Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
ESPN	83715	genome.wustl.edu	37	1	6512126	6512126	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031475.2	+1	reviewed	p.K765N	1.000	11	0%	47	38.3%	223	51.5%	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	NULL
UBE4B	10277	genome.wustl.edu	37	1	10190802	10190802	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105562.1	+1	reviewed	p.G614	1.000	63	0%	181	39.2%	2	100%	-	-	-	HMMPfam_Ufd2P_core
MTOR	2475	genome.wustl.edu	37	1	11189847	11189847	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004958.3	-1	reviewed	p.F1888V	1.000	30	0%	104	40.4%	16	56.2%	possibly_damaging(0.864)	deleterious(0)	deleterious(0.779)	HMMPfam_FAT,superfamily_ARM-type_fold
TMCO4	255104	genome.wustl.edu	37	1	20073669	20073669	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181719.4	-1	validated	p.G200	0.953	43	0%	41	34.1%	20	35%	-	-	-	HMMPfam_DUF726
OTUD3	23252	genome.wustl.edu	37	1	20220921	20220921	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015207.1	+1	validated	p.R144I	1.000	35	0%	169	43.8%	1	0%	probably_damaging(1)	tolerated(0.33)	deleterious(0.524)	HMMPfam_OTU,superfamily_SSF54001
EIF4G3	8672	genome.wustl.edu	37	1	21219989	21219989	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000374933	-1	known	p.Q245H	0.044	22	0%	86	34.9%	0	-	probably_damaging(0.954)	deleterious(0)	deleterious(0.842)	NULL
EPHA8	2046	genome.wustl.edu	37	1	22903143	22903143	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020526.3	+1	reviewed	p.R198H	1.000	17	0%	25	48%	0	-	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd,PatternScan_RECEPTOR_TYR_KIN_V_1,superfamily_Gal_bind_like
MYOM3	127294	genome.wustl.edu	37	1	24400740	24400740	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152372.3	-1	validated	p.E960*	0.914	38	0%	98	26.5%	0	-	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
RHCE	6006	genome.wustl.edu	37	1	25747172	25747172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020485.3	-1	reviewed	p.A36T	0.000	75	0%	260	35%	0	-	benign(0.005)	tolerated(0.81)	neutral(0.001)	HMMPfam_Ammonium_transp
LDLRAP1	26119	genome.wustl.edu	37	1	25891695	25891695	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015627.2	+1	reviewed	p.S260L	1.000	53	0%	289	35.3%	15	66.6%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
FAM54B	56181	genome.wustl.edu	37	1	26153266	26153266	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099625.1	+1	validated	p.E134K	1.000	9	0.000	19	0.421	50	52%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DUF729
ARID1A	8289	genome.wustl.edu	37	1	27106354	27106354	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006015.4	+1	reviewed	p.R1989*	1.000	26	0%	88	37.5%	29	58.6%	-	-	-	NULL
CSMD2	114784	genome.wustl.edu	37	1	34076791	34076791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052896.3	-1	validated	p.R2025W	1.000	36	0%	125	37.6%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CLSPN	63967	genome.wustl.edu	37	1	36204752	36204752	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022111.2	-1	reviewed	p.R1139*	1.000	25	0%	84	36.9%	2	0%	-	-	-	NULL
CSF3R	1441	genome.wustl.edu	37	1	36939178	36939178	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_156039.2	-1	reviewed	p.C177	0.783	37	0%	47	40.4%	1	0%	-	-	-	HMMSmart_FN3,superfamily_FN_III-like
GRIK3	2899	genome.wustl.edu	37	1	37285386	37285386	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000831.3	-1	reviewed	p.F608L	1.000	54	0%	98	32.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lig_chan,HMMSmart_PBPe,superfamily_SSF53850
MACF1	23499	genome.wustl.edu	37	1	39799307	39799307	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033044.2	+1	reviewed	p.V789	0.994	33	0%	68	47.1%	0	-	-	-	-	HMMSmart_PLEC,superfamily_SSF75399
MACF1	23499	genome.wustl.edu	37	1	39800846	39800846	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033044.2	+1	reviewed	p.K1302N	0.000	67	0%	90	42.2%	0	-	benign(0.079)	-	-	superfamily_SSF75399
PPIE	10450	genome.wustl.edu	37	1	40205860	40205860	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006112.2	+1	reviewed	p.D19N	1.000	70	0%	222	35.6%	29	55.1%	benign(0.065)	deleterious(0)	neutral(0.449)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
HIVEP3	59269	genome.wustl.edu	37	1	42041226	42041226	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024503.3	-1	validated	p.I1732	1.000	21	0%	102	34.3%	0	-	-	-	-	NULL
EBNA1BP2	10969	genome.wustl.edu	37	1	43630462	43630462	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006824.2	-1	validated	p.R241Q	1.000	31	0%	106	30.2%	68	42.6%	possibly_damaging(0.434)	deleterious(0.04)	deleterious(0.490)	HMMPfam_Ebp2
ST3GAL3	6487	genome.wustl.edu	37	1	44290509	44290509	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174963.2	+1	reviewed	p.L121V	0.011	45	0%	148	30.4%	0	-	benign(0.092)	tolerated(0.42)	neutral(0.021)	NULL
ZSWIM5	57643	genome.wustl.edu	37	1	45484261	45484261	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020883.1	-1	validated	p.F1141L	1.000	57	0%	189	40.2%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
ZSWIM5	57643	genome.wustl.edu	37	1	45484270	45484270	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020883.1	-1	validated	p.F1138L	1.000	59	0%	205	39%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DMBX1	127343	genome.wustl.edu	37	1	46976147	46976147	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172225.1	+1	reviewed	e2-1	1.000	21	0%	30	53.3%	0	-	-	-	-	-
ZFYVE9	9372	genome.wustl.edu	37	1	52703442	52703442	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004799.2	+1	reviewed	p.R118I	0.992	26	0%	52	42.3%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
ZYG11A	440590	genome.wustl.edu	37	1	53323158	53323158	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371528	+1	known	p.L249I	0.988	29	0%	95	38.9%	0	-	benign(0.006)	tolerated(0.39)	neutral(0.016)	superfamily_RNI-like
TCEANC2	127428	genome.wustl.edu	37	1	54534497	54534497	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153035.1	+1	predicted	p.E57D	0.978	77	0%	132	37.9%	4	50%	benign(0.029)	tolerated(0.33)	neutral(0.026)	HMMSmart_SM00509,HMMPfam_TFIIS,superfamily_Conserved domain common to transcription factors TFIIS elongin A CRSP70
C1orf177	163747	genome.wustl.edu	37	1	55279590	55279590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001110533.1	+1	validated	p.P289L	0.413	70	0%	179	39.1%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
C8B	732	genome.wustl.edu	37	1	57399006	57399006	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000066.2	-1	reviewed	e10+2	1.000	14	0%	23	43.5%	0	-	-	-	-	-
OMA1	115209	genome.wustl.edu	37	1	59004840	59004840	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145243.3	-1	provisional	p.V43I	0.000	51	0%	123	38.2%	4	50%	benign(0)	tolerated(1)	-	NULL
MYSM1	114803	genome.wustl.edu	37	1	59155904	59155904	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085487.1	-1	provisional	p.K105T	1.000	194	0%	302	34.1%	0	-	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
L1TD1	54596	genome.wustl.edu	37	1	62673111	62673111	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019079.4	+1	validated	p.D271Y	0.014	79	0%	69	47.8%	0	-	unknown(0)	deleterious(0.02)	-	HMMPfam_Transposase_22
L1TD1	54596	genome.wustl.edu	37	1	62675968	62675968	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019079.4	+1	validated	p.E508*	0.001	36	0%	61	37.7%	0	-	-	-	-	NULL
L1TD1	54596	genome.wustl.edu	37	1	62676462	62676462	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019079.4	+1	validated	p.E672D	0.000	79	0%	86	45.3%	0	-	possibly_damaging(0.806)	tolerated(0.39)	neutral(0.320)	HMMPfam_Transposase_22
DOCK7	85440	genome.wustl.edu	37	1	63113405	63113405	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033407.2	-1	validated	p.E259*	1.000	110	0%	231	36.8%	0	-	-	-	-	NULL
JAK1	3716	genome.wustl.edu	37	1	65332628	65332628	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002227.2	-1	reviewed	p.S304L	0.017	51	0%	159	37.1%	14	64.2%	benign(0)	tolerated(0.3)	neutral(0.029)	NULL
SGIP1	84251	genome.wustl.edu	37	1	67155971	67155971	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032291.2	+1	validated	p.S514	0.940	64	0%	119	38.7%	1	0%	-	-	-	NULL
TCTEX1D1	200132	genome.wustl.edu	37	1	67220427	67220427	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152665.2	+1	validated	p.F29C	0.004	48	0%	133	41.4%	1	0%	possibly_damaging(0.716)	deleterious(0.02)	deleterious(0.642)	NULL
LRRC7	57554	genome.wustl.edu	37	1	70397244	70397244	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020794.2	+1	validated	p.F196	1.000	37	0%	86	37.2%	0	-	-	-	-	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,HMMSmart_SM00365,superfamily_L domain-like
LRRC7	57554	genome.wustl.edu	37	1	70486791	70486791	+	Silent	SNP	C	C	T	rs145241026	by1000genomes	TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020794.2	+1	validated	p.D470	0.052	27	0%	89	40.4%	0	-	probably_damaging(0.999)	-	-	NULL
ACADM	34	genome.wustl.edu	37	1	76199306	76199306	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127328.1	+1	reviewed	p.S131Y	1.000	99	0%	393	38.9%	5	60%	possibly_damaging(0.931)	deleterious(0.01)	deleterious(0.783)	HMMPfam_Acyl-CoA_dh_N,superfamily_Acyl-CoA dehydrogenase NM domain-like
MSH4	4438	genome.wustl.edu	37	1	76354969	76354969	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002440.2	+1	validated	p.R714I	1.000	104	0%	179	41.9%	0	-	probably_damaging(0.998)	tolerated(0.08)	deleterious(0.774)	HMMPfam_MutS_V,HMMSmart_MUTSac,superfamily_SSF52540
ZZZ3	26009	genome.wustl.edu	37	1	78098979	78098979	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015534.4	-1	provisional	p.E21*	1.000	44	0%	54	42.6%	1	100%	-	-	-	NULL
USP33	23032	genome.wustl.edu	37	1	78194070	78194070	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015017.3	-1	validated	p.E380K	1.000	115	0%	289	37.4%	2	100%	benign(0.042)	deleterious(0.02)	neutral(0.386)	HMMPfam_UCH,superfamily_Cysteine proteinases
PTGFR	5737	genome.wustl.edu	37	1	78959072	78959072	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000959.3	+1	reviewed	p.V215A	0.999	56	0%	167	39.5%	0	-	possibly_damaging(0.529)	deleterious(0)	deleterious(0.623)	HMMPfam_7tm_1,superfamily_SSF81321
PTGFR	5737	genome.wustl.edu	37	1	78963588	78963588	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039585.1	+1	reviewed	p.E276D	0.549	124	0%	161	39.8%	0	-	benign(0)	tolerated(0.43)	neutral(0.013)	HMMPfam_7tm_1
IFI44L	10964	genome.wustl.edu	37	1	79102721	79102721	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006820.2	+1	validated	p.N294T	0.705	66	0%	138	41.3%	3	66.6%	benign(0.323)	deleterious(0.01)	deleterious(0.507)	superfamily_P-loop containing nucleoside triphosphate hydrolases
LPHN2	23266	genome.wustl.edu	37	1	82421628	82421628	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012302.2	+1	reviewed	p.S617Y	1.000	34	0%	98	35.7%	5	20%	possibly_damaging(0.905)	tolerated(0.1)	deleterious(0.646)	NULL
DNASE2B	58511	genome.wustl.edu	37	1	84878043	84878043	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021233.2	+1	reviewed	p.L187V	0.987	65	0%	147	44.9%	0	-	benign(0.361)	tolerated(0.28)	neutral(0.146)	HMMPfam_DNase_II
MCOLN3	55283	genome.wustl.edu	37	1	85486825	85486825	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018298.9	-1	validated	p.F485L	1.000	78	0%	147	42.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans
SYDE2	84144	genome.wustl.edu	37	1	85648386	85648386	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032184.1	-1	validated	p.E647*	1.000	103	0%	168	42.3%	0	-	-	-	-	NULL
SYDE2	84144	genome.wustl.edu	37	1	85648760	85648760	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032184.1	-1	validated	p.S522Y	1.000	52	0%	159	41.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
COL24A1	255631	genome.wustl.edu	37	1	86515835	86515835	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152890.5	-1	validated	p.A626V	0.277	100	0%	213	42.3%	0	-	benign(0)	tolerated(0.37)	neutral(0.019)	NULL
ODF2L	57489	genome.wustl.edu	37	1	86850427	86850427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020729.2	-1	validated	p.E102K	0.999	172	0%	193	38.3%	5	40%	probably_damaging(0.995)	tolerated(1)	neutral(0.458)	NULL
CLCA1	1179	genome.wustl.edu	37	1	86965705	86965705	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001285.3	+1	reviewed	p.E908*	0.128	38	0%	44	40.9%	0	-	-	-	-	NULL
ZNF644	84146	genome.wustl.edu	37	1	91404171	91404171	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201269.1	-1	validated	p.D914N	0.996	43	0%	105	47.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HFM1	164045	genome.wustl.edu	37	1	91779540	91779540	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017975.3	-1	validated	p.S1073N	1.000	190	0%	187	42.2%	0	-	benign(0.136)	tolerated(0.25)	neutral(0.049)	HMMPfam_Sec63
HFM1	164045	genome.wustl.edu	37	1	91861906	91861906	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017975.3	-1	validated	p.S43*	1.000	105	0%	226	41.2%	0	-	-	-	-	NULL
CDC7	8317	genome.wustl.edu	37	1	91977408	91977408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134419.1	+1	reviewed	p.R167H	1.000	121	0%	234	42.7%	2	0%	possibly_damaging(0.698)	tolerated(0.39)	neutral(0.267)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
BRDT	676	genome.wustl.edu	37	1	92479778	92479778	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001726.3	+1	validated	p.D931N	1.000	51	0%	115	39.1%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
RPL5	6125	genome.wustl.edu	37	1	93306176	93306176	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000969.3	+1	reviewed	p.K258N	1.000	47	0%	107	48.6%	2154	48.1%	benign(0.297)	deleterious(0)	deleterious(0.536)	NULL
ABCA4	24	genome.wustl.edu	37	1	94481340	94481340	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000350.2	-1	reviewed	p.S1756Y	0.998	41	0%	76	47.4%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
ABCD3	5825	genome.wustl.edu	37	1	94972162	94972162	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002858.3	+1	reviewed	p.V603	1.000	29	0%	158	39.2%	58	55.1%	-	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
COL11A1	1301	genome.wustl.edu	37	1	103379940	103379940	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080629.2	-1	reviewed	p.D1328Y	1.000	29	0%	56	44.6%	0	-	unknown(0)	deleterious(0)	-	NULL
AMY2B	280	genome.wustl.edu	37	1	104115864	104115864	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020978.3	+1	reviewed	p.N165K	1.000	245	0%	465	32.7%	2	0%	benign(0.192)	deleterious(0)	neutral(0.463)	HMMPfam_Alpha-amylase,HMMSmart_SM00642,superfamily_(Trans)glycosidases
LOC126987	126987	genome.wustl.edu	37	1	106623481	106623481	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342097.1	-1	model	p.R193Q	0.081	14	0%	23	39.1%	0	-	-	-	-	NULL
AKNAD1	254268	genome.wustl.edu	37	1	109395119	109395119	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152763.3	-1	validated	p.E56D	0.001	42	0%	148	48%	0	-	possibly_damaging(0.822)	tolerated(0.38)	neutral(0.329)	NULL
GNAT2	2780	genome.wustl.edu	37	1	110148685	110148685	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005272.3	-1	reviewed	p.K209N	1.000	29	0%	127	39.4%	1	0%	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
PHTF1	10745	genome.wustl.edu	37	1	114248492	114248492	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000447664	-1	known	p.K321T	0.000	67	0%	109	45%	1	100%	benign(0)	-	-	NULL
PTPN22	26191	genome.wustl.edu	37	1	114397639	114397639	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015967.4	-1	reviewed	p.K191N	1.000	43	0%	133	42.9%	0	-	probably_damaging(0.987)	tolerated(0.11)	deleterious(0.708)	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
TSHB	7252	genome.wustl.edu	37	1	115576655	115576655	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000549.3	+1	reviewed	p.R75I	0.987	48	0%	139	43.9%	0	-	benign(0.347)	deleterious(0.01)	deleterious(0.516)	HMMSmart_SM00068,HMMPfam_Cys_knot,superfamily_Cystine-knot cytokines
HAO2	51179	genome.wustl.edu	37	1	119927408	119927408	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005783.1	+1	reviewed	p.A98V	0.675	13	0%	31	45.2%	0	-	benign(0.038)	tolerated(0.06)	neutral(0.325)	HMMPfam_FMN_dh,superfamily_FMN-linked oxidoreductases
FCGR1B	2210	genome.wustl.edu	37	1	120927355	120927355	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017986.2	-1	validated	p.F209L	0.237	109	0%	278	19.8%	3	0%	probably_damaging(0.973)	deleterious(0.02)	deleterious(0.798)	NULL
PSMB4	5692	genome.wustl.edu	37	1	151372509	151372509	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002796.2	+1	reviewed	p.V65L	1.000	20	0%	44	59.1%	465	94.8%	possibly_damaging(0.928)	deleterious(0.01)	deleterious(0.781)	HMMPfam_Proteasome,PatternScan_PROTEASOME_B,superfamily_SSF56235
HRNR	388697	genome.wustl.edu	37	1	152193869	152193869	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009931.1	-1	validated	p.F79S	0.984	82	0%	246	40.7%	0	-	probably_damaging(0.999)	-	-	superfamily_SSF47473
FLG2	388698	genome.wustl.edu	37	1	152328228	152328228	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014342.2	-1	provisional	p.S678	0.000	67	0%	259	39.8%	0	-	-	-	-	NULL
LCE2D	353141	genome.wustl.edu	37	1	152636864	152636864	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178430.2	+1	validated	p.E95*	0.000	26	0%	58	79.3%	0	-	-	-	-	NULL
CRTC2	200186	genome.wustl.edu	37	1	153920640	153920640	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181715.1	-1	provisional	p.A676V	1.000	28	0%	70	32.9%	101	43.5%	benign(0.135)	tolerated(0.08)	neutral(0.311)	NULL
NUP210L	91181	genome.wustl.edu	37	1	154042914	154042914	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207308.2	-1	validated	p.V797F	0.998	43	0%	175	38.3%	0	-	probably_damaging(0.974)	tolerated(0.27)	neutral(0.450)	NULL
PAQR6	79957	genome.wustl.edu	37	1	156215385	156215385	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024897.2	-1	provisional	p.F45L	0.996	9	0.000	9	0.556	3	100%	benign(0)	tolerated(0.61)	neutral(0.004)	HMMPfam_HlyIII
PEX19	5824	genome.wustl.edu	37	1	160253413	160253413	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002857.3	-1	reviewed	p.F29	1.000	52	0%	118	76.3%	5	100%	-	-	-	NULL
FMO4	2329	genome.wustl.edu	37	1	171302015	171302015	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002022.1	+1	reviewed	p.N265	1.000	69	0%	174	41.4%	0	-	-	-	-	HMMPfam_FMO-like
HMCN1	83872	genome.wustl.edu	37	1	185985299	185985299	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031935.2	+1	reviewed	p.R1707*	0.789	32	0%	77	74%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
ASPM	259266	genome.wustl.edu	37	1	197070282	197070282	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018136.4	-1	reviewed	p.R2700Q	1.000	35	0%	29	82.8%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
PIK3C2B	5287	genome.wustl.edu	37	1	204425072	204425072	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002646.3	-1	reviewed	p.D619Y	0.003	17	0%	41	82.9%	0	-	benign(0)	deleterious(0.04)	neutral(0.349)	HMMSmart_SM00142
SRGAP2	23380	genome.wustl.edu	37	1	206610339	206610339	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015326.2	+1	validated	p.G442R	1.000	96	0%	270	44.8%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CR1L	1379	genome.wustl.edu	37	1	207890813	207890813	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175710.1	+1	validated	p.I473	0.547	84	0%	184	37%	2	0%	-	-	-	superfamily_Complement control module/SCR domain
CENPF	1063	genome.wustl.edu	37	1	214818329	214818329	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016343.3	+1	reviewed	p.E1806*	0.565	27	0%	47	40.4%	1	0%	-	-	-	NULL
LBR	3930	genome.wustl.edu	37	1	225611635	225611635	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002296.2	-1	reviewed	p.E48A	0.920	65	0%	185	41.6%	2	50%	benign(0.06)	tolerated(0.15)	neutral(0.245)	HMMSmart_TUDOR,HMMPfam_LBR_tudor
ITPKB	3707	genome.wustl.edu	37	1	226923648	226923648	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002221.3	-1	reviewed	p.G504	0.001	22	0%	33	66.7%	6	83.3%	-	-	-	NULL
ITPKB	3707	genome.wustl.edu	37	1	226924666	226924666	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002221.3	-1	reviewed	p.R165H	0.998	14	0%	18	94.4%	4	100%	possibly_damaging(0.441)	deleterious(0)	deleterious(0.589)	NULL
FAM89A	375061	genome.wustl.edu	37	1	231155813	231155813	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198552.2	-1	validated	p.S117	0.938	9	0.000	36	0.472	3	0%	-	-	-	NULL
C1orf131	128061	genome.wustl.edu	37	1	231360044	231360044	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152379.2	-1	validated	p.S288Y	1.000	84	0%	204	78.9%	11	90.9%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
ERO1LB	56605	genome.wustl.edu	37	1	236384239	236384239	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019891.3	-1	validated	p.K412N	1.000	80	0%	210	80%	2	100%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_ERO1,superfamily_ERO1
RYR2	6262	genome.wustl.edu	37	1	237787125	237787125	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.R1993C	0.997	82	0%	226	40.3%	0	-	probably_damaging(0.998)	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237791238	237791238	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.R2100W	0.995	45	0%	108	82.4%	0	-	probably_damaging(0.974)	-	-	NULL
C1orf101	257044	genome.wustl.edu	37	1	244803309	244803309	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130957.1	+1	validated	p.R928W	0.001	125	0%	472	83.5%	3	100%	benign(0)	tolerated(0.12)	neutral(0.261)	NULL
ZNF670	93474	genome.wustl.edu	37	1	247200935	247200935	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033213.2	-1	validated	p.R329K	0.994	104	0%	210	44.3%	4	75%	benign(0.045)	tolerated(0.21)	neutral(0.046)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
SH3YL1	26751	genome.wustl.edu	37	2	229928	229928	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000431160	-1	known	p.I229M	0.121	33	0%	98	42.9%	0	-	benign(0.006)	deleterious(0.01)	neutral(0.406)	NULL
MYT1L	23040	genome.wustl.edu	37	2	1805566	1805566	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015025.2	-1	validated	p.E1058*	1.000	280	0.4%	506	37.5%	0	-	-	-	-	NULL
ATP6V1C2	245973	genome.wustl.edu	37	2	10912016	10912016	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039362.1	+1	reviewed	p.F174	0.989	35	0%	89	37.1%	3	100%	-	-	-	HMMPfam_V-ATPase_C
GEN1	348654	genome.wustl.edu	37	2	17963129	17963129	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130009.1	+1	validated	p.E884*	0.000	35	0%	80	35%	0	-	-	-	-	NULL
OSR1	130497	genome.wustl.edu	37	2	19552980	19552980	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145260.2	-1	validated	p.T196M	1.000	41	0%	100	43%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
APOB	338	genome.wustl.edu	37	2	21230633	21230633	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000384.2	-1	reviewed	p.S3036Y	0.998	29	0%	46	37%	0	-	probably_damaging(1)	-	-	NULL
NCOA1	8648	genome.wustl.edu	37	2	24896324	24896324	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003743.4	+1	reviewed	p.L116I	1.000	43	2.3%	172	39.5%	2	100%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_SM00091,HMMPfam_PAS,superfamily_PYP-like sensor domain (PAS domain)
NCOA1	8648	genome.wustl.edu	37	2	24930613	24930613	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003743.4	+1	reviewed	p.K758N	1.000	74	0%	118	44.9%	4	50%	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	NULL
CENPO	79172	genome.wustl.edu	37	2	25039552	25039552	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024322.1	+1	provisional	p.R211I	1.000	26	0%	100	36%	0	-	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	NULL
GPR113	165082	genome.wustl.edu	37	2	26540976	26540976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145168.1	-1	validated	p.A65V	0.009	45	0%	83	51.8%	0	-	benign(0.023)	deleterious(0.02)	neutral(0.384)	NULL
OTOF	9381	genome.wustl.edu	37	2	26688698	26688698	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194248.2	-1	reviewed	p.I1547	0.998	46	0%	117	35%	0	-	-	-	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
AGBL5	60509	genome.wustl.edu	37	2	27278556	27278556	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021831.5	+1	validated	p.D305E	1.000	19	0%	39	33.3%	58	51.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_M14,superfamily_Zn-dependent exopeptidases
GPN1	11321	genome.wustl.edu	37	2	27853899	27853899	+	Missense_Mutation	SNP	C	C	T	rs183551437	by1000genomes	TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007266.3	+1	reviewed	p.R85C	1.000	177	0%	296	36.8%	8	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_AAA,HMMPfam_ATP_bind_1,superfamily_SSF52540
BRE	9577	genome.wustl.edu	37	2	28352238	28352238	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004899.3	+1	validated	p.R224Q	1.000	52	0%	187	39%	37	48.6%	possibly_damaging(0.733)	tolerated(0.09)	deleterious(0.565)	HMMPfam_BRE
SPDYA	245711	genome.wustl.edu	37	2	29045265	29045265	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142634.1	+1	validated	p.F123L	1.000	341	0%	399	44.4%	0	-	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	NULL
WDR43	23160	genome.wustl.edu	37	2	29169592	29169592	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015131.1	+1	validated	p.E661*	0.983	98	0%	188	41.5%	21	23.8%	-	-	-	NULL
LCLAT1	253558	genome.wustl.edu	37	2	30863262	30863262	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182551.3	+1	validated	p.R341K	1.000	70	0%	177	52%	2	0%	benign(0.041)	deleterious(0)	neutral(0.447)	NULL
MEMO1	51072	genome.wustl.edu	37	2	32145888	32145888	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015955.2	-1	validated	p.D102Y	1.000	45	0%	78	28.2%	16	31.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Memo
CEBPZ	10153	genome.wustl.edu	37	2	37454714	37454714	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005760.2	-1	validated	p.S541L	1.000	21	0%	61	36.1%	16	25%	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	HMMPfam_CBF,superfamily_ARM repeat
MAP4K3	8491	genome.wustl.edu	37	2	39487797	39487797	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003618.2	-1	reviewed	p.R753Q	1.000	34	0%	140	36.4%	9	44.4%	benign(0.012)	tolerated(0.33)	neutral(0.025)	HMMPfam_CNH,HMMSmart_SM00036
MAP4K3	8491	genome.wustl.edu	37	2	39492422	39492422	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003618.2	-1	reviewed	p.K686N	1.000	81	0%	98	49%	4	25%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMPfam_CNH,HMMSmart_SM00036
THADA	63892	genome.wustl.edu	37	2	43458127	43458127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083953.1	-1	validated	p.S1941L	0.000	24	0%	72	33.3%	53	41.5%	benign(0.002)	tolerated(0.08)	neutral(0.300)	NULL
SOCS5	9655	genome.wustl.edu	37	2	46985888	46985888	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014011.4	+1	reviewed	p.K73N	0.748	65	0%	103	42.7%	2	0%	benign(0.15)	tolerated(0.06)	neutral(0.336)	NULL
SPTBN1	6711	genome.wustl.edu	37	2	54839406	54839406	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003128.2	+1	reviewed	p.D137Y	1.000	15	0%	65	46.2%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
USP34	9736	genome.wustl.edu	37	2	61538990	61538990	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014709.3	-1	validated	p.L1200	1.000	37	0%	89	39.3%	2	0%	-	-	-	NULL
LOC100129162	100129162	genome.wustl.edu	37	2	62780138	62780138	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001725437.1	-1	model	p.R178*	0.405	13	0%	21	42.9%	0	-	-	-	-	NULL
CLEC4F	165530	genome.wustl.edu	37	2	71043127	71043127	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173535.2	-1	validated	p.Q462H	0.284	84	0%	172	39%	0	-	benign(0.051)	tolerated(0.17)	neutral(0.062)	NULL
ATP6V1B1	525	genome.wustl.edu	37	2	71170845	71170845	+	Splice_Site	SNP	T	T	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001692.3	+1	reviewed	e2+2	1.000	26	0%	70	40%	0	-	-	-	-	-
ZNF638	27332	genome.wustl.edu	37	2	71576839	71576839	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014972.1	+1	reviewed	p.V252A	0.996	47	0%	105	36.2%	4	75%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
DYSF	8291	genome.wustl.edu	37	2	71816813	71816813	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130987.1	+1	reviewed	p.D1165N	1.000	46	0%	106	37.7%	2	0%	probably_damaging(0.994)	tolerated(0.4)	neutral(0.468)	superfamily_C2_CaLB
CYP26B1	56603	genome.wustl.edu	37	2	72359652	72359652	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019885.2	-1	reviewed	p.D415N	1.000	13	0%	32	31.2%	0	-	possibly_damaging(0.845)	deleterious(0)	deleterious(0.768)	HMMPfam_p450,superfamily_Cytochrome_P450
SMYD5	10322	genome.wustl.edu	37	2	73446016	73446016	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006062.2	+1	validated	p.I42V	1.000	29	0%	101	25.7%	9	44.4%	benign(0.116)	tolerated(0.1)	neutral(0.295)	HMMSmart_SET,superfamily_SSF82199
STAMBP	10617	genome.wustl.edu	37	2	74076600	74076600	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006463.3	+1	reviewed	p.L285I	1.000	25	0%	86	36%	32	59.3%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_Mov34,HMMSmart_JAB_MPN,superfamily_SSF102712
GCFC2	6936	genome.wustl.edu	37	2	75897329	75897329	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003203.4	-1	validated	p.R680C	1.000	57	0%	114	33.3%	7	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GCFC
GCFC2	6936	genome.wustl.edu	37	2	75923336	75923336	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003203.4	-1	validated	p.L275V	0.905	150	0%	151	38.4%	1	0%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_GCFC
GCFC2	6936	genome.wustl.edu	37	2	75928322	75928322	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003203.4	-1	validated	p.I237	0.364	154	0%	377	39.8%	3	33.3%	-	-	-	NULL
POLR1A	25885	genome.wustl.edu	37	2	86327173	86327173	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015425.3	-1	validated	p.C67F	1.000	34	0%	97	38.1%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RNA_pol_Rpb1_1,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
CHMP3	51652	genome.wustl.edu	37	2	86737492	86737492	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016079.2	-1	reviewed	p.E133*	1.000	24	0%	106	42.5%	50	6%	-	-	-	HMMPfam_Snf7
IGKV2-24	28923	genome.wustl.edu	37	2	89475932	89475932	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000484817	-1	known	p.F80L	0.001	44	0%	147	37.4%	0	-	benign(0)	tolerated(0.71)	neutral(0.002)	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
IGKV1D-16	28901	genome.wustl.edu	37	2	90139147	90139147	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000492446	+1	known	p.L15F	0.971	38	0%	148	31.8%	0	-	benign(0.229)	tolerated(0.13)	neutral(0.276)	NULL
