Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
TP73	7161	broad.mit.edu	37	1	3624240	3624240	+	Missense_Mutation	SNP	C	T	T			TCGA-ET-A3DV-01A-12D-A202-08	TCGA-ET-A3DV-11A-11D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5deeaa45-4c1b-4ab2-a487-93c548838f68	bba5ac91-59b6-4cae-9199-e31d43571f57	g.chr1:3624240C>T	uc001akp.2	+	4	424	c.314C>T	c.(313-315)ACC>ATC	p.T105I	TP73_uc001akq.2_Missense_Mutation_p.T105I|TP73_uc010nzj.1_Missense_Mutation_p.T56I|TP73_uc001akr.2_Missense_Mutation_p.T56I|TP73_uc009vlk.1_Missense_Mutation_p.T56I|TP73_uc001aks.2_Missense_Mutation_p.T56I|TP73_uc009vll.2_Missense_Mutation_p.T34I|TP73_uc010nzk.1_Missense_Mutation_p.T34I	NM_005427	NP_005418	O15350	P73_HUMAN	tumor protein p73 isoform a	105					cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mismatch repair|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of JUN kinase activity|negative regulation of neuron apoptosis|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|protein tetramerization|response to gamma radiation|response to X-ray	chromatin|cytosol|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|metal ion binding|p53 binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|transcription repressor activity			ovary(1)|lung(1)	2	all_cancers(77;0.0395)|Ovarian(185;0.0634)|Lung NSC(156;0.188)|all_lung(157;0.198)	all_epithelial(116;7.42e-17)|all_lung(118;1.86e-06)|Lung NSC(185;0.000163)|Renal(390;0.00357)|Breast(487;0.00446)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Lung SC(97;0.109)|Ovarian(437;0.127)		Epithelial(90;5.57e-38)|OV - Ovarian serous cystadenocarcinoma(86;1.87e-22)|GBM - Glioblastoma multiforme(42;5.72e-16)|Colorectal(212;2.22e-05)|COAD - Colon adenocarcinoma(227;8.48e-05)|Kidney(185;0.000539)|BRCA - Breast invasive adenocarcinoma(365;0.000868)|STAD - Stomach adenocarcinoma(132;0.0072)|KIRC - Kidney renal clear cell carcinoma(229;0.00751)|Lung(427;0.226)		CCCAGCTCCACCTTCGACACC	0.672000													36	53	---	---	---	---	0	0	0.005524	0	0
ZZZ3	26009	broad.mit.edu	37	1	78097775	78097775	+	Missense_Mutation	SNP	T	A	A			TCGA-ET-A3DV-01A-12D-A202-08	TCGA-ET-A3DV-11A-11D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5deeaa45-4c1b-4ab2-a487-93c548838f68	bba5ac91-59b6-4cae-9199-e31d43571f57	g.chr1:78097775T>A	uc001dhq.2	-	5	1741	c.1265A>T	c.(1264-1266)AAT>ATT	p.N422I	ZZZ3_uc001dhr.2_Intron|ZZZ3_uc009wbz.1_Missense_Mutation_p.N422I|ZZZ3_uc001dhp.2_Missense_Mutation_p.N422I	NM_015534	NP_056349	Q8IYH5	ZZZ3_HUMAN	zinc finger, ZZ-type containing 3	422					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|large_intestine(1)	5						TTGACTTACATTATCACTAAC	0.343000													4	86	---	---	---	---	0	0	0.000602	0	0
CR2	1380	broad.mit.edu	37	1	207643143	207643143	+	Silent	SNP	G	A	A			TCGA-ET-A3DV-01A-12D-A202-08	TCGA-ET-A3DV-11A-11D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5deeaa45-4c1b-4ab2-a487-93c548838f68	bba5ac91-59b6-4cae-9199-e31d43571f57	g.chr1:207643143G>A	uc001hfw.2	+	6	1015	c.921G>A	c.(919-921)CCG>CCA	p.P307P	CR2_uc001hfv.2_Silent_p.P307P|CR2_uc009xch.2_Silent_p.P307P|CR2_uc009xci.1_5'Flank	NM_001877	NP_001868	P20023	CR2_HUMAN	complement component (3d/Epstein Barr virus)	307	Sushi 5.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to membrane|plasma membrane	complement receptor activity|protein homodimerization activity			upper_aerodigestive_tract(3)|skin(3)|urinary_tract(1)|ovary(1)	8						CTTGTGACCCGGACCCAGAGG	0.488000													4	98	---	---	---	---	0	0	0.009096	0	0
