Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
DMAP1	55929	genome.wustl.edu	37	1	44685982	44685983	+	Splice_Site	INS	-	-	T	novel		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001034023.1	+1	reviewed	e9+1	1.000:1.000	-	-	-	-	-	-	-	-	-	-
ZZZ3	26009	genome.wustl.edu	37	1	78047468	78047468	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015534.4	-1	provisional	p.R634H	0.996	109	0%	40	45%	3	0%	benign(0.152)	tolerated(0.08)	neutral(0.314)	NULL
TRAPPC12	51112	genome.wustl.edu	37	2	3469478	3469478	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000416918	+1	known	p.T12M	0.000	58	0%	73	37%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	superfamily_TPR-like
SOS1	6654	genome.wustl.edu	37	2	39281778	39281778	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005633.3	-1	reviewed	p.N233Y	1.000	72	0%	44	40.9%	0	-	possibly_damaging(0.647)	tolerated(0.27)	neutral(0.261)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
ATP6V1B1	525	genome.wustl.edu	37	2	71190370	71190370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001692.3	+1	reviewed	p.E330K	1.000	61	0%	76	34.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ATP-synt_ab,superfamily_SSF52540
ZEB2	9839	genome.wustl.edu	37	2	145158777	145158777	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014795.3	-1	reviewed	p.R302Q	1.000	201	0%	57	43.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
LY75	4065	genome.wustl.edu	37	2	160688179	160688274	+	Splice_Site	DEL	CTATGGCTTGATAATTATGTTATAATGAAGTACAAAAACAAATAGAGAAAGTTGGCAGATTTACAACTTACTTCTATAAGTTATTCCTAACATGAC	CTATGGCTTGATAATTATGTTATAATGAAGTACAAAAACAAATAGAGAAAGTTGGCAGATTTACAACTTACTTCTATAAGTTATTCCTAACATGAC	-	novel		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	CTATGGCTTGATAATTATGTTATAATGAAGTACAAAAACAAATAGAGAAAGTTGGCAGATTTACAACTTACTTCTATAAGTTATTCCTAACATGAC	CTATGGCTTGATAATTATGTTATAATGAAGTACAAAAACAAATAGAGAAAGTTGGCAGATTTACAACTTACTTCTATAAGTTATTCCTAACATGAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002349.2	-1	validated	e29-1	1.000:1.000:0.903:0.937:0.967:0.988:0.995:1.000:1.000:0.989:0.972:0.960:0.909:0.896:0.072:0.069:0.928:0.931:0.544:0.545:0.149:0.004:0.003:0.003:0.099:0.984:0.999	-	-	-	-	-	-	-	-	-	-
PDE11A	50940	genome.wustl.edu	37	2	178685017	178685017	+	Silent	SNP	G	G	A	rs111708910		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000433879	-1	known	p.T141I	0.998	140	0%	52	48.1%	0	-	-	-	-	HMMPfam_GAF,HMMSmart_SM00065,superfamily_GAF domain-like
TTN	7273	genome.wustl.edu	37	2	179664276	179664276	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133379.3	-1	reviewed	p.S284	0.001	186	0%	76	30.3%	0	-	-	-	-	NULL
CTNNB1	1499	genome.wustl.edu	37	3	41266101	41266101	+	Missense_Mutation	SNP	C	C	G	rs121913400	byCluster	TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098209.1	+1	reviewed	p.S33C	1.000	121	0%	36	55.6%	31	48.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF445	353274	genome.wustl.edu	37	3	44489027	44489027	+	Silent	SNP	G	G	A	rs112610581	byCluster;byFrequency;by1000genomes	TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181489.5	-1	validated	p.S712	0.000	106	0%	43	39.5%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
LOC100287439	100287439	genome.wustl.edu	37	3	48454127	48454127	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342333.1	+1	model	p.P12S	0.000	40	0%	37	56.8%	0	-	-	-	-	NULL
LAMB2	3913	genome.wustl.edu	37	3	49159641	49159641	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002292.3	-1	reviewed	p.D1579G	1.000	62	0%	78	42.3%	141	29%	possibly_damaging(0.887)	deleterious(0.02)	deleterious(0.730)	NULL
GNAI2	2771	genome.wustl.edu	37	3	50294369	50294369	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002070.2	+1	reviewed	p.N242H	1.000	165	0%	232	49.1%	264	35.9%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
DOCK3	1795	genome.wustl.edu	37	3	51393634	51393634	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004947.3	+1	validated	p.R1455Q	1.000	135	0%	49	36.7%	0	-	probably_damaging(0.997)	tolerated(0.83)	neutral(0.467)	HMMPfam_Ded_cyto