LMAN2L	81562	genome.wustl.edu	37	2	97400201	97400201	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000434865	-1	known	p.E84*	1.000	69	0%	275	37.5%	13	38.4%	-	-	-	NULL
FAHD2B	151313	genome.wustl.edu	37	2	97757409	97757409	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199336.1	-1	provisional	p.A12V	0.757	35	0%	85	48.2%	1	0%	benign(0.001)	tolerated(0.18)	neutral(0.056)	NULL
ANKRD36B	57730	genome.wustl.edu	37	2	98156527	98156527	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025190.3	-1	provisional	p.E421*	0.000	206	0%	188	35.1%	0	-	-	-	-	NULL
TMEM131	23505	genome.wustl.edu	37	2	98373825	98373825	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015348.1	-1	validated	p.G1797S	0.977	86	0%	189	40.2%	120	49.1%	benign(0)	tolerated(0.49)	neutral(0.011)	NULL
TMEM131	23505	genome.wustl.edu	37	2	98430749	98430749	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015348.1	-1	validated	p.A465	0.487	48	0%	123	41.5%	3	66.6%	-	-	-	NULL
RGPD3	653489	genome.wustl.edu	37	2	107040008	107040008	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144013.1	-1	validated	p.S1472Y	0.001	70	0%	50	30%	1	0%	benign(0.205)	deleterious(0.04)	neutral(0.369)	NULL
RGPD3	653489	genome.wustl.edu	37	2	107040325	107040325	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144013.1	-1	validated	p.R1366	0.995	127	0%	190	42.1%	0	-	-	-	-	HMMPfam_Ran_BP1,HMMSmart_RanBD,superfamily_SSF50729
GCC2	9648	genome.wustl.edu	37	2	109099602	109099602	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181453.3	+1	reviewed	p.E1144*	1.000	110	0%	147	28.6%	1	100%	-	-	-	NULL
RANBP2	5903	genome.wustl.edu	37	2	109381105	109381105	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006267.4	+1	reviewed	p.K1370N	0.696	28	0%	81	43.2%	3	33.3%	benign(0.05)	-	-	HMMPfam_zf-RanBP,HMMSmart_ZnF_RBZ,PatternScan_ZF_RANBP2_1
DPP10	57628	genome.wustl.edu	37	2	116572518	116572518	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020868.3	+1	validated	p.R617Q	0.996	51	0%	155	36.8%	0	-	benign(0.179)	tolerated(0.11)	neutral(0.288)	HMMPfam_Peptidase_S9,superfamily_alpha/beta-Hydrolases
CLASP1	23332	genome.wustl.edu	37	2	122162009	122162009	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015282.2	-1	validated	p.R891*	1.000	59	0%	112	40.2%	4	0%	-	-	-	superfamily_ARM repeat
WDR33	55339	genome.wustl.edu	37	2	128522061	128522061	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001006622.1	-1	reviewed	p.E323*	1.000	79	0%	77	39%	0	-	-	-	-	NULL
AMMECR1L	83607	genome.wustl.edu	37	2	128627099	128627099	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031445.2	-1	validated	p.R218Q	1.000	52	0%	127	40.2%	2	0%	benign(0.175)	tolerated(0.08)	neutral(0.316)	HMMPfam_AMMECR1
UGGT1	56886	genome.wustl.edu	37	2	128937366	128937366	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020120.3	+1	validated	p.M1274I	1.000	79	0%	224	39.3%	8	25%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Nucleotide-diphospho-sugar transferases
POTEF	728378	genome.wustl.edu	37	2	130833023	130833023	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099771.2	-1	validated	p.K674N	0.044	114	0%	180	43.9%	0	-	possibly_damaging(0.873)	deleterious(0)	deleterious(0.784)	NULL
POTEE	445582	genome.wustl.edu	37	2	131984493	131984493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083538.1	+1	validated	p.R303I	0.001	326	0%	403	38.5%	0	-	possibly_damaging(0.681)	deleterious(0)	deleterious(0.688)	HMMPfam_Ank,superfamily_Ankyrin repeat
LOC150786	150786	genome.wustl.edu	37	2	132120889	132120889	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077637.1	-1	validated	p.Q135H	1.000	143	0%	509	41.7%	0	-	-	-	-	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
NCKAP5	344148	genome.wustl.edu	37	2	133540708	133540708	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207363.2	-1	validated	p.E1226K	0.075	35	0%	111	41.4%	1	0%	possibly_damaging(0.888)	deleterious(0.02)	deleterious(0.730)	NULL
NCKAP5	344148	genome.wustl.edu	37	2	133543089	133543089	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207363.2	-1	validated	p.S432L	1.000	54	0%	171	12.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
NCKAP5	344148	genome.wustl.edu	37	2	133751790	133751790	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207363.2	-1	validated	p.L122I	1.000	119	0%	279	37.6%	0	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
YSK4	80122	genome.wustl.edu	37	2	135741333	135741333	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025052.3	-1	validated	p.K1045N	0.853	64	0%	133	37.6%	5	0%	benign(0.047)	deleterious(0.04)	neutral(0.352)	superfamily_Protein kinase-like (PK-like)
YSK4	80122	genome.wustl.edu	37	2	135743405	135743405	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025052.3	-1	validated	p.E1013*	0.038	95	0%	255	45.1%	5	20%	-	-	-	NULL
LRP1B	53353	genome.wustl.edu	37	2	141660576	141660576	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018557.2	-1	validated	p.V1227L	1.000	36	0%	112	42.9%	0	-	benign(0.009)	tolerated(0.71)	neutral(0.002)	HMMSmart_EGF,superfamily_SSF57196
ZEB2	9839	genome.wustl.edu	37	2	145158777	145158777	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014795.3	-1	reviewed	p.R302Q	1.000	30	0%	154	38.3%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
NEB	4703	genome.wustl.edu	37	2	152566195	152566195	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004543.4	-1	reviewed	p.K337T	1.000	62	0%	268	39.2%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Nebulin,HMMSmart_SM00227
WDSUB1	151525	genome.wustl.edu	37	2	160105008	160105008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128212.1	-1	validated	p.R383H	0.998	56	0%	189	36%	4	50%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2
BAZ2B	29994	genome.wustl.edu	37	2	160255348	160255348	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013450.2	-1	validated	p.R986*	1.000	87	0%	304	33.6%	1	0%	-	-	-	NULL
MARCH7	64844	genome.wustl.edu	37	2	160585683	160585683	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022826.2	+1	validated	p.Y50*	1.000	49	0%	88	36.4%	4	25%	-	-	-	NULL
LY75	4065	genome.wustl.edu	37	2	160661611	160661611	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002349.2	-1	validated	p.R1705*	1.000	41	0%	115	38.3%	23	65.2%	-	-	-	NULL
LY75	4065	genome.wustl.edu	37	2	160661723	160661723	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002349.2	-1	validated	p.Y1667	1.000	41	0%	122	34.4%	25	40%	-	-	-	NULL
LY75	4065	genome.wustl.edu	37	2	160676425	160676425	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002349.2	-1	validated	p.S1322Y	0.991	52	0%	172	39.5%	3	33.3%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
PLA2R1	22925	genome.wustl.edu	37	2	160825840	160825840	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007366.3	-1	validated	p.Q897H	0.999	76	0%	227	41%	3	66.6%	probably_damaging(0.996)	tolerated(0.47)	deleterious(0.473)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
FAP	2191	genome.wustl.edu	37	2	163076434	163076434	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004460.2	-1	reviewed	p.E139*	0.927	37	0%	91	36.3%	0	-	-	-	-	HMMPfam_DPPIV_N,superfamily_SSF82171
GRB14	2888	genome.wustl.edu	37	2	165383646	165383646	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004490.2	-1	reviewed	e4-1	1.000	144	0%	165	38.2%	0	-	-	-	-	-
SCN3A	6328	genome.wustl.edu	37	2	165947005	165947005	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006922.3	-1	reviewed	p.V1886	1.000	94	0%	106	34.9%	0	-	-	-	-	NULL
TTC21B	79809	genome.wustl.edu	37	2	166737279	166737279	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024753.3	-1	validated	p.Y1239H	1.000	33	0%	163	36.2%	9	33.3%	benign(0.023)	tolerated(0.22)	neutral(0.043)	superfamily_TPR-like
SCN7A	6332	genome.wustl.edu	37	2	167333982	167333982	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002976.2	-1	validated	p.K75N	0.013	55	0%	104	48.1%	0	-	benign(0.003)	tolerated(1)	-	superfamily_Voltage-gated potassium channels
XIRP2	129446	genome.wustl.edu	37	2	167760210	167760210	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152381.4	+1	validated	p.S73L	0.000	41	0%	81	34.6%	0	-	benign(0)	deleterious(0.02)	neutral(0.383)	NULL
XIRP2	129446	genome.wustl.edu	37	2	168100928	168100928	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152381.4	+1	validated	p.I1009S	0.999	35	0%	67	43.3%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
XIRP2	129446	genome.wustl.edu	37	2	168114854	168114854	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079810.2	+1	validated	p.L600V	0.000	45	0%	57	35.1%	0	-	possibly_damaging(0.8)	tolerated(0.1)	deleterious(0.587)	NULL
G6PC2	57818	genome.wustl.edu	37	2	169764535	169764535	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021176.2	+1	reviewed	p.F338L	0.710	63	0%	195	40%	0	-	benign(0)	tolerated(1)	-	NULL
LRP2	4036	genome.wustl.edu	37	2	170028611	170028611	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004525.2	-1	reviewed	p.R3726H	1.000	18	0%	68	25%	2	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,superfamily_LDL_rcpt_classA_cys-rich
C2orf77	129881	genome.wustl.edu	37	2	170506893	170506893	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085447.1	-1	validated	p.K366	0.931	256	0%	476	37.2%	8	50%	-	-	-	NULL
C2orf77	129881	genome.wustl.edu	37	2	170518917	170518917	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085447.1	-1	validated	p.R231I	0.009	263	0%	396	40.7%	2	100%	benign(0.039)	tolerated(0.2)	neutral(0.051)	NULL
SSB	6741	genome.wustl.edu	37	2	170663556	170663556	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003142.3	+1	provisional	p.E177*	1.000	132	0%	266	39.5%	16	6.2%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
MYO3B	140469	genome.wustl.edu	37	2	171258191	171258191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138995.3	+1	validated	p.E707K	1.000	24	0%	41	43.9%	0	-	benign(0)	tolerated(0.83)	neutral(0.001)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
ITGA6	3655	genome.wustl.edu	37	2	173349579	173349579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079818.1	+1	reviewed	p.R540Q	0.998	23	0%	33	42.4%	12	100%	benign(0.167)	tolerated(0.39)	neutral(0.031)	HMMPfam_Integrin_alpha2,superfamily_Integrin domains
ITGA6	3655	genome.wustl.edu	37	2	173354279	173354279	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079818.1	+1	reviewed	p.E858*	1.000	75	0%	127	46.5%	14	14.2%	-	-	-	HMMPfam_Integrin_alpha2,superfamily_Integrin domains
PDK1	5163	genome.wustl.edu	37	2	173429748	173429748	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002610.3	+1	reviewed	p.R213Q	1.000	78	0%	202	43.6%	3	33.3%	benign(0.003)	tolerated(0.11)	neutral(0.272)	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_BCDHK_Adom3
RBM45	129831	genome.wustl.edu	37	2	178990818	178990818	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000424099	+1	known	p.W45*	1.000	103	0%	190	33.7%	17	64.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_RNA-binding domain RBD
OSBPL6	114880	genome.wustl.edu	37	2	179247254	179247254	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000357080	+1	known	p.F480	0.003	25	0%	82	31.7%	0	-	-	-	-	NULL
PLEKHA3	65977	genome.wustl.edu	37	2	179367202	179367202	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000421187	+1	known	p.I114	0.002	47	0%	24	37.5%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179411451	179411451	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.F28998L	1.000	15	0%	32	28.1%	0	-	possibly_damaging(0.77)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179416614	179416614	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.S27768Y	1.000	59	0%	115	40.9%	0	-	probably_damaging(0.991)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179418274	179418274	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.E27250*	1.000	35	0%	59	30.5%	1	100%	-	-	-	HMMPfam_fn3
TTN	7273	genome.wustl.edu	37	2	179434109	179434109	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.E23014*	1.000	38	0%	56	46.4%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179593354	179593354	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.M5189I	1.000	71	0%	74	41.9%	0	-	unknown(0)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179602935	179602935	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.R3505*	0.874	18	0%	44	22.7%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179606598	179606598	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000342175	-1	known	p.E3617K	0.284	64	0%	73	35.6%	0	-	possibly_damaging(0.539)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179611243	179611243	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133379.3	-1	reviewed	p.D5295G	1.000	36	0%	74	45.9%	0	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
TTN	7273	genome.wustl.edu	37	2	179613947	179613947	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133379.3	-1	reviewed	p.E4394*	0.095	123	0%	67	46.3%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179631337	179631337	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133379.3	-1	reviewed	p.V3158	0.984	26	0%	73	27.4%	0	-	-	-	-	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
TTN	7273	genome.wustl.edu	37	2	179632555	179632555	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133379.3	-1	reviewed	p.N3134	1.000	37	0%	94	37.2%	0	-	-	-	-	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
TTN	7273	genome.wustl.edu	37	2	179632845	179632845	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133379.3	-1	reviewed	p.I3067M	0.998	35	0%	144	43.8%	0	-	possibly_damaging(0.741)	-	-	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
TTN	7273	genome.wustl.edu	37	2	179633572	179633572	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133379.3	-1	reviewed	p.I2997	1.000	78	0%	293	42.3%	0	-	-	-	-	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
CCDC141	285025	genome.wustl.edu	37	2	179742769	179742769	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173648.2	-1	provisional	p.E32D	0.020	77	0%	153	9.8%	0	-	benign(0.076)	tolerated(0.14)	neutral(0.255)	NULL
ITGA4	3676	genome.wustl.edu	37	2	182394329	182394329	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000885.4	+1	reviewed	p.S831Y	1.000	62	0%	185	42.7%	0	-	probably_damaging(0.957)	tolerated(0.06)	deleterious(0.723)	HMMPfam_Integrin_alpha2,superfamily_Integrin domains
DNAJC10	54431	genome.wustl.edu	37	2	183621186	183621186	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018981.1	+1	provisional	p.R600I	1.000	43	0%	153	47.7%	127	47.2%	benign(0.23)	deleterious(0.01)	neutral(0.429)	superfamily_Thioredoxin-like,HMMPfam_Thioredoxin
ZNF804A	91752	genome.wustl.edu	37	2	185801374	185801374	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194250.1	+1	provisional	p.F417L	0.001	42	0%	83	42.2%	0	-	benign(0)	tolerated(1)	-	NULL
CALCRL	10203	genome.wustl.edu	37	2	188245470	188245470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005795.4	-1	validated	p.D77N	0.987	16	0%	76	34.2%	1	0%	possibly_damaging(0.841)	deleterious(0.02)	deleterious(0.705)	HMMPfam_HRM,HMMSmart_HormR,PatternScan_G_PROTEIN_RECEP_F2_1,superfamily_SSF111418
TMEFF2	23671	genome.wustl.edu	37	2	192862995	192862995	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016192.2	-1	provisional	p.D246E	1.000	143	0%	251	39.4%	0	-	possibly_damaging(0.722)	tolerated(0.58)	neutral(0.267)	NULL
DNAH7	56171	genome.wustl.edu	37	2	196737151	196737151	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018897.2	-1	validated	p.I2152	0.987	56	0%	154	39.6%	1	0%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
STK17B	9262	genome.wustl.edu	37	2	197002227	197002227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004226.3	-1	validated	p.R355C	1.000	70	0%	174	43.1%	7	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HECW2	57520	genome.wustl.edu	37	2	197085594	197085594	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020760.1	-1	provisional	p.I1406	0.990	72	0%	318	40.9%	0	-	-	-	-	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
SF3B1	23451	genome.wustl.edu	37	2	198265007	198265007	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012433.2	-1	reviewed	p.R957Q	1.000	86	0%	130	46.2%	105	49.5%	probably_damaging(0.997)	tolerated(0.09)	deleterious(0.762)	HMMPfam_HEAT,superfamily_ARM repeat
PLCL1	5334	genome.wustl.edu	37	2	198949139	198949139	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006226.3	+1	validated	p.E202K	0.914	76	0%	108	40.7%	0	-	benign(0)	tolerated(1)	-	superfamily_SSF47473
ALS2CR12	130540	genome.wustl.edu	37	2	202172323	202172323	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000415745	-1	known	p.S41L	1.000	90	0%	210	43.3%	1	0%	-	-	-	NULL
DYTN	391475	genome.wustl.edu	37	2	207530685	207530685	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001093730.1	-1	provisional	p.R350I	0.012	137	0%	468	40.4%	0	-	possibly_damaging(0.852)	deleterious(0.01)	deleterious(0.733)	NULL
PIKFYVE	200576	genome.wustl.edu	37	2	209136403	209136403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015040.3	+1	reviewed	p.R54C	1.000	117	0%	238	35.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
UNC80	285175	genome.wustl.edu	37	2	210707151	210707151	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032504.1	+1	validated	p.E1147D	1.000	84	0%	204	38.2%	0	-	possibly_damaging(0.945)	deleterious(0.02)	deleterious(0.772)	NULL
UNC80	285175	genome.wustl.edu	37	2	210808169	210808169	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032504.1	+1	validated	p.F2261L	1.000	32	0%	137	37.2%	0	-	possibly_damaging(0.94)	deleterious(0)	deleterious(0.830)	NULL
ERBB4	2066	genome.wustl.edu	37	2	212488718	212488718	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005235.2	-1	reviewed	p.R711C	1.000	66	0%	149	36.9%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Protein kinase-like (PK-like)
ABCA12	26154	genome.wustl.edu	37	2	215798877	215798877	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173076.2	-1	reviewed	p.I2535M	1.000	52	0%	128	43%	2	50%	possibly_damaging(0.868)	deleterious(0)	deleterious(0.782)	NULL
ABCA12	26154	genome.wustl.edu	37	2	215910723	215910723	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173076.2	-1	reviewed	p.N237S	0.980	54	0%	122	36.9%	0	-	benign(0)	tolerated(0.14)	neutral(0.249)	NULL
PLCD4	84812	genome.wustl.edu	37	2	219498505	219498505	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000457426	+1	known	p.M193V	0.000	43	0%	86	39.5%	0	-	-	-	-	HMMSmart_SM00149
FARSB	10056	genome.wustl.edu	37	2	223504322	223504322	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005687.3	-1	reviewed	p.E144D	1.000	69	0%	168	39.3%	8	87.5%	benign(0.002)	tolerated(1)	-	HMMPfam_B3_4
ACSL3	2181	genome.wustl.edu	37	2	223786113	223786113	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004457.3	+1	reviewed	p.G307	0.995	41	0%	128	29.7%	12	66.6%	-	-	-	HMMPfam_AMP-binding,superfamily_SSF56801
SCG2	7857	genome.wustl.edu	37	2	224462447	224462447	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003469.3	-1	reviewed	p.I518	0.993	35	0%	179	41.3%	0	-	-	-	-	HMMPfam_Granin
DNER	92737	genome.wustl.edu	37	2	230456389	230456389	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139072.3	-1	validated	p.K164N	0.000	25	0%	79	50.6%	0	-	benign(0.173)	deleterious(0.02)	neutral(0.399)	NULL
TRIP12	9320	genome.wustl.edu	37	2	230661330	230661330	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004238.1	-1	provisional	p.L1190I	1.000	105	0%	211	33.6%	5	20%	probably_damaging(0.994)	deleterious(0.03)	deleterious(0.817)	NULL
SP140	11262	genome.wustl.edu	37	2	231109707	231109707	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007237.4	+1	validated	p.F192L	0.002	38	0%	130	40.8%	0	-	benign(0.138)	tolerated(0.65)	neutral(0.014)	NULL
SP100	6672	genome.wustl.edu	37	2	231379957	231379957	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003113.3	+1	validated	p.E748*	1.000	61	0%	137	32.1%	5	40%	-	-	-	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box
GPR55	9290	genome.wustl.edu	37	2	231775515	231775515	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005683.3	-1	validated	p.D55N	0.005	25	0%	28	35.7%	0	-	benign(0.255)	tolerated(0.05)	neutral(0.372)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ARMC9	80210	genome.wustl.edu	37	2	232100086	232100086	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025139.3	+1	validated	p.G258S	1.000	34	0%	125	42.4%	14	42.8%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	superfamily_ARM-type_fold
EIF4E2	9470	genome.wustl.edu	37	2	233431843	233431843	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004846.2	+1	validated	p.R195Q	1.000	40	0%	75	34.7%	221	48.4%	possibly_damaging(0.851)	tolerated(0.09)	deleterious(0.623)	HMMPfam_IF4E,superfamily_Translation initiation factor eIF4e
UGT1A10	54575	genome.wustl.edu	37	2	234545590	234545590	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019075.2	+1	reviewed	p.S141Y	0.158	187	0%	411	37.5%	0	-	benign(0.353)	tolerated(0.3)	neutral(0.140)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
SPP2	6694	genome.wustl.edu	37	2	234975902	234975902	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006944.2	+1	reviewed	p.F178L	0.000	65	0%	253	42.7%	0	-	benign(0.001)	tolerated(1)	-	HMMPfam_Spp-24
LRRFIP1	9208	genome.wustl.edu	37	2	238659843	238659843	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001137552.1	+1	validated	p.E138*	1.000	54	0%	214	33.6%	1	0%	-	-	-	HMMPfam_DUF2051
PER2	8864	genome.wustl.edu	37	2	239168626	239168626	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022817.2	-1	reviewed	p.K537N	0.742	420	0%	602	12.8%	3	0%	possibly_damaging(0.909)	tolerated(0.15)	deleterious(0.603)	NULL
CNTN4	152330	genome.wustl.edu	37	3	2942427	2942427	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175607.1	+1	reviewed	p.V333	0.812	58	0%	128	40.6%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
TRNT1	51095	genome.wustl.edu	37	3	3179062	3179062	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182916.2	+1	validated	p.M89I	1.000	49	0%	165	32.7%	3	66.6%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_PolyA_pol,superfamily_Nucleotidyltransferase
GRM7	2917	genome.wustl.edu	37	3	7721866	7721866	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181874.2	+1	reviewed	p.R861Q	1.000	18	0%	32	34.4%	0	-	probably_damaging(1)	tolerated(0.35)	deleterious(0.520)	NULL
THUMPD3	25917	genome.wustl.edu	37	3	9416270	9416270	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000441127	+1	known	p.E150*	1.000	78	0%	207	39.1%	21	19%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_UPF0020
GHRLOS2	84657	genome.wustl.edu	37	3	10327344	10327344	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_026829.1	+1	validated	NULL	0.016	21	0%	20	45%	2	50%	-	-	-	-
CAND2	23066	genome.wustl.edu	37	3	12892311	12892311	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000454887	+1	known	p.D141Y	1.000	24	0%	50	46%	3	0%	unknown(0)	tolerated(0.07)	-	NULL
NUP210	23225	genome.wustl.edu	37	3	13441304	13441304	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024923.2	-1	reviewed	p.Q75	1.000	7	0.000	16	0.375	0	-	-	-	-	NULL
SATB1	6304	genome.wustl.edu	37	3	18458526	18458526	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001131010.1	-1	validated	p.A86T	0.999	33	0%	89	41.6%	1	0%	benign(0.003)	tolerated(0.66)	neutral(0.003)	NULL
CLASP2	23122	genome.wustl.edu	37	3	33586266	33586266	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015097.1	-1	validated	p.A1074V	1.000	70	0%	185	38.9%	5	40%	possibly_damaging(0.481)	tolerated(0.45)	neutral(0.172)	superfamily_ARM repeat
SCN11A	11280	genome.wustl.edu	37	3	38913738	38913738	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014139.2	-1	validated	p.R1147	0.960	21	0%	38	21.1%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN11A	11280	genome.wustl.edu	37	3	38951638	38951638	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014139.2	-1	validated	p.T340	0.073	89	0%	123	36.6%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
XIRP1	165904	genome.wustl.edu	37	3	39226540	39226540	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194293.2	-1	provisional	p.R1466I	1.000	23	0%	19	47.4%	0	-	benign(0.349)	tolerated(0.11)	neutral(0.382)	NULL
C3orf77	375337	genome.wustl.edu	37	3	44284510	44284510	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145030.1	+1	validated	p.R171Q	0.086	66	0%	74	36.5%	0	-	benign(0.037)	tolerated(0.27)	neutral(0.036)	NULL
C3orf77	375337	genome.wustl.edu	37	3	44286556	44286556	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145030.1	+1	validated	p.I853S	1.000	54	0%	108	46.3%	0	-	benign(0.04)	deleterious(0)	neutral(0.447)	NULL
TMEM42	131616	genome.wustl.edu	37	3	44906601	44906601	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144638.1	+1	provisional	p.L137I	1.000	35	0%	199	45.7%	44	43.1%	possibly_damaging(0.945)	tolerated(0.33)	neutral(0.414)	NULL
SACM1L	22908	genome.wustl.edu	37	3	45751031	45751031	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014016.3	+1	validated	p.V125	1.000	81	0%	164	36.6%	4	25%	-	-	-	HMMPfam_Syja_N
LTF	4057	genome.wustl.edu	37	3	46501265	46501265	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002343.2	-1	reviewed	p.V30I	0.000	16	0%	120	34.2%	456	10.7%	benign(0)	tolerated(1)	-	HMMPfam_Transferrin,HMMSmart_TR_FER,superfamily_SSF53850
LRRC2	79442	genome.wustl.edu	37	3	46580568	46580568	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024512.3	-1	validated	p.K153Q	0.864	67	0%	195	35.4%	0	-	benign(0.002)	deleterious(0.05)	neutral(0.345)	superfamily_SSF52058
ENSG00000232483	0	genome.wustl.edu	37	3	48731815	48731815	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000421921	+1	novel	NULL	0.008	93	0%	132	37.9%	3	66.6%	-	-	-	-
IFRD2	7866	genome.wustl.edu	37	3	50325912	50325912	+	Silent	SNP	G	G	T	rs35360115		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006764.4	-1	validated	p.I456	1.000	37	0%	61	42.6%	91	36.2%	-	-	-	HMMPfam_IFRD_C
VPRBP	9730	genome.wustl.edu	37	3	51505009	51505009	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014703.2	-1	validated	p.L41F	1.000	51	0%	146	38.4%	0	-	benign(0.302)	deleterious(0.04)	neutral(0.443)	NULL
DNAH1	25981	genome.wustl.edu	37	3	52420758	52420758	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015512.4	+1	validated	p.K2964N	1.000	12	0%	16	25%	1	100%	benign(0.406)	tolerated(0.28)	neutral(0.162)	NULL
PRKCD	5580	genome.wustl.edu	37	3	53223100	53223100	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006254.3	+1	reviewed	p.F527L	1.000	32	0%	118	44.1%	137	46.7%	probably_damaging(0.99)	tolerated(0.76)	neutral(0.443)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
CACNA1D	776	genome.wustl.edu	37	3	53535718	53535718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000720.2	+1	validated	p.D152Y	1.000	241	0%	396	38.6%	0	-	probably_damaging(0.964)	deleterious(0)	deleterious(0.851)	superfamily_SSF81324
CCDC66	285331	genome.wustl.edu	37	3	56650046	56650046	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001141947.1	+1	validated	p.S603Y	0.000	94	0%	240	42.9%	1	100%	possibly_damaging(0.49)	tolerated(0.1)	neutral(0.450)	NULL
FAM208A	23272	genome.wustl.edu	37	3	56667140	56667140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001112736.1	-1	validated	p.V1227I	1.000	85	0%	169	40.8%	1	100%	possibly_damaging(0.94)	deleterious(0.02)	deleterious(0.768)	NULL
DNAH12	201625	genome.wustl.edu	37	3	57422698	57422698	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178504.4	-1	validated	p.E1522D	1.000	104	0%	103	38.8%	2	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ADAMTS9	56999	genome.wustl.edu	37	3	64641351	64641351	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182920.1	-1	reviewed	p.S357Y	1.000	66	0%	100	43%	0	-	possibly_damaging(0.947)	deleterious(0)	deleterious(0.835)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
LMOD3	56203	genome.wustl.edu	37	3	69169187	69169187	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198271.3	-1	validated	p.E107*	0.941	126	0%	222	36.9%	0	-	-	-	-	NULL
GBE1	2632	genome.wustl.edu	37	3	81698021	81698021	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000158.3	-1	reviewed	p.E226*	1.000	72	0%	111	30.6%	10	40%	benign(0.085)	deleterious(0.05)	neutral(0.351)	NULL
CRYBG3	131544	genome.wustl.edu	37	3	97596283	97596283	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153605.2	+1	validated	p.P134H	1.000	32	0%	30	40%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
OR5K1	26339	genome.wustl.edu	37	3	98189026	98189026	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004736.2	+1	provisional	p.F202L	0.972	192	0%	283	38.9%	0	-	benign(0.002)	tolerated(0.52)	neutral(0.009)	HMMPfam_7tm_1,superfamily_SSF81321
OR5K1	26339	genome.wustl.edu	37	3	98189280	98189280	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004736.2	+1	provisional	p.P287H	1.000	143	0%	131	36.6%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_7tm_1,superfamily_SSF81321
CLDND1	56650	genome.wustl.edu	37	3	98240162	98240162	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040182.1	-1	validated	p.R59Q	0.997	58	0%	147	38.1%	11	45.4%	benign(0.001)	tolerated(0.49)	neutral(0.011)	NULL
CBLB	868	genome.wustl.edu	37	3	105470379	105470379	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170662.3	-1	validated	p.K217T	1.000	48	0%	113	45.1%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cbl_N2,superfamily_EF-hand
PHLDB2	90102	genome.wustl.edu	37	3	111603511	111603511	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134438.1	+1	validated	p.S196L	0.646	23	0%	36	38.9%	0	-	possibly_damaging(0.889)	deleterious(0.01)	deleterious(0.755)	NULL
SLC9A10	285335	genome.wustl.edu	37	3	111997692	111997692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183061.1	-1	validated	p.A68T	0.541	63	0%	103	41.7%	0	-	probably_damaging(0.99)	tolerated(0.77)	neutral(0.443)	HMMPfam_Na_H_Exchanger
SPICE1	152185	genome.wustl.edu	37	3	113218408	113218408	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144718.3	-1	validated	p.K57E	1.000	140	0%	297	37.4%	2	0%	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	NULL
GRAMD1C	54762	genome.wustl.edu	37	3	113619973	113619973	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017577.4	+1	validated	p.S212	0.060	31	0%	136	33.8%	0	-	-	-	-	NULL
GSK3B	2932	genome.wustl.edu	37	3	119720937	119720937	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002093.3	-1	reviewed	p.E80*	1.000	47	0%	188	43.6%	3	33.3%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
FSTL1	11167	genome.wustl.edu	37	3	120123732	120123732	+	Silent	SNP	C	C	A	rs138829728	by1000genomes	TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007085.4	-1	reviewed	p.T183	0.996	86	0%	303	37%	36	25%	-	-	-	superfamily_SSF47473
