Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
LCE1E	353135	broad.mit.edu	37	1	152760020	152760020	+	Missense_Mutation	SNP	A	G	G			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr1:152760020A>G	uc001fan.2	+	2	298	c.245A>G	c.(244-246)CAC>CGC	p.H82R		NM_178353	NP_848130	Q5T753	LCE1E_HUMAN	late cornified envelope 1E	82	Cys-rich.				keratinization						0	Lung NSC(65;3.97e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			CACCACAGGCACCACAGGTCC	0.697000													5	119	---	---	---	---	0	0	0.000602	0	0
ATP2B4	493	broad.mit.edu	37	1	203680123	203680123	+	Missense_Mutation	SNP	A	G	G			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr1:203680123A>G	uc001gzw.2	+	12	2802	c.1918A>G	c.(1918-1920)ATA>GTA	p.I640V	ATP2B4_uc001gzv.2_Missense_Mutation_p.I640V|ATP2B4_uc009xaq.2_Missense_Mutation_p.I640V	NM_001684	NP_001675	P23634	AT2B4_HUMAN	plasma membrane calcium ATPase 4 isoform 4b	640	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|protein binding			ovary(2)|skin(1)	3	all_cancers(21;0.071)|all_epithelial(62;0.228)		BRCA - Breast invasive adenocarcinoma(75;0.109)			GACTATCTGCATAGCTTACCG	0.532000													42	82	---	---	---	---	0	0	0.014410	0	0
LDHA	3939	broad.mit.edu	37	11	18427040	18427040	+	Missense_Mutation	SNP	T	C	C			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr11:18427040T>C	uc001mok.3	+	7	1027	c.755T>C	c.(754-756)ATT>ACT	p.I252T	LDHA_uc010rdc.1_Missense_Mutation_p.I194T|LDHA_uc009yhn.2_Missense_Mutation_p.I251T|LDHA_uc009yho.2_Missense_Mutation_p.I79T|LDHA_uc001mol.3_Intron|LDHA_uc010rdd.1_Missense_Mutation_p.I281T	NM_005566	NP_005557	P00338	LDHA_HUMAN	lactate dehydrogenase A isoform 1	252					glycolysis|pyruvate metabolic process	cytosol	L-lactate dehydrogenase activity|protein binding			central_nervous_system(3)	3					NADH(DB00157)	TCCTGGGCTATTGGACTCTCT	0.443000													4	72	---	---	---	---	0	0	0.000602	0	0
CCDC15	80071	broad.mit.edu	37	11	124857495	124857495	+	Missense_Mutation	SNP	A	C	C	rs113451248		TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr11:124857495A>C	uc001qbm.3	+	8	1632	c.1373A>C	c.(1372-1374)CAC>CCC	p.H458P		NM_025004	NP_079280	Q0P6D6	CCD15_HUMAN	coiled-coil domain containing 15	458						centrosome				ovary(1)|central_nervous_system(1)	2	all_hematologic(175;0.215)	Breast(109;0.00222)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.68e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0413)		CATGTTCTCCACAAAGACCAA	0.418000													3	53	---	---	---	---	0	0	0.004672	0	0
TROAP	10024	broad.mit.edu	37	12	49724403	49724403	+	Missense_Mutation	SNP	A	G	G			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr12:49724403A>G	uc001rtx.3	+	13	1942	c.1775A>G	c.(1774-1776)TAC>TGC	p.Y592C	TROAP_uc009zlh.2_Missense_Mutation_p.Y592C|TROAP_uc001rty.2_Intron	NM_005480	NP_005471	Q12815	TROAP_HUMAN	tastin isoform 1	592	Cys-rich.|4 X 33 AA approximate tandem repeats.|3.				cell adhesion	cytoplasm				ovary(1)	1						CTAGAGTCCTACTGTAGGATT	0.617000													3	71	---	---	---	---	0	0	0.004672	0	0
TSFM	10102	broad.mit.edu	37	12	58176601	58176601	+	Missense_Mutation	SNP	C	T	T			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr12:58176601C>T	uc001sqi.2	+	1	66	c.17C>T	c.(16-18)TCG>TTG	p.S6L	TSFM_uc010sse.1_5'UTR|TSFM_uc001sqh.2_Missense_Mutation_p.S6L|TSFM_uc010ssf.1_Missense_Mutation_p.S6L	NM_005726	NP_005717	P43897	EFTS_HUMAN	Ts translation elongation factor, mitochondrial	6					regulation of transcription elongation, DNA-dependent	mitochondrion|nucleus	translation elongation factor activity				0	all_cancers(7;6.31e-80)|Glioma(12;6.95e-05)|all_neural(12;0.00016)|Melanoma(17;0.122)					CTGCTGCGGTCGCTGCGCGTG	0.652000											OREG0021954	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	9	---	---	---	---	0	0	0.001168	0	0
PRKD1	5587	broad.mit.edu	37	14	30105538	30105538	+	Missense_Mutation	SNP	T	C	C			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr14:30105538T>C	uc001wqh.2	-	7	1329	c.1148A>G	c.(1147-1149)CAA>CGA	p.Q383R		NM_002742	NP_002733	Q15139	KPCD1_HUMAN	protein kinase D1	383					cell proliferation|intracellular signal transduction|sphingolipid metabolic process	cytosol|integral to plasma membrane	ATP binding|metal ion binding|protein binding|protein kinase C activity			lung(3)|large_intestine(2)|ovary(2)|skin(1)	8	Hepatocellular(127;0.0604)		LUAD - Lung adenocarcinoma(48;0.00527)|Lung(238;0.0252)	GBM - Glioblastoma multiforme(265;0.00888)		GTCTGGATCTTGCATCTCGCC	0.537000													102	120	---	---	---	---	0	0	0.014410	0	0
