Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
C1orf168	199920	genome.wustl.edu	37	1	57209923	57209923	+	Silent	SNP	A	A	C	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004303.4	-1	validated	p.V468	0.038	124	0%	134	41.8%	-	-	-	-	-	NULL
ZNF281	23528	genome.wustl.edu	37	1	200378328	200378328	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012482.3	-1	provisional	p.G169V	0.383	24	0%	35	25.7%	-	-	benign(0.225)	deleterious(0)	neutral(0.467)	NULL
HNRNPU-AS1	284702	genome.wustl.edu	37	1	245005933	245005935	+	RNA	DEL	ATG	ATG	-	rs143454146	byCluster;by1000genomes	TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	ATG	ATG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_026778.1	-1	predicted	NULL	0.000:0.000:0.000	-	-	-	-	-	-	-	-	-	-
BCL2L11	10018	genome.wustl.edu	37	2	111921737	111921737	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138621.3	+1	reviewed	p.E176K	0.156	27	0%	37	51.4%	-	-	possibly_damaging(0.837)	tolerated(0.13)	deleterious(0.572)	NULL
TTN	7273	genome.wustl.edu	37	2	179464474	179464474	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.W16148*	1.000	100	0%	100	12%	-	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
COL4A4	1286	genome.wustl.edu	37	2	227876939	227876939	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000092.4	-1	reviewed	p.R1431C	0.244	40	0%	52	38.5%	-	-	unknown(0)	tolerated(0.08)	-	HMMPfam_Collagen
CTNNB1	1499	genome.wustl.edu	37	3	41266101	41266101	+	Missense_Mutation	SNP	C	C	T	rs121913400	byCluster	TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098209.1	+1	reviewed	p.S33F	1.000	24	0%	39	51.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SDAD1	55153	genome.wustl.edu	37	4	76877148	76877148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018115.2	-1	validated	p.R666C	1.000	205	0%	220	41.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SDA1
CASP6	839	genome.wustl.edu	37	4	110617581	110617581	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001226.3	-1	reviewed	p.L98F	0.008	30	0%	29	34.5%	-	-	benign(0.008)	deleterious(0.04)	neutral(0.349)	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like
TLR3	7098	genome.wustl.edu	37	4	187004556	187004556	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003265.2	+1	reviewed	p.N572	0.172	64	0%	59	47.5%	-	-	-	-	-	HMMPfam_LRR_1,superfamily_SSF52058
TRIML1	339976	genome.wustl.edu	37	4	189063618	189063618	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178556.3	+1	provisional	p.S239	0.000	39	0%	52	55.8%	-	-	-	-	-	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67591127	67591155	+	Splice_Site	DEL	AGAAAGACGAGAGACCAATACTTGATGTA	AGAAAGACGAGAGACCAATACTTGATGTA	-	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	AGAAAGACGAGAGACCAATACTTGATGTA	AGAAAGACGAGAGACCAATACTTGATGTA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181523.1	+1	reviewed	e13-1	1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999:0.016:0.975:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.989:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	-
PIK3R1	5295	genome.wustl.edu	37	5	67591270	67591271	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181523.1	+1	reviewed	p.Q591fs	0.998:1.000	-	-	-	-	-	-	-	-	-	NULL
PCSK1	5122	genome.wustl.edu	37	5	95728961	95728961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000439.4	-1	reviewed	p.R669Q	0.989	79	0%	70	41.4%	-	-	benign(0.038)	deleterious(0.02)	neutral(0.385)	NULL
BTNL2	56244	genome.wustl.edu	37	6	32370970	32370970	+	Frame_Shift_Del	DEL	G	G	-	rs139418003	byCluster;by1000genomes	TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019602.1	-1	provisional	p.H151fs	0.944	-	-	-	-	-	-	-	-	-	HMMSmart_SM00409,HMMPfam_C2-set_2,superfamily_Immunoglobulin
ENSG00000247634	0	genome.wustl.edu	37	7	66416138	66416139	+	RNA	DEL	TG	TG	-	rs148803801	byCluster;by1000genomes	TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000500273	-1	known	NULL	0.000:0.000	-	-	-	-	-	-	-	-	-	-
SAMD9L	219285	genome.wustl.edu	37	7	92763041	92763041	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152703.2	-1	validated	p.T748	0.901	281	0%	269	16.7%	-	-	-	-	-	NULL