STXBP5L	9515	genome.wustl.edu	37	3	121097679	121097679	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014980.2	+1	validated	p.R789*	1.000	26	0%	42	47.6%	0	-	-	-	-	NULL
HEG1	57493	genome.wustl.edu	37	3	124731647	124731647	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020733.1	-1	validated	p.E926*	0.064	76	0%	215	47.4%	0	-	-	-	-	NULL
NEK11	79858	genome.wustl.edu	37	3	130947432	130947432	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024800.4	+1	reviewed	p.C487Y	1.000	45	0%	107	40.2%	21	28.5%	benign(0.035)	deleterious(0.03)	neutral(0.366)	NULL
ACPP	55	genome.wustl.edu	37	3	132068846	132068846	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134194.1	+1	reviewed	p.A288	0.486	64	0%	196	35.7%	1	0%	-	-	-	HMMPfam_Acid_phosphat_A,PatternScan_HIS_ACID_PHOSPHAT_2,superfamily_SSF53254
EPHB1	2047	genome.wustl.edu	37	3	134898781	134898781	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004441.4	+1	reviewed	p.E613D	1.000	52	0%	163	36.8%	0	-	possibly_damaging(0.95)	deleterious(0)	deleterious(0.838)	superfamily_Protein kinase-like (PK-like)
NCK1	4690	genome.wustl.edu	37	3	136664729	136664729	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006153.3	+1	reviewed	p.E177D	1.000	68	0%	157	39.5%	51	43.1%	benign(0)	tolerated(0.36)	neutral(0.020)	NULL
ZBTB38	253461	genome.wustl.edu	37	3	141163681	141163681	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080412.2	+1	validated	p.T817	0.848	33	0%	73	41.1%	1	100%	-	-	-	NULL
XRN1	54464	genome.wustl.edu	37	3	142139914	142139914	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019001.3	-1	validated	p.A373T	1.000	122	0%	260	38.5%	0	-	benign(0.021)	tolerated(0.2)	neutral(0.050)	NULL
PLS1	5357	genome.wustl.edu	37	3	142422760	142422760	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145319.1	+1	reviewed	p.F474L	1.000	39	0%	83	41%	24	29.1%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology
U2SURP	23350	genome.wustl.edu	37	3	142741493	142741493	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080415.1	+1	provisional	p.K336T	1.000	68	0%	106	39.6%	5	0%	possibly_damaging(0.808)	tolerated(0.07)	deleterious(0.623)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
ZIC4	84107	genome.wustl.edu	37	3	147113930	147113930	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000383075	-1	known	p.L133	1.000	10	0%	27	44.4%	0	-	-	-	-	NULL
ANKUB1	389161	genome.wustl.edu	37	3	149485670	149485670	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144960.1	-1	predicted	p.V260A	0.999	24	0%	84	32.1%	9	77.7%	probably_damaging(0.959)	deleterious(0.02)	deleterious(0.786)	HMMSmart_SM00248,superfamily_Ankyrin repeat
FAM194A	131831	genome.wustl.edu	37	3	150403619	150403619	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152394.3	-1	validated	p.F231	0.064	137	0%	291	41.9%	0	-	-	-	-	NULL
ARHGEF26	26084	genome.wustl.edu	37	3	153912458	153912458	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015595.3	+1	validated	p.D599A	1.000	64	0%	121	41.3%	0	-	probably_damaging(0.958)	tolerated(0.2)	neutral(0.451)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
KCNAB1	7881	genome.wustl.edu	37	3	156249276	156249276	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172160.2	+1	reviewed	p.G387D	1.000	30	0%	116	34.5%	0	-	probably_damaging(0.974)	tolerated(0.09)	deleterious(0.712)	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase
MLF1	4291	genome.wustl.edu	37	3	158310341	158310341	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022443.3	+1	validated	p.G56*	0.000	76	0%	266	39.5%	11	9%	-	-	-	HMMPfam_Mlf1IP
SMC4	10051	genome.wustl.edu	37	3	160151484	160151484	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002800.1	+1	validated	p.R1252*	1.000	60	0%	102	49%	5	80%	-	-	-	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
TRIM59	286827	genome.wustl.edu	37	3	160156378	160156378	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173084.2	-1	validated	p.Q198H	1.000	67	0%	152	50.7%	1	0%	benign(0.027)	tolerated(0.31)	neutral(0.029)	NULL
SI	6476	genome.wustl.edu	37	3	164700805	164700805	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001041.3	-1	reviewed	p.Q1744H	0.950	152	0%	85	43.5%	0	-	benign(0.001)	tolerated(0.16)	neutral(0.059)	NULL
SI	6476	genome.wustl.edu	37	3	164709222	164709222	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001041.3	-1	reviewed	p.A1676D	1.000	37	0%	129	45.7%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_Glyco_hydro_31
SI	6476	genome.wustl.edu	37	3	164748573	164748573	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001041.3	-1	reviewed	p.R940I	0.000	71	0%	71	39.4%	0	-	benign(0.353)	deleterious(0)	deleterious(0.556)	HMMSmart_SM00018,superfamily_Trefoil
SI	6476	genome.wustl.edu	37	3	164777023	164777023	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001041.3	-1	reviewed	p.A404E	0.012	49	0%	134	40.3%	0	-	benign(0.027)	tolerated(0.93)	neutral(0.002)	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases
SI	6476	genome.wustl.edu	37	3	164780270	164780270	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001041.3	-1	reviewed	p.E303D	0.560	49	0%	75	45.3%	0	-	benign(0.003)	tolerated(0.56)	neutral(0.006)	NULL
SI	6476	genome.wustl.edu	37	3	164793789	164793789	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001041.3	-1	reviewed	p.K4N	0.514	56	0%	44	50%	0	-	unknown(0)	deleterious(0.02)	-	NULL
SLITRK3	22865	genome.wustl.edu	37	3	164907646	164907646	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014926.2	-1	validated	p.E325K	1.000	75	0%	301	42.2%	0	-	benign(0.002)	tolerated(0.19)	neutral(0.050)	NULL
EIF5A2	56648	genome.wustl.edu	37	3	170612213	170612213	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020390.5	-1	validated	e3-1	1.000	97	0%	204	37.7%	0	-	-	-	-	-
TNIK	23043	genome.wustl.edu	37	3	170819401	170819401	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015028.2	-1	validated	p.E810*	1.000	134	0%	383	37.9%	0	-	-	-	-	NULL
TNIK	23043	genome.wustl.edu	37	3	170828506	170828506	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015028.2	-1	validated	p.R761*	0.970	41	0%	65	43.1%	0	-	-	-	-	NULL
PIK3CA	5290	genome.wustl.edu	37	3	178916725	178916725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.R38C	1.000	40	0%	72	38.9%	2	100%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B
PIK3CA	5290	genome.wustl.edu	37	3	178916936	178916936	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.R108H	1.000	48	0%	92	42.4%	0	-	possibly_damaging(0.945)	tolerated(0.06)	deleterious(0.712)	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236
TTC14	151613	genome.wustl.edu	37	3	180321103	180321103	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133462.3	+1	validated	p.E160*	1.000	124	0%	313	39.3%	0	-	-	-	-	superfamily_Nucleic acid-binding proteins
ATP11B	23200	genome.wustl.edu	37	3	182554145	182554145	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014616.1	+1	validated	p.R147*	1.000	77	0%	142	35.9%	0	-	-	-	-	HMMPfam_E1-E2_ATPase,superfamily_SSF81653
MCF2L2	23101	genome.wustl.edu	37	3	182925454	182925454	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015078.2	-1	validated	p.R885Q	0.913	82	0%	188	42%	0	-	possibly_damaging(0.751)	deleterious(0.02)	deleterious(0.659)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
B3GNT5	84002	genome.wustl.edu	37	3	182988300	182988300	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032047.4	+1	reviewed	p.Y238*	0.967	51	2%	72	26.4%	7	57.1%	-	-	-	HMMPfam_Galactosyl_T
EIF4G1	1981	genome.wustl.edu	37	3	184045227	184045227	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182917.3	+1	reviewed	p.R1218W	0.787	16	0%	13	38.5%	173	44.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
EHHADH	1962	genome.wustl.edu	37	3	184910487	184910487	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001966.3	-1	reviewed	p.E567*	1.000	39	0%	81	40.7%	1	100%	-	-	-	HMMPfam_3HCDH,superfamily_6DGDH_C_like
KNG1	3827	genome.wustl.edu	37	3	186459780	186459780	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102416.2	+1	reviewed	p.T532I	0.268	25	0%	55	36.4%	0	-	possibly_damaging(0.839)	deleterious(0.04)	deleterious(0.669)	NULL
RTP2	344892	genome.wustl.edu	37	3	187416457	187416457	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004312.2	-1	validated	p.E169D	1.000	18	0%	47	29.8%	0	-	possibly_damaging(0.865)	tolerated(0.09)	deleterious(0.631)	NULL
LSG1	55341	genome.wustl.edu	37	3	194362881	194362881	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018385.2	-1	reviewed	p.N631	0.000	35	0%	79	36.7%	12	50%	-	-	-	NULL
LMLN	89782	genome.wustl.edu	37	3	197723056	197723056	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136049.2	+1	reviewed	p.R353Q	1.000	77	1.3%	161	39.8%	4	75%	probably_damaging(0.99)	tolerated(0.19)	deleterious(0.491)	"HMMPfam_Peptidase_M8,superfamily_Metalloproteases (""zincins"") catalytic domain"
ZNF141	7700	genome.wustl.edu	37	4	367050	367050	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003441.2	+1	validated	p.E275*	0.293	80	0%	94	39.4%	0	-	probably_damaging(0.989)	tolerated(0.26)	deleterious(0.474)	NULL
NOP14	8602	genome.wustl.edu	37	4	2940596	2940596	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003703.1	-1	validated	p.E846K	1.000	178	0%	300	42.7%	19	52.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Nop14
MRFAP1L1	114932	genome.wustl.edu	37	4	6711193	6711193	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203462.2	-1	validated	p.S55I	0.610	38	0%	54	48.1%	134	51.4%	possibly_damaging(0.805)	deleterious(0.01)	deleterious(0.709)	NULL
SH3TC1	54436	genome.wustl.edu	37	4	8216260	8216260	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018986.3	+1	validated	p.F145C	0.995	30	0%	79	35.4%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
BOD1L	259282	genome.wustl.edu	37	4	13615281	13615281	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148894.2	-1	validated	p.F393L	0.000	31	0%	55	41.8%	0	-	benign(0.011)	tolerated(0.66)	neutral(0.003)	superfamily_SSF81995
BOD1L	259282	genome.wustl.edu	37	4	13617097	13617097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148894.2	-1	validated	p.R133Q	1.000	45	0%	146	37%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_SSF81995
LGI2	55203	genome.wustl.edu	37	4	25005431	25005431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018176.3	-1	validated	p.R427Q	0.162	28	0%	62	38.7%	1	100%	benign(0.051)	tolerated(0.42)	neutral(0.017)	HMMPfam_EPTP
SEPSECS	51091	genome.wustl.edu	37	4	25157669	25157669	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016955.3	-1	validated	p.M100I	1.000	67	0%	291	40.2%	3	100%	benign(0.012)	tolerated(1)	neutral(0.001)	HMMPfam_SLA_LP_auto_ag,superfamily_PLP-dependent transferases
CCKAR	886	genome.wustl.edu	37	4	26490892	26490892	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000730.2	-1	reviewed	p.F109	0.987	70	0%	122	34.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
STIM2	57620	genome.wustl.edu	37	4	26959338	26959338	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020860.3	+1	reviewed	p.K216N	1.000	47	0%	57	40.4%	6	66.6%	probably_damaging(0.997)	tolerated(0.35)	deleterious(0.487)	superfamily_SAM/Pointed domain
KIAA1239	57495	genome.wustl.edu	37	4	37448023	37448023	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144990.1	+1	validated	p.K1471N	1.000	18	0%	57	35.1%	0	-	probably_damaging(0.996)	tolerated(0.05)	deleterious(0.807)	superfamily_WD40_like
TLR10	81793	genome.wustl.edu	37	4	38775278	38775278	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017388.1	-1	reviewed	p.S645Y	0.995	86	0%	228	39.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TIR,HMMSmart_TIR,superfamily_TIR
NSUN7	79730	genome.wustl.edu	37	4	40792753	40792753	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024677.4	+1	validated	p.E391*	1.000	78	0%	221	37.6%	1	0%	-	-	-	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
BEND4	389206	genome.wustl.edu	37	4	42122212	42122212	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207406.3	-1	validated	p.R416*	1.000	38	0%	134	38.8%	0	-	-	-	-	HMMPfam_BEN
GRXCR1	389207	genome.wustl.edu	37	4	42895469	42895469	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080476.1	+1	provisional	p.Q62H	0.880	48	0%	50	52%	0	-	benign(0)	deleterious(0.03)	neutral(0.364)	NULL
GABRA2	2555	genome.wustl.edu	37	4	46252502	46252502	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000807.2	-1	reviewed	p.T393	0.659	78	0%	66	42.4%	0	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
SPATA18	132671	genome.wustl.edu	37	4	52943055	52943055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145263.2	+1	provisional	p.R290H	0.265	22	0%	38	39.5%	33	42.4%	benign(0.064)	tolerated(0.18)	neutral(0.060)	NULL
KDR	3791	genome.wustl.edu	37	4	55956156	55956156	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002253.2	-1	reviewed	p.I1053M	0.995	38	0%	97	52.6%	1	0%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
CEP135	9662	genome.wustl.edu	37	4	56841077	56841077	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025009.3	+1	validated	p.S472Y	1.000	41	0%	99	33.3%	2	0%	benign(0.009)	deleterious(0)	neutral(0.445)	NULL
POLR2B	5431	genome.wustl.edu	37	4	57896508	57896508	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000938.1	+1	reviewed	p.A1126	0.623	23	0%	101	41.6%	113	44.2%	-	-	-	HMMPfam_RNA_pol_Rpb2_7,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
UGT2B15	7366	genome.wustl.edu	37	4	69535682	69535682	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001076.2	-1	validated	p.L219I	0.203	85	0%	126	44.4%	0	-	benign(0.019)	tolerated(0.16)	neutral(0.060)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2A1	10941	genome.wustl.edu	37	4	70505247	70505247	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000457664	-1	known	e2-1	1.000	56	0%	123	37.4%	0	-	-	-	-	-
CSN3	1448	genome.wustl.edu	37	4	71110544	71110544	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005212.2	+1	validated	p.S3I	0.000	109	0%	136	38.2%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Casein_kappa
CABS1	85438	genome.wustl.edu	37	4	71201148	71201148	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033122.3	+1	validated	p.S131Y	0.991	20	0%	28	46.4%	0	-	possibly_damaging(0.449)	deleterious(0)	deleterious(0.592)	NULL
MUC7	4589	genome.wustl.edu	37	4	71347367	71347367	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145006.1	+1	reviewed	p.E302D	0.000	217	0%	706	40.5%	0	-	unknown(0)	tolerated(0.44)	-	NULL
ENAM	10117	genome.wustl.edu	37	4	71508545	71508545	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031889.2	+1	reviewed	p.K468Q	0.979	51	0%	35	34.3%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
AFP	174	genome.wustl.edu	37	4	74315104	74315104	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134.1	+1	reviewed	p.L371I	0.925	96	0%	190	36.8%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_Serum_albumin,HMMPfam_Serum_albumin,HMMSmart_ALBUMIN
IL8	3576	genome.wustl.edu	37	4	74606378	74606378	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000584.2	+1	reviewed	p.M1I	1.000	23	0%	92	50%	74	77%	possibly_damaging(0.797)	deleterious(0.04)	deleterious(0.648)	NULL
PF4V1	5197	genome.wustl.edu	37	4	74719815	74719815	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002620.2	+1	provisional	p.I97	0.000	49	0%	178	30.9%	93	31.1%	-	-	-	HMMPfam_IL8,HMMSmart_SM00199,superfamily_Interleukin 8-like chemokines
EREG	2069	genome.wustl.edu	37	4	75248457	75248457	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001432.2	+1	validated	p.L125R	0.970	75	1.3%	291	37.8%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
PPEF2	5470	genome.wustl.edu	37	4	76804147	76804147	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006239.2	-1	reviewed	p.L289I	1.000	93	0%	257	39.7%	0	-	probably_damaging(0.978)	deleterious(0.02)	deleterious(0.803)	HMMPfam_Metallophos,HMMSmart_SM00156,superfamily_Metallo-dependent phosphatases
SDAD1	55153	genome.wustl.edu	37	4	76881297	76881297	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018115.2	-1	validated	p.E469*	1.000	146	0%	399	39.1%	5	0%	-	-	-	HMMPfam_SDA1,superfamily_ARM repeat
MRPL1	65008	genome.wustl.edu	37	4	78804651	78804651	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000502384	+1	known	p.E87*	1.000	65	0%	102	35.3%	13	15.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ribosomal_L1,superfamily_Ribosomal protein L1
FRAS1	80144	genome.wustl.edu	37	4	79308556	79308556	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025074.6	+1	reviewed	p.L1225I	0.482	15	0%	43	41.9%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
FRAS1	80144	genome.wustl.edu	37	4	79440607	79440607	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025074.6	+1	reviewed	p.F3503L	1.000	24	0%	48	37.5%	2	50%	probably_damaging(0.967)	tolerated(0.08)	deleterious(0.709)	NULL
GK2	2712	genome.wustl.edu	37	4	80328892	80328892	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033214.2	-1	validated	p.R155C	1.000	63	0%	196	43.9%	0	-	benign(0.33)	deleterious(0.02)	deleterious(0.486)	PatternScan_FGGY_KINASES_1,HMMPfam_FGGY_N,superfamily_SSF53067
PRKG2	5593	genome.wustl.edu	37	4	82070045	82070045	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006259.1	-1	provisional	p.D383Y	0.999	27	0%	71	39.4%	1	0%	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	HMMPfam_cNMP_binding,HMMSmart_cNMP,superfamily_cNMP_binding
SEC31A	22872	genome.wustl.edu	37	4	83763579	83763579	+	Silent	SNP	T	T	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000503937	-1	known	p.D44V	1.000	17	0%	22	36.4%	253	48.2%	-	-	-	NULL
SEC31A	22872	genome.wustl.edu	37	4	83763580	83763580	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077207.1	-1	reviewed	p.R894Q	1.000	17	0%	22	36.4%	251	48.6%	benign(0.001)	tolerated(0.76)	neutral(0.001)	NULL
SEC31A	22872	genome.wustl.edu	37	4	83784526	83784526	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077207.1	-1	reviewed	p.S485Y	1.000	126	0%	285	40%	19	36.8%	possibly_damaging(0.822)	deleterious(0.03)	deleterious(0.675)	superfamily_WD40 repeat-like
FAM175A	84142	genome.wustl.edu	37	4	84384689	84384689	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139076.2	-1	validated	p.R252*	0.005	200	0%	396	32.1%	2	50%	-	-	-	NULL
AGPAT9	84803	genome.wustl.edu	37	4	84518018	84518018	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032717.3	+1	validated	p.E288*	1.000	163	0%	201	32.3%	1	0%	-	-	-	HMMPfam_Acyltransferase,HMMSmart_PlsC
PTPN13	5783	genome.wustl.edu	37	4	87706500	87706500	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080685.2	+1	reviewed	p.A2084S	0.003	38	2.6%	92	32.6%	1	100%	benign(0.002)	deleterious(0.03)	neutral(0.364)	NULL
SPARCL1	8404	genome.wustl.edu	37	4	88415559	88415559	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128310.1	-1	validated	p.E131D	0.000	85	0%	237	46.8%	9	0%	benign(0.026)	tolerated(0.06)	neutral(0.324)	NULL
PPM1K	152926	genome.wustl.edu	37	4	89183867	89183867	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152542.3	-1	validated	p.Y333	0.984	31	0%	110	45.5%	2	0%	-	-	-	HMMSmart_SM00331,HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C
HERC5	51191	genome.wustl.edu	37	4	89421093	89421093	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016323.2	+1	reviewed	p.L821	1.000	183	0%	248	38.7%	0	-	-	-	-	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
C4orf37	285555	genome.wustl.edu	37	4	99049741	99049741	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174952.2	-1	validated	p.K75N	0.986	25	0%	67	43.3%	1	0%	possibly_damaging(0.819)	tolerated(0.08)	deleterious(0.609)	NULL
NFKB1	4790	genome.wustl.edu	37	4	103528406	103528406	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003998.3	+1	reviewed	p.S685F	0.980	14	0%	43	34.9%	41	53.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
MANBA	4126	genome.wustl.edu	37	4	103571759	103571759	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005908.3	-1	reviewed	p.H602N	1.000	58	0%	240	27.9%	17	41.1%	possibly_damaging(0.95)	tolerated(0.34)	neutral(0.417)	HMMPfam_Glyco_hydro_2_C,superfamily_Glyco_hydro_cat
MANBA	4126	genome.wustl.edu	37	4	103592468	103592468	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005908.3	-1	reviewed	p.F400L	1.000	76	0%	227	43.2%	6	33.3%	possibly_damaging(0.822)	deleterious(0.02)	deleterious(0.694)	HMMPfam_Glyco_hydro_2_C,superfamily_Glyco_hydro_cat
CCDC109B	55013	genome.wustl.edu	37	4	110581350	110581350	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017918.4	+1	validated	e3-1	1.000	26	0%	77	44.2%	1	0%	-	-	-	-
CFI	3426	genome.wustl.edu	37	4	110673657	110673657	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000204.3	-1	reviewed	p.E303*	0.067	87	0%	188	35.1%	101	0%	-	-	-	superfamily_LDL receptor-like module
LRIT3	345193	genome.wustl.edu	37	4	110791254	110791254	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198506.2	+1	validated	p.R405I	0.368	84	0%	182	41.8%	0	-	possibly_damaging(0.951)	tolerated(0.19)	neutral(0.444)	NULL
ANK2	287	genome.wustl.edu	37	4	114279329	114279329	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001148.4	+1	reviewed	p.D3185	0.006	28	0%	31	51.6%	1	100%	-	-	-	NULL
SEC24D	9871	genome.wustl.edu	37	4	119652527	119652527	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014822.2	-1	reviewed	p.E938K	1.000	53	0%	117	36.8%	77	46.7%	benign(0.178)	tolerated(0.52)	neutral(0.025)	HMMPfam_Gelsolin,superfamily_C-terminal gelsolin-like domain of Sec23/24
SEC24D	9871	genome.wustl.edu	37	4	119660425	119660425	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014822.2	-1	reviewed	p.T752	0.056	27	0%	53	45.3%	41	39%	-	-	-	HMMPfam_Sec23_BS,superfamily_beta-sandwich domain of Sec23/24
SEC24D	9871	genome.wustl.edu	37	4	119674014	119674014	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014822.2	-1	reviewed	p.R484Q	1.000	59	0%	77	44.2%	9	33.3%	possibly_damaging(0.904)	tolerated(0.12)	deleterious(0.619)	HMMPfam_Sec23_trunk,superfamily_vWA-like
SYNPO2	171024	genome.wustl.edu	37	4	119952165	119952165	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133477.2	+1	validated	p.F745L	1.000	40	0%	70	44.3%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
MAD2L1	4085	genome.wustl.edu	37	4	120982090	120982090	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000333047	-1	known	p.S88F	0.999	17	0%	103	37.9%	11	63.6%	benign(0.113)	-	-	NULL
KIAA1109	84162	genome.wustl.edu	37	4	123270344	123270344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015312.3	+1	reviewed	p.R4438C	1.000	39	0%	177	36.2%	2	100%	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	HMMPfam_FSA_C
FAT4	79633	genome.wustl.edu	37	4	126408688	126408688	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024582.4	+1	validated	p.F4335	0.992	41	0%	64	32.8%	0	-	-	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
FAT4	79633	genome.wustl.edu	37	4	126412093	126412093	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024582.4	+1	validated	p.F4706V	1.000	76	0%	112	38.4%	0	-	probably_damaging(0.995)	tolerated(0.49)	neutral(0.468)	NULL
PCDH18	54510	genome.wustl.edu	37	4	138451306	138451306	+	Missense_Mutation	SNP	G	G	T	rs144644832	by1000genomes	TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019035.3	-1	reviewed	p.S646Y	0.013	18	0%	36	30.6%	2	0%	possibly_damaging(0.91)	deleterious(0.04)	deleterious(0.712)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
NAA15	80155	genome.wustl.edu	37	4	140255353	140255353	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_057175.3	+1	validated	p.R27I	1.000	64	0%	113	39.8%	2	0%	probably_damaging(0.961)	deleterious(0)	deleterious(0.849)	superfamily_TPR-like
NAA15	80155	genome.wustl.edu	37	4	140306065	140306065	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_057175.3	+1	validated	p.T745	0.076	84	0%	116	46.6%	9	55.5%	-	-	-	NULL
MAML3	55534	genome.wustl.edu	37	4	140641423	140641423	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018717.4	-1	validated	p.R819Q	1.000	30	0%	131	37.4%	2	50%	probably_damaging(1)	tolerated(0.19)	deleterious(0.549)	NULL
INPP4B	8821	genome.wustl.edu	37	4	143029297	143029297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001101669.1	-1	reviewed	p.E775K	1.000	172	0%	187	43.3%	8	62.5%	possibly_damaging(0.884)	tolerated(0.71)	neutral(0.346)	NULL
OTUD4	54726	genome.wustl.edu	37	4	146071810	146071810	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102653.1	-1	reviewed	p.K307Q	0.998	88	0%	377	39.5%	4	50%	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	NULL
PRMT10	90826	genome.wustl.edu	37	4	148594947	148594947	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138364.2	-1	provisional	p.E139D	1.000	35	0%	131	43.5%	0	-	possibly_damaging(0.766)	deleterious(0.02)	deleterious(0.667)	superfamily_TPR-like,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
DCLK2	166614	genome.wustl.edu	37	4	151142908	151142908	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040260.2	+1	validated	p.N404K	1.000	78	0%	223	44.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
LRBA	987	genome.wustl.edu	37	4	151788952	151788952	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006726.2	-1	validated	p.K879N	1.000	75	0%	152	48.7%	0	-	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	superfamily_ARM repeat
FBXW7	55294	genome.wustl.edu	37	4	153259071	153259071	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033632.2	-1	reviewed	p.E248D	1.000	56	0%	191	39.8%	3	0%	benign(0.01)	tolerated(0.29)	neutral(0.030)	superfamily_WD40 repeat-like
KIAA0922	23240	genome.wustl.edu	37	4	154506627	154506627	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015196.3	+1	validated	p.S391F	0.363	22	0%	87	33.3%	0	-	benign(0.41)	tolerated(0.17)	neutral(0.192)	NULL
DCHS2	54798	genome.wustl.edu	37	4	155156318	155156318	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017639.3	-1	validated	p.Q2707	0.000	31	0%	69	31.9%	0	-	-	-	-	NULL
DCHS2	54798	genome.wustl.edu	37	4	155160433	155160433	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017639.3	-1	validated	p.P2006T	0.827	43	0%	57	35.1%	0	-	probably_damaging(0.978)	tolerated(0.53)	neutral(0.428)	HMMPfam_Cadherin,superfamily_Cadherin-like
FGB	2244	genome.wustl.edu	37	4	155489573	155489573	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005141.4	+1	reviewed	p.E253D	1.000	51	0%	114	34.2%	0	-	probably_damaging(0.986)	tolerated(0.3)	neutral(0.463)	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
FGG	2266	genome.wustl.edu	37	4	155533543	155533543	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021870.2	-1	reviewed	p.F41	1.000	101	0%	123	46.3%	0	-	-	-	-	HMMPfam_Fib_gamma
NPY5R	4889	genome.wustl.edu	37	4	164271473	164271473	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006174.2	+1	provisional	p.E16D	1.000	43	0%	126	34.1%	0	-	benign(0.137)	tolerated(0.2)	neutral(0.060)	superfamily_SSF81321
TKTL2	84076	genome.wustl.edu	37	4	164394205	164394205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032136.4	-1	validated	p.A228T	0.536	19	0%	73	41.1%	0	-	possibly_damaging(0.445)	deleterious(0)	deleterious(0.590)	HMMPfam_Transketolase_N,superfamily_SSF52518
ASB5	140458	genome.wustl.edu	37	4	177190068	177190068	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080874.2	-1	reviewed	p.G64	0.997	42	0%	76	34.2%	0	-	-	-	-	superfamily_Ankyrin repeat
C4orf47	441054	genome.wustl.edu	37	4	186353315	186353315	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114357.1	+1	predicted	p.L94I	0.269	66	0%	141	39.7%	3	100%	benign(0.094)	tolerated(0.62)	neutral(0.011)	NULL
CYP4V2	285440	genome.wustl.edu	37	4	187131688	187131688	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207352.3	+1	reviewed	p.E491*	1.000	54	0%	160	38.8%	3	100%	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
FAT1	2195	genome.wustl.edu	37	4	187542795	187542795	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005245.3	-1	reviewed	p.E1649*	1.000	15	0%	55	32.7%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
ZFP42	132625	genome.wustl.edu	37	4	188924697	188924697	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174900.3	+1	validated	p.R246W	0.999	25	0%	86	43%	0	-	possibly_damaging(0.893)	deleterious(0.01)	deleterious(0.758)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TRIML2	205860	genome.wustl.edu	37	4	189012880	189012880	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173553.1	-1	provisional	p.Y271H	0.004	55	0%	86	32.6%	0	-	benign(0.159)	deleterious(0)	neutral(0.459)	HMMPfam_SPRY
EXOC3	11336	genome.wustl.edu	37	5	462289	462289	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007277.4	+1	reviewed	p.L507*	1.000	50	0%	100	39%	11	0%	-	-	-	HMMPfam_Sec6
C5orf38	153571	genome.wustl.edu	37	5	2752551	2752551	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178569.2	+1	provisional	p.W58L	0.022	4	0.000	16	0.562	1	0%	unknown(0)	-	-	NULL
SEMA5A	9037	genome.wustl.edu	37	5	9136646	9136646	+	Silent	SNP	C	C	T	rs17238609	byCluster;byFrequency;by1000genomes	TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003966.2	-1	reviewed	p.T523	0.564	22	0%	70	40%	0	-	-	-	-	HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold
DNAH5	1767	genome.wustl.edu	37	5	13841053	13841071	+	Frame_Shift_Del	DEL	TAATCAGAGTCTCGTATTT	TAATCAGAGTCTCGTATTT	-	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	TAATCAGAGTCTCGTATTT	TAATCAGAGTCTCGTATTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001369.2	-1	reviewed	p.K1885fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.899:1.000:1.000:1.000:1.000:0.999	-	-	-	-	-	-	-	-	-	NULL
TRIO	7204	genome.wustl.edu	37	5	14290915	14290915	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007118.2	+1	validated	p.E211K	1.000	51	0%	123	37.4%	1	100%	unknown(0)	tolerated(0.16)	-	superfamily_CRAL/TRIO domain
CDH12	1010	genome.wustl.edu	37	5	21752167	21752167	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004061.3	-1	reviewed	p.K688N	1.000	87	0%	309	40.1%	0	-	benign(0.026)	tolerated(0.1)	neutral(0.287)	HMMPfam_Cadherin_C
PRDM9	56979	genome.wustl.edu	37	5	23522948	23522948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020227.2	+1	provisional	p.R279Q	0.973	14	0%	85	43.5%	0	-	possibly_damaging(0.516)	tolerated(1)	neutral(0.173)	HMMSmart_SET,superfamily_SSF82199
CDH10	1008	genome.wustl.edu	37	5	24537668	24537668	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006727.2	-1	reviewed	p.R116Q	1.000	43	0%	112	39.3%	0	-	probably_damaging(0.984)	deleterious(0.02)	deleterious(0.814)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
DROSHA	29102	genome.wustl.edu	37	5	31526816	31526816	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013235.4	-1	validated	p.R75Q	0.711	38	0%	49	26.5%	1	100%	unknown(0)	deleterious(0.01)	-	NULL
NPR3	4883	genome.wustl.edu	37	5	32789604	32789604	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024563.3	+1	predicted	p.L33I	0.017	41	0%	60	36.7%	1	100%	benign(0.29)	-	-	NULL
