Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
GBP2	2634	broad.mit.edu	37	1	89579760	89579760	+	Missense_Mutation	SNP	A	G	G			TCGA-FY-A3I5-01B-11D-A21Z-08	TCGA-FY-A3I5-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	2ede8763-643f-4e29-ba92-60bc5be02a3e	f61f065c-bf04-454a-a292-a5178665ac29	g.chr1:89579760A>G	uc001dmz.1	-	7	1359	c.1088T>C	c.(1087-1089)ATT>ACT	p.I363T	GBP2_uc001dmy.1_RNA	NM_004120	NP_004111	P32456	GBP2_HUMAN	guanylate binding protein 2,	363					interferon-gamma-mediated signaling pathway|type I interferon-mediated signaling pathway	plasma membrane	GTP binding|GTPase activity			ovary(1)	1		Lung NSC(277;0.0908)		all cancers(265;0.0151)|Epithelial(280;0.0284)		GAAGACTTCAATGGCCTCTCT	0.493000													42	108	---	---	---	---	0	0	0.048971	0	0
ITGA8	8516	broad.mit.edu	37	10	15655758	15655758	+	Missense_Mutation	SNP	G	A	A			TCGA-FY-A3I5-01B-11D-A21Z-08	TCGA-FY-A3I5-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	2ede8763-643f-4e29-ba92-60bc5be02a3e	f61f065c-bf04-454a-a292-a5178665ac29	g.chr10:15655758G>A	uc001ioc.1	-	15	1454	c.1454C>T	c.(1453-1455)CCG>CTG	p.P485L	ITGA8_uc010qcb.1_Missense_Mutation_p.P470L	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	485	Extracellular (Potential).|FG-GAP 7.				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						AGTCACAACCGGTCTTGCTCT	0.463000													3	102	---	---	---	---	0	0	0.004672	0	0
CNNM1	26507	broad.mit.edu	37	10	101120670	101120670	+	Missense_Mutation	SNP	C	T	T			TCGA-FY-A3I5-01B-11D-A21Z-08	TCGA-FY-A3I5-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	2ede8763-643f-4e29-ba92-60bc5be02a3e	f61f065c-bf04-454a-a292-a5178665ac29	g.chr10:101120670C>T	uc001kpp.3	+	3	2085	c.1796C>T	c.(1795-1797)ACG>ATG	p.T599M	CNNM1_uc009xwe.2_Missense_Mutation_p.T599M|CNNM1_uc010qpi.1_Missense_Mutation_p.T599M|CNNM1_uc009xwf.2_Missense_Mutation_p.T599M|CNNM1_uc009xwg.2_Translation_Start_Site	NM_020348	NP_065081	Q9NRU3	CNNM1_HUMAN	cyclin M1	599					ion transport	integral to membrane|plasma membrane					0		Colorectal(252;0.234)		Epithelial(162;6.82e-10)|all cancers(201;5.62e-08)		CTTTCGGACACGGAGATGCGG	0.493000													4	121	---	---	---	---	0	0	0.009096	0	0
EFEMP2	30008	broad.mit.edu	37	11	65636030	65636030	+	Silent	SNP	G	A	A			TCGA-FY-A3I5-01B-11D-A21Z-08	TCGA-FY-A3I5-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	2ede8763-643f-4e29-ba92-60bc5be02a3e	f61f065c-bf04-454a-a292-a5178665ac29	g.chr11:65636030G>A	uc001ofy.3	-	8	992	c.798C>T	c.(796-798)TCC>TCT	p.S266S	EFEMP2_uc001ofz.2_RNA|EFEMP2_uc001oga.2_Silent_p.S266S	NM_016938	NP_058634	O95967	FBLN4_HUMAN	EGF-containing fibulin-like extracellular matrix	266	EGF-like 5; calcium-binding (Potential).				blood coagulation	basement membrane|membrane	calcium ion binding|extracellular matrix structural constituent|protein binding|transmembrane receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(159;0.169)		GGCAGTGGCAGGAGAAACGGC	0.622000													3	64	---	---	---	---	0	0	0.004672	0	0