NAMPT	10135	genome.wustl.edu	37	7	105909635	105909635	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005746.2	-1	reviewed	p.H191N	1.000	38	0%	34	41.2%	-	-	possibly_damaging(0.839)	tolerated(0.06)	deleterious(0.643)	HMMPfam_NAPRTase
KCND2	3751	genome.wustl.edu	37	7	119914984	119914984	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012281.2	+1	reviewed	p.R100C	1.000	73	0%	22	36.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
CPA6	57094	genome.wustl.edu	37	8	68346315	68346315	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020361.4	-1	validated	p.P333	0.957	67	0%	65	30.8%	-	-	-	-	-	HMMPfam_Peptidase_M14,HMMSmart_SM00631,PatternScan_CARBOXYPEPT_ZN_2,superfamily_Zn-dependent exopeptidases
KCNQ3	3786	genome.wustl.edu	37	8	133150135	133150135	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004519.2	-1	reviewed	p.T566M	0.991	80	0%	59	44.1%	-	-	probably_damaging(0.992)	tolerated(0.1)	deleterious(0.734)	HMMPfam_KCNQ_channel
IGFBPL1	347252	genome.wustl.edu	37	9	38414130	38414130	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007563.1	-1	provisional	p.E177D	1.000	23	0%	17	23.5%	-	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
NDUFA8	4702	genome.wustl.edu	37	9	124914687	124914687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014222.2	-1	reviewed	p.V18M	1.000	43	0%	54	29.6%	-	-	possibly_damaging(0.885)	deleterious(0)	deleterious(0.790)	NULL
ARID5B	84159	genome.wustl.edu	37	10	63852262	63852262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032199.2	+1	validated	p.R1014C	1.000	45	0%	75	18.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RUFY2	55680	genome.wustl.edu	37	10	70161411	70161411	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017987.4	-1	validated	p.I123V	1.000	63	1.6%	48	37.5%	-	-	benign(0.205)	deleterious(0.01)	neutral(0.426)	HMMPfam_RUN
PTEN	5728	genome.wustl.edu	37	10	89685303	89685303	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.K66N	1.000	29	0%	42	23.8%	-	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89692904	89692904	+	Missense_Mutation	SNP	C	C	G	rs121909224	byCluster	TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.R130G	1.000	146	0%	187	49.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89717771	89717772	+	Frame_Shift_Ins	INS	-	-	AAAAG	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.D268fs	1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
ATG13	9776	genome.wustl.edu	37	11	46690090	46690091	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142673.1	+1	validated	p.K399fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_DUF2224
FNBP4	23360	genome.wustl.edu	37	11	47746246	47746246	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015308.2	-1	validated	p.S698*	1.000	101	0%	98	43.9%	-	-	-	-	-	NULL
OR5M11	219487	genome.wustl.edu	37	11	56310354	56310354	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005245.1	-1	provisional	p.D127G	0.038	69	0%	60	35%	-	-	benign(0.007)	deleterious(0.01)	neutral(0.406)	HMMPfam_7tm_1,superfamily_SSF81321
CASP1	834	genome.wustl.edu	37	11	104905837	104905837	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033292.2	-1	reviewed	p.A2fs	1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00114,superfamily_DEATH domain
TMEM132D	121256	genome.wustl.edu	37	12	129566529	129566529	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133448.2	-1	validated	p.R566	0.009	28	0%	19	36.8%	-	-	-	-	-	NULL
MED4	29079	genome.wustl.edu	37	13	48660552	48660552	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014166.2	-1	provisional	p.Q77E	1.000	38	0%	59	44.1%	-	-	benign(0.089)	tolerated(0.12)	neutral(0.267)	HMMPfam_VDRIP
COCH	1690	genome.wustl.edu	37	14	31355228	31355228	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135058.1	+1	reviewed	p.T396I	0.736	81	0%	63	39.7%	-	-	benign(0.003)	tolerated(0.18)	neutral(0.056)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
HIF1A	3091	genome.wustl.edu	37	14	62187113	62187113	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001530.3	+1	validated	p.R17G	1.000	95	0%	90	37.8%	-	-	possibly_damaging(0.951)	deleterious(0)	deleterious(0.839)	superfamily_HLH helix-loop-helix DNA-binding domain
