Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
NUP210L	91181	broad.mit.edu	37	1	154101784	154101784	+	Silent	SNP	G	A	A			TCGA-ET-A3DR-01A-11D-A19J-08	TCGA-ET-A3DR-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	72145918-7810-499b-bbef-00874eb19c49	4edfa5f1-438e-4afb-8fa2-a02941c1bc59	g.chr1:154101784G>A	uc001fdw.2	-	8	1119	c.1047C>T	c.(1045-1047)TGC>TGT	p.C349C	NUP210L_uc009woq.2_5'UTR|NUP210L_uc010peh.1_Silent_p.C349C	NM_207308	NP_997191	Q5VU65	P210L_HUMAN	nucleoporin 210kDa-like isoform 1	349						integral to membrane				skin(5)|ovary(4)|large_intestine(1)|central_nervous_system(1)	11	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)		LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198)			CATATATGGTGCAATTTGGGA	0.368000													5	77	---	---	---	---	0	0	0.001984	0	0
PRKG1	5592	broad.mit.edu	37	10	54011361	54011361	+	Missense_Mutation	SNP	C	G	G			TCGA-ET-A3DR-01A-11D-A19J-08	TCGA-ET-A3DR-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	72145918-7810-499b-bbef-00874eb19c49	4edfa5f1-438e-4afb-8fa2-a02941c1bc59	g.chr10:54011361C>G	uc001jjm.2	+	10	1257	c.1063C>G	c.(1063-1065)CTG>GTG	p.L355V	PRKG1_uc001jjo.2_Missense_Mutation_p.L370V|PRKG1_uc009xow.1_Missense_Mutation_p.L73V|uc001jjq.1_Intron	NM_001098512	NP_001091982	Q13976	KGP1_HUMAN	protein kinase, cGMP-dependent, type I isoform	355					actin cytoskeleton organization|platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			lung(2)|stomach(1)|ovary(1)|central_nervous_system(1)|skin(1)	6		all_cancers(4;2.13e-08)|all_epithelial(4;2.44e-08)|all_lung(4;0.000173)		all cancers(4;1.18e-05)|GBM - Glioblastoma multiforme(4;0.000359)|Epithelial(53;0.00532)|Lung(62;0.0606)		CTTCGCCAACCTGAAGCTGTC	0.413000													15	51	---	---	---	---	0	0	0.007413	0	0
SLC25A45	283130	broad.mit.edu	37	11	65147382	65147382	+	Missense_Mutation	SNP	G	A	A			TCGA-ET-A3DR-01A-11D-A19J-08	TCGA-ET-A3DR-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	72145918-7810-499b-bbef-00874eb19c49	4edfa5f1-438e-4afb-8fa2-a02941c1bc59	g.chr11:65147382G>A	uc001odp.1	-	3	531	c.109C>T	c.(109-111)CGG>TGG	p.R37W	SLC25A45_uc009yqi.1_Missense_Mutation_p.R37W|SLC25A45_uc001odq.1_Intron|SLC25A45_uc001odr.1_Missense_Mutation_p.R37W|SLC25A45_uc001ods.1_5'UTR|SLC25A45_uc001odt.1_5'UTR	NM_001077241	NP_001070709	Q8N413	S2545_HUMAN	solute carrier family 25, member 45 isoform b	37	Solcar 1.				transmembrane transport	integral to membrane|mitochondrial inner membrane	binding				0						ACGATGCCCCGGTAGGTGGTC	0.627000													14	23	---	---	---	---	0	0	0.004990	0	0
XPO4	64328	broad.mit.edu	37	13	21374986	21374986	+	Missense_Mutation	SNP	T	C	C			TCGA-ET-A3DR-01A-11D-A19J-08	TCGA-ET-A3DR-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	72145918-7810-499b-bbef-00874eb19c49	4edfa5f1-438e-4afb-8fa2-a02941c1bc59	g.chr13:21374986T>C	uc001unq.3	-	14	1997	c.1961A>G	c.(1960-1962)GAA>GGA	p.E654G		NM_022459	NP_071904	Q9C0E2	XPO4_HUMAN	exportin 4	654					protein transport	cytoplasm|nucleus	protein binding			large_intestine(1)|ovary(1)|kidney(1)	3		all_cancers(29;5.05e-24)|all_epithelial(30;5.56e-20)|all_lung(29;2.38e-16)|Lung SC(185;0.0262)|Hepatocellular(188;0.244)		all cancers(112;0.000521)|Epithelial(112;0.000892)|OV - Ovarian serous cystadenocarcinoma(117;0.0148)|Lung(94;0.0189)|LUSC - Lung squamous cell carcinoma(192;0.0548)		ATACAGTTTTTCATCCACCAG	0.368000													14	156	---	---	---	---	0	0	0.006122	0	0