ZW10	9183	broad.mit.edu	37	11	113631247	113631247	+	Missense_Mutation	SNP	C	A	A			TCGA-FY-A3I5-01B-11D-A21Z-08	TCGA-FY-A3I5-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	2ede8763-643f-4e29-ba92-60bc5be02a3e	f61f065c-bf04-454a-a292-a5178665ac29	g.chr11:113631247C>A	uc001poe.2	-	4	445	c.408G>T	c.(406-408)CAG>CAT	p.Q136H	ZW10_uc009yyv.2_RNA	NM_004724	NP_004715	O43264	ZW10_HUMAN	centromere/kinetochore protein zw10	136	Interaction with RINT1.				cell division|ER to Golgi vesicle-mediated transport|establishment of mitotic spindle orientation|meiosis|mitotic cell cycle checkpoint|mitotic metaphase plate congression|mitotic prometaphase|protein complex assembly|protein localization to kinetochore|protein transport|regulation of exit from mitosis	condensed chromosome kinetochore|cytosol|endoplasmic reticulum membrane|kinetochore microtubule|nucleus|spindle pole	centromeric DNA binding|protein binding			central_nervous_system(1)|skin(1)	2		all_cancers(61;3.84e-16)|all_epithelial(67;1e-09)|Melanoma(852;1.46e-05)|all_hematologic(158;0.000237)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Prostate(24;0.0421)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;2.94e-06)|Epithelial(105;0.000103)|all cancers(92;0.000786)		CTTCCAGACGCTGAGCACCAG	0.323000													81	223	---	---	---	---	7.0969e-38	8.75285e-38	0.048971	1	0
TCHP	84260	broad.mit.edu	37	12	110353299	110353299	+	Missense_Mutation	SNP	C	G	G			TCGA-FY-A3I5-01B-11D-A21Z-08	TCGA-FY-A3I5-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	2ede8763-643f-4e29-ba92-60bc5be02a3e	f61f065c-bf04-454a-a292-a5178665ac29	g.chr12:110353299C>G	uc001tpn.2	+	12	1565	c.1412C>G	c.(1411-1413)GCC>GGC	p.A471G	TCHP_uc001tpo.1_RNA|TCHP_uc001tpp.2_Missense_Mutation_p.A471G	NM_001143852	NP_001137324	Q9BT92	TCHP_HUMAN	trichoplein	471	Glu-rich.|Potential.|Interaction with keratin proteins.				apoptosis|negative regulation of cell growth	apical cortex|centrosome|keratin filament|mitochondrion|plasma membrane	protein binding			skin(1)	1						CTCTCAGATGCCCTGCTGCAG	0.562000													25	21	---	---	---	---	0	0	0.037714	0	0
DAAM1	23002	broad.mit.edu	37	14	59797945	59797945	+	Missense_Mutation	SNP	A	G	G			TCGA-FY-A3I5-01B-11D-A21Z-08	TCGA-FY-A3I5-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	2ede8763-643f-4e29-ba92-60bc5be02a3e	f61f065c-bf04-454a-a292-a5178665ac29	g.chr14:59797945A>G	uc001xdz.1	+	14	1704	c.1579A>G	c.(1579-1581)ATC>GTC	p.I527V	DAAM1_uc001xea.1_Missense_Mutation_p.I527V	NM_014992	NP_055807	Q9Y4D1	DAAM1_HUMAN	dishevelled-associated activator of	527					actin cytoskeleton organization	cytoplasm|plasma membrane	actin binding|Rho GTPase binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.165)		CTGTGCTTCAATCCCAGGTGG	0.502000													17	179	---	---	---	---	0	0	0.028581	0	0
LOC645752	645752	broad.mit.edu	37	15	78208021	78208021	+	Silent	SNP	T	C	C	rs58158543	by1000genomes	TCGA-FY-A3I5-01B-11D-A21Z-08	TCGA-FY-A3I5-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	2ede8763-643f-4e29-ba92-60bc5be02a3e	f61f065c-bf04-454a-a292-a5178665ac29	g.chr15:78208021T>C	uc010bky.2	-	16	1829	c.1065A>G	c.(1063-1065)GAA>GAG	p.E355E	LOC645752_uc010umq.1_Silent_p.E2E|uc002bcw.1_5'Flank|uc002bcx.1_5'Flank	NR_027024				SubName: Full=GOLGA6 protein; Flags: Fragment;												0						TGATGACATCTTCCATCTCCT	0.607000													3	137	---	---	---	---	0	0	0.004672	0	0