GYG1	2992	genome.wustl.edu	37	3	148744654	148744654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000484197	+1	known	p.R239K	1.000	139	0%	60	53.3%	42	52.3%	benign(0.202)	tolerated(0.28)	neutral(0.051)	NULL
HGFAC	3083	genome.wustl.edu	37	4	3451126	3451126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001528.2	+1	reviewed	p.R650W	0.024	40	0%	58	53.4%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
IRX1	79192	genome.wustl.edu	37	5	3599697	3599697	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024337.3	+1	validated	p.G212D	1.000	98	0%	222	41.9%	0	-	probably_damaging(1)	tolerated(0.45)	deleterious(0.512)	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67589585	67589587	+	In_Frame_Del	DEL	CAT	CAT	-	novel		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	CAT	CAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181523.1	+1	reviewed	p.H450in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
PCDHA2	56146	genome.wustl.edu	37	5	140174682	140174682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018905.2	+1	reviewed	p.V45M	1.000	57	0%	90	53.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
KIAA0408	9729	genome.wustl.edu	37	6	127767965	127767965	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014702.4	-1	validated	p.H500R	0.000	269	0%	84	31%	0	-	benign(0.198)	tolerated(0.62)	neutral(0.023)	NULL
HIBADH	11112	genome.wustl.edu	37	7	27582591	27582591	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152740.2	-1	validated	p.G205R	1.000	155	0%	50	40%	19	42.1%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	superfamily_6-phosphogluconate dehydrogenase C-terminal domain-like,superfamily_NAD(P)-binding Rossmann-fold domains
PLXNA4	91584	genome.wustl.edu	37	7	131912350	131912350	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020911.1	-1	validated	p.T581fs	1.000	-	-	-	-	-	-	-	-	-	NULL
C8orf42	157695	genome.wustl.edu	37	8	494659	494664	+	In_Frame_Del	DEL	GGCGGC	GGCGGC	-	rs150473269	by1000genomes	TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	GGCGGC	GGCGGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175075.3	-1	validated	p.AA32in_frame_del	0.066:0.068:0.048:0.038:0.021:0.012	-	-	-	-	-	-	-	-	-	NULL
TMEM74	157753	genome.wustl.edu	37	8	109796608	109796608	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153015.1	-1	provisional	p.T240	0.274	118	0%	188	12.8%	0	-	-	-	-	NULL
PCSK5	5125	genome.wustl.edu	37	9	78686658	78686658	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006200.3	+1	reviewed	p.D246	0.999	109	0.9%	115	40%	1	0%	-	-	-	HMMPfam_Peptidase_S8,superfamily_Subtilisin-like
PTEN	5728	genome.wustl.edu	37	10	89717749	89717749	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.H259fs	1.000	-	-	-	-	-	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
PTEN	5728	genome.wustl.edu	37	10	89720799	89720802	+	Frame_Shift_Del	DEL	TACT	TACT	-	novel		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	TACT	TACT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.T319fs	1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
PKD2L1	9033	genome.wustl.edu	37	10	102056841	102056841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016112.2	-1	reviewed	p.V361I	0.011	200	0%	170	31.8%	0	-	benign(0.002)	tolerated(1)	-	HMMPfam_PKD_channel,superfamily_Voltage-gated potassium channels
SLC25A22	79751	genome.wustl.edu	37	11	792389	792389	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024698.4	-1	provisional	p.S219	0.000	53	0%	102	40.2%	15	40%	-	-	-	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
SLCO1B3	28234	genome.wustl.edu	37	12	21051410	21051410	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019844.2	+1	validated	p.Q575*	0.330	194	0%	87	40.2%	0	-	-	-	-	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter
DTX1	1840	genome.wustl.edu	37	12	113515475	113515475	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004416.2	+1	reviewed	p.L169P	1.000	24	0%	40	37.5%	1	100%	possibly_damaging(0.926)	deleterious(0)	deleterious(0.819)	HMMPfam_WWE,HMMSmart_WWE