ACSM1	116285	genome.wustl.edu	37	16	20651860	20651860	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052956.2	-1	validated	p.V347M	0.639	64	0%	35	34.3%	-	-	benign(0)	deleterious(0.03)	neutral(0.364)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
VMO1	284013	genome.wustl.edu	37	17	4689195	4689195	+	Splice_Site	DEL	C	C	-	rs146654793	byCluster;by1000genomes	TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144939.1	-1	validated	e2+1	0.000	-	-	-	-	-	-	-	-	-	-
SHBG	6462	genome.wustl.edu	37	17	7534600	7534600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040.3	+1	reviewed	p.P159L	0.041	10	0%	14	64.3%	-	-	possibly_damaging(0.539)	tolerated(0.37)	neutral(0.201)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_1
TEX2	55852	genome.wustl.edu	37	17	62290264	62290264	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018469.3	-1	validated	p.K438	0.008	65	0%	47	36.2%	-	-	-	-	-	NULL
SLC38A10	124565	genome.wustl.edu	37	17	79219501	79219503	+	In_Frame_Del	DEL	ATG	ATG	-	rs10569617	byCluster;by1000genomes	TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	ATG	ATG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037984.1	-1	validated	p.I1072in_frame_del	0.113:0.154:0.221	-	-	-	-	-	-	-	-	-	NULL
SWSAP1	126074	genome.wustl.edu	37	19	11486286	11486286	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175871.3	+1	validated	p.L95R	0.748	84	0%	80	40%	-	-	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	superfamily_SSF52540
ZNF440	126070	genome.wustl.edu	37	19	11942913	11942913	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152357.2	+1	validated	p.R308W	0.996	76	0%	99	19.2%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CYP4F2	8529	genome.wustl.edu	37	19	16001182	16001182	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001082.3	-1	reviewed	p.S196I	1.000	100	0%	90	15.6%	-	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_p450,superfamily_Cytochrome_P450
ZNF626	199777	genome.wustl.edu	37	19	20829139	20829139	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001076675.2	-1	validated	p.R26W	0.084	246	0%	235	33.2%	-	-	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
TMC4	147798	genome.wustl.edu	37	19	54666772	54666775	+	Frame_Shift_Del	DEL	TTGT	TTGT	-	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	TTGT	TTGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145303.1	-1	validated	p.K471fs	0.000:0.001:0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
ARFGEF2	10564	genome.wustl.edu	37	20	47641925	47641925	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006420.2	+1	reviewed	p.L1611V	1.000	21	0%	19	21.1%	-	-	possibly_damaging(0.833)	deleterious(0.01)	deleterious(0.723)	NULL
FAM48B2	170067	genome.wustl.edu	37	X	24330460	24330460	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136233.1	-1	provisional	p.L325I	0.000	85	0%	102	40.2%	-	-	-	-	-	NULL
SSX1	6756	genome.wustl.edu	37	X	48123284	48123284	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005635.2	+1	reviewed	p.Q133L	0.000	176	0%	223	38.6%	-	-	possibly_damaging(0.465)	tolerated(0.17)	neutral(0.212)	NULL
ITIH6	347365	genome.wustl.edu	37	X	54817288	54817288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198510.2	-1	reviewed	p.R200C	0.012	37	0%	44	52.3%	-	-	benign(0.007)	deleterious(0.02)	neutral(0.383)	NULL
ATP7A	538	genome.wustl.edu	37	X	77276503	77276503	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000052.4	+1	reviewed	p.V948A	0.975	186	0%	169	36.7%	-	-	benign(0.038)	deleterious(0)	neutral(0.447)	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transmembrane domain M
TSPAN6	7105	genome.wustl.edu	37	X	99889014	99889014	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003270.2	-1	reviewed	p.F122V	1.000	50	0%	56	41.1%	-	-	benign(0.017)	deleterious(0.01)	neutral(0.406)	superfamily_Tetraspanin,HMMPfam_Tetraspannin
LDOC1	23641	genome.wustl.edu	37	X	140271162	140271162	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GU-01A-11W-A062-09	TCGA-A5-A0GU-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012317.2	-1	reviewed	p.R15	0.999	19	0%	18	38.9%	-	-	-	-	-	NULL