EZH1	2145	broad.mit.edu	37	17	40879769	40879769	+	Missense_Mutation	SNP	C	T	T			TCGA-ET-A3DR-01A-11D-A19J-08	TCGA-ET-A3DR-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	72145918-7810-499b-bbef-00874eb19c49	4edfa5f1-438e-4afb-8fa2-a02941c1bc59	g.chr17:40879769C>T	uc002iaz.2	-	4	275	c.130G>A	c.(130-132)GCA>ACA	p.A44T	EZH1_uc002iba.2_Missense_Mutation_p.A44T|EZH1_uc010wgt.1_5'UTR|EZH1_uc010wgu.1_Missense_Mutation_p.A50T|EZH1_uc010wgv.1_Missense_Mutation_p.A44T|EZH1_uc010wgw.1_5'UTR|EZH1_uc010cyp.2_5'UTR|EZH1_uc010cyq.2_Intron|EZH1_uc010cys.2_Missense_Mutation_p.A44T	NM_001991	NP_001982	Q92800	EZH1_HUMAN	enhancer of zeste homolog 1	44					anatomical structure morphogenesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ESC/E(Z) complex	chromatin binding|DNA binding			ovary(3)	3		Breast(137;0.00104)		BRCA - Breast invasive adenocarcinoma(366;0.0784)		GCAAAATTTGCCACATACAAA	0.289000													3	63	---	---	---	---	0	0	0.004672	0	0
DCAKD	79877	broad.mit.edu	37	17	43101857	43101857	+	Missense_Mutation	SNP	C	T	T	rs146466512	byFrequency	TCGA-ET-A3DR-01A-11D-A19J-08	TCGA-ET-A3DR-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	72145918-7810-499b-bbef-00874eb19c49	4edfa5f1-438e-4afb-8fa2-a02941c1bc59	g.chr17:43101857C>T	uc002ihx.2	-	4	896	c.640G>A	c.(640-642)GCT>ACT	p.A214T	DCAKD_uc010daa.1_Missense_Mutation_p.A214T|DCAKD_uc010dab.1_Missense_Mutation_p.A214T	NM_024819	NP_079095	Q8WVC6	DCAKD_HUMAN	dephospho-CoA kinase domain containing	214					coenzyme A biosynthetic process		ATP binding|dephospho-CoA kinase activity				0		Prostate(33;0.155)				GCAATGGCAGCGAGCCCTGTG	0.617000													12	32	---	---	---	---	0	0	0.003163	0	0
B4GALNT2	124872	broad.mit.edu	37	17	47247083	47247083	+	Missense_Mutation	SNP	C	T	T			TCGA-ET-A3DR-01A-11D-A19J-08	TCGA-ET-A3DR-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	72145918-7810-499b-bbef-00874eb19c49	4edfa5f1-438e-4afb-8fa2-a02941c1bc59	g.chr17:47247083C>T	uc002ion.2	+	11	1753	c.1694C>T	c.(1693-1695)GCC>GTC	p.A565V	B4GALNT2_uc010wlt.1_Missense_Mutation_p.A479V|B4GALNT2_uc010wlu.1_Missense_Mutation_p.A505V	NM_153446	NP_703147	Q8NHY0	B4GN2_HUMAN	beta-1,4-N-acetyl-galactosaminyl transferase 2	565	Lumenal (Potential).				lipid glycosylation|negative regulation of cell-cell adhesion|UDP-N-acetylgalactosamine metabolic process	integral to Golgi membrane	acetylgalactosaminyltransferase activity			large_intestine(1)|ovary(1)	2			all cancers(6;0.000316)			CTCCAATGTGCCGCATAAAGG	0.512000													3	21	---	---	---	---	0	0	0.004672	0	0