RBL2	5934	broad.mit.edu	37	16	53504454	53504454	+	Missense_Mutation	SNP	C	G	G			TCGA-FY-A3I5-01B-11D-A21Z-08	TCGA-FY-A3I5-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	2ede8763-643f-4e29-ba92-60bc5be02a3e	f61f065c-bf04-454a-a292-a5178665ac29	g.chr16:53504454C>G	uc002ehi.3	+	16	2523	c.2405C>G	c.(2404-2406)CCT>CGT	p.P802R	RBL2_uc002ehj.2_Missense_Mutation_p.P512R|RBL2_uc010vgw.1_Intron	NM_005611	NP_005602	Q08999	RBL2_HUMAN	retinoblastoma-like 2 (p130)	802	Spacer.|Pocket; binds E1A.				cell cycle|chromatin modification|regulation of cell cycle|regulation of lipid kinase activity|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(2)|lung(2)|upper_aerodigestive_tract(1)	5						TTGCAAGTCCCTGGTCAAGTG	0.552000													5	105	---	---	---	---	0	0	0.014758	0	0
WDR59	79726	broad.mit.edu	37	16	74990380	74990380	+	Missense_Mutation	SNP	G	A	A			TCGA-FY-A3I5-01B-11D-A21Z-08	TCGA-FY-A3I5-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	2ede8763-643f-4e29-ba92-60bc5be02a3e	f61f065c-bf04-454a-a292-a5178665ac29	g.chr16:74990380G>A	uc002fdh.1	-	3	335	c.233C>T	c.(232-234)GCG>GTG	p.A78V	WDR59_uc002fdi.2_Missense_Mutation_p.A78V|WDR59_uc002fdj.2_Missense_Mutation_p.A78V	NM_030581	NP_085058	Q6PJI9	WDR59_HUMAN	WD repeat domain 59	78	WD 1.									ovary(1)|breast(1)	2						CACCGAAGCCGCAAAATAGTG	0.488000													3	78	---	---	---	---	0	0	0.004672	0	0
RUNDC1	146923	broad.mit.edu	37	17	41141502	41141502	+	Nonsense_Mutation	SNP	G	T	T			TCGA-FY-A3I5-01B-11D-A21Z-08	TCGA-FY-A3I5-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	2ede8763-643f-4e29-ba92-60bc5be02a3e	f61f065c-bf04-454a-a292-a5178665ac29	g.chr17:41141502G>T	uc002ici.1	+	3	814	c.802G>T	c.(802-804)GAG>TAG	p.E268*	RUNDC1_uc010whi.1_Nonsense_Mutation_p.E38*	NM_173079	NP_775102	Q96C34	RUND1_HUMAN	RUN domain containing 1	268											0		Breast(137;0.00499)		BRCA - Breast invasive adenocarcinoma(366;0.161)		ACAGTTGGTTGAGCAACTGAA	0.493000													28	85	---	---	---	---	2.09667e-21	2.50247e-21	0.064281	1	0
ZNF521	25925	broad.mit.edu	37	18	22805082	22805082	+	Missense_Mutation	SNP	C	T	T			TCGA-FY-A3I5-01B-11D-A21Z-08	TCGA-FY-A3I5-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	2ede8763-643f-4e29-ba92-60bc5be02a3e	f61f065c-bf04-454a-a292-a5178665ac29	g.chr18:22805082C>T	uc002kvk.2	-	4	3047	c.2800G>A	c.(2800-2802)GTG>ATG	p.V934M	ZNF521_uc010xbe.1_RNA|ZNF521_uc010dly.2_Missense_Mutation_p.V934M|ZNF521_uc002kvl.2_Missense_Mutation_p.V714M	NM_015461	NP_056276	Q96K83	ZN521_HUMAN	zinc finger protein 521	934	C2H2-type 22.				cell differentiation|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein domain specific binding|zinc ion binding			ovary(4)|large_intestine(2)|lung(1)	7	all_cancers(21;0.0025)|all_epithelial(16;3.62e-05)|Ovarian(20;0.0991)					CGAGAGCACACGTTGCACTTG	0.507000			T	PAX5	ALL								22	106	---	---	---	---	0	0	0.091800	0	0