LDB3	11155	broad.mit.edu	37	10	88441198	88441198	+	Silent	SNP	C	T	T			TCGA-ET-A3DV-01A-12D-A202-08	TCGA-ET-A3DV-11A-11D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5deeaa45-4c1b-4ab2-a487-93c548838f68	bba5ac91-59b6-4cae-9199-e31d43571f57	g.chr10:88441198C>T	uc001kdv.2	+	4	350	c.327C>T	c.(325-327)CCC>CCT	p.P109P	LDB3_uc010qml.1_Silent_p.P109P|LDB3_uc010qmm.1_Silent_p.P109P|LDB3_uc001kdu.2_Intron|LDB3_uc009xsz.2_Intron|LDB3_uc001kdr.2_Intron|LDB3_uc009xsy.2_Silent_p.P109P|LDB3_uc001kds.2_Silent_p.P109P|LDB3_uc001kdt.2_RNA	NM_007078	NP_009009	O75112	LDB3_HUMAN	LIM domain binding 3 isoform 1	109						cytoskeleton|perinuclear region of cytoplasm|pseudopodium	zinc ion binding			ovary(1)	1						GCCAGGACCCCGCTCTGGACA	0.677000													4	183	---	---	---	---	0	0	0.001168	0	0
FAM35A	54537	broad.mit.edu	37	10	88911225	88911225	+	Missense_Mutation	SNP	A	T	T			TCGA-ET-A3DV-01A-12D-A202-08	TCGA-ET-A3DV-11A-11D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5deeaa45-4c1b-4ab2-a487-93c548838f68	bba5ac91-59b6-4cae-9199-e31d43571f57	g.chr10:88911225A>T	uc001kei.3	+	3	228	c.114A>T	c.(112-114)AAA>AAT	p.K38N		NM_019054	NP_061927	Q86V20	FA35A_HUMAN	hypothetical protein LOC54537	38										ovary(2)|skin(2)	4						CCTGGAAAAAAATTCAGCTTT	0.373000													21	16	---	---	---	---	0	0	0.010504	0	0
KRTAP5-5	439915	broad.mit.edu	37	11	1651181	1651181	+	Silent	SNP	C	A	A			TCGA-ET-A3DV-01A-12D-A202-08	TCGA-ET-A3DV-11A-11D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5deeaa45-4c1b-4ab2-a487-93c548838f68	bba5ac91-59b6-4cae-9199-e31d43571f57	g.chr11:1651181C>A	uc001lty.2	+	1	149	c.111C>A	c.(109-111)GGC>GGA	p.G37G		NM_001001480	NP_001001480	Q701N2	KRA55_HUMAN	keratin associated protein 5-5	37						keratin filament				lung(1)	1		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		gctgtgggggctgtggctccg	0.080000													5	75	---	---	---	---	5.18039e-06	7.42523e-06	0.003080	1	0
PPP2R1B	5519	broad.mit.edu	37	11	111625705	111625705	+	Silent	SNP	T	C	C			TCGA-ET-A3DV-01A-12D-A202-08	TCGA-ET-A3DV-11A-11D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5deeaa45-4c1b-4ab2-a487-93c548838f68	bba5ac91-59b6-4cae-9199-e31d43571f57	g.chr11:111625705T>C	uc001plx.1	-	7	1041	c.957A>G	c.(955-957)AAA>AAG	p.K319K	PPP2R1B_uc001plw.1_Silent_p.K319K|PPP2R1B_uc010rwi.1_Silent_p.K255K|PPP2R1B_uc010rwj.1_Silent_p.K158K|PPP2R1B_uc010rwk.1_Silent_p.K319K|PPP2R1B_uc010rwl.1_Silent_p.K192K	NM_002716	NP_002707	P30154	2AAB_HUMAN	beta isoform of regulatory subunit A, protein	319	HEAT 8.						protein binding				0		all_cancers(61;2.34e-15)|all_epithelial(67;1.72e-09)|Melanoma(852;1.91e-06)|all_hematologic(158;0.000405)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0112)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;1.13e-06)|Epithelial(105;2.36e-06)|all cancers(92;3.78e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0761)		CTCCTTAACCTTTTACTTTGT	0.383000													3	80	---	---	---	---	0	0	0.009096	0	0