KIAA0195	9772	broad.mit.edu	37	17	73489653	73489653	+	Missense_Mutation	SNP	A	G	G			TCGA-ET-A3DR-01A-11D-A19J-08	TCGA-ET-A3DR-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	72145918-7810-499b-bbef-00874eb19c49	4edfa5f1-438e-4afb-8fa2-a02941c1bc59	g.chr17:73489653A>G	uc002jnz.3	+	17	2443	c.2168A>G	c.(2167-2169)TAC>TGC	p.Y723C	KIAA0195_uc010wsa.1_Missense_Mutation_p.Y733C|KIAA0195_uc010wsb.1_Missense_Mutation_p.Y363C|KIAA0195_uc002job.3_5'Flank	NM_014738	NP_055553	Q12767	K0195_HUMAN	hypothetical protein LOC9772	723					ATP biosynthetic process|cation transport	integral to membrane	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism			ovary(1)	1	all_cancers(13;3.15e-09)|all_epithelial(9;5.94e-10)|Breast(9;1.85e-09)|all_lung(278;0.246)		all cancers(21;5.01e-07)|Epithelial(20;5e-06)|Lung(188;0.0809)|LUSC - Lung squamous cell carcinoma(166;0.154)			GCTGACATCTACCCTCTCTCG	0.602000													20	36	---	---	---	---	0	0	0.003954	0	0
GPR113	165082	broad.mit.edu	37	2	26536378	26536378	+	Missense_Mutation	SNP	T	G	G			TCGA-ET-A3DR-01A-11D-A19J-08	TCGA-ET-A3DR-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	72145918-7810-499b-bbef-00874eb19c49	4edfa5f1-438e-4afb-8fa2-a02941c1bc59	g.chr2:26536378T>G	uc002rhe.3	-	9	1340	c.1340A>C	c.(1339-1341)CAC>CCC	p.H447P	GPR113_uc010yky.1_Missense_Mutation_p.H378P|GPR113_uc002rhb.1_Missense_Mutation_p.H50P|GPR113_uc010eyk.1_Missense_Mutation_p.H248P|GPR113_uc002rhc.1_Missense_Mutation_p.H50P|GPR113_uc002rhd.1_RNA	NM_001145168	NP_001138640	Q8IZF5	GP113_HUMAN	G-protein coupled receptor 113 isoform 1	447	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CTGTGCCACGTGGCCAGCCTT	0.612000													6	14	---	---	---	---	0	0	0.001168	0	0
TRMT61B	55006	broad.mit.edu	37	2	29092975	29092975	+	Missense_Mutation	SNP	C	T	T			TCGA-ET-A3DR-01A-11D-A19J-08	TCGA-ET-A3DR-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	72145918-7810-499b-bbef-00874eb19c49	4edfa5f1-438e-4afb-8fa2-a02941c1bc59	g.chr2:29092975C>T	uc002rmm.2	-	1	201	c.169G>A	c.(169-171)GCA>ACA	p.A57T	TRMT61B_uc002rmn.2_Missense_Mutation_p.A57T|TRMT61B_uc010ezk.2_RNA	NM_017910	NP_060380	Q9BVS5	TR61B_HUMAN	tRNA methyltransferase 61 homolog B	57							tRNA (adenine-N1-)-methyltransferase activity				0						TTCCTTTGTGCCGCCTCGTGC	0.592000													4	56	---	---	---	---	0	0	0.000248	0	0
Unknown	0	broad.mit.edu	37	22	18846140	18846140	+	RNA	SNP	T	C	C			TCGA-ET-A3DR-01A-11D-A19J-08	TCGA-ET-A3DR-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	72145918-7810-499b-bbef-00874eb19c49	4edfa5f1-438e-4afb-8fa2-a02941c1bc59	g.chr22:18846140T>C	uc002zoe.2	+	5		c.2502T>C			uc002zof.2_5'Flank					Homo sapiens cDNA FLJ76361 complete cds.																		TAGGGCACCTTGGACCTCTCT	0.617000													3	27	---	---	---	---	0	0	0.000602	0	0
LOC96610	96610	broad.mit.edu	37	22	22661187	22661187	+	RNA	SNP	G	A	A			TCGA-ET-A3DR-01A-11D-A19J-08	TCGA-ET-A3DR-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	72145918-7810-499b-bbef-00874eb19c49	4edfa5f1-438e-4afb-8fa2-a02941c1bc59	g.chr22:22661187G>A	uc011aim.1	+	27		c.1613G>A			LOC96610_uc011aiq.1_RNA|LOC96610_uc011aip.1_Intron|LOC96610_uc010gto.2_RNA					Parts of antibodies, mostly variable regions.												0						CCCCCACCCCGTCATGTACAG	0.413000													5	40	---	---	---	---	0	0	0.001168	0	0
LOC96610	96610	broad.mit.edu	37	22	22661208	22661208	+	RNA	SNP	C	T	T			TCGA-ET-A3DR-01A-11D-A19J-08	TCGA-ET-A3DR-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	72145918-7810-499b-bbef-00874eb19c49	4edfa5f1-438e-4afb-8fa2-a02941c1bc59	g.chr22:22661208C>T	uc011aim.1	+	27		c.1634C>T			LOC96610_uc011aiq.1_RNA|LOC96610_uc011aip.1_RNA|LOC96610_uc010gto.2_RNA					Parts of antibodies, mostly variable regions.												0						CTGAATCATGCAGAATTTGAA	0.408000													5	49	---	---	---	---	0	0	0.004482	0	0