SFRS5	6430	broad.mit.edu	37	14	70237718	70237718	+	Silent	SNP	T	G	G			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr14:70237718T>G	uc001xll.2	+	8	1898	c.447T>G	c.(445-447)GTT>GTG	p.V149V	SFRS5_uc001xlm.2_RNA|SFRS5_uc001xlo.2_Silent_p.V149V|SFRS5_uc001xlp.2_Silent_p.V149V|SFRS5_uc001xlq.2_Silent_p.V146V	NM_006925	NP_008856	Q13243	SRSF5_HUMAN	splicing factor, arginine/serine-rich 5	149	RRM 2.				mRNA 3'-end processing|mRNA export from nucleus|mRNA splice site selection|termination of RNA polymerase II transcription	nuclear speck	nucleotide binding|protein binding|RNA binding				0				all cancers(60;0.00144)|BRCA - Breast invasive adenocarcinoma(234;0.0132)|OV - Ovarian serous cystadenocarcinoma(108;0.0154)		TTAGGGTGGTTGAGTTTGCCT	0.358000													6	24	---	---	---	---	0	0	0.006214	0	0
CATSPERB	79820	broad.mit.edu	37	14	92088170	92088170	+	Missense_Mutation	SNP	G	A	A			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr14:92088170G>A	uc001xzs.1	-	19	2182	c.2042C>T	c.(2041-2043)GCT>GTT	p.A681V	CATSPERB_uc010aub.1_Missense_Mutation_p.A203V	NM_024764	NP_079040	Q9H7T0	CTSRB_HUMAN	cation channel, sperm-associated, beta	681					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				breast(2)|skin(2)|ovary(1)	5		all_cancers(154;0.0663)|all_epithelial(191;0.236)				AGGCATGGTAGCAATGGCTAA	0.393000													3	47	---	---	---	---	0	0	0.004672	0	0
AHNAK2	113146	broad.mit.edu	37	14	105418145	105418145	+	Missense_Mutation	SNP	G	A	A			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr14:105418145G>A	uc010axc.1	-	7	3763	c.3643C>T	c.(3643-3645)CCC>TCC	p.P1215S	AHNAK2_uc001ypx.2_Missense_Mutation_p.P1115S	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	1215						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			GCGGAAGGGGGCTGAATGCTG	0.647000													2	0	---	---	---	---	0	0	0.001168	0	0
ARIH1	25820	broad.mit.edu	37	15	72767235	72767235	+	Silent	SNP	C	T	T			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr15:72767235C>T	uc002aut.3	+	1	569	c.255C>T	c.(253-255)GGC>GGT	p.G85G		NM_005744	NP_005735	Q9Y4X5	ARI1_HUMAN	ariadne ubiquitin-conjugating enzyme E2 binding	85	Gly-rich.				ubiquitin-dependent protein catabolic process	cytoplasm|ubiquitin ligase complex	ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding				0						gcggcggcggcggtggtggtg	0.547000													3	18	---	---	---	---	0	0	0.009096	0	0
Unknown	0	broad.mit.edu	37	15	102304695	102304695	+	5'Flank	SNP	G	C	C			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr15:102304695G>C	uc002cbx.1	-						uc002ccc.1_5'Flank|uc002ccd.2_RNA|uc002ccf.3_5'Flank|uc002ccg.3_5'Flank|uc010uth.1_5'Flank|uc002cci.2_5'Flank|uc002ccj.2_5'Flank|uc002cck.2_5'Flank|uc002ccl.1_5'Flank|uc002ccm.1_5'Flank					DQ582460																		CTGCTTCTCAGAGCTGCTGTC	0.627000													3	10	---	---	---	---	0	0	0.000602	0	0
MYH2	4620	broad.mit.edu	37	17	10432293	10432293	+	Missense_Mutation	SNP	C	A	A			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr17:10432293C>A	uc010coi.2	-	27	3586	c.3458G>T	c.(3457-3459)AGC>ATC	p.S1153I	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.S1153I|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1153	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						CAGCCTCTCGCTGATCTCCTC	0.617000													90	96	---	---	---	---	1.33835e-49	1.71011e-49	0.014410	1	0
LOC644669	644669	broad.mit.edu	37	18	15323276	15323276	+	RNA	SNP	A	T	T			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr18:15323276A>T	uc002ktd.1	-	3		c.183T>A				NR_027417				Homo sapiens cDNA FLJ40312 fis, clone TESTI2029880.												0						ATCAACTGCAATTGCATTTGC	0.308000													3	18	---	---	---	---	0	0	0.009096	0	0