LOC374491	374491	broad.mit.edu	37	13	25169937	25169937	+	RNA	SNP	A	C	C			TCGA-ET-A3DV-01A-12D-A202-08	TCGA-ET-A3DV-11A-11D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5deeaa45-4c1b-4ab2-a487-93c548838f68	bba5ac91-59b6-4cae-9199-e31d43571f57	g.chr13:25169937A>C	uc001upm.2	+	11		c.1184A>C			LOC374491_uc001upn.2_RNA|LOC374491_uc001upo.2_Intron					Homo sapiens mRNA; cDNA DKFZp434J0717 (from clone DKFZp434J0717).												0						AATCTTCCTAAATACTATGAC	0.264000													2	8	---	---	---	---	0	0	0.004672	0	0
TRIM13	10206	broad.mit.edu	37	13	50586828	50586828	+	Missense_Mutation	SNP	A	G	G			TCGA-ET-A3DV-01A-12D-A202-08	TCGA-ET-A3DV-11A-11D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5deeaa45-4c1b-4ab2-a487-93c548838f68	bba5ac91-59b6-4cae-9199-e31d43571f57	g.chr13:50586828A>G	uc001vdq.1	+	3	1065	c.752A>G	c.(751-753)CAG>CGG	p.Q251R	DLEU2_uc001vdn.1_Intron|DLEU2_uc001vdo.1_Intron|KCNRG_uc001vdt.2_5'Flank|KCNRG_uc001vdu.2_5'Flank|TRIM13_uc001vdp.1_Missense_Mutation_p.Q254R|TRIM13_uc001vdr.1_Missense_Mutation_p.Q251R|TRIM13_uc001vds.1_Missense_Mutation_p.Q251R	NM_052811	NP_434698	O60858	TRI13_HUMAN	ret finger protein 2 isoform 1	251					anatomical structure morphogenesis|ER-associated protein catabolic process|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein autoubiquitination	cytoplasm|endoplasmic reticulum membrane|integral to membrane	protein binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2		Acute lymphoblastic leukemia(7;3.41e-06)|Lung NSC(96;3.08e-05)|Breast(56;9.7e-05)|Prostate(109;0.00174)|Hepatocellular(98;0.0207)|Myeloproliferative disorder(33;0.163)|Lung SC(185;0.187)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;1.53e-10)|COAD - Colon adenocarcinoma(199;0.205)		TTTCTGCAACAGATGCAGGAG	0.413000													6	127	---	---	---	---	0	0	0.001984	0	0
MYCBP2	23077	broad.mit.edu	37	13	77740543	77740543	+	Missense_Mutation	SNP	A	T	T			TCGA-ET-A3DV-01A-12D-A202-08	TCGA-ET-A3DV-11A-11D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5deeaa45-4c1b-4ab2-a487-93c548838f68	bba5ac91-59b6-4cae-9199-e31d43571f57	g.chr13:77740543A>T	uc001vkf.2	-	42	6238	c.6147T>A	c.(6145-6147)CAT>CAA	p.H2049Q	MYCBP2_uc010aev.2_Missense_Mutation_p.H1453Q	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	2049					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		TAAGATTTTCATGAACAGATG	0.383000													5	72	---	---	---	---	0	0	0.000602	0	0