DLGAP4	22839	broad.mit.edu	37	20	35125295	35125295	+	Silent	SNP	G	A	A			TCGA-FY-A3I5-01B-11D-A21Z-08	TCGA-FY-A3I5-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	2ede8763-643f-4e29-ba92-60bc5be02a3e	f61f065c-bf04-454a-a292-a5178665ac29	g.chr20:35125295G>A	uc002xff.2	+	8	2271	c.1836G>A	c.(1834-1836)CTG>CTA	p.L612L	DLGAP4_uc010zvp.1_Silent_p.L612L|DLGAP4_uc002xfg.2_5'UTR|DLGAP4_uc002xfh.2_Silent_p.L73L|DLGAP4_uc002xfi.2_5'UTR|DLGAP4_uc002xfj.2_5'Flank	NM_014902	NP_055717	Q9Y2H0	DLGP4_HUMAN	disks large-associated protein 4 isoform a	612					cell-cell signaling	membrane	protein binding			skin(2)|ovary(1)	3	Breast(12;0.0192)	Myeloproliferative disorder(115;0.00878)				CGGACAGCCTGGACAGCAGTA	0.632000													3	96	---	---	---	---	0	0	0.004672	0	0
DMC1	11144	broad.mit.edu	37	22	38951410	38951410	+	Silent	SNP	A	G	G			TCGA-FY-A3I5-01B-11D-A21Z-08	TCGA-FY-A3I5-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	2ede8763-643f-4e29-ba92-60bc5be02a3e	f61f065c-bf04-454a-a292-a5178665ac29	g.chr22:38951410A>G	uc003avz.1	-	6	506	c.331T>C	c.(331-333)TTA>CTA	p.L111L	DMC1_uc011anv.1_Silent_p.L111L|DMC1_uc003awa.1_Silent_p.L111L	NM_007068	NP_008999	Q14565	DMC1_HUMAN	DMC1 dosage suppressor of mck1 homolog	111					reciprocal meiotic recombination	condensed nuclear chromosome	ATP binding|DNA binding|DNA-dependent ATPase activity|protein binding			ovary(1)	1	Melanoma(58;0.0286)					CCTCCTAGTAACTTACTGGAA	0.264000								Homologous_recombination					4	106	---	---	---	---	0	0	0.014758	0	0
GTPBP1	9567	broad.mit.edu	37	22	39112749	39112749	+	Missense_Mutation	SNP	G	A	A			TCGA-FY-A3I5-01B-11D-A21Z-08	TCGA-FY-A3I5-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	2ede8763-643f-4e29-ba92-60bc5be02a3e	f61f065c-bf04-454a-a292-a5178665ac29	g.chr22:39112749G>A	uc003awg.2	+	4	732	c.578G>A	c.(577-579)CGC>CAC	p.R193H		NM_004286	NP_004277	O00178	GTPB1_HUMAN	GTP binding protein 1	193					immune response|positive regulation of mRNA catabolic process|signal transduction	cytoplasmic exosome (RNase complex)|cytosol	GTP binding|GTPase activity			ovary(1)	1	Melanoma(58;0.04)					GGCTTTGCCCGCCAGAAACTC	0.557000													3	55	---	---	---	---	0	0	0.004672	0	0
ROBO2	6092	broad.mit.edu	37	3	77623657	77623657	+	Missense_Mutation	SNP	G	A	A			TCGA-FY-A3I5-01B-11D-A21Z-08	TCGA-FY-A3I5-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	2ede8763-643f-4e29-ba92-60bc5be02a3e	f61f065c-bf04-454a-a292-a5178665ac29	g.chr3:77623657G>A	uc003dpy.3	+	14	2622	c.1979G>A	c.(1978-1980)CGC>CAC	p.R660H	ROBO2_uc003dpz.2_Missense_Mutation_p.R664H|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Missense_Mutation_p.R664H	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	660	Fibronectin type-III 2.|Extracellular (Potential).				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		CAGGTTGATCGCCAACCCCAG	0.423000													24	48	---	---	---	---	0	0	0.030593	0	0