PTPRS	5802	broad.mit.edu	37	19	5206842	5206842	+	Missense_Mutation	SNP	C	G	G			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr19:5206842C>G	uc002mbv.2	-	38	6024	c.5790G>C	c.(5788-5790)CAG>CAC	p.Q1930H	PTPRS_uc002mbu.1_Intron|PTPRS_uc010xin.1_Missense_Mutation_p.Q1472H|PTPRS_uc002mbw.2_Missense_Mutation_p.Q1892H|PTPRS_uc002mbx.2_Missense_Mutation_p.Q1487H|PTPRS_uc002mby.2_Missense_Mutation_p.Q1483H	NM_002850	NP_002841	Q13332	PTPRS_HUMAN	protein tyrosine phosphatase, receptor type,	1930	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				cell adhesion	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(2)|ovary(1)|central_nervous_system(1)	4				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0321)|Lung(535;0.182)		GGTAACAGAACTGGTACTCAT	0.612000													7	99	---	---	---	---	0	0	0.006214	0	0
ANGPTL6	83854	broad.mit.edu	37	19	10204121	10204121	+	Missense_Mutation	SNP	G	A	A			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr19:10204121G>A	uc002mmx.1	-	5	1244	c.1126C>T	c.(1126-1128)CGG>TGG	p.R376W	ANGPTL6_uc002mmy.1_Missense_Mutation_p.R376W	NM_031917	NP_114123	Q8NI99	ANGL6_HUMAN	angiopoietin-like 6 precursor	376	Fibrinogen C-terminal.				angiogenesis|cell differentiation|signal transduction	extracellular space	receptor binding				0			OV - Ovarian serous cystadenocarcinoma(20;3.58e-08)|Epithelial(33;2.5e-05)|all cancers(31;5.96e-05)			TGGCCAAGCCGCAGGCGGTAG	0.597000													3	44	---	---	---	---	0	0	0.009096	0	0
CKAP2L	150468	broad.mit.edu	37	2	113513632	113513632	+	Missense_Mutation	SNP	G	A	A			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr2:113513632G>A	uc002tie.2	-	4	1395	c.1316C>T	c.(1315-1317)ACT>ATT	p.T439I	CKAP2L_uc002tif.2_Missense_Mutation_p.T28I|CKAP2L_uc010yxp.1_Missense_Mutation_p.T274I|CKAP2L_uc010yxq.1_Missense_Mutation_p.T274I	NM_152515	NP_689728	Q8IYA6	CKP2L_HUMAN	cytoskeleton associated protein 2-like	439						centrosome					0						ATCAGCTTGAGTTTTGGGAGC	0.408000													62	70	---	---	---	---	0	0	0.014410	0	0
CCDC108	255101	broad.mit.edu	37	2	219886587	219886587	+	Silent	SNP	G	A	A			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr2:219886587G>A	uc002vjl.1	-	18	3129	c.3045C>T	c.(3043-3045)GTC>GTT	p.V1015V	CCDC108_uc002vjm.3_5'Flank	NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	1015						integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CATTCAGGAGGACAAGGAACC	0.607000													66	137	---	---	---	---	0	0	0.014410	0	0
LOC96610	96610	broad.mit.edu	37	22	22664186	22664186	+	RNA	SNP	A	G	G			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr22:22664186A>G	uc011aim.1	+	30		c.2043A>G			LOC96610_uc011aiq.1_RNA					Parts of antibodies, mostly variable regions.												0						CAGATCAAGAAAGCACTCTGA	0.498000													4	100	---	---	---	---	0	0	0.009096	0	0
LTF	4057	broad.mit.edu	37	3	46484938	46484938	+	Missense_Mutation	SNP	G	A	A			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr3:46484938G>A	uc003cpq.2	-	13	1687	c.1649C>T	c.(1648-1650)GCT>GTT	p.A550V	LTF_uc003fzr.2_Missense_Mutation_p.A506V|LTF_uc010hjh.2_Missense_Mutation_p.A548V|LTF_uc003cpr.2_Missense_Mutation_p.A537V	NM_002343	NP_002334	P02788	TRFL_HUMAN	lactotransferrin precursor	550	Transferrin-like 2.				cellular iron ion homeostasis|defense response to bacterium|humoral immune response|iron ion transport	extracellular region|stored secretory granule	ferric iron binding|heparin binding|protein binding|serine-type endopeptidase activity			central_nervous_system(2)|ovary(1)|lung(1)	4				all cancers(1;7.55e-14)|GBM - Glioblastoma multiforme(1;2.1e-09)|Epithelial(1;9.25e-07)|Colorectal(1;3.81e-05)|BRCA - Breast invasive adenocarcinoma(193;0.00129)|COAD - Colon adenocarcinoma(1;0.00308)|KIRC - Kidney renal clear cell carcinoma(197;0.0205)|Kidney(197;0.0242)|OV - Ovarian serous cystadenocarcinoma(275;0.089)	Pefloxacin(DB00487)	TCACCGGAAAGCCCCAGTGTA	0.532000													81	108	---	---	---	---	0	0	0.014410	0	0
MAP4	4134	broad.mit.edu	37	3	47958144	47958144	+	Silent	SNP	A	G	G			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr3:47958144A>G	uc003csb.2	-	7	1699	c.1173T>C	c.(1171-1173)GCT>GCC	p.A391A	MAP4_uc003csc.3_Silent_p.A391A|MAP4_uc011bbf.1_Silent_p.A368A|MAP4_uc003csf.3_Silent_p.A408A	NM_002375	NP_002366	P27816	MAP4_HUMAN	microtubule-associated protein 4 isoform 1	391	17 X 14 AA tandem repeats.|26 residues 2.				negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000721)|KIRC - Kidney renal clear cell carcinoma(197;0.00641)|Kidney(197;0.00736)		CCTTGGAAGGAGCCAAGTCCA	0.443000													3	98	---	---	---	---	0	0	0.004672	0	0