PNN	5411	broad.mit.edu	37	14	39650419	39650419	+	Silent	SNP	T	C	C			TCGA-ET-A3DV-01A-12D-A202-08	TCGA-ET-A3DV-11A-11D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5deeaa45-4c1b-4ab2-a487-93c548838f68	bba5ac91-59b6-4cae-9199-e31d43571f57	g.chr14:39650419T>C	uc001wuw.3	+	9	1603	c.1506T>C	c.(1504-1506)CCT>CCC	p.P502P		NM_002687	NP_002678	Q9H307	PININ_HUMAN	pinin, desmosome associated protein	502	Gln-rich.			PE->AA: Abolishes interaction with CTBP1 and shows moderate relief of CTBP1- mediated repression.	cell adhesion|regulation of transcription, DNA-dependent|transcription, DNA-dependent	catalytic step 2 spliceosome|desmosome|intermediate filament|nuclear speck	DNA binding|protein binding|structural molecule activity			ovary(1)	1	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.000565)|Lung(238;0.000711)	GBM - Glioblastoma multiforme(112;0.0119)		CCTCTCAGCCTGAGGATTTGT	0.363000													3	131	---	---	---	---	0	0	0.009096	0	0
NOX5	79400	broad.mit.edu	37	15	69349008	69349008	+	Missense_Mutation	SNP	G	T	T			TCGA-ET-A3DV-01A-12D-A202-08	TCGA-ET-A3DV-11A-11D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5deeaa45-4c1b-4ab2-a487-93c548838f68	bba5ac91-59b6-4cae-9199-e31d43571f57	g.chr15:69349008G>T	uc002ars.1	+	16	2290	c.2270G>T	c.(2269-2271)GGC>GTC	p.G757V	NOX5_uc002arp.1_Missense_Mutation_p.G739V|NOX5_uc002arq.1_Missense_Mutation_p.G711V|NOX5_uc010bid.1_Missense_Mutation_p.G722V|NOX5_uc002arr.1_Missense_Mutation_p.G729V|NOX5_uc010bie.1_Missense_Mutation_p.G557V|NOX5_uc010bif.1_RNA	NM_024505	NP_078781	Q96PH1	NOX5_HUMAN	NADPH oxidase, EF-hand calcium binding domain 5	757	Extracellular (Potential).				angiogenesis|angiogenesis|cytokine secretion|cytokinesis|electron transport chain|endothelial cell proliferation|induction of apoptosis|positive regulation of reactive oxygen species metabolic process|regulation of fusion of sperm to egg plasma membrane|regulation of proton transport|superoxide anion generation	endoplasmic reticulum|endoplasmic reticulum|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|hydrogen ion channel activity|NADP binding|superoxide-generating NADPH oxidase activity			breast(1)|pancreas(1)	2						GAGAAGTTCGGCTTCAGATTT	0.517000													48	36	---	---	---	---	1.56793e-16	2.32485e-16	0.014410	1	0
IRX6	79190	broad.mit.edu	37	16	55363139	55363139	+	Silent	SNP	C	T	T			TCGA-ET-A3DV-01A-12D-A202-08	TCGA-ET-A3DV-11A-11D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5deeaa45-4c1b-4ab2-a487-93c548838f68	bba5ac91-59b6-4cae-9199-e31d43571f57	g.chr16:55363139C>T	uc002ehy.2	+	5	1782	c.1249C>T	c.(1249-1251)CTG>TTG	p.L417L	IRX6_uc002ehx.2_Silent_p.L417L	NM_024335	NP_077311	P78412	IRX6_HUMAN	iroquois homeobox protein 6	417						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(5)|ovary(1)	6						CAAGTTTGCCCTGCAGGGACT	0.642000													8	140	---	---	---	---	0	0	0.008291	0	0
GZMM	3004	broad.mit.edu	37	19	547312	547312	+	Missense_Mutation	SNP	C	T	T			TCGA-ET-A3DV-01A-12D-A202-08	TCGA-ET-A3DV-11A-11D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5deeaa45-4c1b-4ab2-a487-93c548838f68	bba5ac91-59b6-4cae-9199-e31d43571f57	g.chr19:547312C>T	uc002low.1	+	2	133	c.88C>T	c.(88-90)CGG>TGG	p.R30W		NM_005317	NP_005308	P51124	GRAM_HUMAN	granzyme M precursor	30	Peptidase S1.				apoptosis|cytolysis|innate immune response|proteolysis	extracellular region	serine-type endopeptidase activity				0		all_cancers(10;1.94e-35)|all_epithelial(18;5.94e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CATCGGGGGCCGGGAGGTGAT	0.647000													78	84	---	---	---	---	0	0	0.014410	0	0