ADPRH	141	broad.mit.edu	37	3	119305412	119305412	+	Silent	SNP	A	G	G			TCGA-FY-A3I5-01B-11D-A21Z-08	TCGA-FY-A3I5-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	2ede8763-643f-4e29-ba92-60bc5be02a3e	f61f065c-bf04-454a-a292-a5178665ac29	g.chr3:119305412A>G	uc003ecs.2	+	4	877	c.579A>G	c.(577-579)AAA>AAG	p.K193K	ADPRH_uc010hqv.2_Silent_p.K193K|ADPRH_uc011bjb.1_Silent_p.K86K|ADPRH_uc003ect.2_Silent_p.K193K	NM_001125	NP_001116	P54922	ADPRH_HUMAN	ADP-ribosylarginine hydrolase	193					protein de-ADP-ribosylation		ADP-ribosylarginine hydrolase activity|magnesium ion binding			ovary(1)	1		Lung NSC(201;0.0977)		GBM - Glioblastoma multiforme(114;0.23)		AGTGGGGAAAAGGACTGATGG	0.512000													3	107	---	---	---	---	0	0	0.004672	0	0
VDAC1	7416	broad.mit.edu	37	5	133311612	133311612	+	Missense_Mutation	SNP	G	A	A			TCGA-FY-A3I5-01B-11D-A21Z-08	TCGA-FY-A3I5-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	2ede8763-643f-4e29-ba92-60bc5be02a3e	f61f065c-bf04-454a-a292-a5178665ac29	g.chr5:133311612G>A	uc003kyp.1	-	7	751	c.652C>T	c.(652-654)CGC>TGC	p.R218C	VDAC1_uc003kyq.1_Missense_Mutation_p.R218C|VDAC1_uc003kyr.1_Missense_Mutation_p.R218C	NM_003374	NP_003365	P21796	VDAC1_HUMAN	voltage-dependent anion channel 1	218	Beta stranded.				apoptosis|interspecies interaction between organisms	mitochondrial nucleoid|mitochondrial outer membrane|plasma membrane|pore complex	porin activity|protein binding|voltage-gated anion channel activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.00806)|Kidney(363;0.02)		Dihydroxyaluminium(DB01375)	ATTCCGAAGCGCGTGTTACTG	0.522000													56	215	---	---	---	---	0	0	0.048971	0	0
HOOK3	84376	broad.mit.edu	37	8	42873627	42873627	+	Missense_Mutation	SNP	G	A	A			TCGA-FY-A3I5-01B-11D-A21Z-08	TCGA-FY-A3I5-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	2ede8763-643f-4e29-ba92-60bc5be02a3e	f61f065c-bf04-454a-a292-a5178665ac29	g.chr8:42873627G>A	uc003xpr.2	+	22	2385	c.2143G>A	c.(2143-2145)GCC>ACC	p.A715T		NM_032410	NP_115786	Q86VS8	HOOK3_HUMAN	golgi-associated microtubule-binding protein	715	Required for interaction with MSR1.|Required for association with Golgi.				cytoplasmic microtubule organization|early endosome to late endosome transport|endosome organization|endosome to lysosome transport|Golgi localization|interkinetic nuclear migration|lysosome organization|microtubule anchoring|negative regulation of neurogenesis|protein localization to centrosome|protein transport	cis-Golgi network|FHF complex|microtubule|pericentriolar material	identical protein binding|microtubule binding			ovary(1)|breast(1)	2	Ovarian(28;0.01)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.000105)|Lung NSC(58;0.000419)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.129)	Lung(22;0.048)|LUSC - Lung squamous cell carcinoma(45;0.114)			CGTGCAGCCGGCCACAGCAAG	0.537000			T	RET	papillary thyroid								4	129	---	---	---	---	0	0	0.014758	0	0
EFCAB1	79645	broad.mit.edu	37	8	49643961	49643961	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FY-A3I5-01B-11D-A21Z-08	TCGA-FY-A3I5-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	2ede8763-643f-4e29-ba92-60bc5be02a3e	f61f065c-bf04-454a-a292-a5178665ac29	g.chr8:49643961G>A	uc003xqo.2	-	2	320	c.160C>T	c.(160-162)CGA>TGA	p.R54*	EFCAB1_uc003xqn.3_Intron|EFCAB1_uc011ldj.1_Intron|EFCAB1_uc010lxx.2_Intron|EFCAB1_uc011ldk.1_Intron	NM_024593	NP_078869	Q9HAE3	EFCB1_HUMAN	EF-hand calcium binding domain 1 isoform a	54							calcium ion binding				0		all_epithelial(80;0.0134)|Lung NSC(129;0.0207)|all_lung(136;0.0464)				AGGATGTTTCGAAATGCATTA	0.393000													29	88	---	---	---	---	0	0	0.041601	0	0