ADAMTS12	81792	genome.wustl.edu	37	5	33614442	33614442	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030955.2	-1	reviewed	p.Y810H	1.000	20	0%	119	37.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_ADAM_spacer1
AGXT2	64902	genome.wustl.edu	37	5	34998917	34998917	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031900.3	-1	reviewed	p.A484	0.322	195	0%	372	39.5%	0	-	-	-	-	superfamily_PyrdxlP-dep_Trfase_major
SLC1A3	6507	genome.wustl.edu	37	5	36680569	36680569	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004172.4	+1	reviewed	p.F389L	0.990	21	0%	79	26.6%	3	33.3%	possibly_damaging(0.941)	deleterious(0)	deleterious(0.831)	HMMPfam_SDF
EGFLAM	133584	genome.wustl.edu	37	5	38435340	38435340	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152403.2	+1	validated	p.S756	0.515	29	0%	112	50%	2	0%	-	-	-	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
FYB	2533	genome.wustl.edu	37	5	39127904	39127904	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001465.3	-1	validated	p.F616V	0.971	72	0%	198	40.4%	1	0%	possibly_damaging(0.894)	tolerated(0.18)	neutral(0.408)	NULL
C9	735	genome.wustl.edu	37	5	39306748	39306748	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001737.3	-1	reviewed	p.N463D	0.000	49	0%	106	29.2%	0	-	benign(0.002)	tolerated(0.62)	neutral(0.004)	HMMPfam_MACPF,HMMSmart_MACPF
FBXO4	26272	genome.wustl.edu	37	5	41941351	41941351	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012176.2	+1	reviewed	p.L378I	1.000	68	0%	229	41.9%	12	75%	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	NULL
GHR	2690	genome.wustl.edu	37	5	42713562	42713562	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000163.2	+1	reviewed	p.I272	1.000	258	0%	438	37%	0	-	-	-	-	NULL
MOCS2	4338	genome.wustl.edu	37	5	52394488	52394488	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004531.3	-1	reviewed	p.E171K	1.000	139	0%	223	35%	53	45.2%	possibly_damaging(0.95)	deleterious(0.03)	deleterious(0.758)	superfamily_Mb_biosynth_MoaE
IL6ST	3572	genome.wustl.edu	37	5	55247319	55247319	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002184.2	-1	reviewed	p.E605*	1.000	48	0%	110	41.8%	6	0%	-	-	-	HMMPfam_fn3,superfamily_Fibronectin type III
MAP3K1	4214	genome.wustl.edu	37	5	56168494	56168494	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005921.1	+1	validated	p.E484*	1.000	146	0%	226	39.4%	1	100%	-	-	-	HMMSmart_RING,superfamily_SSF57850
MAP3K1	4214	genome.wustl.edu	37	5	56177542	56177542	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005921.1	+1	validated	p.E839*	1.000	51	0%	97	38.1%	2	0%	-	-	-	NULL
ACTBL2	345651	genome.wustl.edu	37	5	56778460	56778460	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017992.2	-1	validated	p.D25	0.251	77	0%	42	40.5%	0	-	-	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
DEPDC1B	55789	genome.wustl.edu	37	5	59893588	59893588	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018369.2	-1	validated	p.R528*	1.000	96	0%	188	28.2%	2	100%	-	-	-	NULL
ELOVL7	79993	genome.wustl.edu	37	5	60050476	60050476	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001104558.1	-1	validated	p.G274V	0.838	71	0%	210	37.6%	2	0%	possibly_damaging(0.859)	deleterious(0.01)	deleterious(0.738)	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67588951	67588951	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181523.1	+1	reviewed	p.R348*	1.000	47	0%	131	42%	45	22.2%	-	-	-	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
CENPH	64946	genome.wustl.edu	37	5	68504123	68504123	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022909.3	+1	reviewed	p.K196N	0.127	139	0%	161	42.2%	6	16.6%	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	HMMPfam_CENP-H
MAP1B	4131	genome.wustl.edu	37	5	71491402	71491402	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005909.3	+1	validated	p.K740N	1.000	61	0%	70	37.1%	1	0%	unknown(0)	tolerated(0.36)	-	NULL
TNPO1	3842	genome.wustl.edu	37	5	72157727	72157727	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002270.3	+1	reviewed	p.Y150H	1.000	168	0%	397	41.6%	3	33.3%	benign(0.115)	tolerated(0.29)	neutral(0.038)	HMMPfam_HEAT,superfamily_ARM repeat
ANKRD31	256006	genome.wustl.edu	37	5	74506671	74506671	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000274361	-1	known	p.R103Q	0.831	137	0%	144	44.4%	0	-	benign(0)	-	-	NULL
SV2C	22987	genome.wustl.edu	37	5	75427717	75427717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014979.1	+1	provisional	p.R48W	1.000	76	0%	95	43.2%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_MFS_gen_substrate_transporter
IQGAP2	10788	genome.wustl.edu	37	5	75907009	75907009	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006633.2	+1	validated	e13+1	1.000	69	0%	210	36.2%	0	-	-	-	-	-
PDE8B	8622	genome.wustl.edu	37	5	76714057	76714057	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003719.2	+1	validated	p.S639R	1.000	11	0%	49	34.7%	5	20%	possibly_damaging(0.901)	tolerated(0.36)	neutral(0.377)	HMMPfam_PDEase_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like
AP3B1	8546	genome.wustl.edu	37	5	77330266	77330266	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003664.3	-1	reviewed	p.S938F	1.000	39	0%	72	41.7%	16	43.7%	possibly_damaging(0.449)	tolerated(0.71)	neutral(0.148)	NULL
VCAN	1462	genome.wustl.edu	37	5	82835822	82835822	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004385.4	+1	reviewed	p.E2334*	0.021	54	0%	74	43.2%	3	33.3%	-	-	-	NULL
RASA1	5921	genome.wustl.edu	37	5	86645108	86645108	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002890.1	+1	reviewed	p.E394*	1.000	74	0%	108	43.5%	1	0%	-	-	-	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
CETN3	1070	genome.wustl.edu	37	5	89695331	89695331	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004365.2	-1	reviewed	p.E102*	1.000	51	0%	160	40.6%	12	8.3%	-	-	-	HMMSmart_EFh,HMMPfam_efhand,superfamily_SSF47473
ARRDC3	57561	genome.wustl.edu	37	5	90669530	90669530	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020801.2	-1	validated	p.R387	1.000	23	0%	103	42.7%	40	50%	-	-	-	NULL
ANKRD32	84250	genome.wustl.edu	37	5	93989081	93989081	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032290.3	+1	validated	p.E329D	0.058	147	0%	219	38.8%	1	0%	benign(0)	tolerated(1)	-	NULL
MCTP1	79772	genome.wustl.edu	37	5	94288995	94288995	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000503301	-1	known	p.E112*	1.000	197	0%	302	42.1%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
ERAP2	64167	genome.wustl.edu	37	5	96248459	96248459	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130140.1	+1	validated	p.L825	0.266	36	0%	132	30.3%	54	53.7%	-	-	-	NULL
MAN2A1	4124	genome.wustl.edu	37	5	109152986	109152986	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002372.2	+1	reviewed	p.V652	0.993	47	0%	142	44.4%	1	0%	-	-	-	superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C
MAN2A1	4124	genome.wustl.edu	37	5	109190936	109190936	+	Missense_Mutation	SNP	C	C	A	rs71929671	byCluster;by1000genomes	TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002372.2	+1	reviewed	p.F1024L	0.000	22	0%	90	63.3%	11	45.4%	benign(0)	tolerated(0.66)	neutral(0.003)	superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C
WDR36	134430	genome.wustl.edu	37	5	110441018	110441018	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139281.2	+1	reviewed	p.F407C	1.000	73	0%	110	35.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
EPB41L4A	64097	genome.wustl.edu	37	5	111504476	111504476	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022140.3	-1	validated	p.S631Y	0.995	70	0%	163	39.3%	3	33.3%	possibly_damaging(0.437)	deleterious(0)	deleterious(0.587)	NULL
MCC	4163	genome.wustl.edu	37	5	112364657	112364657	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085377.1	-1	reviewed	p.F951	0.187	27	0%	115	42.6%	0	-	-	-	-	HMMPfam_MCC-bdg_PDZ
YTHDC2	64848	genome.wustl.edu	37	5	112862360	112862360	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022828.3	+1	validated	p.E185K	1.000	86	0%	102	44.1%	0	-	benign(0)	tolerated(0.43)	neutral(0.013)	NULL
PPIC	5480	genome.wustl.edu	37	5	122364492	122364492	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000943.4	-1	reviewed	p.I101	1.000	47	0%	126	42.1%	94	36.1%	-	-	-	HMMPfam_Pro_isomerase,superfamily_Cyclophilin-like
CEP120	153241	genome.wustl.edu	37	5	122685651	122685651	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153223.3	-1	reviewed	p.N905H	1.000	80	0%	196	42.3%	7	28.5%	probably_damaging(0.996)	tolerated(0.06)	deleterious(0.784)	NULL
CEP120	153241	genome.wustl.edu	37	5	122700210	122700210	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153223.3	-1	reviewed	p.E854*	1.000	57	0%	75	57.3%	0	-	-	-	-	NULL
CSNK1G3	1456	genome.wustl.edu	37	5	122923797	122923797	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001044723.1	+1	validated	p.H237N	1.000	109	0%	303	35.6%	5	40%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Kinase_like,HMMPfam_Pkinase
ZNF608	57507	genome.wustl.edu	37	5	123982611	123982611	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020747.2	-1	validated	p.A1156T	1.000	50	0%	170	41.8%	6	33.3%	benign(0.141)	deleterious(0.01)	neutral(0.418)	NULL
FBN2	2201	genome.wustl.edu	37	5	127624140	127624140	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001999.3	-1	reviewed	p.M2249I	1.000	42	0%	122	45.9%	6	16.6%	possibly_damaging(0.876)	tolerated(0.11)	deleterious(0.613)	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_EGF/Laminin
ADAMTS19	171019	genome.wustl.edu	37	5	128862051	128862051	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133638.3	+1	reviewed	p.E324*	1.000	58	0%	98	37.8%	0	-	-	-	-	"superfamily_Metalloproteases (""zincins"") catalytic domain"
IL5	3567	genome.wustl.edu	37	5	131879050	131879050	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000879.2	-1	reviewed	p.R41*	0.007	41	0%	130	35.4%	0	-	-	-	-	HMMPfam_IL5,superfamily_4_helix_cytokine
DDX46	9879	genome.wustl.edu	37	5	134109385	134109385	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014829.2	+1	reviewed	e5-1	1.000	136	0%	227	38.8%	0	-	-	-	-	-
C5orf24	134553	genome.wustl.edu	37	5	134190815	134190815	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135586.1	+1	validated	p.K75N	1.000	50	0%	57	43.9%	12	50%	probably_damaging(0.957)	tolerated(0.06)	deleterious(0.723)	NULL
TGFBI	7045	genome.wustl.edu	37	5	135391397	135391397	+	Missense_Mutation	SNP	C	C	T	rs192398905	by1000genomes	TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000358.2	+1	reviewed	p.A480V	0.998	22	0%	63	50.8%	23	13%	benign(0.021)	tolerated(1)	neutral(0.001)	HMMPfam_Fasciclin,HMMSmart_SM00554,superfamily_FAS1 domain
CTNNA1	1495	genome.wustl.edu	37	5	138117611	138117611	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001903.2	+1	validated	e1-1	1.000	23	0%	83	41%	0	-	-	-	-	-
SLC23A1	9963	genome.wustl.edu	37	5	138707860	138707860	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152685.3	-1	reviewed	p.Y548	0.721	57	1.8%	138	43.5%	19	68.4%	-	-	-	NULL
PCDHA10	56139	genome.wustl.edu	37	5	140238080	140238080	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031859.1	+1	reviewed	p.R816H	0.000	104	0%	274	40.1%	0	-	-	-	-	NULL
PCDHB4	56131	genome.wustl.edu	37	5	140501597	140501597	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018938.2	+1	reviewed	p.R6I	0.013	34	0%	191	38.7%	0	-	benign(0.114)	deleterious(0.01)	neutral(0.415)	NULL
PCDHGB1	56104	genome.wustl.edu	37	5	140730136	140730136	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018922.2	+1	reviewed	p.F103	0.658	34	0%	106	40.6%	0	-	-	-	-	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHGA5	56110	genome.wustl.edu	37	5	140744962	140744962	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018918.2	+1	reviewed	p.S355	0.000	26	0%	72	37.5%	1	0%	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHGB3	56102	genome.wustl.edu	37	5	140750183	140750183	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018924.2	+1	reviewed	p.F74L	0.047	11	0%	35	31.4%	0	-	-	-	-	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHGB3	56102	genome.wustl.edu	37	5	140750741	140750741	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018924.2	+1	reviewed	p.S260	0.000	33	0%	31	54.8%	0	-	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHGA6	56109	genome.wustl.edu	37	5	140754084	140754084	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018919.2	+1	reviewed	p.N145S	0.993	30	0%	69	29%	0	-	benign(0.001)	tolerated(1)	-	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHGA6	56109	genome.wustl.edu	37	5	140754514	140754514	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018919.2	+1	reviewed	p.I288	0.906	16	0%	71	35.2%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
KIAA0141	9812	genome.wustl.edu	37	5	141314128	141314128	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142603.1	+1	validated	p.L376I	0.606	24	0%	71	39.4%	32	43.7%	benign(0.055)	deleterious(0.05)	neutral(0.349)	HMMPfam_Sel1,HMMSmart_SEL1,superfamily_SSF81901
DPYSL3	1809	genome.wustl.edu	37	5	146780396	146780396	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001387.2	-1	validated	p.S323	0.999	22	0%	74	43.2%	3	0%	-	-	-	HMMPfam_Amidohydro_1,superfamily_Metalo_hydrolase,superfamily_SSF51556
JAKMIP2	9832	genome.wustl.edu	37	5	147051353	147051353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014790.3	-1	provisional	p.R6Q	1.000	27	0%	180	38.3%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
SPINK14	408187	genome.wustl.edu	37	5	147553882	147553882	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001325.1	+1	provisional	p.G66D	0.905	47	0%	109	37.6%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kazal_1,HMMSmart_KAZAL,PatternScan_KAZAL,superfamily_SSF100895
SH3TC2	79628	genome.wustl.edu	37	5	148407675	148407675	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024577.3	-1	reviewed	p.R540	0.999	10	0%	21	38.1%	0	-	-	-	-	HMMSmart_SM00028,superfamily_TPR-like
SLC26A2	1836	genome.wustl.edu	37	5	149360933	149360933	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000112.3	+1	reviewed	p.E593*	1.000	44	0%	113	33.6%	3	100%	-	-	-	HMMPfam_STAS,superfamily_STAS
TIGD6	81789	genome.wustl.edu	37	5	149374431	149374431	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030953.2	-1	validated	p.L494*	0.999	96	0%	176	48.9%	10	50%	-	-	-	NULL
ZNF300	91975	genome.wustl.edu	37	5	150275515	150275515	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052860.2	-1	reviewed	p.R429I	1.000	60	0%	68	35.3%	8	37.5%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
FAM114A2	10827	genome.wustl.edu	37	5	153413414	153413414	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018691.2	-1	validated	p.A114T	1.000	40	0%	124	45.2%	2	0%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMPfam_DUF719
KIF4B	285643	genome.wustl.edu	37	5	154394629	154394629	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099293.1	+1	provisional	p.R404S	0.050	68	0%	167	38.9%	0	-	benign(0.226)	deleterious(0.03)	neutral(0.387)	NULL
ATP10B	23120	genome.wustl.edu	37	5	160025945	160025945	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025153.2	-1	validated	p.F1132L	1.000	37	0%	62	46.8%	0	-	benign(0.31)	tolerated(0.65)	neutral(0.100)	NULL
GABRA1	2554	genome.wustl.edu	37	5	161302642	161302642	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000806.5	+1	reviewed	p.G185*	1.000	88	0%	197	44.2%	0	-	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
GABRG2	2566	genome.wustl.edu	37	5	161578742	161578742	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198903.2	+1	reviewed	p.R419W	1.000	91	0%	158	32.3%	0	-	benign(0.002)	deleterious(0.01)	neutral(0.406)	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
GABRG2	2566	genome.wustl.edu	37	5	161580244	161580244	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198903.2	+1	reviewed	p.R473Q	1.000	35	0%	144	40.3%	0	-	benign(0.098)	tolerated(0.27)	neutral(0.041)	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
DOCK2	1794	genome.wustl.edu	37	5	169435550	169435550	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004946.2	+1	validated	p.S1041Y	1.000	55	0%	194	39.7%	0	-	probably_damaging(0.977)	deleterious(0.01)	deleterious(0.825)	NULL
DRD1	1812	genome.wustl.edu	37	5	174869327	174869327	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000794.3	-1	reviewed	p.S259F	1.000	58	0%	99	39.4%	0	-	possibly_damaging(0.893)	deleterious(0.01)	deleterious(0.758)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SFXN1	94081	genome.wustl.edu	37	5	174936069	174936069	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022754.5	+1	validated	p.E67*	1.000	47	0%	110	44.5%	19	15.7%	-	-	-	HMMPfam_Mtc
ZNF354B	117608	genome.wustl.edu	37	5	178311278	178311278	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_058230.2	+1	validated	p.D609N	0.000	52	0%	74	47.3%	3	33.3%	benign(0)	tolerated(0.75)	neutral(0.002)	NULL
ZNF454	285676	genome.wustl.edu	37	5	178392054	178392054	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182594.2	+1	validated	p.E217*	0.675	88	0%	87	48.3%	0	-	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF354C	30832	genome.wustl.edu	37	5	178506634	178506634	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014594.1	+1	provisional	p.E401K	0.001	64	0%	108	35.2%	0	-	benign(0.021)	tolerated(0.39)	neutral(0.017)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZFP62	643836	genome.wustl.edu	37	5	180276852	180276852	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152283.4	-1	validated	p.L488P	1.000	75	0%	142	41.5%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TRIM7	81786	genome.wustl.edu	37	5	180622561	180622561	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203293.1	-1	reviewed	p.D381N	0.981	10	0.000	9	0.444	1	100%	probably_damaging(0.999)	tolerated(0.47)	deleterious(0.501)	HMMSmart_SM00589
TRIM41	90933	genome.wustl.edu	37	5	180651717	180651717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033549.3	+1	validated	p.V240I	1.000	33	0%	46	37%	19	57.8%	possibly_damaging(0.891)	deleterious(0.01)	deleterious(0.756)	HMMPfam_zf-B_box,HMMSmart_SM00336
RIPK1	8737	genome.wustl.edu	37	6	3111039	3111039	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003804.3	+1	validated	p.E527*	0.357	45	0%	118	42.4%	3	0%	-	-	-	NULL
PSMG4	389362	genome.wustl.edu	37	6	3290211	3290211	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000454610	+1	known	p.E106*	0.000	24	0%	30	33.3%	0	-	unknown(0)	-	-	NULL
MUTED	63915	genome.wustl.edu	37	6	8062775	8062775	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201280.1	-1	reviewed	p.E63*	1.000	74	0%	108	33.3%	0	-	-	-	-	NULL
KIF13A	63971	genome.wustl.edu	37	6	17809140	17809140	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000358380	-1	known	p.A68V	1.000	30	0%	125	33.6%	1	0%	-	-	-	NULL
NHLRC1	378884	genome.wustl.edu	37	6	18122080	18122080	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198586.2	-1	reviewed	p.R253I	0.075	11	0%	13	38.5%	6	50%	possibly_damaging(0.66)	tolerated(0.05)	deleterious(0.579)	superfamily_SSF101898
FAM65B	9750	genome.wustl.edu	37	6	24809984	24809984	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014722.2	-1	validated	p.E1023*	1.000	43	0%	120	38.3%	7	42.8%	-	-	-	superfamily_ARM repeat
SLC17A3	10786	genome.wustl.edu	37	6	25849630	25849630	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098486.1	-1	validated	p.P445H	0.824	49	0%	126	42.9%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
SLC17A3	10786	genome.wustl.edu	37	6	25851022	25851022	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098486.1	-1	validated	p.E266*	0.991	122	0%	342	43.6%	0	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
HIST1H3C	8352	genome.wustl.edu	37	6	26046006	26046006	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003531.2	+1	reviewed	p.K123R	1.000	8	0.000	36	0.444	2	0%	benign(0.017)	-	-	HMMSmart_SM00428,HMMPfam_Histone,superfamily_Histone-fold
BTN3A1	11119	genome.wustl.edu	37	6	26408108	26408108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007048.5	+1	validated	p.G215R	0.000	49	0%	151	39.7%	15	60%	benign(0.345)	deleterious(0.04)	neutral(0.458)	superfamily_Immunoglobulin
GPX5	2880	genome.wustl.edu	37	6	28500178	28500178	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001509.2	+1	reviewed	p.K147T	0.330	89	0%	234	35.5%	0	-	benign(0.202)	tolerated(0.08)	neutral(0.320)	HMMPfam_GSHPx,superfamily_Thiordxn-like_fd
SCAND3	114821	genome.wustl.edu	37	6	28542772	28542772	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052923.1	-1	provisional	p.E570D	1.000	51	0%	116	47.4%	0	-	possibly_damaging(0.892)	deleterious(0)	deleterious(0.796)	NULL
SCAND3	114821	genome.wustl.edu	37	6	28543325	28543325	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052923.1	-1	provisional	p.P386H	1.000	73	0%	106	41.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_rve,superfamily_RNaseH_fold
SRPK1	6732	genome.wustl.edu	37	6	35803246	35803246	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003137.3	-1	reviewed	p.T601	0.998	36	0%	104	33.7%	16	56.2%	-	-	-	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PNPLA1	285848	genome.wustl.edu	37	6	36270234	36270234	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145716.1	+1	validated	p.E372*	0.013	59	0%	63	31.7%	0	-	-	-	-	NULL
FRS3	10817	genome.wustl.edu	37	6	41739180	41739180	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006653.3	-1	reviewed	p.F219C	0.939	13	0%	22	36.4%	1	0%	benign(0.034)	tolerated(0.11)	neutral(0.274)	NULL
HSP90AB1	3326	genome.wustl.edu	37	6	44218201	44218201	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007355.2	+1	provisional	p.E274D	1.000	82	0%	107	42.1%	311	41.1%	possibly_damaging(0.609)	deleterious(0.02)	deleterious(0.594)	HMMPfam_HSP90
TDRD6	221400	genome.wustl.edu	37	6	46660908	46660908	+	Silent	SNP	T	T	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010870.2	+1	validated	p.I1681	0.008	48	0%	73	45.2%	0	-	-	-	-	NULL
TFAP2B	7021	genome.wustl.edu	37	6	50803903	50803903	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003221.3	+1	reviewed	p.S244L	1.000	29	0%	78	34.6%	0	-	possibly_damaging(0.915)	deleterious(0.01)	deleterious(0.772)	HMMPfam_TF_AP-2
GSTA5	221357	genome.wustl.edu	37	6	52698961	52698961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153699.1	-1	provisional	p.R131H	0.338	123	0%	506	37.2%	0	-	benign(0.101)	deleterious(0)	neutral(0.452)	HMMPfam_GST_C,superfamily_GST_C_like
LRRC1	55227	genome.wustl.edu	37	6	53764644	53764644	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018214.4	+1	validated	p.L248V	1.000	62	0%	228	43%	11	27.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,superfamily_L domain-like
GFRAL	389400	genome.wustl.edu	37	6	55192355	55192355	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207410.2	+1	validated	p.M1I	0.880	136	0%	446	38.8%	0	-	possibly_damaging(0.586)	deleterious(0)	deleterious(0.647)	NULL
GFRAL	389400	genome.wustl.edu	37	6	55264058	55264058	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207410.2	+1	validated	p.H345N	0.621	38	0%	81	39.5%	0	-	benign(0)	tolerated(0.6)	neutral(0.004)	NULL
BMP5	653	genome.wustl.edu	37	6	55739521	55739521	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021073.2	-1	reviewed	p.R48I	1.000	57	0%	124	45.2%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_TGFb_propeptide
DST	667	genome.wustl.edu	37	6	56417413	56417413	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015548.4	-1	reviewed	p.E2770K	1.000	32	0%	77	27.3%	0	-	probably_damaging(0.998)	-	-	HMMSmart_SM00150,superfamily_Spectrin repeat
DST	667	genome.wustl.edu	37	6	56417979	56417979	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015548.4	-1	reviewed	p.S2581Y	0.122	88	0%	237	34.6%	0	-	probably_damaging(0.991)	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DST	667	genome.wustl.edu	37	6	56438544	56438544	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015548.4	-1	reviewed	p.S1767Y	0.997	47	0%	141	37.6%	0	-	probably_damaging(0.991)	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DST	667	genome.wustl.edu	37	6	56468917	56468917	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000370769	-1	known	p.E3292D	0.000	123	0%	126	35.7%	0	-	possibly_damaging(0.643)	tolerated(0.13)	deleterious(0.478)	NULL
LGSN	51557	genome.wustl.edu	37	6	63989954	63989954	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016571.2	-1	reviewed	p.R501I	1.000	88	0%	131	38.2%	0	-	probably_damaging(0.989)	tolerated(0.05)	deleterious(0.785)	superfamily_Glutamine synthetase/guanido kinase
EYS	346007	genome.wustl.edu	37	6	65301640	65301640	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142800.1	-1	reviewed	p.R1374*	0.001	48	0%	64	43.8%	0	-	-	-	-	superfamily_Concanavalin A-like lectins/glucanases
COL19A1	1310	genome.wustl.edu	37	6	70897900	70897900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001858.4	+1	reviewed	p.S993F	0.810	23	0%	33	39.4%	0	-	probably_damaging(0.964)	tolerated(0.09)	deleterious(0.703)	HMMPfam_Collagen
FAM135A	57579	genome.wustl.edu	37	6	71235264	71235264	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105531.2	+1	validated	p.S630I	1.000	36	0%	67	40.3%	1	100%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
EEF1A1	1915	genome.wustl.edu	37	6	74229115	74229115	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001402.5	-1	reviewed	p.I90T	1.000	56	0%	114	36%	6743	47.5%	benign(0.002)	deleterious(0.02)	neutral(0.383)	HMMPfam_GTP_EFTU,superfamily_P-loop containing nucleoside triphosphate hydrolases
IMPG1	3617	genome.wustl.edu	37	6	76660415	76660415	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001563.2	-1	provisional	p.S563Y	0.993	23	0%	36	16.7%	0	-	probably_damaging(0.968)	tolerated(0.14)	deleterious(0.659)	superfamily_SSF82671
PHIP	55023	genome.wustl.edu	37	6	79664566	79664566	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017934.5	-1	validated	p.P1340S	1.000	45	0%	136	33.1%	4	75%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1
LCA5	167691	genome.wustl.edu	37	6	80197569	80197569	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122769.2	-1	reviewed	p.E416*	0.641	252	0%	334	36.8%	2	50%	-	-	-	NULL
LCA5	167691	genome.wustl.edu	37	6	80202322	80202322	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122769.2	-1	reviewed	p.R301C	1.000	222	0%	357	45.7%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TTK	7272	genome.wustl.edu	37	6	80723019	80723019	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003318.4	+1	reviewed	p.R307Q	0.989	51	0%	113	33.6%	2	100%	benign(0.366)	tolerated(0.08)	neutral(0.416)	NULL
TTK	7272	genome.wustl.edu	37	6	80749510	80749510	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003318.4	+1	reviewed	p.K743T	0.998	62	0%	99	37.4%	5	60%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
IBTK	25998	genome.wustl.edu	37	6	82941445	82941445	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015525.2	-1	reviewed	p.Y178S	1.000	34	0%	120	45%	3	100%	possibly_damaging(0.541)	tolerated(0.87)	neutral(0.184)	superfamily_RCC1/BLIP-II
ZNF292	23036	genome.wustl.edu	37	6	87971363	87971363	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015021.1	+1	validated	p.K2672	1.000	39	0%	52	48.1%	12	50%	-	-	-	NULL
MDN1	23195	genome.wustl.edu	37	6	90418265	90418265	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014611.1	-1	provisional	p.Q2616	0.042	33	0%	147	34%	0	-	-	-	-	NULL
EPHA7	2045	genome.wustl.edu	37	6	93967841	93967841	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004440.3	-1	reviewed	p.H696N	1.000	60	0%	160	43.1%	2	100%	possibly_damaging(0.786)	deleterious(0)	deleterious(0.739)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
POU3F2	5454	genome.wustl.edu	37	6	99283852	99283852	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005604.2	+1	validated	p.A368V	1.000	20	0%	52	38.5%	0	-	benign(0.32)	tolerated(0.16)	neutral(0.160)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
HACE1	57531	genome.wustl.edu	37	6	105232942	105232942	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020771.3	-1	validated	p.D443Y	1.000	33	0%	138	47.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
AIM1	202	genome.wustl.edu	37	6	106969219	106969219	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001624.2	+1	validated	p.S971*	0.033	60	0%	106	39.6%	0	-	-	-	-	NULL
SEC63	11231	genome.wustl.edu	37	6	108214773	108214773	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000423697	-1	known	p.E389*	1.000	121	0%	439	37.1%	4	25%	-	-	-	HMMPfam_Sec63,HMMSmart_SM00611
ARMC2	84071	genome.wustl.edu	37	6	109294665	109294665	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032131.4	+1	validated	p.R851Q	0.659	55	0%	115	40.9%	6	66.6%	probably_damaging(0.992)	tolerated(0.08)	deleterious(0.748)	superfamily_ARM-type_fold
PPIL6	285755	genome.wustl.edu	37	6	109748351	109748351	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000417394	-1	known	p.R91C	1.000	150	0%	211	40.3%	12	0%	-	-	-	HMMPfam_Pro_isomerase,superfamily_Cyclophilin-like
AKD1	221264	genome.wustl.edu	37	6	109867219	109867219	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000424296	-1	known	p.L105I	1.000	32	0%	126	31%	0	-	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	superfamily_SSF52540
FIG4	9896	genome.wustl.edu	37	6	110036282	110036282	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014845.5	+1	reviewed	p.R23I	1.000	108	0%	202	33.2%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLC16A10	117247	genome.wustl.edu	37	6	111498656	111498656	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018593.4	+1	validated	p.L244I	1.000	47	0%	149	36.2%	0	-	benign(0.057)	tolerated(0.31)	neutral(0.030)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
REV3L	5980	genome.wustl.edu	37	6	111680076	111680076	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002912.3	-1	validated	p.E2341*	1.000	29	0%	189	39.7%	1	0%	-	-	-	HMMSmart_SM00486,superfamily_Ribonuclease H-like
LAMA4	3910	genome.wustl.edu	37	6	112438973	112438973	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105206.1	-1	reviewed	p.Y1650*	1.000	39	0%	108	47.2%	6	0%	-	-	-	superfamily_Concanavalin A-like lectins/glucanases
LAMA4	3910	genome.wustl.edu	37	6	112441659	112441659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105206.1	-1	reviewed	p.R1498C	1.000	34	0%	77	36.4%	4	50%	probably_damaging(0.997)	tolerated(0.08)	deleterious(0.766)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases
COL10A1	1300	genome.wustl.edu	37	6	116441557	116441557	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000493.3	-1	reviewed	p.I574M	0.807	27	0%	102	43.1%	0	-	probably_damaging(0.967)	deleterious(0.02)	deleterious(0.792)	HMMPfam_C1q,HMMSmart_SM00110,superfamily_TNF-like