ZBTB32	27033	broad.mit.edu	37	19	36206734	36206734	+	Splice_Site	SNP	T	C	C			TCGA-ET-A3DV-01A-12D-A202-08	TCGA-ET-A3DV-11A-11D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5deeaa45-4c1b-4ab2-a487-93c548838f68	bba5ac91-59b6-4cae-9199-e31d43571f57	g.chr19:36206734T>C	uc002oay.2	+	3	1165	c.955_splice	c.e3+2	p.G319_splice	ZBTB32_uc002oaz.2_Intron|MLL4_uc010eei.2_5'Flank	NM_014383	NP_055198	Q9Y2Y4	ZBT32_HUMAN	zinc finger and BTB domain containing 32						DNA repair|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleoplasm	DNA binding|protein binding|transcription corepressor activity|zinc ion binding			ovary(1)|skin(1)	2	all_lung(56;2.22e-07)|Lung NSC(56;3.47e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CTACCCCAGGTAAGCCCCTCG	0.617000													3	84	---	---	---	---	0	0	0.004672	0	0
ZNF230	7773	broad.mit.edu	37	19	44515136	44515136	+	Silent	SNP	A	G	G			TCGA-ET-A3DV-01A-12D-A202-08	TCGA-ET-A3DV-11A-11D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5deeaa45-4c1b-4ab2-a487-93c548838f68	bba5ac91-59b6-4cae-9199-e31d43571f57	g.chr19:44515136A>G	uc002oyb.1	+	5	1196	c.945A>G	c.(943-945)AAA>AAG	p.K315K		NM_006300	NP_006291	Q9UIE0	ZN230_HUMAN	zinc finger protein 230	315	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)				AGTGTGGAAAAGGCTTCACTG	0.423000													3	206	---	---	---	---	0	0	0.004672	0	0
HIF3A	64344	broad.mit.edu	37	19	46815428	46815428	+	Missense_Mutation	SNP	G	T	T			TCGA-ET-A3DV-01A-12D-A202-08	TCGA-ET-A3DV-11A-11D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5deeaa45-4c1b-4ab2-a487-93c548838f68	bba5ac91-59b6-4cae-9199-e31d43571f57	g.chr19:46815428G>T	uc002peh.2	+	7	810	c.781G>T	c.(781-783)GTG>TTG	p.V261L	HIF3A_uc002pef.1_Missense_Mutation_p.V261L|HIF3A_uc002peg.3_Missense_Mutation_p.V261L|HIF3A_uc010xxx.1_RNA|HIF3A_uc002pei.3_Missense_Mutation_p.V205L|HIF3A_uc002pej.1_Missense_Mutation_p.V192L|HIF3A_uc002pek.2_Missense_Mutation_p.V205L|HIF3A_uc010xxy.1_Missense_Mutation_p.V192L|HIF3A_uc002pel.2_Missense_Mutation_p.V259L|HIF3A_uc010xxz.1_Missense_Mutation_p.V210L	NM_152795	NP_690008	Q9Y2N7	HIF3A_HUMAN	hypoxia inducible factor 3, alpha subunit	261	PAS 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Ovarian(192;0.00965)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00204)|all cancers(93;0.0107)|GBM - Glioblastoma multiforme(486;0.0489)|Epithelial(262;0.136)		GATTGCAGAAGTGGCTGGCTA	0.592000													9	241	---	---	---	---	0.00448238	0.0060232	0.004482	1	0
ZNF341	84905	broad.mit.edu	37	20	32341114	32341114	+	Missense_Mutation	SNP	G	A	A			TCGA-ET-A3DV-01A-12D-A202-08	TCGA-ET-A3DV-11A-11D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5deeaa45-4c1b-4ab2-a487-93c548838f68	bba5ac91-59b6-4cae-9199-e31d43571f57	g.chr20:32341114G>A	uc002wzy.2	+	5	646	c.626G>A	c.(625-627)CGT>CAT	p.R209H	ZNF341_uc002wzx.2_Missense_Mutation_p.R209H|ZNF341_uc010geq.2_Missense_Mutation_p.R119H|ZNF341_uc010ger.2_RNA	NM_032819	NP_116208	Q9BYN7	ZN341_HUMAN	zinc finger protein 341	209					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						CCCCCTGGGCGTCCCAACCCT	0.448000													13	10	---	---	---	---	0	0	0.013537	0	0
