
COL11A2	1302	broad.mit.edu	37	6	33139342	33139342	+	Missense_Mutation	SNP	C	T	T			TCGA-ET-A3DP-01A-11D-A21A-08	TCGA-ET-A3DP-11A-22D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d8a9ef-371b-4aff-a116-6e38a084f140	43940b7d-7b62-4832-9622-16fd0730a98e	g.chr6:33139342C>T	uc003ocx.1	-	43	3388	c.3160G>A	c.(3160-3162)GGC>AGC	p.G1054S	COL11A2_uc010jul.1_Intron|COL11A2_uc003ocy.1_Missense_Mutation_p.G968S|COL11A2_uc003ocz.1_Missense_Mutation_p.G947S	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	1054	Triple-helical region.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						CCAATGGGGCCCTTCTCACCC	0.617000													6	14	---	---	---	---	0	0	0.004482	0	0
TULP4	56995	broad.mit.edu	37	6	158923511	158923511	+	Missense_Mutation	SNP	G	A	A			TCGA-ET-A3DP-01A-11D-A21A-08	TCGA-ET-A3DP-11A-22D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d8a9ef-371b-4aff-a116-6e38a084f140	43940b7d-7b62-4832-9622-16fd0730a98e	g.chr6:158923511G>A	uc003qrf.2	+	13	4173	c.2816G>A	c.(2815-2817)AGC>AAC	p.S939N	TULP4_uc003qrg.2_Intron	NM_020245	NP_064630	Q9NRJ4	TULP4_HUMAN	tubby like protein 4 isoform 1	939					intracellular signal transduction|response to nutrient	cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Breast(66;0.000781)|Ovarian(120;0.0308)|Lung SC(201;0.164)|Prostate(117;0.171)		OV - Ovarian serous cystadenocarcinoma(65;1.64e-18)|BRCA - Breast invasive adenocarcinoma(81;2.67e-05)		CAGCCCTGCAGCAGTGCCACC	0.672000													4	128	---	---	---	---	0	0	0.000248	0	0
PCLO	27445	broad.mit.edu	37	7	82584499	82584499	+	Missense_Mutation	SNP	T	C	C			TCGA-ET-A3DP-01A-11D-A21A-08	TCGA-ET-A3DP-11A-22D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d8a9ef-371b-4aff-a116-6e38a084f140	43940b7d-7b62-4832-9622-16fd0730a98e	g.chr7:82584499T>C	uc003uhx.2	-	5	6059	c.5770A>G	c.(5770-5772)AAA>GAA	p.K1924E	PCLO_uc003uhv.2_Missense_Mutation_p.K1924E	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1855					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TTGTGTGTTTTATGCATCATT	0.358000													4	4	---	---	---	---	0	0	0.000602	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-ET-A3DP-01A-11D-A21A-08	TCGA-ET-A3DP-11A-22D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d8a9ef-371b-4aff-a116-6e38a084f140	43940b7d-7b62-4832-9622-16fd0730a98e	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				16	20	---	---	---	---	0	0	0.008871	0	0
RPL36A	6173	broad.mit.edu	37	X	100650727	100650727	+	Silent	SNP	C	A	A			TCGA-ET-A3DP-01A-11D-A21A-08	TCGA-ET-A3DP-11A-22D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d8a9ef-371b-4aff-a116-6e38a084f140	43940b7d-7b62-4832-9622-16fd0730a98e	g.chrX:100650727C>A	uc004ehk.2	+	5	396	c.312C>A	c.(310-312)ATC>ATA	p.I104I		NM_021029	NP_066357	P83881	RL36A_HUMAN	ribosomal protein L36a	104					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosol|ribosome	protein binding|structural constituent of ribosome				0						GCCAAGTGATCCAGTTCTAAG	0.343000													8	22	---	---	---	---	0.00185496	0.00319465	0.001855	1	0