FAM26E	254228	genome.wustl.edu	37	6	116837113	116837113	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153711.2	+1	validated	p.E297	1.000	17	0%	33	42.4%	0	-	-	-	-	NULL
ROS1	6098	genome.wustl.edu	37	6	117715410	117715410	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002944.2	-1	reviewed	p.R360I	0.180	35	0%	60	33.3%	0	-	possibly_damaging(0.84)	tolerated(0.21)	neutral(0.365)	HMMSmart_LY,superfamily_SSF63825
DCBLD1	285761	genome.wustl.edu	37	6	117841011	117841011	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173674.1	+1	provisional	p.E120*	0.974	43	0%	167	42.5%	2	50%	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
TRDN	10345	genome.wustl.edu	37	6	123869741	123869741	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006073.2	-1	validated	p.K83	1.000	24	0%	71	45.1%	0	-	-	-	-	HMMPfam_Triadin
NCOA7	135112	genome.wustl.edu	37	6	126210307	126210307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181782.3	+1	validated	p.E369D	0.000	33	0%	42	42.9%	0	-	benign(0)	tolerated(0.3)	neutral(0.029)	NULL
LAMA2	3908	genome.wustl.edu	37	6	129371193	129371193	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000426.3	+1	reviewed	p.P81	0.020	64	0%	256	46.5%	0	-	-	-	-	HMMPfam_Laminin_N,HMMSmart_LamNT,superfamily_Gal_bind_like
LAMA2	3908	genome.wustl.edu	37	6	129381025	129381025	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000426.3	+1	reviewed	p.T127I	0.998	58	0%	175	36%	0	-	possibly_damaging(0.835)	deleterious(0)	deleterious(0.763)	HMMPfam_Laminin_N,HMMSmart_LamNT,superfamily_Gal_bind_like
LAMA2	3908	genome.wustl.edu	37	6	129419352	129419352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000426.3	+1	reviewed	p.A144V	0.998	9	0.000	78	0.526	0	-	probably_damaging(0.972)	deleterious(0)	deleterious(0.859)	HMMPfam_Laminin_N,HMMSmart_LamNT,superfamily_Gal_bind_like
LAMA2	3908	genome.wustl.edu	37	6	129712756	129712756	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000426.3	+1	reviewed	p.K1731T	1.000	137	0%	259	39%	0	-	benign(0.001)	tolerated(0.12)	neutral(0.261)	superfamily_ConA_like_lec_gl,HMMPfam_Laminin_I
SAMD3	154075	genome.wustl.edu	37	6	130505749	130505749	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017373.2	-1	validated	p.L135I	0.639	35	0%	167	37.1%	0	-	benign(0.047)	tolerated(0.15)	neutral(0.244)	NULL
TAAR1	134864	genome.wustl.edu	37	6	132966569	132966569	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138327.1	-1	provisional	p.V192I	0.000	52	0%	77	39%	1	0%	benign(0.006)	tolerated(0.15)	neutral(0.241)	HMMPfam_7tm_1,superfamily_SSF81321
VNN1	8876	genome.wustl.edu	37	6	133013437	133013437	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004666.2	-1	reviewed	p.E371D	0.998	21	0%	67	41.8%	2	100%	benign(0)	tolerated(0.29)	neutral(0.029)	NULL
TBPL1	9519	genome.wustl.edu	37	6	134305591	134305591	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004865.2	+1	reviewed	p.F120L	1.000	58	0%	112	43.8%	16	37.5%	benign(0.11)	tolerated(0.56)	neutral(0.015)	HMMPfam_TBP,superfamily_TATA-box binding protein-like
HBS1L	10767	genome.wustl.edu	37	6	135307889	135307889	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006620.3	-1	reviewed	p.K430	1.000	94	0%	93	31.2%	8	50%	-	-	-	HMMPfam_GTP_EFTU,superfamily_P-loop containing nucleoside triphosphate hydrolases
HBS1L	10767	genome.wustl.edu	37	6	135358048	135358048	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145207.1	-1	reviewed	p.R516Q	0.604	39	0%	103	44.7%	0	-	benign(0)	tolerated(0.17)	neutral(0.059)	NULL
ECT2L	345930	genome.wustl.edu	37	6	139223733	139223733	+	Missense_Mutation	SNP	G	G	A	rs181439920	by1000genomes	TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077706.1	+1	validated	p.R895Q	0.134	60	0%	161	39.8%	4	0%	benign(0)	tolerated(1)	-	superfamily_SSF50729
REPS1	85021	genome.wustl.edu	37	6	139228653	139228653	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031922.3	-1	validated	p.S766	1.000	109	0%	276	38.4%	58	36.2%	-	-	-	NULL
SF3B5	83443	genome.wustl.edu	37	6	144416487	144416487	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031287.2	-1	validated	p.L50I	1.000	21	0%	54	37%	534	48.1%	benign(0.052)	deleterious(0.01)	neutral(0.409)	HMMPfam_SF3b10
GRM1	2911	genome.wustl.edu	37	6	146747708	146747708	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114329.1	+1	reviewed	p.E892*	1.000	38	0%	96	36.5%	0	-	-	-	-	NULL
C6orf72	116254	genome.wustl.edu	37	6	149893422	149893422	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138785.3	+1	predicted	p.D41A	0.899	100	0%	261	41.8%	13	53.8%	possibly_damaging(0.896)	deleterious(0.04)	deleterious(0.702)	NULL
AKAP12	9590	genome.wustl.edu	37	6	151673794	151673794	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005100.3	+1	reviewed	p.A1423V	0.027	36	0%	78	34.6%	2	50%	benign(0.004)	deleterious(0)	neutral(0.445)	NULL
SYNE1	23345	genome.wustl.edu	37	6	152565761	152565761	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.E6535*	1.000	44	0%	205	38.5%	0	-	-	-	-	superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152765652	152765652	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.S1244Y	1.000	86	0%	215	34.9%	0	-	possibly_damaging(0.712)	deleterious(0.02)	deleterious(0.641)	NULL
TULP4	56995	genome.wustl.edu	37	6	158910717	158910717	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020245.3	+1	validated	p.K528N	1.000	60	0%	192	36.5%	2	0%	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	NULL
PDE10A	10846	genome.wustl.edu	37	6	165756987	165756987	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130690.1	-1	validated	p.R664C	1.000	34	0%	84	44%	0	-	possibly_damaging(0.887)	deleterious(0.02)	deleterious(0.730)	HMMPfam_PDEase_I,HMMSmart_HDc,superfamily_SSF109604
LOC100132858	100132858	genome.wustl.edu	37	7	19850	19850	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001715131.2	-1	model	p.K378T	0.030	83	0%	249	18.5%	0	-	-	-	-	NULL
LOC100290924	100290924	genome.wustl.edu	37	7	796586	796586	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002346938.1	-1	model	p.D6N	0.011	19	0%	28	25%	36	41.6%	-	-	-	PatternScan_ZINC_FINGER_C2H2_1
RSPH10B2	728194	genome.wustl.edu	37	7	6819348	6819348	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099697.1	+1	provisional	p.E508*	1.000	202	0%	485	21.9%	0	-	-	-	-	NULL
DGKB	1607	genome.wustl.edu	37	7	14775684	14775684	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004080.2	-1	reviewed	p.P102S	1.000	31	0%	62	48.4%	0	-	benign(0)	tolerated(0.54)	neutral(0.007)	superfamily_EF-hand
ABCB5	340273	genome.wustl.edu	37	7	20683096	20683096	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000404938	+1	known	p.K173N	1.000	74	0%	190	38.4%	0	-	possibly_damaging(0.819)	deleterious(0)	deleterious(0.754)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
DNAH11	8701	genome.wustl.edu	37	7	21598550	21598550	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003777.3	+1	reviewed	p.R209I	1.000	76	0%	71	38%	1	0%	probably_damaging(0.983)	deleterious(0.02)	deleterious(0.812)	NULL
DNAH11	8701	genome.wustl.edu	37	7	21654749	21654749	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003777.3	+1	reviewed	p.E1290	0.911	45	0%	173	43.4%	5	40%	-	-	-	NULL
ENSG00000105889	0	genome.wustl.edu	37	7	22532348	22532348	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000441815	-1	known	p.V347L	1.000	133	0%	359	32.6%	2	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
ENSG00000105889	0	genome.wustl.edu	37	7	22534400	22534400	+	Silent	SNP	G	G	A	rs186012263	by1000genomes	TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000441815	-1	known	p.N172	0.640	424	0%	598	37.8%	0	-	-	-	-	NULL
NUPL2	11097	genome.wustl.edu	37	7	23236315	23236315	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007342.2	+1	validated	p.R180H	1.000	168	0%	283	40.6%	19	47.3%	benign(0.149)	deleterious(0.02)	neutral(0.396)	NULL
IGF2BP3	10643	genome.wustl.edu	37	7	23353250	23353250	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006547.2	-1	reviewed	p.K473T	1.000	145	0%	246	35.8%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00322,superfamily_Eukaryotic type KH-domain (KH-domain type I)
CYCS	54205	genome.wustl.edu	37	7	25163357	25163357	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018947.4	-1	reviewed	p.D94A	1.000	53	0%	88	46.6%	86	48.8%	benign(0.036)	deleterious(0)	neutral(0.447)	HMMPfam_Cytochrom_C,superfamily_Cytochrome c
CHN2	1124	genome.wustl.edu	37	7	29519910	29519910	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004067.2	+1	reviewed	p.R198*	0.997	75	0%	246	33.3%	1	0%	-	-	-	superfamily_Cysteine-rich domain
LOC100287825	100287825	genome.wustl.edu	37	7	30564103	30564103	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342697.1	-1	model	e2-1	0.005	10	0%	43	44.2%	0	-	-	-	-	-
CCDC129	223075	genome.wustl.edu	37	7	31692201	31692201	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194300.2	+1	validated	p.E965*	0.998	19	0%	32	37.5%	4	75%	-	-	-	NULL
TRGV9	6983	genome.wustl.edu	37	7	38356829	38356829	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000444775	-1	known	p.A52V	0.003	18	0%	125	36%	1	0%	benign(0)	tolerated(0.07)	neutral(0.319)	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726
GLI3	2737	genome.wustl.edu	37	7	42063091	42063091	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000168.5	-1	reviewed	p.F491	0.997	30	0%	149	38.3%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ABCA13	154664	genome.wustl.edu	37	7	48313418	48313418	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152701.3	+1	reviewed	p.E1385D	0.007	53	0%	115	40%	0	-	benign(0.404)	-	-	NULL
ZPBP	11055	genome.wustl.edu	37	7	50121488	50121488	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007009.2	-1	validated	p.A72	0.765	28	0%	109	50.5%	0	-	-	-	-	NULL
IKZF1	10320	genome.wustl.edu	37	7	50444306	50444306	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000331340	+1	known	p.A79V	1.000	64	0%	182	39.6%	0	-	probably_damaging(1)	tolerated(0.25)	deleterious(0.537)	NULL
LANCL2	55915	genome.wustl.edu	37	7	55499001	55499001	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018697.3	+1	validated	p.S447	0.002	45	0%	65	35.4%	24	33.3%	-	-	-	NULL
ZNF117	51351	genome.wustl.edu	37	7	64439218	64439218	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015852.3	-1	validated	p.T244I	0.998	65	0%	156	41.7%	1	0%	possibly_damaging(0.582)	deleterious(0.03)	deleterious(0.565)	superfamily_C2H2 and C2HC zinc fingers
ZNF92	168374	genome.wustl.edu	37	7	64863308	64863308	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152626.2	+1	validated	p.S94Y	0.062	101	0%	151	46.4%	2	100%	benign(0.03)	tolerated(0.08)	neutral(0.301)	NULL
VKORC1L1	154807	genome.wustl.edu	37	7	65419353	65419354	+	In_Frame_Ins	INS	-	-	TTA	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000434382	+1	known	p.167in_frame_insI	0.994:0.999	-	-	-	-	-	-	-	-	-	NULL
ELN	2006	genome.wustl.edu	37	7	73480061	73480061	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000501.2	+1	reviewed	p.Y677*	0.938	26	0%	69	43.5%	7	28.5%	-	-	-	NULL
PTPN12	5782	genome.wustl.edu	37	7	77230111	77230111	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002835.3	+1	reviewed	p.C228F	1.000	51	0%	135	39.3%	18	72.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
RSBN1L	222194	genome.wustl.edu	37	7	77379139	77379139	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198467.2	+1	validated	p.E368K	0.999	76	0%	131	41.2%	2	0%	probably_damaging(0.953)	deleterious(0.01)	deleterious(0.802)	NULL
PCLO	27445	genome.wustl.edu	37	7	82582323	82582323	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033026.5	-1	validated	p.S2649Y	0.000	44	0%	58	27.6%	0	-	probably_damaging(0.961)	-	-	NULL
SEMA3D	223117	genome.wustl.edu	37	7	84636126	84636126	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152754.2	-1	validated	p.R634*	0.994	45	0%	101	47.5%	5	40%	-	-	-	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
KIAA1324L	222223	genome.wustl.edu	37	7	86522240	86522240	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142749.2	-1	validated	p.Q954H	0.996	33	0%	64	32.8%	0	-	possibly_damaging(0.843)	deleterious(0.02)	deleterious(0.706)	NULL
SLC25A40	55972	genome.wustl.edu	37	7	87465581	87465581	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018843.2	-1	validated	p.R334*	0.000	22	0%	54	50%	8	37.5%	-	-	-	NULL
AKAP9	10142	genome.wustl.edu	37	7	91706314	91706314	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005751.4	+1	reviewed	p.L2253*	1.000	81	0%	80	42.5%	0	-	-	-	-	NULL
AKAP9	10142	genome.wustl.edu	37	7	91709179	91709179	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005751.4	+1	reviewed	p.S2578P	0.416	70	0%	100	41%	0	-	probably_damaging(0.995)	tolerated(0.07)	deleterious(0.776)	NULL
ENSG00000240720	0	genome.wustl.edu	37	7	91793345	91793345	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000430130	-1	known	p.I391T	0.999	97	0%	107	39.3%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00369,superfamily_L domain-like
PEX1	5189	genome.wustl.edu	37	7	92116800	92116800	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000466.2	-1	reviewed	p.R1275*	1.000	191	0.5%	236	39.8%	9	77.7%	-	-	-	NULL
PEX1	5189	genome.wustl.edu	37	7	92147524	92147524	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000466.2	-1	reviewed	p.R135*	1.000	89	0%	127	48.8%	2	100%	-	-	-	superfamily_ADC-like,HMMPfam_PEX-1N
SAMD9	54809	genome.wustl.edu	37	7	92731410	92731410	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017654.2	-1	validated	p.R1334I	0.000	62	0%	133	41.4%	0	-	possibly_damaging(0.677)	deleterious(0.02)	deleterious(0.624)	NULL
PEG10	23089	genome.wustl.edu	37	7	94293228	94293228	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040152.1	+1	reviewed	p.F120	1.000	30	0%	31	35.5%	0	-	-	-	-	HMMPfam_Retrotrans_gag
PON1	5444	genome.wustl.edu	37	7	94928407	94928407	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000446.5	-1	reviewed	p.R306Q	0.462	16	0%	51	43.1%	0	-	possibly_damaging(0.716)	tolerated(0.1)	deleterious(0.545)	superfamily_Calcium-dependent phosphotriesterase
ZNF3	7551	genome.wustl.edu	37	7	99668944	99668944	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032924.3	-1	validated	p.R388I	1.000	81	0%	192	36.5%	30	53.3%	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
GAL3ST4	79690	genome.wustl.edu	37	7	99758505	99758505	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024637.4	-1	reviewed	p.F169L	1.000	35	0%	30	33.3%	2	0%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_Gal-3-0_sulfotr
FBXO24	26261	genome.wustl.edu	37	7	100189426	100189426	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033506.2	+1	reviewed	p.G153	0.996	17	0%	69	39.1%	2	50%	-	-	-	NULL
MUC12	10071	genome.wustl.edu	37	7	100635842	100635842	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000379442	+1	known	p.S809R	0.002	105	0%	310	39.7%	0	-	possibly_damaging(0.539)	-	-	NULL
FAM185A	222234	genome.wustl.edu	37	7	102389710	102389710	+	Missense_Mutation	SNP	A	A	T	rs147397718	by1000genomes	TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145268.1	+1	validated	p.Q19L	0.000	9	0.000	14	0.500	10	50%	possibly_damaging(0.741)	-	-	NULL
LRRC17	10234	genome.wustl.edu	37	7	102579989	102579989	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031692.2	+1	validated	p.K295N	1.000	62	0%	130	48.5%	10	70%	possibly_damaging(0.471)	deleterious(0.01)	deleterious(0.561)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_RNI-like
KCND2	3751	genome.wustl.edu	37	7	119915653	119915653	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012281.2	+1	reviewed	p.E323*	1.000	50	0%	84	42.9%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
C7orf58	79974	genome.wustl.edu	37	7	120911368	120911368	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024913.4	+1	validated	p.L918V	0.000	70	0%	81	48.1%	0	-	benign(0.001)	tolerated(0.47)	neutral(0.011)	NULL
PTPRZ1	5803	genome.wustl.edu	37	7	121653490	121653490	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002851.2	+1	reviewed	p.N1464D	0.001	46	0%	66	31.8%	0	-	benign(0.001)	deleterious(0.03)	neutral(0.364)	NULL
ASB15	142685	genome.wustl.edu	37	7	123256274	123256274	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080928.3	+1	validated	e2-1	0.998	88	1.1%	174	28.2%	0	-	-	-	-	-
SND1	27044	genome.wustl.edu	37	7	127347644	127347644	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014390.2	+1	validated	p.R327S	1.000	23	0%	86	33.7%	121	47.9%	benign(0.054)	deleterious(0.01)	neutral(0.409)	HMMPfam_SNase,HMMSmart_SNc,superfamily_Staphylococal_nuclease_OB-fold
AGBL3	340351	genome.wustl.edu	37	7	134717605	134717605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000455283	+1	known	p.A144T	0.860	50	0%	192	34.4%	0	-	-	-	-	NULL
AGBL3	340351	genome.wustl.edu	37	7	134730587	134730587	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178563.3	+1	provisional	p.R589I	0.912	59	0%	84	40.5%	0	-	possibly_damaging(0.893)	tolerated(0.13)	deleterious(0.605)	NULL
AGK	55750	genome.wustl.edu	37	7	141255292	141255292	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018238.3	+1	validated	p.R9Q	1.000	28	0%	84	38.1%	2	50%	probably_damaging(0.963)	deleterious(0)	deleterious(0.850)	NULL
TRBV3-1	28619	genome.wustl.edu	37	7	142008441	142008441	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390387	+1	known	p.V10	0.197	28	0%	86	37.2%	0	-	-	-	-	NULL
TRBV5-5	28610	genome.wustl.edu	37	7	142149061	142149061	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390372	-1	known	p.E70	0.000	57	0%	196	33.7%	0	-	-	-	-	HMMPfam_V-set,superfamily_Immunoglobulin
TRBV10-2	28584	genome.wustl.edu	37	7	142206654	142206654	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000426318	-1	known	p.Y67*	0.229	19	0%	86	32.6%	0	-	-	-	-	HMMPfam_V-set,superfamily_SSF48726
TRPV5	56302	genome.wustl.edu	37	7	142611856	142611856	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019841.4	-1	reviewed	p.M491I	1.000	40	0%	80	35%	0	-	benign(0.017)	tolerated(0.17)	neutral(0.059)	HMMPfam_Ion_trans
KEL	3792	genome.wustl.edu	37	7	142658106	142658106	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000420.2	-1	reviewed	p.F103L	1.000	56	0%	145	37.2%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	"HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (""zincins"") catalytic domain"
CTAGE6P	340307	genome.wustl.edu	37	7	143454270	143454270	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178561.4	-1	validated	p.S161Y	0.150	213	0%	411	9.2%	0	-	-	-	-	NULL
NOBOX	135935	genome.wustl.edu	37	7	144097386	144097386	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080413.2	-1	provisional	p.E288D	0.904	35	0%	122	43.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
EZH2	2146	genome.wustl.edu	37	7	148524263	148524263	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004456.3	-1	reviewed	p.K241Q	1.000	71	0%	191	39.3%	2	50%	probably_damaging(0.987)	tolerated(0.06)	deleterious(0.759)	HMMSmart_SANT
LOC100288724	100288724	genome.wustl.edu	37	7	150311343	150311343	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342806.1	-1	model	p.C173W	1.000	30	0%	55	30.9%	0	-	-	-	-	NULL
TMEM176A	55365	genome.wustl.edu	37	7	150500787	150500787	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018487.2	+1	validated	p.R141Q	0.000	23	0%	57	38.6%	39	12.8%	possibly_damaging(0.515)	tolerated(0.59)	neutral(0.178)	HMMPfam_LR8
SMARCD3	6604	genome.wustl.edu	37	7	150945617	150945617	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003801.1	-1	reviewed	p.R11H	1.000	7	0.000	49	0.449	0	-	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	NULL
DPP6	1804	genome.wustl.edu	37	7	154237627	154237627	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000377770	+1	known	p.F156L	1.000	74	0%	111	38.7%	0	-	benign(0.001)	tolerated(0.8)	neutral(0.001)	superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain
PAXIP1	22976	genome.wustl.edu	37	7	154790426	154790426	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007349.3	-1	reviewed	p.I50	0.992	42	0%	99	38.4%	1	0%	-	-	-	HMMPfam_BRCT,superfamily_BRCT domain
RNF32	140545	genome.wustl.edu	37	7	156450917	156450917	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030936.2	+1	reviewed	p.A182	0.024	54	0%	111	39.6%	3	0%	-	-	-	NULL
DLGAP2	9228	genome.wustl.edu	37	8	1497519	1497519	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004745.3	+1	reviewed	p.D220	0.989	12	0%	11	72.7%	0	-	-	-	-	NULL
CSMD1	64478	genome.wustl.edu	37	8	2808763	2808763	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033225.5	-1	validated	p.W3359C	1.000	27	0%	73	31.5%	0	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
CSMD1	64478	genome.wustl.edu	37	8	3165982	3165982	+	Silent	SNP	G	G	A	rs146926975	by1000genomes	TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033225.5	-1	validated	p.Y1226	0.998	23	0%	92	40.2%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
DEFB104A	140596	genome.wustl.edu	37	8	7698671	7698671	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080389.2	+1	reviewed	p.C58	0.555	180	0%	695	16.5%	0	-	-	-	-	NULL
EFHA2	286097	genome.wustl.edu	37	8	16921653	16921653	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181723.2	+1	validated	p.R148*	0.934	44	0%	186	40.9%	0	-	-	-	-	NULL
MTUS1	57509	genome.wustl.edu	37	8	17611329	17611329	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001924.2	-1	reviewed	p.S663N	0.996	153	0%	365	38.9%	3	33.3%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	NULL
PSD3	23362	genome.wustl.edu	37	8	18658818	18658818	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015310.3	-1	validated	p.R662I	1.000	93	0%	135	40%	3	33.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Sec7,HMMSmart_Sec7,superfamily_Sec7
CSGALNACT1	55790	genome.wustl.edu	37	8	19276238	19276238	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130518.1	-1	validated	p.L386I	1.000	53	0%	105	34.3%	2	0%	probably_damaging(0.998)	tolerated(0.22)	deleterious(0.516)	HMMPfam_CHGN,superfamily_SSF53448
TNFRSF10B	8795	genome.wustl.edu	37	8	22879978	22879978	+	RNA	SNP	T	T	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_027140.1	-1	reviewed	NULL	0.000	7	0.000	6	0.667	22	45.4%	-	-	-	-
FBXO16	157574	genome.wustl.edu	37	8	28286250	28286250	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172366.2	-1	reviewed	p.C291	0.872	78	1.3%	127	37.8%	26	46.1%	possibly_damaging(0.801)	deleterious(0.03)	deleterious(0.666)	NULL
TEX15	56154	genome.wustl.edu	37	8	30701305	30701305	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031271.3	-1	validated	p.F1743L	1.000	66	0%	130	31.5%	0	-	benign(0.296)	tolerated(0.17)	neutral(0.150)	NULL
TEX15	56154	genome.wustl.edu	37	8	30704068	30704068	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031271.3	-1	validated	p.I822M	0.000	69	0%	85	50.6%	0	-	benign(0.057)	tolerated(0.93)	neutral(0.004)	NULL
PURG	29942	genome.wustl.edu	37	8	30889403	30889403	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013357.2	-1	reviewed	p.T299N	1.000	66	0%	169	33.1%	0	-	benign(0.023)	deleterious(0.01)	neutral(0.407)	HMMPfam_PurA,HMMSmart_SM00712
AGPAT6	137964	genome.wustl.edu	37	8	41469477	41469477	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178819.3	+1	validated	p.R223*	1.000	44	0%	135	37%	34	14.7%	-	-	-	NULL
KAT6A	7994	genome.wustl.edu	37	8	41791030	41791030	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099412.1	-1	validated	p.D1570N	1.000	31	0%	69	53.6%	6	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
AP3M2	10947	genome.wustl.edu	37	8	42026560	42026560	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134296.1	+1	reviewed	p.K413T	1.000	78	0%	171	39.8%	4	75%	possibly_damaging(0.594)	tolerated(0.05)	deleterious(0.550)	HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
ENSG00000215179	0	genome.wustl.edu	37	8	47885758	47885758	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000399732	-1	known	p.D159Y	1.000	37	0%	83	42.2%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PRKDC	5591	genome.wustl.edu	37	8	48740754	48740754	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000314191	-1	known	p.F2850C	1.000	130	0%	262	43.9%	4	50%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	superfamily_ARM repeat
UBXN2B	137886	genome.wustl.edu	37	8	59347023	59347023	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077619.1	+1	validated	p.E165*	1.000	77	0%	158	38%	3	0%	-	-	-	HMMPfam_SEP,HMMSmart_SEP,superfamily_SEP
MYBL1	4603	genome.wustl.edu	37	8	67513988	67513988	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080416.2	-1	validated	p.K48T	1.000	99	0%	179	34.6%	0	-	benign(0.047)	deleterious(0)	neutral(0.448)	HMMSmart_SANT,superfamily_Homeodomain_like,HMMPfam_Myb_DNA-binding
CPA6	57094	genome.wustl.edu	37	8	68340315	68340315	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020361.4	-1	validated	p.R365*	0.000	28	0%	119	33.6%	1	0%	-	-	-	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
LOC392232	392232	genome.wustl.edu	37	8	73126438	73126438	+	RNA	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_037363.2	-1	model	NULL	0.455	34	0%	41	43.9%	0	-	-	-	-	-
LY96	23643	genome.wustl.edu	37	8	74939065	74939065	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015364.3	+1	validated	p.K125Q	0.000	254	0%	293	39.6%	3	0%	benign(0.173)	tolerated(0.32)	neutral(0.040)	HMMPfam_E1_DerP2_DerF2,HMMSmart_SM00737
ZFHX4	79776	genome.wustl.edu	37	8	77763816	77763816	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024721.4	+1	validated	p.K1508N	1.000	33	0%	34	17.6%	0	-	benign(0.189)	-	-	HMMSmart_SM00451,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZFHX4	79776	genome.wustl.edu	37	8	77765615	77765615	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024721.4	+1	validated	p.S2108Y	1.000	45	0%	90	46.7%	0	-	probably_damaging(0.959)	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
ZFHX4	79776	genome.wustl.edu	37	8	77767078	77767078	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024721.4	+1	validated	p.E2596K	1.000	39	0%	28	42.9%	0	-	possibly_damaging(0.702)	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1
SLC10A5	347051	genome.wustl.edu	37	8	82606447	82606447	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010893.2	-1	validated	p.S254Y	0.999	39	0%	65	40%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_SBF
PSKH2	85481	genome.wustl.edu	37	8	87076851	87076851	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033126.1	-1	provisional	p.I65	1.000	19	0%	39	46.2%	0	-	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
DCAF4L2	138009	genome.wustl.edu	37	8	88885469	88885469	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152418.3	-1	validated	p.R244H	0.985	42	0%	143	43.4%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_WD40_like
VPS13B	157680	genome.wustl.edu	37	8	100128027	100128027	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017890.3	+1	reviewed	p.E288*	1.000	81	0%	129	39.5%	0	-	-	-	-	NULL
FBXO43	286151	genome.wustl.edu	37	8	101153197	101153197	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029860.2	-1	validated	p.D429Y	0.001	62	0%	160	38.8%	1	0%	possibly_damaging(0.624)	tolerated(0.1)	deleterious(0.504)	NULL
PABPC1	26986	genome.wustl.edu	37	8	101727818	101727818	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002568.3	-1	validated	p.R172Q	1.000	51	0%	173	33.5%	238	40.7%	benign(0.003)	tolerated(0.32)	neutral(0.024)	superfamily_RNA-binding domain RBD
KLF10	7071	genome.wustl.edu	37	8	103664009	103664009	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005655.2	-1	validated	p.S184Y	0.001	38	0%	111	38.7%	36	47.2%	benign(0.313)	tolerated(0.1)	neutral(0.384)	NULL
BAALC	79870	genome.wustl.edu	37	8	104240298	104240298	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024812.2	+1	reviewed	p.R137*	0.985	37	0%	120	41.7%	2	100%	-	-	-	NULL
FZD6	8323	genome.wustl.edu	37	8	104340629	104340629	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003506.3	+1	reviewed	p.R509Q	1.000	72	0%	197	41.6%	27	25.9%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Frizzled
RIMS2	9699	genome.wustl.edu	37	8	104897942	104897942	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100117.1	+1	validated	p.S372Y	1.000	41	0%	28	50%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
RIMS2	9699	genome.wustl.edu	37	8	104898011	104898011	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100117.1	+1	validated	p.R395I	1.000	33	0%	23	39.1%	0	-	possibly_damaging(0.632)	tolerated(0.41)	neutral(0.236)	NULL
ABRA	137735	genome.wustl.edu	37	8	107782101	107782101	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139166.4	-1	validated	p.K106N	1.000	109	0%	188	38.8%	0	-	benign(0.014)	tolerated(0.23)	neutral(0.042)	NULL
PKHD1L1	93035	genome.wustl.edu	37	8	110534511	110534511	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177531.4	+1	validated	p.S4043L	1.000	37	0%	50	40%	22	22.7%	benign(0.003)	tolerated(0.27)	neutral(0.034)	NULL
SLC30A8	169026	genome.wustl.edu	37	8	118170071	118170071	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173851.2	+1	reviewed	p.A187V	0.946	71	0%	189	38.6%	0	-	benign(0)	tolerated(0.76)	neutral(0.001)	HMMPfam_Cation_efflux
HAS2	3037	genome.wustl.edu	37	8	122641314	122641314	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005328.2	-1	reviewed	p.I89	0.974	87	1.1%	382	36.6%	0	-	-	-	-	HMMPfam_Glycos_transf_2,superfamily_SSF53448
RNF139	11236	genome.wustl.edu	37	8	125498947	125498947	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007218.3	+1	reviewed	p.S353R	1.000	45	0%	184	40.8%	28	32.1%	possibly_damaging(0.749)	tolerated(0.08)	deleterious(0.575)	NULL
ZNF572	137209	genome.wustl.edu	37	8	125989168	125989168	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152412.2	+1	validated	p.E220K	0.791	49	0%	47	31.9%	3	66.6%	possibly_damaging(0.862)	tolerated(0.1)	deleterious(0.619)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF572	137209	genome.wustl.edu	37	8	125989653	125989653	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152412.2	+1	validated	p.E381D	0.999	103	0%	128	32.8%	2	0%	possibly_damaging(0.827)	deleterious(0.01)	deleterious(0.720)	superfamily_SSF57667
TG	7038	genome.wustl.edu	37	8	134145835	134145835	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003235.4	+1	reviewed	p.R2707*	0.010	56	0%	179	40.8%	0	-	-	-	-	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases
FAM135B	51059	genome.wustl.edu	37	8	139160913	139160913	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015912.3	-1	validated	p.E1100*	1.000	61	0%	116	39.7%	0	-	-	-	-	NULL
FAM135B	51059	genome.wustl.edu	37	8	139164409	139164409	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015912.3	-1	validated	p.S770F	1.000	19	0%	28	25%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ZNF623	9831	genome.wustl.edu	37	8	144733142	144733142	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014789.3	+1	validated	p.R367I	0.201	61	0%	129	40.3%	3	33.3%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