MAP4	4134	broad.mit.edu	37	3	47958147	47958147	+	Silent	SNP	C	T	T			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr3:47958147C>T	uc003csb.2	-	7	1696	c.1170G>A	c.(1168-1170)TTG>TTA	p.L390L	MAP4_uc003csc.3_Silent_p.L390L|MAP4_uc011bbf.1_Silent_p.L367L|MAP4_uc003csf.3_Silent_p.L407L	NM_002375	NP_002366	P27816	MAP4_HUMAN	microtubule-associated protein 4 isoform 1	390	17 X 14 AA tandem repeats.|26 residues 2.				negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000721)|KIRC - Kidney renal clear cell carcinoma(197;0.00641)|Kidney(197;0.00736)		TGGAAGGAGCCAAGTCCATTT	0.448000													3	93	---	---	---	---	0	0	0.004672	0	0
ALCAM	214	broad.mit.edu	37	3	105252457	105252457	+	Missense_Mutation	SNP	G	A	A			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr3:105252457G>A	uc003dvx.2	+	5	1010	c.470G>A	c.(469-471)TGC>TAC	p.C157Y	ALCAM_uc003dvw.1_Missense_Mutation_p.C157Y|ALCAM_uc003dvy.2_Missense_Mutation_p.C157Y|ALCAM_uc011bhh.1_Missense_Mutation_p.C106Y|ALCAM_uc010hpp.2_5'UTR	NM_001627	NP_001618	Q13740	CD166_HUMAN	activated leukocyte cell adhesion molecule	157	Extracellular (Potential).|Ig-like V-type 2.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(2)|breast(1)	3						TTGGGTGACTGCATTTCAGAA	0.443000													45	49	---	---	---	---	0	0	0.014410	0	0
TRIO	7204	broad.mit.edu	37	5	14297305	14297305	+	Missense_Mutation	SNP	C	T	T			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr5:14297305C>T	uc003jff.2	+	7	1307	c.1301C>T	c.(1300-1302)GCG>GTG	p.A434V	TRIO_uc003jfg.2_RNA|TRIO_uc011cna.1_Missense_Mutation_p.A385V|TRIO_uc003jfh.1_Missense_Mutation_p.A83V	NM_007118	NP_009049	O75962	TRIO_HUMAN	triple functional domain (PTPRF interacting)	434					apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine phosphatase signaling pathway	cytosol	ATP binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			skin(4)|central_nervous_system(3)|ovary(3)|large_intestine(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|kidney(1)	18	Lung NSC(4;0.000742)					AAGGCGTTTGCGGCAGCCCTG	0.602000													3	46	---	---	---	---	0	0	0.004672	0	0
PRDM9	56979	broad.mit.edu	37	5	23527167	23527167	+	Missense_Mutation	SNP	G	C	C	rs112679149		TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr5:23527167G>C	uc003jgo.2	+	11	2152	c.1970G>C	c.(1969-1971)AGA>ACA	p.R657T		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	657	C2H2-type 6.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						CACCAGAGGAGACACACAGGG	0.607000										HNSCC(3;0.000094)			3	91	---	---	---	---	0	0	0.009096	0	0
LOC100133050	100133050	broad.mit.edu	37	5	99715528	99715528	+	RNA	SNP	C	T	T			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr5:99715528C>T	uc011cuw.1	-	4		c.382G>A				NR_027503				Homo sapiens glucuronidase, beta pseudogene (LOC100133050), non-coding RNA.												0						AGCGGACAGTCGAAGCCCTTC	0.607000													4	16	---	---	---	---	0	0	0.009096	0	0
ZNF354A	6940	broad.mit.edu	37	5	178152399	178152399	+	Silent	SNP	G	A	A	rs142721313	byFrequency	TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr5:178152399G>A	uc003mjj.2	-	4	432	c.234C>T	c.(232-234)GAC>GAT	p.D78D		NM_005649	NP_005640	O60765	Z354A_HUMAN	zinc finger protein 354A	78	KRAB.				regulation of transcription from RNA polymerase II promoter|sensory perception of sound|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(1)	3	all_cancers(89;0.000536)|Renal(175;0.000159)|all_epithelial(37;0.000221)|Lung NSC(126;0.00308)|all_lung(126;0.00536)	all_cancers(40;0.0452)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.185)		CGCCAGAACCGTCTTTCTCCA	0.527000													6	147	---	---	---	---	0	0	0.004482	0	0
ZNF713	349075	broad.mit.edu	37	7	56006963	56006963	+	Missense_Mutation	SNP	G	A	A			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr7:56006963G>A	uc003trc.1	+	4	595	c.557G>A	c.(556-558)AGA>AAA	p.R186K	ZNF713_uc003tra.1_Missense_Mutation_p.R199K|MRPS17_uc003trb.2_Intron	NM_182633	NP_872439	Q8N859	ZN713_HUMAN	zinc finger protein 713	186					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			ATGCAGCAGAGAATTCCTTCC	0.368000													13	28	---	---	---	---	0	0	0.003163	0	0