RABGAP1	23637	broad.mit.edu	37	9	125863904	125863904	+	Silent	SNP	A	G	G			TCGA-ET-A3DV-01A-12D-A202-08	TCGA-ET-A3DV-11A-11D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5deeaa45-4c1b-4ab2-a487-93c548838f68	bba5ac91-59b6-4cae-9199-e31d43571f57	g.chr9:125863904A>G	uc011lzh.1	+	25	3083	c.2949A>G	c.(2947-2949)AAA>AAG	p.K983K	RABGAP1_uc004bnl.3_RNA|RABGAP1_uc011lzj.1_Silent_p.K322K	NM_012197	NP_036329	Q9Y3P9	RBGP1_HUMAN	RAB GTPase activating protein 1	983	Potential.				cell cycle	centrosome|cytosol|microtubule associated complex	Rab GTPase activator activity|tubulin binding			ovary(3)|kidney(2)	5						GGCGTGTAAAAGGCATAAGCT	0.448000													3	68	---	---	---	---	0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	MT	3899	3899	+	RNA	SNP	T	C	C			TCGA-ET-A3DV-01A-12D-A202-08	TCGA-ET-A3DV-11A-11D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5deeaa45-4c1b-4ab2-a487-93c548838f68	bba5ac91-59b6-4cae-9199-e31d43571f57	g.chrM:3899T>C	uc004cos.3	+	2		c.2192T>C			uc011mfh.1_5'Flank					Homo sapiens mRNA expressed only in placental villi, clone SMAP47.																		CCGAACCCCCTTCGACCTTGC	0.498000													3	0	---	---	---	---	0	0	0.009096	0	0
Unknown	0	broad.mit.edu	37	MT	7788	7788	+	RNA	SNP	T	C	C			TCGA-ET-A3DV-01A-12D-A202-08	TCGA-ET-A3DV-11A-11D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5deeaa45-4c1b-4ab2-a487-93c548838f68	bba5ac91-59b6-4cae-9199-e31d43571f57	g.chrM:7788T>C	uc004cou.3	+	1		c.203T>C			uc011mfi.1_5'Flank|uc004cov.3_5'Flank					Homo sapiens mRNA expressed only in placental villi, clone SMAP42.																		CTGAACTATCCTGCCCGCCAT	0.468000													2	2	---	---	---	---	0	0	0.004672	0	0
GABRQ	55879	broad.mit.edu	37	X	151818902	151818902	+	Missense_Mutation	SNP	C	T	T			TCGA-ET-A3DV-01A-12D-A202-08	TCGA-ET-A3DV-11A-11D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5deeaa45-4c1b-4ab2-a487-93c548838f68	bba5ac91-59b6-4cae-9199-e31d43571f57	g.chrX:151818902C>T	uc004ffp.1	+	7	780	c.760C>T	c.(760-762)CGC>TGC	p.R254C		NM_018558	NP_061028	Q9UN88	GBRT_HUMAN	gamma-aminobutyric acid (GABA) receptor, theta	254	Extracellular (Potential).					cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|neurotransmitter transporter activity			ovary(2)|pancreas(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TTCCTACATACGCCTGATACT	0.522000													12	487	---	---	---	---	0	0	0.010729	0	0
Unknown	0	broad.mit.edu	37	11	49327166	49327167	+	IGR	INS	-	A	A			TCGA-ET-A3DV-01A-12D-A202-08	TCGA-ET-A3DV-11A-11D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5deeaa45-4c1b-4ab2-a487-93c548838f68	bba5ac91-59b6-4cae-9199-e31d43571f57	g.chr11:49327166_49327167insA								FOLH1 (96944 upstream) : LOC440040 (252913 downstream)																							GTAAAGTTAGcaaaaaaaaaaa	0.208													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	27288144	27288144	+	IGR	DEL	A	-	-	rs11301501		TCGA-ET-A3DV-01A-12D-A202-08	TCGA-ET-A3DV-11A-11D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5deeaa45-4c1b-4ab2-a487-93c548838f68	bba5ac91-59b6-4cae-9199-e31d43571f57	g.chr12:27288144delA								C12orf71 (52689 upstream) : STK38L (108934 downstream)																							CAGCACATTTAAAAAAAAAAA	0.348													4	2	---	---	---	---					