GALNT12	79695	broad.mit.edu	37	9	101597558	101597558	+	Silent	SNP	T	C	C			TCGA-FY-A3I5-01B-11D-A21Z-08	TCGA-FY-A3I5-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	2ede8763-643f-4e29-ba92-60bc5be02a3e	f61f065c-bf04-454a-a292-a5178665ac29	g.chr9:101597558T>C	uc004ayz.2	+	5	945	c.945T>C	c.(943-945)TTT>TTC	p.F315F		NM_024642	NP_078918	Q8IXK2	GLT12_HUMAN	N-acetylgalactosaminyltransferase 12	315	Lumenal (Potential).|Catalytic subdomain B.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			upper_aerodigestive_tract(1)|ovary(1)	2		Acute lymphoblastic leukemia(62;0.0559)				GTGGGCTGTTTGCTGTGAGTA	0.393000													75	76	---	---	---	---	0	0	0.048971	0	0
ABCA1	19	broad.mit.edu	37	9	107562200	107562200	+	Missense_Mutation	SNP	G	A	A			TCGA-FY-A3I5-01B-11D-A21Z-08	TCGA-FY-A3I5-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	2ede8763-643f-4e29-ba92-60bc5be02a3e	f61f065c-bf04-454a-a292-a5178665ac29	g.chr9:107562200G>A	uc004bcl.2	-	36	5156	c.4843C>T	c.(4843-4845)CGG>TGG	p.R1615W		NM_005502	NP_005493	O95477	ABCA1_HUMAN	ATP-binding cassette, sub-family A member 1	1615	Extracellular.		R -> Q (associated with reduced plasma HDL cholesterol).		Cdc42 protein signal transduction|cellular lipid metabolic process|cholesterol efflux|cholesterol homeostasis|cholesterol metabolic process|endosome transport|G-protein coupled receptor protein signaling pathway|high-density lipoprotein particle assembly|interleukin-1 beta secretion|intracellular cholesterol transport|lysosome organization|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|phospholipid efflux|phospholipid homeostasis|platelet dense granule organization|positive regulation of cAMP biosynthetic process|reverse cholesterol transport	integral to plasma membrane|membrane fraction|membrane raft|phagocytic vesicle	anion transmembrane transporter activity|apolipoprotein A-I receptor activity|ATP binding|ATPase activity|cholesterol transporter activity|phospholipid transporter activity|small GTPase binding|syntaxin-13 binding			large_intestine(4)|lung(4)|ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	17				OV - Ovarian serous cystadenocarcinoma(323;0.023)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	AGGTTGGCCCGGAGAATGGCA	0.468000													3	121	---	---	---	---	0	0	0.004672	0	0
PHKA1	5255	broad.mit.edu	37	X	71864258	71864258	+	Silent	SNP	G	A	A			TCGA-FY-A3I5-01B-11D-A21Z-08	TCGA-FY-A3I5-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	2ede8763-643f-4e29-ba92-60bc5be02a3e	f61f065c-bf04-454a-a292-a5178665ac29	g.chrX:71864258G>A	uc004eax.3	-	14	1714	c.1413C>T	c.(1411-1413)ATC>ATT	p.I471I	PHKA1_uc004eay.3_Silent_p.I471I|PHKA1_uc011mqi.1_Silent_p.I471I	NM_002637	NP_002628	P46020	KPB1_HUMAN	phosphorylase kinase, alpha 1 (muscle) isoform	471					glucose metabolic process|glycogen catabolic process	cytosol|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(3)|skin(1)	4	Renal(35;0.156)					GTTGTACTCTGATGGGGTATA	0.433000													18	51	---	---	---	---	0	0	0.049695	0	0