Unknown	0	broad.mit.edu	37	1	4059903	4059908	+	IGR	DEL	AGAGAG	-	-	rs142776471	by1000genomes	TCGA-ET-A3DP-01A-11D-A21A-08	TCGA-ET-A3DP-11A-22D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d8a9ef-371b-4aff-a116-6e38a084f140	43940b7d-7b62-4832-9622-16fd0730a98e	g.chr1:4059903_4059908delAGAGAG								LOC100133612 (226026 upstream) : LOC284661 (412203 downstream)																							GACGTGTCACAGAGAGAGGAAGGGGC	0.660													2	4	---	---	---	---					
EFCAB4A	283229	broad.mit.edu	37	11	831640	831642	+	In_Frame_Del	DEL	CTG	-	-			TCGA-ET-A3DP-01A-11D-A21A-08	TCGA-ET-A3DP-11A-22D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d8a9ef-371b-4aff-a116-6e38a084f140	43940b7d-7b62-4832-9622-16fd0730a98e	g.chr11:831640_831642delCTG	uc001lrv.2	+	9	1509_1511	c.1131_1133delCTG	c.(1129-1134)ACCTGC>ACC	p.C383del	EFCAB4A_uc009ycm.1_3'UTR|EFCAB4A_uc001lrw.2_In_Frame_Del_p.C448del|CD151_uc001lrx.2_5'Flank|CD151_uc001lry.2_5'Flank|CD151_uc001lrz.2_5'Flank|CD151_uc001lsa.2_5'Flank|CD151_uc001lsb.2_5'Flank			Q8N4Y2	EFC4A_HUMAN	RecName: Full=EF-hand calcium-binding domain-containing protein 4A;	383	Cys-rich.				store-operated calcium entry		calcium ion binding				0		all_cancers(49;2.31e-08)|all_epithelial(84;3.72e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.179)|all_lung(207;0.227)		all cancers(45;1.45e-25)|Epithelial(43;1.17e-24)|OV - Ovarian serous cystadenocarcinoma(40;6.76e-19)|BRCA - Breast invasive adenocarcinoma(625;4.23e-05)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		CTGGGCCCACCTGCTGCTGCTGC	0.695													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	92292701	92292703	+	IGR	DEL	GGT	-	-			TCGA-ET-A3DP-01A-11D-A21A-08	TCGA-ET-A3DP-11A-22D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d8a9ef-371b-4aff-a116-6e38a084f140	43940b7d-7b62-4832-9622-16fd0730a98e	g.chr15:92292701_92292703delGGT								SV2B (454053 upstream) : SLCO3A1 (104235 downstream)																							tggaggtggaggtggtggtggtg	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	66453215	66453216	+	IGR	INS	-	G	G			TCGA-ET-A3DP-01A-11D-A21A-08	TCGA-ET-A3DP-11A-22D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d8a9ef-371b-4aff-a116-6e38a084f140	43940b7d-7b62-4832-9622-16fd0730a98e	g.chr16:66453215_66453216insG								CDH5 (14527 upstream) : BEAN (8024 downstream)																							aggggagggaaggggagggggg	0.005													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	7967381	7967381	+	IGR	DEL	A	-	-			TCGA-ET-A3DP-01A-11D-A21A-08	TCGA-ET-A3DP-11A-22D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d8a9ef-371b-4aff-a116-6e38a084f140	43940b7d-7b62-4832-9622-16fd0730a98e	g.chr17:7967381delA								ALOX15B (14939 upstream) : ALOX12B (8573 downstream)																							cgcctcccccacctcacccct	0.303													4	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	10899030	10899059	+	IGR	DEL	CTGCTGCTGCTGCTGCTGCTGCTGCTGCTG	-	-	rs149407503		TCGA-ET-A3DP-01A-11D-A21A-08	TCGA-ET-A3DP-11A-22D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d8a9ef-371b-4aff-a116-6e38a084f140	43940b7d-7b62-4832-9622-16fd0730a98e	g.chr17:10899030_10899059delCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG								PIRT (157612 upstream) : SHISA6 (245681 downstream)																							CTGCAGCTACctgctgctgctgctgctgctgctgctgctgctgctgctgc	0.330													2	4	---	---	---	---					