THAP5	168451	broad.mit.edu	37	7	108204990	108204990	+	Missense_Mutation	SNP	G	A	A			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr7:108204990G>A	uc003vfm.2	-	3	987	c.833C>T	c.(832-834)GCT>GTT	p.A278V	THAP5_uc003vfl.2_Missense_Mutation_p.A236V	NM_001130475	NP_001123947	Q7Z6K1	THAP5_HUMAN	THAP domain containing 5 isoform 1	278					cell cycle|negative regulation of cell cycle	nucleus	DNA binding|metal ion binding|protease binding				0						AGAATTTTCAGCAGGTACAAA	0.328000													3	33	---	---	---	---	0	0	0.004672	0	0
PLP1	5354	broad.mit.edu	37	X	103041545	103041545	+	Missense_Mutation	SNP	G	A	A			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chrX:103041545G>A	uc010nov.2	+	4	623	c.343G>A	c.(343-345)GCA>ACA	p.A115T	RAB9B_uc004eli.1_Intron|PLP1_uc004elk.2_Missense_Mutation_p.A115T|PLP1_uc004elj.2_Missense_Mutation_p.A115T|PLP1_uc011msf.1_Missense_Mutation_p.A60T|PLP1_uc010now.1_Missense_Mutation_p.A119T|PLP1_uc010nox.2_Missense_Mutation_p.A69T	NM_001128834	NP_001122306	P60201	MYPR_HUMAN	proteolipid protein 1 isoform 1	115	Cytoplasmic (Probable).				cell death|synaptic transmission	integral to membrane				ovary(1)	1						GGGCCTGAGCGCAACGGTAAC	0.582000													4	171	---	---	---	---	0	0	0.009096	0	0
Unknown	0	broad.mit.edu	37	1	5019964	5019968	+	IGR	DEL	GAAGA	-	-			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr1:5019964_5019968delGAAGA								AJAP1 (176114 upstream) : NPHP4 (902902 downstream)																							agggaagggggaagagaagagaagg	0.063													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	48992198	48992200	+	IGR	DEL	AGG	-	-			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr1:48992198_48992200delAGG								SPATA6 (54353 upstream) : AGBL4 (6327 downstream)																							ctgcagcggcaggaggaggagga	0.015													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	81788176	81788176	+	IGR	DEL	A	-	-	rs35380147		TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr10:81788176delA								MBL1P (77393 upstream) : LOC219347 (17815 downstream)																							AGCTGTGCATATCTGGACTCC	0.443													9	9	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	125014907	125014907	+	IGR	DEL	T	-	-			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr10:125014907delT								BUB3 (90021 upstream) : GPR26 (410964 downstream)																							atcaccatcatcacaccacca	0.000													2	4	---	---	---	---					
TENC1	23371	broad.mit.edu	37	12	53440933	53440934	+	5'Flank	INS	-	GGAGGA	GGAGGA			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr12:53440933_53440934insGGAGGA	uc001sbp.2	+						uc001sbj.1_5'Flank|uc001sbk.1_Intron|TENC1_uc001sbl.2_Intron|TENC1_uc001sbm.2_5'Flank|TENC1_uc001sbn.2_5'Flank|TENC1_uc001sbo.1_5'Flank	NM_170754	NP_736610	Q63HR2	TENC1_HUMAN	tensin like C1 domain containing phosphatase						intracellular signal transduction|negative regulation of cell proliferation	focal adhesion	metal ion binding|phosphoprotein phosphatase activity|protein binding			ovary(1)|pancreas(1)	2						ggagccgggagggaggaggagg	0.134													2	4	---	---	---	---					
ATF7	11016	broad.mit.edu	37	12	53994854	53994856	+	5'Flank	DEL	AAA	-	-			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr12:53994854_53994856delAAA	uc001sdy.2	-						ATF7_uc010sok.1_Intron|ATF7_uc001sdz.2_Intron|ATF7_uc010sol.1_Intron|ATF7_uc001sea.3_Intron|ATF7_uc001seb.3_Intron	NM_001130059	NP_001123531	P17544	ATF7_HUMAN	activating transcription factor 7 isoform 1						interspecies interaction between organisms	cytoplasm|nuclear periphery|nucleoplasm	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|lung(1)	2						ATGCTGGAGCAAAAAAAAAAAAA	0.419													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	56901970	56901972	+	IGR	DEL	TCC	-	-			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr12:56901970_56901972delTCC								GLS2 (19789 upstream) : RBMS2 (13637 downstream)																							ctcctcctcttcctcctcctcct	0.039													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	114121986	114121988	+	IGR	DEL	GCA	-	-			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr12:114121986_114121988delGCA								LHX5 (212109 upstream) : RBM19 (132555 downstream)																							CAAGGACGTTgcagcagcagcag	0.542													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	13	114991063	114991063	+	IGR	DEL	G	-	-			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr13:114991063delG								RASA3 (92968 upstream) : CDC16 (9299 downstream)																							gaaagggggaggggaggagaa	0.020													2	4	---	---	---	---					