Unknown	0	broad.mit.edu	37	X	155252868	155252868	+	Silent	SNP	T	A	A			TCGA-FY-A3I5-01B-11D-A21Z-08	TCGA-FY-A3I5-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	2ede8763-643f-4e29-ba92-60bc5be02a3e	f61f065c-bf04-454a-a292-a5178665ac29	g.chrX:155252868T>A	uc004fnw.1	+	6	1571	c.912T>A	c.(910-912)CCT>CCA	p.P304P	uc004fnx.3_Silent_p.P90P	NM_182905	NP_878908			WAS protein family homolog 1																		TAGCCGAGCCTCTCAAGGCAG	0.632000													4	6	---	---	---	---	0	0	0.014758	0	0
Unknown	0	broad.mit.edu	37	1	17345217	17345217	+	IGR	DEL	T	-	-	rs75557632		TCGA-FY-A3I5-01B-11D-A21Z-08	TCGA-FY-A3I5-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	2ede8763-643f-4e29-ba92-60bc5be02a3e	f61f065c-bf04-454a-a292-a5178665ac29	g.chr1:17345217delT								ATP13A2 (6794 upstream) : SDHB (10 downstream)																							GAACAGGTTCTTTTTTTTTTG	0.393													2	4	---	---	---	---					
R3HDM2	22864	broad.mit.edu	37	12	57674205	57674207	+	In_Frame_Del	DEL	TGC	-	-			TCGA-FY-A3I5-01B-11D-A21Z-08	TCGA-FY-A3I5-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	2ede8763-643f-4e29-ba92-60bc5be02a3e	f61f065c-bf04-454a-a292-a5178665ac29	g.chr12:57674205_57674207delTGC	uc009zpm.1	-	12	1271_1273	c.1236_1238delGCA	c.(1234-1239)CAGCAA>CAA	p.412_413QQ>Q	R3HDM2_uc010srn.1_RNA|R3HDM2_uc001snu.2_In_Frame_Del_p.73_74QQ>Q|R3HDM2_uc001snr.2_In_Frame_Del_p.139_140QQ>Q|R3HDM2_uc001sns.2_In_Frame_Del_p.412_413QQ>Q|R3HDM2_uc001snt.2_In_Frame_Del_p.426_427QQ>Q|R3HDM2_uc009zpn.1_In_Frame_Del_p.35_36QQ>Q	NM_014925	NP_055740	Q9Y2K5	R3HD2_HUMAN	R3H domain containing 2	412_413	Gln-rich.					nucleus	nucleic acid binding			ovary(2)	2						AGCAGGAAGTtgctgctgctgct	0.488													11	172	---	---	---	---					
C14orf174	161394	broad.mit.edu	37	14	77845094	77845094	+	Frame_Shift_Del	DEL	A	-	-			TCGA-FY-A3I5-01B-11D-A21Z-08	TCGA-FY-A3I5-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	2ede8763-643f-4e29-ba92-60bc5be02a3e	f61f065c-bf04-454a-a292-a5178665ac29	g.chr14:77845094delA	uc001xtq.1	+	1	1333	c.1333delA	c.(1333-1335)AAAfs	p.K445fs	TMED8_uc010ast.1_5'Flank|TMED8_uc001xto.1_5'Flank	NM_001010860	NP_001010860	Q9P1V8	SAM15_HUMAN	hypothetical protein LOC161394	445											0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0278)		CCGTGAGCCTAAAAGAGGAAA	0.383													35	40	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	51834302	51834303	+	IGR	INS	-	T	T			TCGA-FY-A3I5-01B-11D-A21Z-08	TCGA-FY-A3I5-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	2ede8763-643f-4e29-ba92-60bc5be02a3e	f61f065c-bf04-454a-a292-a5178665ac29	g.chr17:51834302_51834303insT								None (None upstream) : KIF2B (65936 downstream)																							TATTTTTGCAATTTTTTTTTTC	0.327													2	4	---	---	---	---					