EPPK1	83481	genome.wustl.edu	37	8	144944489	144944489	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031308.1	-1	validated	p.S978N	0.007	4	0.000	6	0.833	2	100%	benign(0.021)	tolerated(0.22)	neutral(0.043)	HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Plakin repeat
ZNF252	286101	genome.wustl.edu	37	8	146202106	146202106	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000355436	-1	known	p.R581I	0.317	51	0%	66	31.8%	9	33.3%	possibly_damaging(0.95)	deleterious(0)	deleterious(0.838)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF252	286101	genome.wustl.edu	37	8	146202610	146202610	+	Missense_Mutation	SNP	C	C	A	rs143500651	by1000genomes	TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000355436	-1	known	p.R434I	0.999	53	0%	48	41.7%	3	33.3%	benign(0.002)	deleterious(0)	neutral(0.445)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
RFX3	5991	genome.wustl.edu	37	9	3225258	3225258	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_134428.1	-1	reviewed	p.S678R	1.000	49	0%	116	46.6%	18	27.7%	probably_damaging(0.956)	deleterious(0.02)	deleterious(0.782)	NULL
RCL1	10171	genome.wustl.edu	37	9	4834227	4834227	+	Silent	SNP	C	C	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005772.3	+1	validated	p.L182	1.000	35	0%	100	45%	21	57.1%	-	-	-	HMMPfam_RTC,superfamily_RNA3apos_cycl/enolpyr_transf_A/B
KIAA1432	57589	genome.wustl.edu	37	9	5753648	5753648	+	Splice_Site	SNP	T	T	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020829.2	+1	validated	e13+2	1.000	62	0%	203	45.8%	0	-	-	-	-	-
GLDC	2731	genome.wustl.edu	37	9	6592193	6592193	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000170.2	-1	reviewed	p.E478*	1.000	64	0%	111	34.2%	0	-	-	-	-	superfamily_PyrdxlP-dep_Trfase_major,HMMPfam_GDC-P
FREM1	158326	genome.wustl.edu	37	9	14746978	14746978	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144966.5	-1	reviewed	p.I2027	0.093	23	0%	71	47.9%	11	36.3%	-	-	-	NULL
C9orf93	203238	genome.wustl.edu	37	9	15594150	15594150	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173550.2	+1	predicted	p.E219*	1.000	231	0%	169	37.3%	0	-	-	-	-	NULL
CNTLN	54875	genome.wustl.edu	37	9	17342366	17342366	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017738.2	+1	validated	p.R604*	0.946	61	0%	81	44.4%	0	-	-	-	-	NULL
CNTLN	54875	genome.wustl.edu	37	9	17416079	17416079	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017738.2	+1	validated	p.K1002N	0.994	58	0%	64	43.8%	0	-	possibly_damaging(0.889)	deleterious(0.05)	deleterious(0.695)	NULL
RRAGA	10670	genome.wustl.edu	37	9	19050248	19050248	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006570.4	+1	validated	p.I197	0.997	32	0%	100	31%	82	4.8%	-	-	-	HMMPfam_Gtr1_RagA,superfamily_P-loop containing nucleoside triphosphate hydrolases
IFNA6	3443	genome.wustl.edu	37	9	21350375	21350375	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021002.2	-1	validated	p.I171S	0.174	80	0%	258	43.8%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Interferon,HMMSmart_SM00076,superfamily_4-helical cytokines
LOC402360	402360	genome.wustl.edu	37	9	23682022	23682022	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342894.1	+1	model	p.I43N	0.800	11	0%	24	29.2%	0	-	-	-	-	HMMPfam_Nop,superfamily_Nop domain
IFT74	80173	genome.wustl.edu	37	9	26962017	26962017	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099222.1	+1	validated	p.V18I	1.000	23	0%	95	30.5%	5	100%	benign(0.001)	tolerated(0.62)	neutral(0.004)	NULL
TEK	7010	genome.wustl.edu	37	9	27209157	27209157	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000459.3	+1	reviewed	p.E872*	1.000	36	0%	105	49.5%	0	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
LOC100288436	100288436	genome.wustl.edu	37	9	30559018	30559018	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342887.1	-1	model	p.K140N	0.688	139	0.7%	304	33.2%	2	0%	-	-	-	NULL
TRBV25OR9-2	6960	genome.wustl.edu	37	9	33662490	33662490	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000438417	+1	known	p.S56T	0.682	18	0%	75	42.7%	0	-	benign(0.003)	deleterious(0.01)	neutral(0.406)	superfamily_Immunoglobulin
ARID3C	138715	genome.wustl.edu	37	9	34622088	34622088	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017363.1	-1	reviewed	p.P356H	1.000	25	0%	93	36.6%	0	-	possibly_damaging(0.945)	deleterious(0.01)	deleterious(0.795)	NULL
LOC730110	730110	genome.wustl.edu	37	9	35149143	35149143	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342891.1	-1	model	p.F13L	0.159	94	0%	402	42.3%	0	-	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
UNC13B	10497	genome.wustl.edu	37	9	35310774	35310774	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006377.3	+1	reviewed	p.E358K	1.000	49	0%	71	39.4%	0	-	benign(0)	tolerated(0.16)	neutral(0.059)	NULL
TPM2	7169	genome.wustl.edu	37	9	35685536	35685536	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003289.3	-1	reviewed	p.V129	1.000	36	0%	98	33.7%	30	16.6%	-	-	-	HMMPfam_Tropomyosin
ZCCHC7	84186	genome.wustl.edu	37	9	37126366	37126366	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032226.2	+1	validated	p.E13K	1.000	75	0%	283	39.2%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
ZNF658	26149	genome.wustl.edu	37	9	40772822	40772822	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033160.5	-1	validated	p.R818I	1.000	110	0%	274	37.6%	0	-	probably_damaging(0.975)	tolerated(0.23)	neutral(0.458)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF658	26149	genome.wustl.edu	37	9	40774536	40774536	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033160.5	-1	validated	p.E247*	0.704	104	0%	229	44.1%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
FAM75A6	389730	genome.wustl.edu	37	9	43624988	43624988	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145196.1	-1	predicted	p.Q1233H	0.001	24	0%	76	52.6%	0	-	possibly_damaging(0.66)	tolerated(0.14)	deleterious(0.483)	NULL
MAMDC2	256691	genome.wustl.edu	37	9	72758652	72758652	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153267.4	+1	validated	p.E441*	1.000	29	0%	95	45.3%	0	-	-	-	-	HMMPfam_MAM,HMMSmart_SM00137
TRPM3	80036	genome.wustl.edu	37	9	73296482	73296482	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007471.2	-1	reviewed	p.R429W	1.000	70	0%	170	42.9%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
TMC1	117531	genome.wustl.edu	37	9	75387397	75387397	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138691.2	+1	reviewed	p.N270K	1.000	52	0%	252	37.7%	0	-	benign(0)	tolerated(0.9)	-	NULL
TRPM6	140803	genome.wustl.edu	37	9	77376943	77376943	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017662.4	-1	reviewed	p.E1548D	0.985	124	0%	176	51.1%	0	-	unknown(0)	tolerated(0.16)	-	NULL
PCSK5	5125	genome.wustl.edu	37	9	78799597	78799597	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006200.3	+1	reviewed	p.L736I	0.999	25	0%	82	40.2%	0	-	benign(0.016)	tolerated(0.68)	neutral(0.003)	HMMSmart_SM00261,superfamily_Growth factor receptor domain
FAM75D1	389763	genome.wustl.edu	37	9	84608774	84608774	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001670.2	+1	validated	p.R1130I	0.000	23	0%	38	52.6%	0	-	benign(0.014)	deleterious(0.05)	neutral(0.346)	NULL
FRMD3	257019	genome.wustl.edu	37	9	85950475	85950475	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174938.4	-1	validated	p.Q184H	1.000	140	0%	331	44.4%	0	-	benign(0)	deleterious(0.02)	neutral(0.383)	HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295
ECM2	1842	genome.wustl.edu	37	9	95277345	95277345	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001393.2	-1	reviewed	p.K208Q	0.519	63	0%	176	39.2%	0	-	possibly_damaging(0.586)	tolerated(0.2)	neutral(0.251)	NULL
BICD2	23299	genome.wustl.edu	37	9	95480987	95480987	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003800.1	-1	reviewed	p.R647H	1.000	17	0%	51	35.3%	3	33.3%	probably_damaging(1)	tolerated(0.49)	deleterious(0.510)	HMMPfam_BicD
NCBP1	4686	genome.wustl.edu	37	9	100405601	100405601	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002486.4	+1	reviewed	p.E114*	1.000	81	0%	205	40.5%	2	0%	-	-	-	HMMPfam_MIF4G,HMMSmart_MIF4G,superfamily_ARM-type_fold
BAAT	570	genome.wustl.edu	37	9	104124930	104124930	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127610.1	-1	reviewed	p.R346I	0.001	46	0%	114	43.9%	0	-	probably_damaging(0.968)	tolerated(0.06)	deleterious(0.732)	HMMPfam_BAAT_C,superfamily_SSF53474
BAAT	570	genome.wustl.edu	37	9	104133419	104133419	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127610.1	-1	reviewed	p.R90	0.746	49	0%	97	30.9%	0	-	-	-	-	HMMPfam_Bile_Hydr_Trans
ZNF189	7743	genome.wustl.edu	37	9	104170946	104170946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003452.2	+1	validated	p.R299Q	1.000	73	0%	97	38.1%	3	0%	possibly_damaging(0.587)	tolerated(0.36)	neutral(0.223)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF189	7743	genome.wustl.edu	37	9	104171309	104171309	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003452.2	+1	validated	p.R420I	1.000	68	0%	67	47.8%	9	77.7%	benign(0.198)	tolerated(0.11)	neutral(0.291)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF189	7743	genome.wustl.edu	37	9	104171729	104171729	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003452.2	+1	validated	p.R560I	1.000	75	0%	78	38.5%	8	25%	probably_damaging(0.983)	tolerated(0.07)	deleterious(0.748)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
GRIN3A	116443	genome.wustl.edu	37	9	104341524	104341524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133445.2	-1	reviewed	p.R962Q	1.000	50	0%	182	47.3%	0	-	probably_damaging(0.997)	tolerated(0.07)	deleterious(0.785)	NULL
CYLC2	1539	genome.wustl.edu	37	9	105757676	105757676	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001340.3	+1	reviewed	p.R5I	1.000	50	0%	122	38.5%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
TMEM38B	55151	genome.wustl.edu	37	9	108536349	108536349	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018112.1	+1	provisional	p.K288N	1.000	42	0%	47	51.1%	1	0%	benign(0.104)	deleterious(0)	neutral(0.453)	NULL
IKBKAP	8518	genome.wustl.edu	37	9	111663705	111663705	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003640.3	-1	reviewed	p.T672S	0.999	61	0%	113	32.7%	8	12.5%	benign(0.025)	tolerated(1)	neutral(0.001)	HMMPfam_IKI3
SVEP1	79987	genome.wustl.edu	37	9	113170290	113170290	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153366.3	-1	validated	p.L2530	0.000	12	0%	40	45%	3	0%	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
ZNF483	158399	genome.wustl.edu	37	9	114304843	114304843	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133464.2	+1	validated	p.R543Q	0.663	110	0%	120	40.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
WDR31	114987	genome.wustl.edu	37	9	116079127	116079127	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012361.1	-1	reviewed	p.A336T	0.005	39	0%	73	43.8%	6	66.6%	benign(0)	tolerated(0.67)	neutral(0.003)	HMMSmart_SM00320,superfamily_WD40 repeat-like
PSMD5	5711	genome.wustl.edu	37	9	123586959	123586959	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005047.2	-1	reviewed	p.F273	1.000	42	0%	86	33.7%	4	0%	-	-	-	superfamily_ARM-type_fold,HMMPfam_Proteasom_PSMB
C5	727	genome.wustl.edu	37	9	123777519	123777519	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001735.2	-1	reviewed	p.L673I	0.998	232	0%	588	43%	0	-	benign(0)	tolerated(0.5)	neutral(0.010)	NULL
OR1N2	138882	genome.wustl.edu	37	9	125316432	125316432	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004457.1	+1	provisional	p.F328L	0.000	73	0%	162	42.6%	0	-	benign(0)	tolerated(0.13)	neutral(0.253)	NULL
ZBTB6	10773	genome.wustl.edu	37	9	125673960	125673960	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006626.4	-1	provisional	p.L131R	0.994	23	0%	62	35.5%	1	0%	benign(0.031)	deleterious(0.04)	neutral(0.350)	NULL
RALGPS1	9649	genome.wustl.edu	37	9	129815212	129815212	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014636.1	+1	provisional	p.T159	0.996	93	0%	264	37.1%	1	0%	-	-	-	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
CIZ1	25792	genome.wustl.edu	37	9	130943043	130943043	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001131016.1	-1	validated	p.E213D	1.000	22	0%	55	38.2%	8	62.5%	probably_damaging(0.987)	deleterious(0.04)	deleterious(0.785)	NULL
DNM1	1759	genome.wustl.edu	37	9	131008675	131008675	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004408.2	+1	reviewed	p.E558D	1.000	27	0%	95	34.7%	1	100%	benign(0.31)	deleterious(0.03)	neutral(0.461)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
COQ4	51117	genome.wustl.edu	37	9	131095196	131095196	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016035.3	+1	validated	p.F200L	0.962	41	0%	214	31.3%	239	58.9%	benign(0)	tolerated(1)	-	HMMPfam_Coq4
SPTAN1	6709	genome.wustl.edu	37	9	131367411	131367411	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130438.1	+1	validated	p.R1273H	1.000	27	0%	49	38.8%	17	76.4%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
PRDM12	59335	genome.wustl.edu	37	9	133543632	133543632	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021619.2	+1	validated	p.R168C	0.993	39	0%	96	30.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00317,superfamily_SET domain
EXOSC2	23404	genome.wustl.edu	37	9	133579087	133579087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014285.5	+1	validated	p.D270N	1.000	114	0%	244	43%	17	52.9%	benign(0.358)	tolerated(0.13)	neutral(0.366)	NULL
SETX	23064	genome.wustl.edu	37	9	135171322	135171322	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015046.5	-1	reviewed	p.E2015*	1.000	222	0%	366	46.2%	0	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
SETX	23064	genome.wustl.edu	37	9	135173471	135173471	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015046.5	-1	reviewed	p.R1926I	1.000	52	0%	164	38.4%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	superfamily_P-loop containing nucleoside triphosphate hydrolases
SETX	23064	genome.wustl.edu	37	9	135202086	135202086	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015046.5	-1	reviewed	p.S1633	0.000	65	0%	179	34.1%	0	-	-	-	-	NULL
DDX31	64794	genome.wustl.edu	37	9	135493757	135493757	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022779.7	-1	reviewed	p.Y700	0.995	17	0%	65	38.5%	6	33.3%	-	-	-	NULL
C9orf96	169436	genome.wustl.edu	37	9	136263173	136263173	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153710.3	+1	validated	p.D358Y	0.001	14	0%	85	29.4%	0	-	possibly_damaging(0.924)	deleterious(0.03)	deleterious(0.738)	superfamily_ARM repeat
FCN1	2219	genome.wustl.edu	37	9	137801885	137801885	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002003.3	-1	reviewed	p.S247Y	0.975	34	0%	122	30.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
TUBB8	347688	genome.wustl.edu	37	10	93287	93287	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177987.2	-1	validated	p.V349I	1.000	28	0%	91	30.8%	1	100%	benign(0.002)	deleterious(0.03)	neutral(0.364)	superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C
PRKCQ	5588	genome.wustl.edu	37	10	6483862	6483862	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006257.2	-1	reviewed	p.L610P	0.760	21	0%	36	27.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ITIH5	80760	genome.wustl.edu	37	10	7615128	7615128	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030569.5	-1	validated	p.R670I	1.000	91	0%	374	38.2%	7	28.5%	benign(0.016)	tolerated(0.28)	neutral(0.032)	NULL
ECHDC3	79746	genome.wustl.edu	37	10	11791501	11791501	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024693.4	+1	validated	p.G100	0.854	30	0%	120	37.5%	9	22.2%	-	-	-	HMMPfam_ECH,superfamily_ClpP/crotonase
DCLRE1C	64421	genome.wustl.edu	37	10	14970096	14970096	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033855.1	-1	reviewed	p.R279I	0.993	81	0%	253	36.4%	3	33.3%	possibly_damaging(0.91)	tolerated(0.14)	deleterious(0.612)	HMMPfam_DRMBL
FAM171A1	221061	genome.wustl.edu	37	10	15326034	15326034	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010924.1	-1	validated	p.I56	0.997	19	0%	39	41%	5	60%	-	-	-	HMMPfam_UPF0560
CUBN	8029	genome.wustl.edu	37	10	17110271	17110271	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081.3	-1	reviewed	p.E934*	0.002	51	0%	104	35.6%	0	-	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
PTPLA	9200	genome.wustl.edu	37	10	17636234	17636234	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014241.3	-1	reviewed	p.L252I	1.000	64	0%	114	48.2%	2	50%	probably_damaging(0.987)	tolerated(0.1)	deleterious(0.723)	HMMPfam_PTPLA
MRC1	4360	genome.wustl.edu	37	10	17887414	17887414	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009567.1	+1	reviewed	p.N348H	0.524	110	0%	226	42.9%	0	-	possibly_damaging(0.876)	tolerated(0.06)	deleterious(0.663)	NULL
MYO3A	53904	genome.wustl.edu	37	10	26315346	26315346	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017433.4	+1	reviewed	p.E280*	1.000	47	0%	136	38.2%	0	-	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
GAD2	2572	genome.wustl.edu	37	10	26581403	26581403	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000818.2	+1	reviewed	p.G466W	1.000	48	0%	121	42.1%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Pyridoxal_deC,superfamily_PLP-dependent transferases
SVIL	6840	genome.wustl.edu	37	10	29812410	29812410	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021738.2	-1	reviewed	p.N1045H	0.018	78	0%	236	41.1%	2	0%	benign(0.296)	deleterious(0.04)	neutral(0.441)	NULL
MTPAP	55149	genome.wustl.edu	37	10	30611527	30611527	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018109.3	-1	validated	p.E338K	1.000	41	0%	80	37.5%	8	50%	benign(0.399)	deleterious(0.01)	deleterious(0.534)	superfamily_Nucleotidyltransferase
ANKRD30A	91074	genome.wustl.edu	37	10	37454070	37454070	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052997.2	+1	validated	p.S628Y	0.000	179	0%	317	76.7%	0	-	possibly_damaging(0.449)	deleterious(0)	deleterious(0.592)	NULL
ANKRD30A	91074	genome.wustl.edu	37	10	37478455	37478455	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052997.2	+1	validated	p.E772*	0.002	296	0%	288	20.5%	0	-	-	-	-	NULL
ANKRD30A	91074	genome.wustl.edu	37	10	37478465	37478465	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052997.2	+1	validated	p.K775T	0.000	289	0%	293	19.8%	0	-	benign(0.224)	tolerated(0.48)	neutral(0.033)	NULL
ZNF485	220992	genome.wustl.edu	37	10	44112108	44112108	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145312.3	+1	validated	p.R206I	1.000	75	0%	98	40.8%	1	0%	benign(0.179)	tolerated(0.06)	neutral(0.339)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ALOX5	240	genome.wustl.edu	37	10	45878126	45878126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000698.2	+1	reviewed	p.R116C	0.001	16	0%	21	47.6%	1	0%	benign(0.004)	deleterious(0.03)	neutral(0.364)	superfamily_Lipoxygenase
ALOX5	240	genome.wustl.edu	37	10	45924111	45924111	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000698.2	+1	reviewed	p.D294N	0.996	26	0%	82	43.9%	1	0%	benign(0.008)	tolerated(0.15)	neutral(0.241)	HMMPfam_Lipoxygenase,superfamily_Lipoxygenase
FRMPD2	143162	genome.wustl.edu	37	10	49365380	49365380	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001018071.3	-1	reviewed	p.S1305	0.000	139	0%	300	26%	3	0%	-	-	-	NULL
WDFY4	57705	genome.wustl.edu	37	10	50167780	50167780	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000312002	+1	known	p.R1806W	0.991	19	0%	54	40.7%	2	50%	-	-	-	HMMPfam_Beach,superfamily_BEACH domain
PRKG1	5592	genome.wustl.edu	37	10	53564356	53564356	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006258.2	+1	validated	p.V202L	1.000	104	0%	146	41.1%	0	-	benign(0.327)	tolerated(0.08)	neutral(0.402)	HMMPfam_cNMP_binding,HMMSmart_SM00100,superfamily_cAMP-binding domain-like
PCDH15	65217	genome.wustl.edu	37	10	55568512	55568512	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142769.1	-1	reviewed	p.K1771N	0.000	51	0%	216	43.5%	0	-	unknown(0)	deleterious(0)	-	NULL
PCDH15	65217	genome.wustl.edu	37	10	55583046	55583046	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142763.1	-1	reviewed	p.Q1487H	0.043	70	0%	145	40.7%	0	-	benign(0.001)	deleterious(0.01)	neutral(0.406)	NULL
PCDH15	65217	genome.wustl.edu	37	10	55782688	55782688	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142763.1	-1	reviewed	p.E835D	1.000	37	0%	105	45.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDH15	65217	genome.wustl.edu	37	10	55892762	55892762	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142763.1	-1	reviewed	p.S602F	1.000	35	0%	127	36.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
ANK3	288	genome.wustl.edu	37	10	61898785	61898785	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020987.2	-1	reviewed	p.L892S	1.000	32	0%	105	44.8%	7	57.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ANK3	288	genome.wustl.edu	37	10	61959948	61959948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020987.2	-1	reviewed	p.G477D	1.000	22	0%	93	39.8%	3	33.3%	probably_damaging(1)	tolerated(0.25)	deleterious(0.537)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
RHOBTB1	9886	genome.wustl.edu	37	10	62648292	62648292	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014836.4	-1	reviewed	p.F378L	0.001	18	0%	30	40%	2	0%	possibly_damaging(0.712)	tolerated(0.21)	neutral(0.301)	HMMSmart_BTB,superfamily_BTB/POZ_fold
ARID5B	84159	genome.wustl.edu	37	10	63810652	63810652	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032199.2	+1	validated	p.N247H	1.000	54	0%	121	44.6%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ZNF365	22891	genome.wustl.edu	37	10	64429984	64429984	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199451.2	+1	reviewed	p.D438N	0.000	51	0%	151	29.8%	0	-	unknown(0)	-	-	NULL
NRBF2	29982	genome.wustl.edu	37	10	64905997	64905997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030759.3	+1	validated	p.R20H	0.997	36	0%	122	39.3%	4	0%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	NULL
JMJD1C	221037	genome.wustl.edu	37	10	64975327	64975327	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032776.1	-1	validated	p.V270I	1.000	49	0%	124	48.4%	0	-	benign(0)	tolerated(0.89)	-	NULL
LRRTM3	347731	genome.wustl.edu	37	10	68687033	68687033	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178011.3	+1	validated	p.R120I	1.000	25	0%	54	31.5%	0	-	possibly_damaging(0.95)	deleterious(0.01)	deleterious(0.799)	HMMSmart_SM00369,superfamily_L domain-like
HERC4	26091	genome.wustl.edu	37	10	69714447	69714447	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022079.2	-1	validated	p.E756*	1.000	73	0%	154	46.8%	13	0%	-	-	-	HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
MYPN	84665	genome.wustl.edu	37	10	69955234	69955234	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032578.2	+1	validated	p.M1035V	1.000	15	0%	76	34.2%	0	-	benign(0.026)	tolerated(0.2)	neutral(0.050)	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
TET1	80312	genome.wustl.edu	37	10	70432653	70432653	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030625.2	+1	validated	p.R1559C	1.000	63	0%	229	45%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
STOX1	219736	genome.wustl.edu	37	10	70641825	70641825	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130161.2	+1	reviewed	p.T141M	0.994	66	0%	241	42.7%	8	12.5%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Stork_head
DDX21	9188	genome.wustl.edu	37	10	70719619	70719619	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004728.2	+1	reviewed	p.E49*	0.995	34	0%	61	44.3%	2	100%	-	-	-	NULL
P4HA1	5033	genome.wustl.edu	37	10	74806772	74806772	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000917.3	-1	reviewed	p.D330Y	1.000	47	0%	209	50.2%	51	58.8%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
SYNPO2L	79933	genome.wustl.edu	37	10	75413402	75413402	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114133.1	-1	validated	p.D89	0.004	19	0%	15	53.3%	0	-	-	-	-	superfamily_PDZ domain-like
SYNPO2L	79933	genome.wustl.edu	37	10	75413977	75413977	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114133.1	-1	validated	p.I56S	1.000	29	0%	63	33.3%	0	-	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
PLAU	5328	genome.wustl.edu	37	10	75673383	75673383	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002658.3	+1	reviewed	p.E183*	0.932	28	0%	55	54.5%	3	0%	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
KCNMA1	3778	genome.wustl.edu	37	10	78880760	78880760	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014797.2	-1	reviewed	p.I285M	0.999	100	0%	131	37.4%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
NRG3	10718	genome.wustl.edu	37	10	83635596	83635596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010848.3	+1	reviewed	p.R167H	1.000	26	0%	39	33.3%	0	-	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	NULL
PTEN	5728	genome.wustl.edu	37	10	89692904	89692904	+	Missense_Mutation	SNP	C	C	G	rs121909224	byCluster	TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.R130G	1.000	66	0%	204	37.7%	19	73.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89692953	89692953	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.L146*	1.000	47	0%	154	43.5%	21	4.7%	-	-	-	HMMPfam_DSPc,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
FAS	355	genome.wustl.edu	37	10	90770563	90770563	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000043.3	+1	reviewed	p.I187L	0.000	128	0%	340	34.4%	8	62.5%	-	-	-	NULL
IFIT2	3433	genome.wustl.edu	37	10	91065731	91065731	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001547.4	+1	validated	p.K6N	0.002	32	0%	54	44.4%	1	0%	unknown(0)	tolerated(0.12)	-	NULL
PCGF5	84333	genome.wustl.edu	37	10	93021104	93021104	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032373.3	+1	provisional	p.R166*	1.000	68	0%	55	40%	0	-	-	-	-	NULL
KIF11	3832	genome.wustl.edu	37	10	94408130	94408130	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004523.3	+1	reviewed	p.K903N	0.098	74	0%	113	56.6%	4	0%	possibly_damaging(0.926)	tolerated(0.11)	deleterious(0.646)	NULL
HHEX	3087	genome.wustl.edu	37	10	94454331	94454331	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002729.4	+1	reviewed	p.E207*	0.988	33	0%	92	42.4%	3	0%	-	-	-	NULL
EXOC6	54536	genome.wustl.edu	37	10	94675631	94675631	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019053.4	+1	reviewed	p.L260F	0.027	117	0%	179	38%	4	25%	benign(0)	tolerated(0.72)	neutral(0.002)	NULL
NOC3L	64318	genome.wustl.edu	37	10	96121506	96121506	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022451.9	-1	provisional	p.E45*	1.000	257	0%	470	38.3%	0	-	-	-	-	NULL
HPSE2	60495	genome.wustl.edu	37	10	100995554	100995554	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021828.4	-1	reviewed	p.R2	1.000	15	0%	33	33.3%	0	-	-	-	-	NULL
DNMBP	23268	genome.wustl.edu	37	10	101715312	101715312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015221.2	-1	validated	p.R640Q	0.022	55	0%	50	52%	0	-	probably_damaging(0.986)	deleterious(0.03)	deleterious(0.799)	NULL
CUEDC2	79004	genome.wustl.edu	37	10	104184080	104184080	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024040.2	-1	validated	p.E118K	0.459	12	0%	60	41.7%	73	50.6%	benign(0.025)	tolerated(0.61)	neutral(0.005)	NULL
SH3PXD2A	9644	genome.wustl.edu	37	10	105372875	105372875	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000420222	-1	known	p.E258*	1.000	15	0%	92	41.3%	5	20%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SH3-domain
SLK	9748	genome.wustl.edu	37	10	105762395	105762395	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014720.2	+1	provisional	p.K487Q	0.002	79	0%	73	34.2%	1	100%	benign(0)	tolerated(0.65)	neutral(0.003)	superfamily_Protein kinase-like (PK-like)
COL17A1	1308	genome.wustl.edu	37	10	105831826	105831826	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000494.3	-1	reviewed	p.R143*	1.000	41	0%	115	49.6%	1	0%	-	-	-	NULL
WDR96	80217	genome.wustl.edu	37	10	105889948	105889948	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000434629	-1	known	p.L981R	0.991	177	0%	539	36.2%	34	70.5%	-	-	-	NULL
WDR96	80217	genome.wustl.edu	37	10	105956626	105956626	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025145.5	-1	provisional	p.I426M	0.013	72	0%	130	43.1%	12	33.3%	benign(0.417)	deleterious(0.03)	deleterious(0.499)	superfamily_WD40 repeat-like
PNLIPRP3	119548	genome.wustl.edu	37	10	118225624	118225624	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001011709.2	+1	validated	p.L291I	0.962	201	0%	445	38%	0	-	benign(0.332)	tolerated(0.22)	neutral(0.146)	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases
KIAA1598	57698	genome.wustl.edu	37	10	118674895	118674895	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127211.1	-1	validated	p.P432	0.469	55	0%	184	41.8%	11	72.7%	-	-	-	NULL
RAB11FIP2	22841	genome.wustl.edu	37	10	119798706	119798706	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014904.2	-1	validated	p.E348*	1.000	160	0%	296	36.8%	0	-	-	-	-	NULL
GRK5	2869	genome.wustl.edu	37	10	121196273	121196273	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005308.2	+1	reviewed	p.F283	0.929	26	0%	97	43.3%	3	33.3%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
BAG3	9531	genome.wustl.edu	37	10	121411274	121411274	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004281.3	+1	reviewed	p.K29N	1.000	7	0.000	13	0.308	40	40%	unknown(0)	deleterious(0)	-	HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP
WDR11	55717	genome.wustl.edu	37	10	122619762	122619762	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018117.11	+1	reviewed	p.S165Y	1.000	38	0%	122	37.7%	4	75%	probably_damaging(0.992)	deleterious(0.03)	deleterious(0.812)	superfamily_WD40_like
C10orf137	26098	genome.wustl.edu	37	10	127451880	127451880	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015608.2	+1	validated	p.E1152K	0.955	47	0%	83	26.5%	9	77.7%	benign(0.001)	tolerated(0.11)	neutral(0.272)	NULL
DOCK1	1793	genome.wustl.edu	37	10	129231659	129231659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000398025	+1	known	p.S1721L	0.998	33	0%	106	34%	13	53.8%	possibly_damaging(0.925)	tolerated(0.3)	neutral(0.402)	NULL
MKI67	4288	genome.wustl.edu	37	10	129907047	129907047	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002417.4	-1	reviewed	p.T1019	0.000	130	0.8%	483	38.1%	0	-	-	-	-	HMMPfam_K167R
MKI67	4288	genome.wustl.edu	37	10	129913909	129913909	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002417.4	-1	reviewed	p.E255*	0.000	57	0%	170	46.5%	0	-	-	-	-	NULL
DPYSL4	10570	genome.wustl.edu	37	10	134006168	134006168	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006426.2	+1	validated	p.I45	0.827	28	0%	73	45.2%	0	-	-	-	-	superfamily_Composite domain of metallo-dependent hydrolases