KLHL25	64410	broad.mit.edu	37	15	86338319	86338319	+	5'Flank	DEL	G	-	-			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr15:86338319delG	uc002bly.2	-							NM_022480	NP_071925	Q9H0H3	ENC2_HUMAN	BTB/POZ KELCH domain protein							cytoplasm				ovary(2)	2						ggggcggggagggggggggac	0.473													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	1164108	1164109	+	IGR	INS	-	C	C			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr16:1164108_1164109insC								C1QTNF8 (17864 upstream) : CACNA1H (39132 downstream)																							caccaccctcactccactcacc	0.030													5	8	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	84677022	84677023	+	IGR	DEL	CA	-	-			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr16:84677022_84677023delCA								COTL1 (25353 upstream) : KLHL36 (5108 downstream)																							ctcctcctcccagcctcctccc	0.450													2	4	---	---	---	---					
CA10	56934	broad.mit.edu	37	17	50236292	50236294	+	5'Flank	DEL	GAG	-	-	rs78051960	by1000genomes	TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr17:50236292_50236294delGAG	uc002itw.3	-						CA10_uc002itv.3_5'Flank|CA10_uc002itx.3_Intron|CA10_uc002ity.3_Intron|CA10_uc002itz.2_Intron	NM_020178	NP_064563	Q9NS85	CAH10_HUMAN	carbonic anhydrase X						brain development					ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(22;4.74e-06)			GCGCGGCCATGAGGAGGAGGAGG	0.778													2	4	---	---	---	---					
LAMA1	284217	broad.mit.edu	37	18	7117881	7117890	+	5'Flank	DEL	CCCGCCCCGT	-	-	rs36201812		TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr18:7117881_7117890delCCCGCCCCGT	uc002knm.2	-						LAMA1_uc010wzj.1_5'Flank	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor						axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TGcgccccgccccgccccgtcccgccccgG	0.690													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	18	52699137	52699139	+	IGR	DEL	TCC	-	-	rs62092375		TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr18:52699137_52699139delTCC								CCDC68 (72398 upstream) : TCF4 (190423 downstream)																							cttctgctcttcctcctcctcct	0.340													2	4	---	---	---	---					
THEG	51298	broad.mit.edu	37	19	376931	376932	+	5'Flank	INS	-	C	C			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr19:376931_376932insC	uc002lol.2	-						THEG_uc002lom.2_5'Flank	NM_016585	NP_057669	Q9P2T0	THEG_HUMAN	Theg homolog isoform 1						cell differentiation|chaperone-mediated protein complex assembly|multicellular organismal development|spermatogenesis	nucleus	protein binding			ovary(1)	1		all_cancers(10;1.13e-36)|all_epithelial(18;1.46e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.1e-06)|all_lung(49;1.55e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ccccctctgtgccccacccagc	0.015													2	4	---	---	---	---					
KANK3	256949	broad.mit.edu	37	19	8398950	8398961	+	In_Frame_Del	DEL	TCGCTGTCGCCA	-	-	rs111751275		TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr19:8398950_8398961delTCGCTGTCGCCA	uc010dwa.2	-	5	1533_1544	c.1467_1478delTGGCGACAGCGA	c.(1465-1479)GATGGCGACAGCGAG>GAG	p.DGDS489del	KANK3_uc002mjp.1_In_Frame_Del_p.MATA1del	NM_198471	NP_940873	Q6NY19	KANK3_HUMAN	ankyrin repeat domain 47	489_492											0						GCCACCGTTCTCGCTGTCGCCATCGCTGTCGC	0.693													3	6	---	---	---	---					
FBXL12	54850	broad.mit.edu	37	19	9931194	9931194	+	5'Flank	DEL	A	-	-			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr19:9931194delA	uc002mme.2	-						FBXL12_uc002mmd.2_5'Flank|FBXL12_uc002mmf.2_5'Flank|FBXL12_uc002mmg.2_5'Flank|FBXL12_uc002mmh.2_Intron	NM_017703	NP_060173	Q9NXK8	FXL12_HUMAN	F-box and leucine-rich repeat protein 12								protein binding			lung(1)|kidney(1)	2						CTTCCTGTCCAAAAAAAAAAA	0.338													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	13955914	13955915	+	IGR	DEL	CA	-	-	rs111729007		TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr19:13955914_13955915delCA								MIR23A (8441 upstream) : MIR181C (29598 downstream)																							AATGGCATGGcacacacacaca	0.312													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	