DBR1	51163	broad.mit.edu	37	3	137892448	137892448	+	Missense_Mutation	SNP	T	C	C			TCGA-ET-A3DR-01A-11D-A19J-08	TCGA-ET-A3DR-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	72145918-7810-499b-bbef-00874eb19c49	4edfa5f1-438e-4afb-8fa2-a02941c1bc59	g.chr3:137892448T>C	uc003erv.2	-	2	354	c.218A>G	c.(217-219)AAG>AGG	p.K73R	DBR1_uc003eru.2_Missense_Mutation_p.K22R	NM_016216	NP_057300	Q9UK59	DBR1_HUMAN	debranching enzyme homolog 1	73						nucleus	metal ion binding|RNA lariat debranching enzyme activity				0						AACTGGAGCCTTTTTCTCTCC	0.398000													3	126	---	---	---	---	0	0	0.000602	0	0
MED12L	116931	broad.mit.edu	37	3	151129080	151129080	+	Silent	SNP	C	T	T			TCGA-ET-A3DR-01A-11D-A19J-08	TCGA-ET-A3DR-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	72145918-7810-499b-bbef-00874eb19c49	4edfa5f1-438e-4afb-8fa2-a02941c1bc59	g.chr3:151129080C>T	uc003eyp.2	+	39	5858	c.5820C>T	c.(5818-5820)GGC>GGT	p.G1940G	MED12L_uc011bnz.1_Intron	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	1940	Gln-rich.				regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TGCCACAGGGCTATACAATGT	0.502000													18	41	---	---	---	---	0	0	0.004990	0	0
FBN2	2201	broad.mit.edu	37	5	127674746	127674746	+	Silent	SNP	G	A	A	rs78484531	byFrequency	TCGA-ET-A3DR-01A-11D-A19J-08	TCGA-ET-A3DR-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	72145918-7810-499b-bbef-00874eb19c49	4edfa5f1-438e-4afb-8fa2-a02941c1bc59	g.chr5:127674746G>A	uc003kuu.2	-	26	3790	c.3351C>T	c.(3349-3351)GAC>GAT	p.D1117D	FBN2_uc003kuv.2_Silent_p.D1084D	NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	1117	EGF-like 16; calcium-binding.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		TCCTGCACTCGTCGATGTCTA	0.458000													23	40	---	---	---	---	0	0	0.003330	0	0
HSPA4	3308	broad.mit.edu	37	5	132400700	132400700	+	Missense_Mutation	SNP	C	T	T			TCGA-ET-A3DR-01A-11D-A19J-08	TCGA-ET-A3DR-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	72145918-7810-499b-bbef-00874eb19c49	4edfa5f1-438e-4afb-8fa2-a02941c1bc59	g.chr5:132400700C>T	uc003kyj.2	+	2	417	c.136C>T	c.(136-138)CGT>TGT	p.R46C		NM_002154	NP_002145	P34932	HSP74_HUMAN	heat shock 70kDa protein 4	46					cellular chaperone-mediated protein complex assembly|protein import into mitochondrial outer membrane|response to unfolded protein	cytoplasm|nucleus	ATP binding			lung(1)|breast(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TCCTAAGAATCGTTCAATTGG	0.294000													5	73	---	---	---	---	0	0	0.001168	0	0
SASH1	23328	broad.mit.edu	37	6	148840738	148840738	+	Silent	SNP	C	G	G			TCGA-ET-A3DR-01A-11D-A19J-08	TCGA-ET-A3DR-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	72145918-7810-499b-bbef-00874eb19c49	4edfa5f1-438e-4afb-8fa2-a02941c1bc59	g.chr6:148840738C>G	uc003qme.1	+	10	1393	c.918C>G	c.(916-918)CTC>CTG	p.L306L	SASH1_uc011eeb.1_Silent_p.L67L	NM_015278	NP_056093	O94885	SASH1_HUMAN	SAM and SH3 domain containing 1	306							protein binding			central_nervous_system(1)	1		Ovarian(120;0.0169)		OV - Ovarian serous cystadenocarcinoma(155;5.63e-11)|GBM - Glioblastoma multiforme(68;0.0701)		GGTCCGCCCTCTACTCTGGCG	0.542000													12	23	---	---	---	---	0	0	0.002450	0	0