KIAA0564	23078	genome.wustl.edu	37	13	42361623	42361623	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015058.1	-1	validated	p.I707T	1.000	155	0%	71	47.9%	0	-	possibly_damaging(0.95)	deleterious(0.02)	deleterious(0.776)	superfamily_P-loop containing nucleoside triphosphate hydrolases
SYT16	83851	genome.wustl.edu	37	14	62550928	62550928	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031914.2	+1	validated	p.P483	1.000	156	0%	146	43.8%	0	-	-	-	-	NULL
TSC2	7249	genome.wustl.edu	37	16	2134536	2134536	+	Missense_Mutation	SNP	G	G	A	rs45448791		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000548.3	+1	reviewed	p.R1438Q	0.004	28	0%	44	47.7%	44	43.1%	benign(0.001)	tolerated(0.22)	neutral(0.042)	NULL
XYLT1	64131	genome.wustl.edu	37	16	17211800	17211800	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022166.3	-1	reviewed	p.R754C	1.000	143	0%	54	31.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NDRG4	65009	genome.wustl.edu	37	16	58537768	58537768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130487.1	+1	reviewed	p.R82C	1.000	89	0%	93	43%	4	25%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_Ndr,superfamily_SSF53474
CTCF	10664	genome.wustl.edu	37	16	67654646	67654646	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006565.2	+1	reviewed	p.P378L	1.000	116	0%	31	45.2%	8	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_C2H2 and C2HC zinc fingers
SGSM2	9905	genome.wustl.edu	37	17	2266367	2266367	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014853.2	+1	validated	p.R204Q	1.000	40	0%	47	21.3%	4	25%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
ST6GALNAC2	10610	genome.wustl.edu	37	17	74570581	74570581	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006456.2	-1	validated	p.R76Q	0.000	31	0%	48	35.4%	2	100%	benign(0.032)	tolerated(0.13)	neutral(0.254)	HMMPfam_Glyco_transf_29
CCDC137	339230	genome.wustl.edu	37	17	79638795	79638796	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199287.2	+1	validated	p.V174fs	0.058:0.063	-	-	-	-	-	-	-	-	-	NULL
DNMT1	1786	genome.wustl.edu	37	19	10246949	10246949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130823.1	-1	reviewed	p.D1502N	1.000	105	0%	71	39.4%	76	55.2%	benign(0.349)	deleterious(0.01)	deleterious(0.516)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
SIPA1L3	23094	genome.wustl.edu	37	19	38621291	38621291	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015073.1	+1	validated	p.V1008M	1.000	39	0%	46	39.1%	2	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
ZNF628	89887	genome.wustl.edu	37	19	55994492	55994492	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033113.2	+1	validated	p.H640	0.559	19	0%	40	15%	6	16.6%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF334	55713	genome.wustl.edu	37	20	45131473	45131473	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018102.3	-1	validated	p.G169W	0.007	286	0%	249	42.6%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
LOC100288017	100288017	genome.wustl.edu	37	21	14568450	14568450	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343737.1	+1	model	p.L28fs	0.011	-	-	-	-	-	-	-	-	-	NULL
ENSG00000182490	0	genome.wustl.edu	37	22	19119752	19119752	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000383058	-1	known	p.R81C	0.971	38	0%	30	43.3%	0	-	-	-	-	NULL
ENSG00000210082	0	genome.wustl.edu	37	MT	2831	2831	+	RNA	SNP	G	G	A	novel		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000387347	+1	known	NULL	NULL	13	0%	27	40.7%	3756	38.4%	-	-	-	-
DDX3X	1654	genome.wustl.edu	37	X	41206199	41206199	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001356.3	+1	reviewed	p.P568L	1.000	217	0%	117	43.6%	31	70.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
FAAH2	158584	genome.wustl.edu	37	X	57475070	57475070	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0R9-01A-11D-A10B-09	TCGA-A5-A0R9-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174912.3	+1	reviewed	p.V448L	0.161	271	0%	43	41.9%	31	0%	possibly_damaging(0.812)	deleterious(0.01)	deleterious(0.711)	HMMPfam_Amidase,superfamily_Amidase signature (AS) enzymes