49047580	49047580	+	IGR	DEL	G	-	-			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr19:49047580delG								LMTK3 (31134 upstream) : SULT2B1 (7849 downstream)																							cagaattccaggcccccagcc	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	111391560	111391561	+	IGR	DEL	AA	-	-			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr2:111391560_111391561delAA								LOC151009 (249447 upstream) : BUB1 (3850 downstream)																							GAAGGTGGGCAAAAAAAAAAGC	0.396													4	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	239833378	239833379	+	IGR	DEL	AC	-	-			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr2:239833378_239833379delAC								TWIST2 (1141 upstream) : HDAC4 (136486 downstream)																							AAGcacacagacacacacacac	0.272													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	240659879	240659879	+	IGR	DEL	C	-	-			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr2:240659879delC								HDAC4 (336533 upstream) : NDUFA10 (240279 downstream)																							ccagccccggccccatccccg	0.000													3	4	---	---	---	---					
PMEPA1	56937	broad.mit.edu	37	20	56284593	56284595	+	In_Frame_Del	DEL	CGG	-	-			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr20:56284593_56284595delCGG	uc002xyq.2	-	1	437_439	c.44_46delCCG	c.(43-48)GCCGGG>GGG	p.A15del	PMEPA1_uc002xyr.2_Intron|PMEPA1_uc002xys.2_Intron|PMEPA1_uc002xyt.2_Intron|uc002xyu.1_5'Flank	NM_020182	NP_064567	Q969W9	PMEPA_HUMAN	transmembrane prostate androgen-induced protein	15	Extracellular (Potential).				androgen receptor signaling pathway	integral to membrane|plasma membrane	WW domain binding			pancreas(1)	1						TTGGGCTgcccggcggcggcggc	0.369													4	9	---	---	---	---					
DLEC1	9940	broad.mit.edu	37	3	38162039	38162040	+	Frame_Shift_Del	DEL	GA	-	-			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr3:38162039_38162040delGA	uc003cho.1	+	34	4826_4827	c.4805_4806delGA	c.(4804-4806)GGAfs	p.G1602fs	DLEC1_uc003chp.1_Frame_Shift_Del_p.G1602fs|DLEC1_uc010hgv.1_Frame_Shift_Del_p.G1605fs|DLEC1_uc003chr.1_Frame_Shift_Del_p.G673fs|DLEC1_uc003chs.1_Frame_Shift_Del_p.G159fs	NM_007335	NP_031361	Q9Y238	DLEC1_HUMAN	deleted in lung and esophageal cancer 1 isoform	1602					negative regulation of cell proliferation	cytoplasm				ovary(2)|pancreas(2)|central_nervous_system(2)|skin(2)|breast(1)	9				KIRC - Kidney renal clear cell carcinoma(284;0.0664)|Kidney(284;0.0827)		AGTGCGAGTGGAGAGAGAGAGA	0.579													7	121	---	---	---	---					
LNP1	348801	broad.mit.edu	37	3	100148586	100148588	+	In_Frame_Del	DEL	GAT	-	-			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr3:100148586_100148588delGAT	uc003dtx.3	+	2	1293_1295	c.13_15delGAT	c.(13-15)GATdel	p.D10del	LNP1_uc003dty.3_RNA|LNP1_uc011bhb.1_RNA	NM_001085451	NP_001078920	A1A4G5	LNP1_HUMAN	leukemia NUP98 fusion partner 1	10	Poly-Asp.										0						GGAGCACAAAGATGATGATGATG	0.507													7	334	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	186607776	186607777	+	IGR	DEL	TT	-	-			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr3:186607776_186607777delTT								ADIPOQ (31526 upstream) : ST6GAL1 (40739 downstream)																							cctctCCttctttttttttttt	0.010													2	4	---	---	---	---					
GABRA2	2555	broad.mit.edu	37	4	46392072	46392073	+	5'Flank	INS	-	G	G	rs138080870	by1000genomes	TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr4:46392072_46392073insG	uc003gxc.3	-						GABRA2_uc010igc.2_5'Flank|GABRA2_uc011bzc.1_5'Flank|GABRA2_uc003gxe.2_Intron|GABRA2_uc010igd.1_5'Flank	NM_001114175	NP_001107647	P47869	GBRA2_HUMAN	gamma-aminobutyric acid A receptor, alpha 2						gamma-aminobutyric acid signaling pathway|neurotransmitter transport|regulation of neurotransmitter levels	cell junction|chloride channel complex|integral to synaptic vesicle membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|skin(2)	4					Alprazolam(DB00404)|Bromazepam(DB01558)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Fludiazepam(DB01567)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	GAGCTGGGGCCGGGGGGGGAAA	0.579													4	4	---	---	---	---					