ARID1B	57492	broad.mit.edu	37	6	157528640	157528640	+	Missense_Mutation	SNP	G	A	A			TCGA-ET-A3DR-01A-11D-A19J-08	TCGA-ET-A3DR-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	72145918-7810-499b-bbef-00874eb19c49	4edfa5f1-438e-4afb-8fa2-a02941c1bc59	g.chr6:157528640G>A	uc003qqn.2	+	20	6463	c.6311G>A	c.(6310-6312)CGC>CAC	p.R2104H	ARID1B_uc003qqo.2_Missense_Mutation_p.R2064H|ARID1B_uc003qqp.2_Missense_Mutation_p.R2051H	NM_017519	NP_059989	Q8NFD5	ARI1B_HUMAN	AT rich interactive domain 1B (SWI1-like)	2109					chromatin-mediated maintenance of transcription|nervous system development|transcription, DNA-dependent	SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			ovary(1)|breast(1)	2		Breast(66;0.000162)|Ovarian(120;0.0265)		OV - Ovarian serous cystadenocarcinoma(65;3.19e-17)|BRCA - Breast invasive adenocarcinoma(81;1.01e-05)		GTTGGGGATCGCAAAAACCCA	0.493000													6	244	---	---	---	---	0	0	0.003080	0	0
SPDYE7P	441251	broad.mit.edu	37	7	72339497	72339497	+	RNA	SNP	T	C	C	rs390732	by1000genomes	TCGA-ET-A3DR-01A-11D-A19J-08	TCGA-ET-A3DR-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	72145918-7810-499b-bbef-00874eb19c49	4edfa5f1-438e-4afb-8fa2-a02941c1bc59	g.chr7:72339497T>C	uc010lal.1	-	1		c.159A>G				NR_003666				Homo sapiens speedy homolog E7 (Xenopus laevis), pseudogene (SPDYE7P), non-coding RNA.												0						TCCTCAGATTTGTCCCACCAC	0.582000													3	33	---	---	---	---	0	0	0.004672	0	0
MLL5	55904	broad.mit.edu	37	7	104715089	104715089	+	Splice_Site	SNP	G	T	T			TCGA-ET-A3DR-01A-11D-A19J-08	TCGA-ET-A3DR-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	72145918-7810-499b-bbef-00874eb19c49	4edfa5f1-438e-4afb-8fa2-a02941c1bc59	g.chr7:104715089G>T	uc003vcm.2	+	8	1091	c.557_splice	c.e8-1	p.D186_splice	MLL5_uc010lja.1_Splice_Site_p.D40_splice|MLL5_uc010ljb.1_Splice_Site_p.D186_splice|MLL5_uc003vcl.2_Splice_Site_p.D186_splice|MLL5_uc010ljc.2_Splice_Site_p.D186_splice|MLL5_uc003vco.1_5'Flank|MLL5_uc010ljd.1_5'Flank	NM_182931	NP_891847	Q8IZD2	MLL5_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 5						cell cycle arrest|cellular response to retinoic acid|DNA methylation|erythrocyte differentiation|neutrophil activation|neutrophil mediated immunity|positive regulation of granulocyte differentiation|positive regulation of transcription, DNA-dependent|retinoic acid receptor signaling pathway|transcription, DNA-dependent	MLL5-L complex|nuclear speck	enzyme binding|histone methyltransferase activity (H3-K4 specific)|transcription coactivator activity|zinc ion binding			ovary(2)|pancreas(1)	3						TTTGTCTGAAGATGGTGATAC	0.333000													37	73	---	---	---	---	1.04594e-18	1.20937e-18	0.006230	1	0
MXRA5	25878	broad.mit.edu	37	X	3240646	3240646	+	Missense_Mutation	SNP	C	G	G			TCGA-ET-A3DR-01A-11D-A19J-08	TCGA-ET-A3DR-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	72145918-7810-499b-bbef-00874eb19c49	4edfa5f1-438e-4afb-8fa2-a02941c1bc59	g.chrX:3240646C>G	uc004crg.3	-	5	3237	c.3080G>C	c.(3079-3081)GGT>GCT	p.G1027A		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1027						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GCCTGGGACACCTGGTTCCCC	0.443000													36	69	---	---	---	---	0	0	0.003755	0	0