C20orf85	128602	broad.mit.edu	37	20	56735727	56735727	+	Frame_Shift_Del	DEL	C	-	-			TCGA-FY-A3I5-01B-11D-A21Z-08	TCGA-FY-A3I5-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	2ede8763-643f-4e29-ba92-60bc5be02a3e	f61f065c-bf04-454a-a292-a5178665ac29	g.chr20:56735727delC	uc002xyv.2	+	4	301	c.263delC	c.(262-264)TCCfs	p.S88fs		NM_178456	NP_848551	Q9H1P6	CT085_HUMAN	hypothetical protein LOC128602	88										ovary(1)	1	all_epithelial(3;5.99e-14)|Lung NSC(12;0.000152)|all_lung(29;0.000518)|Melanoma(10;0.118)		BRCA - Breast invasive adenocarcinoma(13;5.53e-12)|Epithelial(14;7.42e-08)|all cancers(14;7.19e-07)			GTCTTTCCATCCCCCCCAGTC	0.582													7	83	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	43884432	43884432	+	IGR	DEL	G	-	-			TCGA-FY-A3I5-01B-11D-A21Z-08	TCGA-FY-A3I5-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	2ede8763-643f-4e29-ba92-60bc5be02a3e	f61f065c-bf04-454a-a292-a5178665ac29	g.chr21:43884432delG								UBASH3A (16660 upstream) : RSPH1 (8167 downstream)																							GGTCGGGCGAGGGTACCACGT	0.612													2	4	---	---	---	---					
SYN2	6854	broad.mit.edu	37	3	12046124	12046126	+	In_Frame_Del	DEL	AGC	-	-	rs76272937		TCGA-FY-A3I5-01B-11D-A21Z-08	TCGA-FY-A3I5-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	2ede8763-643f-4e29-ba92-60bc5be02a3e	f61f065c-bf04-454a-a292-a5178665ac29	g.chr3:12046124_12046126delAGC	uc003bwm.2	+	1	263_265	c.99_101delAGC	c.(97-102)CAACCG>CAG	p.P40del	SYN2_uc003bwl.1_In_Frame_Del_p.P40del	NM_133625	NP_598328	Q92777	SYN2_HUMAN	synapsin II isoform IIa	40					neurotransmitter secretion	synaptic vesicle	ATP binding|ligase activity			ovary(1)|central_nervous_system(1)	2						AGCCCCAGCAAGCGCCGAcgccg	0.345													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	12457353	12457356	+	IGR	DEL	CTCA	-	-	rs117549843	by1000genomes	TCGA-FY-A3I5-01B-11D-A21Z-08	TCGA-FY-A3I5-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	2ede8763-643f-4e29-ba92-60bc5be02a3e	f61f065c-bf04-454a-a292-a5178665ac29	g.chr6:12457353_12457356delCTCA								EDN1 (159927 upstream) : PHACTR1 (259532 downstream)																							cTCTCTCTCTCTcacacacacaca	0.304													2	4	---	---	---	---					
RIMS1	22999	broad.mit.edu	37	6	72596571	72596573	+	5'Flank	DEL	CTG	-	-			TCGA-FY-A3I5-01B-11D-A21Z-08	TCGA-FY-A3I5-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	2ede8763-643f-4e29-ba92-60bc5be02a3e	f61f065c-bf04-454a-a292-a5178665ac29	g.chr6:72596571_72596573delCTG	uc003pga.2	+							NM_014989	NP_055804	Q86UR5	RIMS1_HUMAN	regulating synaptic membrane exocytosis 1						calcium ion-dependent exocytosis|cellular membrane fusion|glutamate secretion|intracellular protein transport|protein complex assembly|regulated secretory pathway|response to stimulus|synaptic vesicle exocytosis|visual perception	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(7)|pancreas(2)|breast(1)	10		all_epithelial(107;0.179)|all_hematologic(105;0.212)				CTCCCCGGCTctgctgctgctgc	0.433													4	3	---	---	---	---					
GAGE10	643832	broad.mit.edu	37	X	49158062	49158062	+	5'Flank	DEL	T	-	-			TCGA-FY-A3I5-01B-11D-A21Z-08	TCGA-FY-A3I5-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	2ede8763-643f-4e29-ba92-60bc5be02a3e	f61f065c-bf04-454a-a292-a5178665ac29	g.chrX:49158062delT	uc010nir.1	+							NM_001098413	NP_001091883	A6NGK3	GAG10_HUMAN	G antigen 10												0	Ovarian(276;0.236)					acatcattccttttttttttt	0.000													3	6	---	---	---	---					