PCDH10	57575	broad.mit.edu	37	4	134073569	134073571	+	In_Frame_Del	DEL	CTG	-	-			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr4:134073569_134073571delCTG	uc003iha.2	+	1	3100_3102	c.2274_2276delCTG	c.(2272-2277)CTCTGC>CTC	p.C763del	PCDH10_uc003igz.2_In_Frame_Del_p.C763del	NM_032961	NP_116586	Q9P2E7	PCD10_HUMAN	protocadherin 10 isoform 1 precursor	763	Cys-rich.|Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2				LUSC - Lung squamous cell carcinoma(193;0.227)		ATTGCTGCCTCTGCTGCTGCTGC	0.581													10	69	---	---	---	---					
GNL1	2794	broad.mit.edu	37	6	30513930	30513931	+	Frame_Shift_Del	DEL	AT	-	-			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr6:30513930_30513931delAT	uc003nqh.2	-	12	2770_2771	c.1742_1743delAT	c.(1741-1743)GATfs	p.D581fs	GNL1_uc011dmi.1_Frame_Shift_Del_p.D378fs|GNL1_uc011dmj.1_Frame_Shift_Del_p.D579fs|GNL1_uc011dmk.1_Frame_Shift_Del_p.D236fs	NM_005275	NP_005266	P36915	GNL1_HUMAN	guanine nucleotide binding protein-like 1	581	Asp/Glu-rich (highly acidic).				response to DNA damage stimulus|signal transduction|T cell mediated immunity	extracellular space|intracellular	GTP binding|structural molecule activity			ovary(3)	3						GGGTctcctcatccccttctcc	0.332													2	4	---	---	---	---					
PBX2	5089	broad.mit.edu	37	6	32157986	32157986	+	5'Flank	DEL	G	-	-			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr6:32157986delG	uc003oav.1	-						PBX2_uc003oaw.2_5'Flank	NM_002586	NP_002577	P40425	PBX2_HUMAN	pre-B-cell leukemia homeobox 2								transcription factor binding			ovary(1)	1						ggagggagaaggggggggagc	0.254													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	108425820	108425820	+	IGR	DEL	T	-	-			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr6:108425820delT								OSTM1 (29879 upstream) : NR2E1 (61395 downstream)																							ATTATTATTATTTTTTTTGAG	0.224													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	160133141	160133142	+	IGR	INS	-	C	C			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr6:160133141_160133142insC								SOD2 (18788 upstream) : WTAP (14987 downstream)																							accaccactcagctgctcagac	0.079													8	169	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	130528302	130528303	+	IGR	DEL	AG	-	-	rs59949488		TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr7:130528302_130528303delAG								KLF14 (109442 upstream) : MIR29A (33203 downstream)																							aaaaaaaaaaagaaTTGTGGAA	0.257													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	70856514	70856514	+	IGR	DEL	T	-	-			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr8:70856514delT								SLCO5A1 (109215 upstream) : PRDM14 (107511 downstream)																							ATCTTTGAACttttttttttt	0.184													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	132216751	132216751	+	IGR	DEL	G	-	-			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr9:132216751delG								C9orf106 (131869 upstream) : C9orf50 (157755 downstream)																							tggaggtggtgggtggtggag	0.000													2	4	---	---	---	---					
LCN6	158062	broad.mit.edu	37	9	139645515	139645516	+	5'Flank	DEL	GA	-	-			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr9:139645515_139645516delGA	uc004ciy.2	-						LCN10_uc004ciw.2_5'Flank	NM_198946	NP_945184	P62502	LCN6_HUMAN	lipocalin 6 precursor						single fertilization	extracellular region	binding				0	all_cancers(76;0.0882)|all_epithelial(76;0.228)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.32e-06)|Epithelial(140;7.83e-05)		agggaagaaggagagagagaga	0.005													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	139663731	139663732	+	IGR	INS	-	C	C			TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chr9:139663731_139663732insC								LCN15 (4766 upstream) : TMEM141 (22045 downstream)																							tccatgcactgcccccccgcca	0.045													4	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	35036250	35036253	+	IGR	DEL	ACCA	-	-	rs6527405	by1000genomes	TCGA-J8-A3O1-01A-11D-A21A-08	TCGA-J8-A3O1-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	1471f233-85c1-4689-853a-01947d5ba299	d48f2242-1f17-4fef-a647-c19839582493	g.chrX:35036250_35036253delACCA								FAM47B (73216 upstream) : MAGEB16 (780206 downstream)																							acacacacacaccacacacacaca	0.083													2	4	---	---	---	---					