ABCA5	23461	broad.mit.edu	37	17	67257831	67257831	+	Frame_Shift_Del	DEL	A	-	-			TCGA-ET-A3DP-01A-11D-A21A-08	TCGA-ET-A3DP-11A-22D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d8a9ef-371b-4aff-a116-6e38a084f140	43940b7d-7b62-4832-9622-16fd0730a98e	g.chr17:67257831delA	uc002jif.2	-	24	4592	c.3374delT	c.(3373-3375)TTCfs	p.F1125fs	ABCA5_uc002jib.2_Frame_Shift_Del_p.F91fs|ABCA5_uc002jic.2_Frame_Shift_Del_p.F348fs|ABCA5_uc002jid.2_Frame_Shift_Del_p.F42fs|ABCA5_uc002jie.2_RNA|ABCA5_uc002jig.2_Frame_Shift_Del_p.F1125fs	NM_018672	NP_061142	Q8WWZ7	ABCA5_HUMAN	ATP-binding cassette, sub-family A , member 5	1125					cholesterol efflux|high-density lipoprotein particle remodeling|negative regulation of macrophage derived foam cell differentiation	Golgi membrane|integral to membrane|late endosome membrane|lysosomal membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;3.72e-11)					CTTAAAGGTGAAAGAAGCAAT	0.264													2	4	---	---	---	---					
BAHCC1	57597	broad.mit.edu	37	17	79409285	79409285	+	Frame_Shift_Del	DEL	G	-	-			TCGA-ET-A3DP-01A-11D-A21A-08	TCGA-ET-A3DP-11A-22D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d8a9ef-371b-4aff-a116-6e38a084f140	43940b7d-7b62-4832-9622-16fd0730a98e	g.chr17:79409285delG	uc002kaf.2	+	3	910	c.910delG	c.(910-912)GGGfs	p.G304fs	BAHCC1_uc002kae.2_5'Flank	NM_001080519	NP_001073988	Q9P281	BAHC1_HUMAN	BAH domain and coiled-coil containing 1	304							DNA binding			ovary(1)	1	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0224)|OV - Ovarian serous cystadenocarcinoma(97;0.116)			CAGCTGTGCAGGGGGCATGCT	0.726													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	18	71861016	71861016	+	IGR	DEL	C	-	-			TCGA-ET-A3DP-01A-11D-A21A-08	TCGA-ET-A3DP-11A-22D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d8a9ef-371b-4aff-a116-6e38a084f140	43940b7d-7b62-4832-9622-16fd0730a98e	g.chr18:71861016delC								C18orf55 (34812 upstream) : CYB5A (59512 downstream)																							cctccaccatccccccctcca	0.303													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	55209855	55209855	+	IGR	DEL	G	-	-	rs11332118		TCGA-ET-A3DP-01A-11D-A21A-08	TCGA-ET-A3DP-11A-22D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d8a9ef-371b-4aff-a116-6e38a084f140	43940b7d-7b62-4832-9622-16fd0730a98e	g.chr19:55209855delG								LILRB4 (30011 upstream) : LILRP2 (9746 downstream)																							GACAGGGGATGGGGGGGAGGG	0.657													4	2	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	117705971	117705973	+	IGR	DEL	AGG	-	-			TCGA-ET-A3DP-01A-11D-A21A-08	TCGA-ET-A3DP-11A-22D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d8a9ef-371b-4aff-a116-6e38a084f140	43940b7d-7b62-4832-9622-16fd0730a98e	g.chr2:117705971_117705973delAGG								None (None upstream) : DDX18 (866282 downstream)																							gaggggaacaaggaggaggagga	0.143													2	4	---	---	---	---					