KLHL4	56062	broad.mit.edu	37	X	86919891	86919891	+	Missense_Mutation	SNP	A	G	G			TCGA-ET-A3DR-01A-11D-A19J-08	TCGA-ET-A3DR-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	72145918-7810-499b-bbef-00874eb19c49	4edfa5f1-438e-4afb-8fa2-a02941c1bc59	g.chrX:86919891A>G	uc004efb.2	+	10	2235	c.2053A>G	c.(2053-2055)AAC>GAC	p.N685D	KLHL4_uc004efa.2_Missense_Mutation_p.N685D	NM_019117	NP_061990	Q9C0H6	KLHL4_HUMAN	kelch-like 4 isoform 1	685	Kelch 6.					cytoplasm|microtubule cytoskeleton|nucleolus	actin binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						TACTTATTTGAACACAGTTGA	0.378000													16	18	---	---	---	---	0	0	0.006122	0	0
Unknown	0	broad.mit.edu	37	1	79132207	79132207	+	IGR	DEL	A	-	-	rs149208484		TCGA-ET-A3DR-01A-11D-A19J-08	TCGA-ET-A3DR-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	72145918-7810-499b-bbef-00874eb19c49	4edfa5f1-438e-4afb-8fa2-a02941c1bc59	g.chr1:79132207delA								IFI44 (2446 upstream) : ELTD1 (223244 downstream)																							GTAGTTCAACAAAAAAAAAGT	0.408													2	4	---	---	---	---					
RPTN	126638	broad.mit.edu	37	1	152128169	152128172	+	Frame_Shift_Del	DEL	TGTC	-	-			TCGA-ET-A3DR-01A-11D-A19J-08	TCGA-ET-A3DR-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	72145918-7810-499b-bbef-00874eb19c49	4edfa5f1-438e-4afb-8fa2-a02941c1bc59	g.chr1:152128169_152128172delTGTC	uc001ezs.1	-	3	1468_1471	c.1403_1406delGACA	c.(1402-1407)AGACAAfs	p.R468fs		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	468_469	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						ACTCTGGCCTTGTCTGTCTGTCTG	0.500													7	1037	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	26372632	26372632	+	IGR	DEL	C	-	-			TCGA-ET-A3DR-01A-11D-A19J-08	TCGA-ET-A3DR-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	72145918-7810-499b-bbef-00874eb19c49	4edfa5f1-438e-4afb-8fa2-a02941c1bc59	g.chr2:26372632delC								RAB10 (12310 upstream) : HADHA (40873 downstream)																							Cttttcatttctttttttttt	0.229													4	7	---	---	---	---					
ATXN1	6310	broad.mit.edu	37	6	16327913	16327915	+	In_Frame_Del	DEL	TGA	-	-	rs11969612	by1000genomes	TCGA-ET-A3DR-01A-11D-A19J-08	TCGA-ET-A3DR-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	72145918-7810-499b-bbef-00874eb19c49	4edfa5f1-438e-4afb-8fa2-a02941c1bc59	g.chr6:16327913_16327915delTGA	uc003nbt.2	-	8	1598_1600	c.627_629delTCA	c.(625-630)CATCAG>CAG	p.H209del	ATXN1_uc010jpi.2_In_Frame_Del_p.H209del|ATXN1_uc010jpj.1_Intron	NM_000332	NP_000323	P54253	ATX1_HUMAN	ataxin 1	209	Poly-Gln.				cell death|negative regulation of transcription, DNA-dependent|nuclear export|RNA processing	cytoplasm|nuclear inclusion body|nuclear matrix|nucleoplasm	identical protein binding|poly(G) RNA binding|poly(U) RNA binding|protein binding|protein C-terminus binding|protein self-association			skin(3)|central_nervous_system(1)	4	Breast(50;0.063)|Ovarian(93;0.0733)	all_hematologic(90;0.000682)|Ovarian(999;0.00973)				ctgctgatgctgatgctgctgct	0.379													6	13	---	---	---	---					