Unknown	0	broad.mit.edu	37	14	35163898	35163899	+	IGR	INS	-	A	A			TCGA-ET-A3DV-01A-12D-A202-08	TCGA-ET-A3DV-11A-11D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5deeaa45-4c1b-4ab2-a487-93c548838f68	bba5ac91-59b6-4cae-9199-e31d43571f57	g.chr14:35163898_35163899insA								SNX6 (64532 upstream) : CFL2 (15689 downstream)																							CTTTTCACCATAAAAAAAATTT	0.361													5	9	---	---	---	---					
FAM98C	147965	broad.mit.edu	37	19	38899502	38899504	+	In_Frame_Del	DEL	AAG	-	-			TCGA-ET-A3DV-01A-12D-A202-08	TCGA-ET-A3DV-11A-11D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5deeaa45-4c1b-4ab2-a487-93c548838f68	bba5ac91-59b6-4cae-9199-e31d43571f57	g.chr19:38899502_38899504delAAG	uc002oin.1	+	8	1049_1051	c.1030_1032delAAG	c.(1030-1032)AAGdel	p.K349del	FAM98C_uc002oio.1_In_Frame_Del_p.K267del|FAM98C_uc010xtz.1_3'UTR	NM_174905	NP_777565	Q17RN3	FA98C_HUMAN	hypothetical protein LOC147965	349										skin(1)	1	all_cancers(60;3.95e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)			TTGGGGTCGCAAGAAGAAGAAGA	0.606													11	127	---	---	---	---					
Unknown	0	broad.mit.edu	37	22	16909977	16909981	+	IGR	DEL	CAAAA	-	-	rs111736616		TCGA-ET-A3DV-01A-12D-A202-08	TCGA-ET-A3DV-11A-11D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5deeaa45-4c1b-4ab2-a487-93c548838f68	bba5ac91-59b6-4cae-9199-e31d43571f57	g.chr22:16909977_16909981delCAAAA								OR11H1 (460173 upstream) : CCT8L2 (161667 downstream)																							ATGGCTCTGTCAAAATAAACAAAAT	0.322													8	9	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	3276446	3276446	+	IGR	DEL	G	-	-			TCGA-ET-A3DV-01A-12D-A202-08	TCGA-ET-A3DV-11A-11D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5deeaa45-4c1b-4ab2-a487-93c548838f68	bba5ac91-59b6-4cae-9199-e31d43571f57	g.chr5:3276446delG								C5orf38 (520934 upstream) : IRX1 (319722 downstream)																							ggaggaaggagggaggggagg	0.000													2	4	---	---	---	---					
SLA	6503	broad.mit.edu	37	8	134072405	134072408	+	Translation_Start_Site	DEL	TTTC	-	-			TCGA-ET-A3DV-01A-12D-A202-08	TCGA-ET-A3DV-11A-11D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5deeaa45-4c1b-4ab2-a487-93c548838f68	bba5ac91-59b6-4cae-9199-e31d43571f57	g.chr8:134072405_134072408delTTTC	uc003ytz.2	-	3					TG_uc003ytw.2_Intron|TG_uc010mdw.2_Intron|TG_uc011ljb.1_Intron|TG_uc011ljc.1_Intron|SLA_uc011lje.1_Frame_Shift_Del_p.E17fs|SLA_uc011ljf.1_Intron|SLA_uc011ljg.1_Frame_Shift_Del_p.E17fs|SLA_uc010mdy.1_Translation_Start_Site|SLA_uc010mdz.1_Translation_Start_Site|SLA_uc010mea.2_RNA|SLA_uc011ljd.1_Frame_Shift_Del_p.E40fs	NM_001045556	NP_001039021	Q13239	SLAP1_HUMAN	Src-like-adaptor isoform a							endosome	SH3/SH2 adaptor activity			lung(1)|liver(1)	2	all_epithelial(106;3.51e-21)|Lung NSC(106;4.24e-06)|Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0279)|Breast(495;0.037)	BRCA - Breast invasive adenocarcinoma(115;0.000701)			CTGTTTCCCATTTCTTTCTTTTTC	0.578													55	83	---	---	---	---					