MUC5B	727897	genome.wustl.edu	37	11	1266525	1266525	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002458.1	+1	validated	p.S2808	0.000	202	0%	301	10%	327	3.9%	-	-	-	NULL
MUC5B	727897	genome.wustl.edu	37	11	1270178	1270178	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002458.1	+1	validated	p.T4026M	0.006	164	0%	305	24.9%	358	34%	unknown(0)	-	-	NULL
OR52K2	119774	genome.wustl.edu	37	11	4471177	4471177	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005172.2	+1	validated	p.A203V	1.000	70	0%	391	38.1%	0	-	probably_damaging(0.997)	tolerated(0.57)	deleterious(0.472)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR51S1	119692	genome.wustl.edu	37	11	4869969	4869969	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004758.1	-1	provisional	p.S157Y	0.000	38	0%	65	35.4%	0	-	benign(0.004)	deleterious(0.04)	neutral(0.349)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR52A5	390054	genome.wustl.edu	37	11	5153632	5153632	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005160.2	-1	validated	p.P81S	0.998	68	0%	86	47.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
OR52A1	23538	genome.wustl.edu	37	11	5173437	5173437	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012375.2	-1	validated	p.R55C	0.000	19	0%	39	35.9%	0	-	probably_damaging(0.98)	deleterious(0.03)	deleterious(0.788)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR52B6	340980	genome.wustl.edu	37	11	5602711	5602711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005162.2	+1	validated	p.G202D	0.999	36	0%	107	40.2%	0	-	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	HMMPfam_7tm_1,superfamily_SSF81321
TRIM5	85363	genome.wustl.edu	37	11	5699533	5699533	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000438025	-1	known	p.R92Q	0.000	28	0%	155	49%	7	71.4%	-	-	-	NULL
DNHD1	144132	genome.wustl.edu	37	11	6559702	6559702	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144666.2	+1	provisional	p.E1030K	0.633	24	0%	56	33.9%	0	-	possibly_damaging(0.936)	tolerated(0.76)	neutral(0.383)	HMMPfam_DHC_N2
RRP8	23378	genome.wustl.edu	37	11	6623118	6623118	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015324.2	-1	provisional	p.N143H	0.003	67	0%	239	41.4%	13	61.5%	benign(0.002)	tolerated(0.62)	neutral(0.004)	NULL
DCHS1	8642	genome.wustl.edu	37	11	6653553	6653553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003737.2	-1	reviewed	p.A1064T	1.000	23	0%	60	23.3%	0	-	benign(0)	tolerated(1)	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
WEE1	7465	genome.wustl.edu	37	11	9606861	9606861	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003390.3	+1	reviewed	p.E449K	1.000	154	0%	299	46.8%	6	33.3%	possibly_damaging(0.439)	tolerated(0.14)	neutral(0.392)	superfamily_Kinase_like,HMMPfam_Pkinase
BTBD10	84280	genome.wustl.edu	37	11	13424798	13424798	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032320.5	-1	validated	p.F345C	1.000	88	0%	186	21%	4	25%	possibly_damaging(0.772)	deleterious(0)	deleterious(0.732)	NULL
SPON1	10418	genome.wustl.edu	37	11	14101562	14101562	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000310358	+1	known	p.Y223S	1.000	34	0%	93	33.3%	21	0%	unknown(0)	-	-	HMMPfam_Spond_N
ABCC8	6833	genome.wustl.edu	37	11	17482103	17482103	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000352.3	-1	reviewed	p.A315T	1.000	10	0%	28	35.7%	0	-	benign(0.027)	tolerated(0.16)	neutral(0.061)	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
SPTY2D1	144108	genome.wustl.edu	37	11	18636203	18636203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194285.2	-1	validated	p.E540K	1.000	27	0%	91	36.3%	9	66.6%	unknown(0)	deleterious(0.04)	-	NULL
E2F8	79733	genome.wustl.edu	37	11	19256469	19256469	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024680.2	-1	validated	p.I196	0.912	47	0%	155	40.6%	1	100%	-	-	-	NULL
SLC6A5	9152	genome.wustl.edu	37	11	20636356	20636356	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004211.3	+1	reviewed	p.E373*	1.000	46	0%	140	49.3%	0	-	-	-	-	HMMPfam_SNF
SLC6A5	9152	genome.wustl.edu	37	11	20668479	20668479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004211.3	+1	reviewed	p.T690N	0.999	31	0%	136	37.5%	0	-	benign(0.226)	deleterious(0.02)	neutral(0.406)	HMMPfam_SNF
ANO5	203859	genome.wustl.edu	37	11	22284576	22284576	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_213599.2	+1	reviewed	p.E629*	1.000	83	0%	214	37.4%	0	-	-	-	-	HMMPfam_DUF590
SLC17A6	57084	genome.wustl.edu	37	11	22398170	22398170	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020346.2	+1	validated	p.L455	1.000	44	0%	220	38.6%	0	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
ANO3	63982	genome.wustl.edu	37	11	26463504	26463504	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031418.2	+1	validated	p.S29L	0.138	31	0%	85	27.1%	0	-	possibly_damaging(0.621)	deleterious(0.01)	deleterious(0.622)	NULL
CCDC73	493860	genome.wustl.edu	37	11	32635419	32635419	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008391.2	-1	validated	p.E815D	0.437	121	0%	199	40.7%	0	-	benign(0.008)	deleterious(0)	neutral(0.445)	NULL
CCDC73	493860	genome.wustl.edu	37	11	32722337	32722337	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008391.2	-1	validated	p.K105N	1.000	56	0%	79	31.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PAMR1	25891	genome.wustl.edu	37	11	35453938	35453938	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015430.2	-1	validated	p.P727H	1.000	31	0%	68	41.2%	35	5.7%	probably_damaging(0.968)	tolerated(0.12)	deleterious(0.670)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
API5	8539	genome.wustl.edu	37	11	43340247	43340247	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142930.1	+1	validated	p.R43*	1.000	49	0%	184	37.5%	2	50%	-	-	-	HMMPfam_API5,superfamily_ARM-type_fold
HSD17B12	51144	genome.wustl.edu	37	11	43702511	43702511	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016142.2	+1	validated	p.V45D	0.860	16	0%	32	46.9%	9	22.2%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
OR4C12	283093	genome.wustl.edu	37	11	50003758	50003758	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005270.2	-1	validated	p.G94W	0.270	25	0%	53	50.9%	0	-	benign(0.02)	deleterious(0.01)	neutral(0.407)	HMMPfam_7tm_1,superfamily_SSF81321
TRIM48	79097	genome.wustl.edu	37	11	55033090	55033090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024114.3	+1	validated	p.K158N	0.015	43	0%	96	39.6%	0	-	benign(0.15)	tolerated(0.31)	neutral(0.040)	NULL
OR4A15	81328	genome.wustl.edu	37	11	55135753	55135753	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005275.1	+1	provisional	p.D132N	0.000	54	0%	86	43%	0	-	benign(0.066)	tolerated(0.31)	neutral(0.032)	HMMPfam_7tm_1,superfamily_SSF81321
OR4A15	81328	genome.wustl.edu	37	11	55136122	55136122	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005275.1	+1	provisional	p.T255P	0.000	62	0%	120	40%	0	-	possibly_damaging(0.44)	deleterious(0.01)	deleterious(0.549)	HMMPfam_7tm_1,superfamily_SSF81321
ENSG00000181943	0	genome.wustl.edu	37	11	55259154	55259154	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000314657	+1	known	p.L146I	0.000	65	0%	124	29.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR4P4	81300	genome.wustl.edu	37	11	55406622	55406622	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004124.1	+1	provisional	p.F263L	0.001	31	0%	104	87.5%	0	-	benign(0)	tolerated(0.41)	neutral(0.015)	HMMPfam_7tm_1,superfamily_SSF81321
OR5D18	219438	genome.wustl.edu	37	11	55587477	55587477	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001952.1	+1	provisional	p.F124	0.616	45	0%	141	44.7%	0	-	-	-	-	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
CTNND1	1500	genome.wustl.edu	37	11	57576003	57576003	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085458.1	+1	validated	p.E745*	0.993	27	0%	47	36.2%	23	17.3%	-	-	-	superfamily_ARM repeat
OR5AN1	390195	genome.wustl.edu	37	11	59132473	59132473	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004729.1	+1	provisional	p.D181G	0.953	56	0%	121	40.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_SSF81321
MS4A4E	643680	genome.wustl.edu	37	11	59980517	59980517	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_931886.3	-1	model	p.S163*	0.000	7	0.000	16	0.250	0	-	-	-	-	HMMPfam_CD20
MS4A4A	51338	genome.wustl.edu	37	11	60068514	60068514	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148975.1	+1	reviewed	p.R124I	0.886	383	0%	575	41.4%	8	0%	probably_damaging(0.954)	deleterious(0.04)	deleterious(0.746)	HMMPfam_CD20
MS4A8B	83661	genome.wustl.edu	37	11	60468341	60468341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031457.1	+1	reviewed	p.S3L	0.003	29	0%	138	39.1%	585	44.1%	benign(0.429)	tolerated(0.08)	neutral(0.440)	NULL
PGA5	5222	genome.wustl.edu	37	11	61018711	61018711	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014224.2	+1	validated	p.F375	0.957	32	0%	156	41%	0	-	-	-	-	HMMPfam_Asp,superfamily_Pept_Aspartic
C11orf9	745	genome.wustl.edu	37	11	61543557	61543557	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127392.1	+1	validated	p.I447	0.855	37	0%	46	41.3%	0	-	-	-	-	HMMPfam_NDT80_PhoG,superfamily_p53-like transcription factors
CATSPER1	117144	genome.wustl.edu	37	11	65788349	65788349	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053054.3	-1	reviewed	p.I620	0.997	25	0%	27	40.7%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
RCE1	9986	genome.wustl.edu	37	11	66611760	66611760	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005133.2	+1	reviewed	p.L126I	1.000	89	0%	219	39.7%	10	30%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
C11orf86	254439	genome.wustl.edu	37	11	66743066	66743066	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136485.1	+1	predicted	p.A78V	0.128	16	0%	10	50%	0	-	benign(0.121)	deleterious(0.05)	neutral(0.355)	NULL
PPP1CA	5499	genome.wustl.edu	37	11	67168230	67168230	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008709.1	-1	reviewed	p.E127D	1.000	24	0%	66	40.9%	431	44.5%	possibly_damaging(0.803)	deleterious(0.03)	deleterious(0.667)	HMMPfam_Metallophos,HMMSmart_PP2Ac,superfamily_SSF56300
CCDC89	220388	genome.wustl.edu	37	11	85396894	85396894	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152723.1	-1	provisional	p.L94I	1.000	27	0%	60	46.7%	3	33.3%	probably_damaging(0.959)	deleterious(0.03)	deleterious(0.767)	NULL
SYTL2	54843	genome.wustl.edu	37	11	85435681	85435681	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206927.2	-1	reviewed	p.E607*	0.994	55	0%	116	44.8%	0	-	-	-	-	NULL
TYR	7299	genome.wustl.edu	37	11	88911494	88911494	+	Missense_Mutation	SNP	G	G	A	rs13312741	byCluster;byFrequency	TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000372.4	+1	reviewed	p.D125N	0.998	25	0%	54	42.6%	0	-	benign(0.01)	tolerated(0.15)	neutral(0.241)	superfamily_Di-copper centre-containing domain
FOLH1B	219595	genome.wustl.edu	37	11	89424292	89424292	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153696.2	+1	provisional	p.M314I	0.974	117	0%	216	43.1%	0	-	-	-	-	HMMPfam_TFR_dimer,superfamily_Transferrin_rcpt-like_dimerise
ENSG00000234376	0	genome.wustl.edu	37	11	89486524	89486524	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000411859	-1	known	p.S204Y	0.676	137	0%	221	32.6%	0	-	-	-	-	NULL
CHORDC1	26973	genome.wustl.edu	37	11	89944392	89944392	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012124.2	-1	validated	p.N142H	0.508	169	0%	335	47.2%	16	25%	benign(0.034)	tolerated(0.11)	neutral(0.274)	NULL
HEPHL1	341208	genome.wustl.edu	37	11	93826783	93826783	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098672.1	+1	validated	p.R804Q	0.537	33	0%	117	35%	0	-	benign(0.005)	tolerated(0.58)	neutral(0.005)	superfamily_Cupredoxin
CNTN5	53942	genome.wustl.edu	37	11	100141898	100141898	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014361.2	+1	reviewed	p.R747*	0.994	53	0%	118	45.8%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
ARHGAP42	143872	genome.wustl.edu	37	11	100812581	100812581	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152432.2	+1	provisional	p.M300R	1.000	119	0%	150	40.7%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
KIAA1377	57562	genome.wustl.edu	37	11	101833844	101833844	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020802.2	+1	validated	p.S693Y	0.000	33	0%	65	44.6%	3	0%	possibly_damaging(0.814)	deleterious(0)	deleterious(0.752)	NULL
BIRC2	329	genome.wustl.edu	37	11	102221343	102221343	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001166.3	+1	reviewed	p.S253Y	0.739	36	0%	121	48.8%	9	66.6%	benign(0.133)	deleterious(0.04)	neutral(0.360)	NULL
PDGFD	80310	genome.wustl.edu	37	11	103866881	103866881	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025208.4	-1	reviewed	p.K141T	0.999	157	0%	333	38.7%	1	0%	benign(0.001)	tolerated(0.88)	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
GUCY1A2	2977	genome.wustl.edu	37	11	106558442	106558442	+	Missense_Mutation	SNP	A	A	G	rs184165416	by1000genomes	TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000855.1	-1	validated	p.S678P	1.000	31	0%	86	26.7%	0	-	probably_damaging(1)	tolerated(0.3)	deleterious(0.528)	HMMPfam_Guanylate_cyc,superfamily_Adenylyl and guanylyl cyclase catalytic domain
CWF19L2	143884	genome.wustl.edu	37	11	107197723	107197723	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152434.2	-1	validated	p.R866	0.991	53	0%	160	31.9%	4	50%	-	-	-	HMMPfam_CwfJ_C_2
CWF19L2	143884	genome.wustl.edu	37	11	107313720	107313720	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152434.2	-1	validated	p.K132T	1.000	87	0%	303	37.3%	1	0%	benign(0.383)	deleterious(0)	deleterious(0.567)	NULL
RAB39A	54734	genome.wustl.edu	37	11	107832683	107832683	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017516.1	+1	provisional	p.R80Q	1.000	35	0%	65	35.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
ATM	472	genome.wustl.edu	37	11	108218017	108218017	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000051.3	+1	reviewed	p.L2866I	1.000	39	0%	112	38.4%	4	25%	possibly_damaging(0.857)	tolerated(0.12)	deleterious(0.592)	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,PatternScan_PI3_4_KINASE_2
ARHGAP20	57569	genome.wustl.edu	37	11	110451092	110451092	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020809.2	-1	validated	p.L860I	0.783	65	0%	161	44.1%	0	-	probably_damaging(0.968)	deleterious(0)	deleterious(0.855)	NULL
TTC12	54970	genome.wustl.edu	37	11	113196254	113196254	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017868.3	+1	validated	p.E111*	0.976	42	0%	73	39.7%	8	12.5%	-	-	-	HMMPfam_TPR_1,superfamily_ARM-type_fold,HMMSmart_TPR,superfamily_SSF48452
TMPRSS5	80975	genome.wustl.edu	37	11	113570406	113570406	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030770.2	-1	reviewed	p.A39V	0.000	40	0%	22	50%	0	-	unknown(0)	deleterious(0)	-	NULL
ENSG00000244817	0	genome.wustl.edu	37	11	118182977	118182977	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000501549	-1	known	NULL	0.037	77	0%	232	39.2%	0	-	-	-	-	-
MLL	4297	genome.wustl.edu	37	11	118373178	118373178	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005933.2	+1	validated	p.R2188*	1.000	26	0%	48	35.4%	0	-	-	-	-	NULL
PHLDB1	23187	genome.wustl.edu	37	11	118501935	118501935	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144758.1	+1	validated	p.R613	0.982	15	0.000	9	0.667	9	55.5%	-	-	-	NULL
HYOU1	10525	genome.wustl.edu	37	11	118917135	118917135	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130991.1	-1	reviewed	p.E961*	0.726	26	0%	87	35.6%	95	51.5%	-	-	-	NULL
TBCEL	219899	genome.wustl.edu	37	11	120957491	120957491	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130047.1	+1	validated	p.H321N	1.000	48	0%	99	29.3%	1	100%	possibly_damaging(0.462)	tolerated(0.33)	neutral(0.175)	NULL
SORL1	6653	genome.wustl.edu	37	11	121348862	121348862	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003105.4	+1	reviewed	p.K146N	0.990	114	0%	236	37.3%	1	0%	benign(0)	tolerated(0.48)	neutral(0.011)	HMMSmart_SM00602,superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase
TMEM225	338661	genome.wustl.edu	37	11	123754849	123754849	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013743.1	-1	provisional	p.F132L	0.041	54	0%	78	41%	0	-	possibly_damaging(0.753)	tolerated(0.06)	deleterious(0.599)	NULL
OR8G5	219865	genome.wustl.edu	37	11	124120963	124120963	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000341493	+1	known	p.L181I	0.463	97	0%	279	41.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
STT3A	3703	genome.wustl.edu	37	11	125475575	125475575	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152713.3	+1	validated	p.V187A	1.000	34	0%	220	33.6%	85	37.6%	probably_damaging(0.984)	deleterious(0.03)	deleterious(0.795)	HMMPfam_STT3
DDX25	29118	genome.wustl.edu	37	11	125788609	125788609	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013264.3	+1	reviewed	p.E375D	0.999	43	0%	216	42.6%	0	-	benign(0)	tolerated(0.33)	neutral(0.024)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
ST3GAL4	6484	genome.wustl.edu	37	11	126278289	126278289	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006278.1	+1	provisional	p.F171	0.356	52	0%	116	30.2%	10	20%	-	-	-	HMMPfam_Glyco_transf_29
BARX2	8538	genome.wustl.edu	37	11	129246050	129246050	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003658.4	+1	reviewed	p.E40D	1.000	16	0%	56	41.1%	6	50%	benign(0.071)	tolerated(0.27)	neutral(0.038)	NULL
SNX19	399979	genome.wustl.edu	37	11	130785489	130785489	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014758.2	-1	validated	p.S116P	0.997	34	0%	42	47.6%	4	75%	benign(0.307)	tolerated(0.06)	neutral(0.418)	HMMPfam_PXA,HMMSmart_SM00313
GLB1L3	112937	genome.wustl.edu	37	11	134181026	134181026	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080407.2	+1	validated	p.Y417H	0.006	23	0%	59	39%	0	-	benign(0.096)	tolerated(0.12)	neutral(0.268)	NULL
CACNA1C	775	genome.wustl.edu	37	12	2162748	2162748	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199460.2	+1	reviewed	p.R7M	1.000	34	0%	129	38.8%	0	-	possibly_damaging(0.496)	deleterious(0.01)	deleterious(0.571)	NULL
CACNA1C	775	genome.wustl.edu	37	12	2614095	2614095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199460.2	+1	reviewed	p.L401F	1.000	72	0%	274	42%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
FOXM1	2305	genome.wustl.edu	37	12	2983191	2983191	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_202002.1	-1	validated	p.L152I	0.003	46	0%	231	42.4%	10	60%	benign(0.078)	tolerated(0.37)	neutral(0.025)	NULL
TULP3	7289	genome.wustl.edu	37	12	3040323	3040323	+	Missense_Mutation	SNP	C	C	T	rs142402471	by1000genomes	TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003324.4	+1	reviewed	p.R205W	0.880	17	0%	69	40.6%	7	57.1%	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	HMMPfam_Tub,superfamily_Transcriptional factor tubby C-terminal domain
C12orf4	57102	genome.wustl.edu	37	12	4645321	4645321	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020374.2	-1	predicted	p.E14*	1.000	41	0%	135	34.8%	1	0%	-	-	-	NULL
CHD4	1108	genome.wustl.edu	37	12	6702291	6702291	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001273.2	-1	reviewed	p.D873G	1.000	33	0%	51	31.4%	12	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_SNF2_N,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
CHD4	1108	genome.wustl.edu	37	12	6710189	6710189	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001273.2	-1	reviewed	p.S277N	1.000	48	0%	215	39.5%	12	25%	benign(0.132)	tolerated(0.08)	neutral(0.311)	NULL
C1S	716	genome.wustl.edu	37	12	7177820	7177820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001734.3	+1	reviewed	p.K644N	0.000	40	0%	54	35.2%	99	39.3%	benign(0.001)	tolerated(0.22)	neutral(0.042)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
C1R	715	genome.wustl.edu	37	12	7188421	7188421	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000290575	-1	known	p.A525	0.000	22	0%	49	44.9%	64	31.2%	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
C1R	715	genome.wustl.edu	37	12	7241295	7241295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000290575	-1	known	p.E331K	0.002	48	0%	175	37.7%	54	27.7%	benign(0)	tolerated(1)	-	HMMPfam_Sushi,superfamily_Complement control module/SCR domain
CD163	9332	genome.wustl.edu	37	12	7640350	7640350	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000396620	-1	known	p.S585Y	0.000	34	0%	76	34.2%	0	-	unknown(0)	deleterious(0.03)	-	superfamily_SRCR-like
GDF3	9573	genome.wustl.edu	37	12	7842983	7842983	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020634.1	-1	reviewed	p.K196*	0.157	48	0%	60	38.3%	4	0%	-	-	-	NULL
C3AR1	719	genome.wustl.edu	37	12	8211461	8211461	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004054.2	-1	validated	p.D441Y	1.000	36	0%	90	34.4%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Family A G protein-coupled receptor-like
KLRC1	3821	genome.wustl.edu	37	12	10602524	10602524	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002259.4	-1	reviewed	p.R109I	0.001	78	0%	100	33%	0	-	possibly_damaging(0.927)	deleterious(0)	deleterious(0.820)	NULL
DUSP16	80824	genome.wustl.edu	37	12	12633251	12633251	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030640.2	-1	reviewed	p.L241I	0.975	45	0%	178	47.8%	6	33.3%	possibly_damaging(0.922)	tolerated(0.46)	neutral(0.384)	HMMPfam_DSPc,HMMSmart_DSPc,superfamily_SSF52799
PDE3A	5139	genome.wustl.edu	37	12	20799802	20799802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000921.3	+1	validated	p.A828V	1.000	41	0%	120	40.8%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_PDEase_I,HMMSmart_HDc,superfamily_SSF109604
LST-3TM12	338821	genome.wustl.edu	37	12	21196454	21196454	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009562.4	+1	validated	p.R258M	0.000	149	0%	75	61.3%	0	-	possibly_damaging(0.508)	tolerated(0.09)	neutral(0.467)	HMMPfam_OATP,superfamily_MFS general substrate transporter
LST-3TM12	338821	genome.wustl.edu	37	12	21242972	21242972	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009562.4	+1	validated	p.M619L	0.000	103	0%	117	41%	0	-	benign(0.025)	tolerated(0.39)	neutral(0.017)	NULL
SLCO1B1	10599	genome.wustl.edu	37	12	21349967	21349967	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006446.4	+1	reviewed	p.S272Y	0.933	210	0.5%	477	38.8%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_OATP,superfamily_MFS general substrate transporter
PYROXD1	79912	genome.wustl.edu	37	12	21608129	21608129	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024854.3	+1	validated	p.F184L	1.000	70	0%	153	50.3%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pyr_redox_2,superfamily_SSF51905
GYS2	2998	genome.wustl.edu	37	12	21733335	21733335	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021957.3	-1	reviewed	p.E82*	1.000	55	0%	191	35.1%	0	-	-	-	-	HMMPfam_Glycogen_syn,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
ETNK1	55500	genome.wustl.edu	37	12	22824229	22824229	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018638.4	+1	reviewed	p.E331*	1.000	101	0%	223	34.1%	10	0%	-	-	-	HMMPfam_Choline_kinase,superfamily_Kinase_like
LYRM5	144363	genome.wustl.edu	37	12	25357133	25357133	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001660.2	+1	validated	p.E54*	1.000	80	0%	75	46.7%	15	26.6%	-	-	-	HMMPfam_Complex1_LYR
KRAS	3845	genome.wustl.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	A	rs121913529	byCluster	TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033360.2	-1	reviewed	p.G12V	1.000	48	0%	159	43.4%	5	20%	benign(0.048)	deleterious(0)	neutral(0.448)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
ITPR2	3709	genome.wustl.edu	37	12	26812092	26812092	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002223.2	-1	validated	p.E614*	1.000	214	0%	547	41.3%	0	-	-	-	-	HMMPfam_RYDR_ITPR
STK38L	23012	genome.wustl.edu	37	12	27465575	27465575	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015000.3	+1	validated	p.L163I	1.000	92	0%	335	36.7%	4	75%	possibly_damaging(0.927)	deleterious(0)	deleterious(0.820)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
LOC100287284	100287284	genome.wustl.edu	37	12	27916086	27916086	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343149.1	-1	model	p.F243C	0.001	91	0%	248	36.3%	0	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
OVCH1	341350	genome.wustl.edu	37	12	29586708	29586708	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183378.2	-1	validated	p.K1101N	0.003	402	0%	369	34.1%	0	-	benign(0.091)	-	-	NULL
OVCH1	341350	genome.wustl.edu	37	12	29630358	29630358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183378.2	-1	validated	p.A388T	0.001	68	0%	154	50.6%	0	-	benign(0.328)	tolerated(0.11)	neutral(0.374)	superfamily_Spermadhesin CUB domain
DDX11	1663	genome.wustl.edu	37	12	31247735	31247735	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152438.1	+1	reviewed	p.I487	0.933	101	0%	410	30%	2	0%	-	-	-	NULL
OVOS2	144203	genome.wustl.edu	37	12	31283513	31283513	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343151.1	-1	model	p.R1001	0.984	120	0%	120	30%	0	-	-	-	-	superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp
AMN1	196394	genome.wustl.edu	37	12	31850307	31850307	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113402.1	-1	validated	p.A193	0.993	107	0%	134	41%	0	-	-	-	-	superfamily_SSF52047
C12orf35	55196	genome.wustl.edu	37	12	32135147	32135147	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018169.3	+1	validated	p.L420I	0.099	50	0%	51	29.4%	1	100%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
PDZRN4	29951	genome.wustl.edu	37	12	41903641	41903641	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013377.3	+1	validated	p.E119*	1.000	38	0%	65	40%	0	-	-	-	-	NULL
GXYLT1	283464	genome.wustl.edu	37	12	42499729	42499729	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173601.1	-1	validated	p.R252Q	1.000	59	0%	167	39.5%	2	50%	possibly_damaging(0.829)	tolerated(0.27)	neutral(0.348)	HMMPfam_Glyco_transf_8,superfamily_Nucleotide-diphospho-sugar transferases
ADAMTS20	80070	genome.wustl.edu	37	12	43833743	43833743	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025003.3	-1	validated	p.R807I	1.000	145	0%	326	39.6%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_ADAM_spacer1
SLC38A4	55089	genome.wustl.edu	37	12	47181702	47181702	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143824.1	-1	validated	p.F108C	0.999	33	0%	39	30.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aa_trans
DDX23	9416	genome.wustl.edu	37	12	49225092	49225092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004818.2	-1	reviewed	p.A691V	1.000	67	0%	86	29.1%	91	46.1%	benign(0.008)	tolerated(0.34)	neutral(0.023)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
MLL2	8085	genome.wustl.edu	37	12	49415868	49415868	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003482.3	-1	validated	p.K5493N	1.000	37	0%	85	24.7%	14	57.1%	unknown(0)	-	-	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
LIMA1	51474	genome.wustl.edu	37	12	50571714	50571714	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113546.1	-1	validated	p.N472	0.145	59	0%	272	31.2%	14	42.8%	-	-	-	NULL
TMPRSS12	283471	genome.wustl.edu	37	12	51237737	51237737	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182559.2	+1	validated	p.G100	0.000	25	0%	65	49.2%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
LOC100129218	100129218	genome.wustl.edu	37	12	52913943	52913943	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001718439.2	+1	model	p.E424K	0.002	75	0%	66	40.9%	50	54%	-	-	-	NULL
KRT4	3851	genome.wustl.edu	37	12	53205637	53205637	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002272.2	-1	reviewed	p.R270M	1.000	57	0%	225	41.3%	5	20%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_Filament
NEUROD4	58158	genome.wustl.edu	37	12	55420784	55420784	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021191.2	+1	validated	p.E187D	1.000	31	0%	51	45.1%	0	-	benign(0.038)	tolerated(0.53)	neutral(0.009)	NULL
MARS	4141	genome.wustl.edu	37	12	57910283	57910283	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004990.2	+1	reviewed	p.A874	1.000	63	0%	102	30.4%	88	38.6%	benign(0)	tolerated(1)	-	HMMPfam_WHEP-TRS,PatternScan_WHEP_TRS_1,superfamily_S15/NS1_bind
KIF5A	3798	genome.wustl.edu	37	12	57963333	57963333	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004984.2	+1	reviewed	p.K328N	1.000	46	0%	63	52.4%	0	-	possibly_damaging(0.912)	deleterious(0)	deleterious(0.808)	HMMPfam_Kinesin,HMMSmart_SM00129
SLC16A7	9194	genome.wustl.edu	37	12	60168793	60168793	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004731.3	+1	provisional	p.F239L	0.863	92	0%	100	38%	0	-	benign(0.001)	tolerated(1)	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
MON2	23041	genome.wustl.edu	37	12	62981910	62981910	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015026.2	+1	validated	p.S1655*	1.000	78	0%	144	30.6%	16	50%	-	-	-	superfamily_ARM-type_fold
TMEM5	10329	genome.wustl.edu	37	12	64202558	64202558	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014254.1	+1	provisional	p.R340*	1.000	24	0%	92	39.1%	37	64.8%	-	-	-	NULL
IRAK3	11213	genome.wustl.edu	37	12	66641946	66641946	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007199.2	+1	reviewed	p.E596*	0.000	25	0%	41	46.3%	0	-	-	-	-	NULL
CPSF6	11052	genome.wustl.edu	37	12	69653923	69653923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007007.2	+1	validated	p.S472F	1.000	66	0%	243	38.3%	51	45%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
RAB3IP	117177	genome.wustl.edu	37	12	70189042	70189042	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175623.2	+1	validated	p.R285I	0.998	31	0%	60	46.7%	13	61.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Sec2p
PTPRB	5787	genome.wustl.edu	37	12	70956819	70956819	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001109754.1	-1	reviewed	p.A1325T	0.042	42	0%	70	48.6%	1	0%	benign(0)	tolerated(0.67)	neutral(0.003)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TBC1D15	64786	genome.wustl.edu	37	12	72278770	72278770	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022771.4	+1	reviewed	p.E175*	1.000	70	0%	236	44.1%	1	0%	-	-	-	NULL
MYF5	4617	genome.wustl.edu	37	12	81110890	81110890	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005593.2	+1	validated	p.Y16	1.000	8	0.000	22	0.500	0	-	-	-	-	HMMPfam_Basic,HMMSmart_BASIC
LRRIQ1	84125	genome.wustl.edu	37	12	85439801	85439801	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079910.1	+1	validated	p.L114V	0.993	79	0%	111	42.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