PTPN18	26469	broad.mit.edu	37	2	131129929	131129934	+	In_Frame_Del	DEL	GACGGG	-	-	rs112040677		TCGA-ET-A3DP-01A-11D-A21A-08	TCGA-ET-A3DP-11A-22D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d8a9ef-371b-4aff-a116-6e38a084f140	43940b7d-7b62-4832-9622-16fd0730a98e	g.chr2:131129929_131129934delGACGGG	uc002trc.2	+	13	1214_1219	c.1113_1118delGACGGG	c.(1111-1119)CAGACGGGG>CAG	p.TG378del	PTPN18_uc002trd.2_In_Frame_Del_p.TG357del|PTPN18_uc002trb.2_In_Frame_Del_p.TG271del|PTPN18_uc002tre.2_In_Frame_Del_p.TG29del	NM_014369	NP_055184	Q99952	PTN18_HUMAN	protein tyrosine phosphatase, non-receptor type	378_379				Missing (in Ref. 1; CAA56105).		cytoplasm|nucleus	non-membrane spanning protein tyrosine phosphatase activity			ovary(3)|kidney(1)	4	Colorectal(110;0.1)					gtgggacgcagacggggacggggacg	0.568													5	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	60540959	60540959	+	IGR	DEL	C	-	-			TCGA-ET-A3DP-01A-11D-A21A-08	TCGA-ET-A3DP-11A-22D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d8a9ef-371b-4aff-a116-6e38a084f140	43940b7d-7b62-4832-9622-16fd0730a98e	g.chr20:60540959delC								MIR1257 (12241 upstream) : TAF4 (8896 downstream)																							cccggccccgcccccagccct	0.149													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	560530	560531	+	IGR	INS	-	C	C			TCGA-ET-A3DP-01A-11D-A21A-08	TCGA-ET-A3DP-11A-22D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d8a9ef-371b-4aff-a116-6e38a084f140	43940b7d-7b62-4832-9622-16fd0730a98e	g.chr4:560530_560531insC								PIGG (27211 upstream) : PDE6B (58832 downstream)																							ccttcatcccacccctgcatcc	0.074													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	3575452	3575453	+	IGR	INS	-	AG	AG	rs113693643	by1000genomes	TCGA-ET-A3DP-01A-11D-A21A-08	TCGA-ET-A3DP-11A-22D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d8a9ef-371b-4aff-a116-6e38a084f140	43940b7d-7b62-4832-9622-16fd0730a98e	g.chr4:3575452_3575453insAG								LRPAP1 (41228 upstream) : ADRA2C (192622 downstream)																							gggtgtggcacgtgggagaggg	0.203													3	5	---	---	---	---					
KIAA1211	57482	broad.mit.edu	37	4	57180750	57180752	+	In_Frame_Del	DEL	AGG	-	-			TCGA-ET-A3DP-01A-11D-A21A-08	TCGA-ET-A3DP-11A-22D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d8a9ef-371b-4aff-a116-6e38a084f140	43940b7d-7b62-4832-9622-16fd0730a98e	g.chr4:57180750_57180752delAGG	uc003hbk.2	+	8	1473_1475	c.1082_1084delAGG	c.(1081-1086)CAGGAG>CAG	p.E365del	KIAA1211_uc010iha.2_In_Frame_Del_p.E358del|KIAA1211_uc011bzz.1_In_Frame_Del_p.E275del|KIAA1211_uc003hbm.1_In_Frame_Del_p.E251del	NM_020722	NP_065773	Q6ZU35	K1211_HUMAN	hypothetical protein LOC57482	365	Glu-rich.									ovary(1)|skin(1)	2	Glioma(25;0.08)|all_neural(26;0.101)					ctcaaaaggcaggaggaggagga	0.177													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	154051167	154051168	+	IGR	INS	-	CAC	CAC	rs150006407	by1000genomes	TCGA-ET-A3DP-01A-11D-A21A-08	TCGA-ET-A3DP-11A-22D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d8a9ef-371b-4aff-a116-6e38a084f140	43940b7d-7b62-4832-9622-16fd0730a98e	g.chr4:154051167_154051168insCAC								FHDC1 (150319 upstream) : TRIM2 (23102 downstream)																							accactaccatcaccaccatca	0.000													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	137925874	137925874	+	IGR	DEL	T	-	-			TCGA-ET-A3DP-01A-11D-A21A-08	TCGA-ET-A3DP-11A-22D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e1d8a9ef-371b-4aff-a116-6e38a084f140	43940b7d-7b62-4832-9622-16fd0730a98e	g.chr9:137925874delT								FCN1 (116065 upstream) : OLFM1 (41215 downstream)																							cccatccccctctccgctgac	0.259													4	2	---	---	---	---					