LRRIQ1	84125	genome.wustl.edu	37	12	85515480	85515480	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079910.1	+1	validated	p.S1128Y	0.953	120	0%	272	41.2%	2	0%	probably_damaging(0.996)	tolerated(1)	neutral(0.462)	superfamily_RNI-like
ALX1	8092	genome.wustl.edu	37	12	85677394	85677394	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006982.2	+1	reviewed	p.E91K	0.998	34	0%	46	58.7%	0	-	probably_damaging(0.978)	tolerated(0.34)	neutral(0.444)	NULL
CEP290	80184	genome.wustl.edu	37	12	88465102	88465102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025114.3	-1	reviewed	p.L1994F	0.998	291	0%	354	37%	3	33.3%	benign(0.282)	tolerated(0.18)	neutral(0.142)	NULL
CEP290	80184	genome.wustl.edu	37	12	88505110	88505110	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025114.3	-1	reviewed	p.E746*	1.000	46	0%	104	38.5%	0	-	-	-	-	NULL
DCN	1634	genome.wustl.edu	37	12	91540003	91540003	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001920.3	-1	reviewed	p.I304	0.998	39	0%	110	43.6%	94	0%	-	-	-	superfamily_L domain-like
LOC100127919	100127919	genome.wustl.edu	37	12	93429143	93429143	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001719900.1	+1	model	p.S35P	0.003	13	0%	35	28.6%	0	-	-	-	-	NULL
SOCS2	8835	genome.wustl.edu	37	12	93968645	93968645	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003877.3	+1	reviewed	p.R96Q	1.000	43	0%	101	39.6%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
PLXNC1	10154	genome.wustl.edu	37	12	94673269	94673269	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005761.1	+1	provisional	p.K1207Q	1.000	33	0%	117	47.9%	0	-	benign(0.059)	tolerated(0.6)	neutral(0.009)	superfamily_Rho_GAP,HMMPfam_Plexin_cytopl
NTN4	59277	genome.wustl.edu	37	12	96104370	96104370	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021229.3	-1	validated	p.F343	0.943	29	0%	80	35%	12	41.6%	-	-	-	HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin
C12orf63	374467	genome.wustl.edu	37	12	97057618	97057618	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198520.2	+1	validated	p.R249Q	1.000	80	1.3%	146	39%	0	-	unknown(0)	tolerated(0.29)	-	NULL
C12orf63	374467	genome.wustl.edu	37	12	97133791	97133791	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198520.2	+1	validated	p.K766N	0.989	90	0%	112	33.9%	1	0%	unknown(0)	deleterious(0.03)	-	NULL
LOC121456	121456	genome.wustl.edu	37	12	98850350	98850350	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_016411.2	-1	model	NULL	1.000	41	0%	88	42%	0	-	-	-	-	-
UHRF1BP1L	23074	genome.wustl.edu	37	12	100453030	100453030	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015054.1	-1	validated	p.N675K	0.966	38	0%	138	38.4%	1	0%	benign(0.122)	tolerated(0.32)	neutral(0.034)	NULL
UHRF1BP1L	23074	genome.wustl.edu	37	12	100491268	100491268	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015054.1	-1	validated	p.E182*	1.000	108	0%	248	43.5%	0	-	-	-	-	NULL
DEPDC4	120863	genome.wustl.edu	37	12	100657291	100657291	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152317.2	-1	provisional	p.F180V	0.000	59	0%	173	40.5%	2	50%	benign(0.007)	tolerated(0.56)	neutral(0.006)	NULL
ANO4	121601	genome.wustl.edu	37	12	101368659	101368659	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178826.3	+1	validated	p.F163L	1.000	52	0%	236	44.1%	0	-	benign(0.158)	tolerated(0.67)	neutral(0.017)	NULL
UTP20	27340	genome.wustl.edu	37	12	101684026	101684026	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014503.2	+1	validated	p.N237D	1.000	110	0%	194	40.7%	0	-	possibly_damaging(0.885)	tolerated(0.49)	neutral(0.356)	superfamily_ARM repeat
SPIC	121599	genome.wustl.edu	37	12	101880157	101880157	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152323.1	+1	provisional	p.E119K	1.000	26	0%	101	40.6%	0	-	possibly_damaging(0.535)	deleterious(0.01)	deleterious(0.587)	HMMPfam_Ets,HMMSmart_ETS,superfamily_SSF46785
IGF1	3479	genome.wustl.edu	37	12	102874103	102874103	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001111285.1	-1	reviewed	p.F19L	1.000	157	0%	301	41.5%	0	-	benign(0.055)	tolerated(0.07)	neutral(0.323)	NULL
HSP90B1	7184	genome.wustl.edu	37	12	104341167	104341167	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003299.1	+1	provisional	p.E781*	1.000	147	0%	346	40.5%	1643	63.4%	-	-	-	HMMPfam_HSP90
SART3	9733	genome.wustl.edu	37	12	108919884	108919884	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014706.3	-1	reviewed	p.D788N	0.998	19	0%	76	35.5%	19	47.3%	benign(0.005)	tolerated(0.52)	neutral(0.009)	superfamily_RNA-binding domain RBD
SSH1	54434	genome.wustl.edu	37	12	109198957	109198957	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018984.3	-1	validated	p.R277C	1.000	116	0%	218	39%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DEK_C,superfamily_DEK C-terminal domain
ALKBH2	121642	genome.wustl.edu	37	12	109527909	109527909	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001655.2	-1	validated	p.T128	0.549	30	0%	67	32.8%	27	44.4%	-	-	-	NULL
CCDC63	160762	genome.wustl.edu	37	12	111319065	111319065	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152591.1	+1	provisional	p.R273H	0.972	13	0%	43	41.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NAA25	80018	genome.wustl.edu	37	12	112480974	112480974	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024953.3	-1	reviewed	p.F764L	1.000	41	0%	87	37.9%	1	100%	benign(0.059)	tolerated(0.24)	neutral(0.041)	NULL
MIR620	693205	genome.wustl.edu	37	12	116586367	116586367	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000385232	-1	known	NULL	0.000	116	0%	109	44%	0	-	-	-	-	-
HPD	3242	genome.wustl.edu	37	12	122294532	122294532	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002150.2	-1	reviewed	e5-1	1.000	38	0%	102	35.3%	0	-	-	-	-	-
WDR66	144406	genome.wustl.edu	37	12	122380510	122380510	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144668.4	+1	validated	p.D357N	0.932	19	0%	29	44.8%	30	43.3%	probably_damaging(0.993)	tolerated(0.11)	deleterious(0.722)	HMMSmart_SM00320,superfamily_WD40 repeat-like
KNTC1	9735	genome.wustl.edu	37	12	123075166	123075166	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014708.4	+1	reviewed	p.R1338C	1.000	71	0%	381	39.9%	2	50%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
HCAR2	338442	genome.wustl.edu	37	12	123187282	123187282	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177551.3	-1	validated	p.C183*	0.368	27	0%	47	44.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
MPHOSPH9	10198	genome.wustl.edu	37	12	123645763	123645763	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022782.2	-1	validated	p.D949Y	0.949	54	0%	204	37.7%	5	40%	possibly_damaging(0.924)	deleterious(0.04)	deleterious(0.722)	NULL
DNAH10	196385	genome.wustl.edu	37	12	124333344	124333344	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207437.3	+1	validated	p.R1888Q	1.000	33	0%	180	39.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
BRI3BP	140707	genome.wustl.edu	37	12	125509878	125509878	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080626.5	+1	validated	p.V220M	1.000	11	0%	30	46.7%	19	42.1%	possibly_damaging(0.817)	deleterious(0.05)	deleterious(0.654)	NULL
LOC121296	121296	genome.wustl.edu	37	12	127349845	127349845	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343223.1	+1	model	p.E142*	0.994	21	0%	26	42.3%	0	-	-	-	-	NULL
GLT1D1	144423	genome.wustl.edu	37	12	129373276	129373276	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144669.1	+1	provisional	p.L104I	0.990	31	0%	104	49%	0	-	probably_damaging(0.996)	tolerated(0.32)	deleterious(0.486)	NULL
TMEM132D	121256	genome.wustl.edu	37	12	129559478	129559478	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133448.2	-1	validated	p.D748Y	0.997	13	0%	93	26.9%	0	-	benign(0.257)	deleterious(0.02)	neutral(0.410)	NULL
POLE	5426	genome.wustl.edu	37	12	133250189	133250189	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006231.2	-1	validated	p.M444K	1.000	16	0%	27	48.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_POLBc,superfamily_RNaseH_fold
ZNF605	100289635	genome.wustl.edu	37	12	133501975	133501975	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000360187	-1	known	p.R637I	0.243	69	0%	108	41.7%	2	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
SACS	26278	genome.wustl.edu	37	13	23904941	23904941	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014363.4	-1	reviewed	p.E4358D	1.000	38	0%	110	41.8%	0	-	possibly_damaging(0.95)	deleterious(0)	deleterious(0.838)	superfamily_Chaperone J-domain
SACS	26278	genome.wustl.edu	37	13	23911549	23911549	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014363.4	-1	reviewed	p.D2156Y	1.000	26	0%	54	37%	2	0%	possibly_damaging(0.937)	deleterious(0)	deleterious(0.828)	NULL
MIPEP	4285	genome.wustl.edu	37	13	24443563	24443563	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005932.2	-1	reviewed	p.F271V	1.000	31	0%	94	39.4%	12	33.3%	possibly_damaging(0.909)	tolerated(0.09)	deleterious(0.658)	HMMPfam_Peptidase_M3,superfamily_SSF55486
PARP4	143	genome.wustl.edu	37	13	25064843	25064843	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006437.3	-1	reviewed	p.L393I	0.352	53	0%	232	35.8%	1	0%	possibly_damaging(0.538)	tolerated(0.42)	neutral(0.196)	HMMPfam_PARP,superfamily_SSF56399
PABPC3	5042	genome.wustl.edu	37	13	25670421	25670421	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030979.2	+1	validated	p.E29K	1.000	18	0%	46	34.8%	0	-	benign(0.004)	deleterious(0)	neutral(0.445)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
GPR12	2835	genome.wustl.edu	37	13	27333815	27333815	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005288.3	-1	validated	p.V50	0.956	23	0%	40	20%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
FLT3	2322	genome.wustl.edu	37	13	28611388	28611388	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004119.2	-1	reviewed	p.E415*	1.000	53	0%	188	43.1%	0	-	-	-	-	NULL
RXFP2	122042	genome.wustl.edu	37	13	32363297	32363297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130806.3	+1	reviewed	p.R371Q	0.114	48	0%	95	33.7%	0	-	possibly_damaging(0.933)	tolerated(0.44)	neutral(0.392)	HMMSmart_SM00369,superfamily_L domain-like
BRCA2	675	genome.wustl.edu	37	13	32937562	32937562	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000059.3	+1	reviewed	p.K2741N	0.902	36	0%	122	48.4%	0	-	probably_damaging(1)	tolerated(0.35)	deleterious(0.520)	HMMPfam_BRCA-2_OB1,superfamily_Nucleic_acid_OB
STARD13	90627	genome.wustl.edu	37	13	33686017	33686017	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178006.3	-1	validated	p.K835N	1.000	35	0%	213	45.1%	2	0%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMSmart_SM00324,superfamily_GTPase activation domain GAP
MAB21L1	4081	genome.wustl.edu	37	13	36050039	36050039	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005584.4	-1	reviewed	p.Y79	0.998	18	0%	50	30%	0	-	-	-	-	HMMPfam_Mab-21
NBEA	26960	genome.wustl.edu	37	13	36124683	36124683	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015678.4	+1	validated	p.R2219C	1.000	57	0%	167	32.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat,superfamily_PH domain-like
NBEA	26960	genome.wustl.edu	37	13	36239231	36239231	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015678.4	+1	validated	p.P2770L	1.000	30	0%	110	42.7%	0	-	possibly_damaging(0.49)	deleterious(0.01)	deleterious(0.569)	HMMSmart_SM00320,superfamily_WD40 repeat-like
CCNA1	8900	genome.wustl.edu	37	13	37016339	37016339	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003914.3	+1	reviewed	p.S415*	1.000	70	0%	228	37.3%	73	6.8%	-	-	-	HMMPfam_Cyclin_C,HMMSmart_SM00385,superfamily_Cyclin-like
POSTN	10631	genome.wustl.edu	37	13	38162047	38162047	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006475.2	-1	validated	p.R173I	1.000	85	0%	165	38.2%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Fasciclin,HMMSmart_SM00554,superfamily_FAS1 domain
TRPC4	7223	genome.wustl.edu	37	13	38211311	38211311	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003306.1	-1	validated	p.S893Y	0.424	50	0%	96	36.5%	0	-	possibly_damaging(0.509)	deleterious(0)	deleterious(0.615)	NULL
FREM2	341640	genome.wustl.edu	37	13	39453055	39453055	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207361.4	+1	reviewed	p.L2983I	0.098	33	0%	172	43%	0	-	benign(0.322)	tolerated(0.21)	neutral(0.145)	NULL
STOML3	161003	genome.wustl.edu	37	13	39541004	39541004	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145286.2	-1	validated	p.G278	0.000	26	0%	54	40.7%	74	33.7%	-	-	-	NULL
NAA16	79612	genome.wustl.edu	37	13	41936197	41936197	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024561.4	+1	validated	p.E481*	1.000	49	0%	126	29.4%	2	0%	-	-	-	superfamily_TPR-like
TNFSF11	8600	genome.wustl.edu	37	13	43155275	43155275	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003701.3	+1	reviewed	p.R78K	1.000	36	0%	99	41.4%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
DNAJC15	29103	genome.wustl.edu	37	13	43681381	43681381	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013238.2	+1	validated	p.H150Q	0.249	67	0%	82	42.7%	106	59.4%	possibly_damaging(0.733)	deleterious(0.01)	deleterious(0.673)	NULL
RB1	5925	genome.wustl.edu	37	13	49039375	49039375	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000321.2	+1	reviewed	p.R787Q	1.000	104	0%	420	38.1%	13	76.9%	probably_damaging(0.995)	tolerated(0.35)	deleterious(0.478)	HMMPfam_Rb_C
KPNA3	3839	genome.wustl.edu	37	13	50276534	50276534	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002267.3	-1	reviewed	p.F485L	1.000	164	0%	286	44.1%	20	65%	possibly_damaging(0.924)	deleterious(0)	deleterious(0.818)	superfamily_ARM repeat
NEK5	341676	genome.wustl.edu	37	13	52646104	52646104	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199289.1	-1	provisional	p.E634*	0.003	121	0%	320	40.6%	2	0%	-	-	-	NULL
THSD1	55901	genome.wustl.edu	37	13	52972306	52972306	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018676.3	-1	reviewed	p.L28I	0.068	12	0%	20	45%	0	-	benign(0.027)	tolerated(0.14)	neutral(0.251)	NULL
TDRD3	81550	genome.wustl.edu	37	13	61103046	61103046	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030794.2	+1	validated	p.K470Q	0.995	24	0%	48	29.2%	6	66.6%	probably_damaging(0.988)	tolerated(0.16)	deleterious(0.497)	NULL
PCDH20	64881	genome.wustl.edu	37	13	61986041	61986041	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022843.3	-1	validated	p.L731I	1.000	46	0%	79	49.4%	0	-	probably_damaging(0.998)	tolerated(0.33)	deleterious(0.498)	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin
PCDH9	5101	genome.wustl.edu	37	13	66878811	66878811	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203487.2	-1	reviewed	p.E1230D	1.000	24	0%	85	41.2%	0	-	benign(0)	tolerated(0.6)	neutral(0.004)	NULL
MYCBP2	23077	genome.wustl.edu	37	13	77825385	77825385	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015057.4	-1	validated	p.W723L	1.000	33	0%	98	43.9%	0	-	probably_damaging(0.99)	tolerated(0.8)	neutral(0.442)	superfamily_RCC1/BLIP-II
SCEL	8796	genome.wustl.edu	37	13	78178539	78178539	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144777.2	+1	validated	p.K382N	1.000	68	0%	133	37.6%	0	-	possibly_damaging(0.722)	tolerated(0.48)	neutral(0.273)	NULL
SLITRK1	114798	genome.wustl.edu	37	13	84455562	84455562	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052910.1	-1	reviewed	p.K27N	1.000	30	0%	68	36.8%	0	-	benign(0.003)	tolerated(0.62)	neutral(0.004)	NULL
ABCC4	10257	genome.wustl.edu	37	13	95723921	95723921	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005845.3	-1	reviewed	p.E1069*	1.000	46	0%	160	43.1%	1	100%	-	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCC4	10257	genome.wustl.edu	37	13	95847192	95847192	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005845.3	-1	reviewed	e9-1	1.000	28	0%	103	45.6%	0	-	-	-	-	-
LOC643677	643677	genome.wustl.edu	37	13	103387989	103387989	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344085.1	-1	model	p.D4868Y	0.001	69	0%	129	34.9%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
LOC643677	643677	genome.wustl.edu	37	13	103389759	103389759	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344085.1	-1	model	p.L4278I	0.000	93	0%	126	48.4%	0	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103390827	103390827	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344085.1	-1	model	p.E4003*	0.000	169	0%	172	33.1%	0	-	-	-	-	NULL
TEX30	93081	genome.wustl.edu	37	13	103418828	103418828	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138779.3	-1	validated	p.D203Y	1.000	93	0%	213	41.8%	10	50%	probably_damaging(0.977)	deleterious(0.02)	deleterious(0.802)	superfamily_SSF53474
COL4A2	1284	genome.wustl.edu	37	13	111154020	111154020	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001846.2	+1	reviewed	p.R1256*	0.916	14	0%	40	42.5%	72	0%	-	-	-	HMMPfam_Collagen
ING1	3621	genome.wustl.edu	37	13	111372064	111372064	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005537.3	+1	reviewed	p.E352K	1.000	23	0%	50	38%	92	45.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_FYVE/PHD zinc finger
TFDP1	7027	genome.wustl.edu	37	13	114288253	114288253	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007111.4	+1	reviewed	p.V175M	1.000	27	0%	71	33.8%	49	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_E2F_TDP,superfamily_SSF46785
GAS6	2621	genome.wustl.edu	37	13	114526470	114526470	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000820.2	-1	reviewed	p.A511S	0.886	13	0%	30	46.7%	51	50.9%	possibly_damaging(0.543)	deleterious(0.01)	deleterious(0.590)	HMMSmart_LamG,superfamily_ConA_like_lec_gl
CDC16	8881	genome.wustl.edu	37	13	115037737	115037737	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001078645.1	+1	reviewed	p.P561R	1.000	56	0%	91	38.5%	118	50.8%	possibly_damaging(0.906)	deleterious(0.02)	deleterious(0.742)	NULL
TEP1	7011	genome.wustl.edu	37	14	20846195	20846195	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007110.4	-1	reviewed	p.G1903	0.973	57	0%	31	61.3%	1	100%	unknown(0)	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
EDDM3B	64184	genome.wustl.edu	37	14	21238405	21238405	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022360.4	+1	validated	p.E32	0.147	34	0%	85	36.5%	0	-	-	-	-	superfamily_RNaseA
MYH6	4624	genome.wustl.edu	37	14	23857031	23857031	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002471.3	-1	validated	p.K1487N	1.000	39	0%	98	36.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Myosin_tail_1,superfamily_Prefoldin
G2E3	55632	genome.wustl.edu	37	14	31074733	31074733	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017769.3	+1	validated	p.N345H	1.000	28	0%	66	40.9%	2	100%	benign(0.003)	deleterious(0.02)	neutral(0.383)	superfamily_HECT
STRN3	29966	genome.wustl.edu	37	14	31416358	31416358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083893.1	-1	validated	p.K218N	1.000	127	0%	268	11.9%	5	0%	possibly_damaging(0.699)	tolerated(0.34)	neutral(0.275)	NULL
HECTD1	25831	genome.wustl.edu	37	14	31604752	31604752	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015382.2	-1	validated	p.N1062H	1.000	94	0%	145	40%	4	75%	benign(0)	tolerated(0.11)	neutral(0.272)	NULL
BRMS1L	84312	genome.wustl.edu	37	14	36337218	36337218	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032352.3	+1	reviewed	p.K278N	1.000	82	0%	120	36.7%	2	0%	benign(0.001)	tolerated(0.5)	neutral(0.010)	NULL
CLEC14A	161198	genome.wustl.edu	37	14	38724535	38724535	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175060.1	-1	provisional	p.I231	0.000	7	0.000	6	0.667	17	0%	-	-	-	NULL
KLHL28	54813	genome.wustl.edu	37	14	45414993	45414993	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017658.3	-1	validated	p.H47N	1.000	24	0%	51	37.3%	3	33.3%	benign(0.008)	tolerated(0.32)	neutral(0.024)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
FANCM	57697	genome.wustl.edu	37	14	45645115	45645115	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020937.2	+1	reviewed	p.S1053*	0.495	14	0%	11	63.6%	0	-	-	-	-	NULL
MIS18BP1	55320	genome.wustl.edu	37	14	45693269	45693269	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018353.4	-1	validated	p.E841*	0.000	224	0%	376	43.1%	1	0%	-	-	-	NULL
TXNDC16	57544	genome.wustl.edu	37	14	53010174	53010174	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020784.2	-1	validated	p.Q34H	0.976	58	0%	118	34.7%	1	0%	benign(0)	deleterious(0)	neutral(0.445)	superfamily_Thioredoxin-like
CNIH	10175	genome.wustl.edu	37	14	54903120	54903120	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005776.2	-1	validated	p.K39N	1.000	60	0%	101	35.6%	73	47.9%	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	HMMPfam_Cornichon,PatternScan_CORNICHON
KTN1	3895	genome.wustl.edu	37	14	56108419	56108419	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079521.1	+1	validated	p.D705Y	1.000	138	0%	150	44%	18	38.8%	probably_damaging(0.957)	deleterious(0.02)	deleterious(0.784)	NULL
C14orf101	54916	genome.wustl.edu	37	14	57070568	57070568	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017799.3	+1	validated	p.A127V	1.000	42	0%	190	44.7%	2	50%	benign(0.022)	deleterious(0.04)	neutral(0.350)	NULL
PSMA3	5684	genome.wustl.edu	37	14	58718929	58718929	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002788.2	+1	reviewed	p.R66I	1.000	115	0%	239	40.2%	146	47.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Proteasome,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)
ARID4A	5926	genome.wustl.edu	37	14	58817869	58817869	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002892.3	+1	reviewed	p.D495Y	0.999	88	0%	90	41.1%	0	-	possibly_damaging(0.455)	deleterious(0.02)	deleterious(0.532)	NULL
LOC100287149	100287149	genome.wustl.edu	37	14	64194237	64194237	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343279.1	+1	model	p.E67*	0.996	16	0%	22	54.5%	2	0%	-	-	-	NULL
SYNE2	23224	genome.wustl.edu	37	14	64467319	64467319	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182914.2	+1	reviewed	p.E1174*	1.000	65	0%	120	44.2%	0	-	-	-	-	NULL
SYNE2	23224	genome.wustl.edu	37	14	64518377	64518377	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182914.2	+1	reviewed	p.E2582D	0.031	58	0%	119	48.7%	0	-	benign(0.047)	-	-	NULL
ESR2	2100	genome.wustl.edu	37	14	64716374	64716374	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001437.2	-1	reviewed	p.G372E	1.000	37	0%	144	36.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
ZFYVE26	23503	genome.wustl.edu	37	14	68264861	68264861	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015346.3	-1	reviewed	p.E706D	0.990	22	0%	89	41.6%	0	-	probably_damaging(0.991)	tolerated(0.18)	deleterious(0.500)	NULL
RAD51B	5890	genome.wustl.edu	37	14	68352663	68352663	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133509.2	+1	reviewed	p.V177A	1.000	73	1.4%	178	42.1%	0	-	possibly_damaging(0.939)	tolerated(0.18)	neutral(0.441)	HMMSmart_SM00382,HMMPfam_Rad51,superfamily_P-loop containing nucleoside triphosphate hydrolases
PCNX	22990	genome.wustl.edu	37	14	71511997	71511997	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014982.2	+1	validated	p.R1339*	1.000	93	0%	263	34.2%	0	-	-	-	-	NULL
NUMB	8650	genome.wustl.edu	37	14	73743325	73743325	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005743.1	-1	reviewed	p.F639	1.000	40	0%	120	31.7%	47	51%	-	-	-	NULL
ACOT4	122970	genome.wustl.edu	37	14	74061781	74061781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152331.3	+1	validated	p.G230D	0.997	31	0%	118	41.5%	8	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_BAAT_C,superfamily_SSF53474
ALDH6A1	4329	genome.wustl.edu	37	14	74533536	74533536	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005589.2	-1	reviewed	p.R366*	1.000	33	0%	77	33.8%	8	0%	-	-	-	HMMPfam_Aldedh,superfamily_ALDH-like
FOS	2353	genome.wustl.edu	37	14	75748072	75748072	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005252.3	+1	reviewed	p.S363N	1.000	9	0.000	24	0.625	1071	44.4%	possibly_damaging(0.829)	tolerated(0.24)	neutral(0.352)	NULL
VASH1	22846	genome.wustl.edu	37	14	77242295	77242295	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014909.4	+1	validated	p.F197L	1.000	16	0%	27	70.4%	0	-	possibly_damaging(0.88)	tolerated(0.32)	neutral(0.367)	NULL
C14orf166B	145497	genome.wustl.edu	37	14	77311207	77311207	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194287.2	+1	validated	p.F230L	1.000	96	0%	212	46.7%	0	-	unknown(0)	tolerated(0.08)	-	HMMPfam_LRR_1,HMMSmart_SM00368,superfamily_RNI-like
NRXN3	9369	genome.wustl.edu	37	14	79432432	79432432	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004796.4	+1	reviewed	p.E447D	1.000	30	0%	69	52.2%	0	-	benign(0.007)	deleterious(0.02)	neutral(0.383)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
NRXN3	9369	genome.wustl.edu	37	14	80158541	80158541	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105250.1	+1	reviewed	p.Q209H	1.000	72	0%	110	47.3%	0	-	benign(0.149)	deleterious(0.02)	neutral(0.396)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
FLRT2	23768	genome.wustl.edu	37	14	86088381	86088381	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013231.4	+1	reviewed	p.P175S	1.000	22	0%	85	36.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52058
ZC3H14	79882	genome.wustl.edu	37	14	89061174	89061174	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207662.3	+1	validated	p.E35A	1.000	50	0%	153	40.5%	0	-	possibly_damaging(0.832)	deleterious(0)	deleterious(0.762)	NULL
RPS6KA5	9252	genome.wustl.edu	37	14	91444857	91444857	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004755.2	-1	validated	p.V63L	1.000	51	0%	244	41.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
BTBD7	55727	genome.wustl.edu	37	14	93760420	93760420	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002860.2	-1	validated	p.D316Y	1.000	41	0%	105	40%	1	0%	benign(0.003)	deleterious(0)	neutral(0.445)	HMMSmart_SM00225,superfamily_POZ domain
DDX24	57062	genome.wustl.edu	37	14	94526870	94526870	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020414.3	-1	reviewed	p.Q496L	1.000	59	0%	90	38.9%	63	47.6%	benign(0.113)	tolerated(0.09)	neutral(0.305)	HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540
SERPINA12	145264	genome.wustl.edu	37	14	94964632	94964632	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173850.2	-1	provisional	p.E35K	0.000	19	0%	82	28%	0	-	benign(0)	tolerated(0.73)	neutral(0.002)	superfamily_Prot_inh_serpin
MIR539	664612	genome.wustl.edu	37	14	101513724	101513724	+	RNA	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000365690	+1	known	NULL	1.000	134	0.7%	307	39.1%	0	-	-	-	-	-
MIR369	442914	genome.wustl.edu	37	14	101531976	101531976	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000362155	+1	known	NULL	1.000	102	0%	239	38.1%	0	-	-	-	-	-
PPP1R13B	23368	genome.wustl.edu	37	14	104245134	104245134	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015316.2	-1	reviewed	p.R101Q	0.962	130	0%	392	35.7%	6	100%	probably_damaging(0.997)	tolerated(0.13)	deleterious(0.719)	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105419205	105419205	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138420.2	-1	validated	p.P861	0.000	45	0%	150	37.3%	0	-	-	-	-	NULL
LOC729722	729722	genome.wustl.edu	37	15	20086526	20086526	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001716538.2	+1	model	p.N206H	0.001	22	0%	46	21.7%	0	-	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ENSG00000215407	0	genome.wustl.edu	37	15	20434029	20434029	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000400226	-1	known	p.I531	0.998	71	0%	278	14%	9	0%	-	-	-	NULL
ENSG00000215407	0	genome.wustl.edu	37	15	20445994	20445994	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000400226	-1	known	p.N430	0.998	21	0%	64	14.1%	0	-	-	-	-	HMMSmart_SM00228,superfamily_PDZ domain-like
ENSG00000215407	0	genome.wustl.edu	37	15	20456732	20456732	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000400226	-1	known	p.E250*	1.000	44	0%	145	11.7%	0	-	-	-	-	HMMPfam_BRO1
LOC646096	646096	genome.wustl.edu	37	15	20488798	20488798	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_040858.2	+1	model	NULL	1.000	74	0%	180	15%	0	-	-	-	-	-
OR4M2	390538	genome.wustl.edu	37	15	22369069	22369069	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004719.2	+1	validated	p.R165Q	0.012	88	0%	315	35.2%	0	-	benign(0.242)	tolerated(1)	neutral(0.025)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
LOC653061	653061	genome.wustl.edu	37	15	23605590	23605590	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343324.1	+1	model	p.E237*	0.089	53	0%	151	13.2%	0	-	-	-	-	NULL
UBE3A	7337	genome.wustl.edu	37	15	25615955	25615955	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000462.2	-1	reviewed	p.E459*	1.000	56	0%	75	41.3%	0	-	-	-	-	NULL
UBE3A	7337	genome.wustl.edu	37	15	25616215	25616215	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000462.2	-1	reviewed	p.S372L	1.000	57	1.8%	106	50%	3	66.6%	benign(0.004)	tolerated(0.13)	neutral(0.253)	NULL
ATP10A	57194	genome.wustl.edu	37	15	25932873	25932873	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024490.3	-1	reviewed	p.L1090M	1.000	35	0%	92	38%	1	0%	probably_damaging(0.988)	tolerated(0.07)	deleterious(0.756)	NULL
GABRB3	2562	genome.wustl.edu	37	15	26812851	26812851	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000814.4	-1	reviewed	p.R238W	1.000	44	0%	112	41.1%	0	-	benign(0.036)	deleterious(0.01)	neutral(0.408)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
GABRA5	2558	genome.wustl.edu	37	15	27182355	27182355	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000810.3	+1	reviewed	p.V202I	0.429	24	0%	119	37.8%	0	-	benign(0.001)	tolerated(0.93)	-	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
HERC2	8924	genome.wustl.edu	37	15	28377898	28377898	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004667.4	-1	reviewed	p.S4103	1.000	7	0.000	25	0.440	14	35.7%	-	-	-	HMMPfam_RCC1,superfamily_RCC1/BLIP-II
TRPM1	4308	genome.wustl.edu	37	15	31294124	31294124	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002420.4	-1	reviewed	p.G1571	0.847	48	0%	163	42.3%	0	-	-	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	34015064	34015064	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001036.3	+1	validated	p.L2256	0.006	15	0%	39	51.3%	0	-	-	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	34094094	34094094	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001036.3	+1	validated	p.F3315V	1.000	136	0%	188	39.4%	0	-	possibly_damaging(0.677)	-	-	NULL
C15orf29	79768	genome.wustl.edu	37	15	34438978	34438978	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024713.2	-1	validated	p.E258*	1.000	127	0%	263	36.1%	11	18.1%	-	-	-	NULL
AQR	9716	genome.wustl.edu	37	15	35222475	35222475	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014691.2	-1	validated	p.R333I	1.000	106	0%	233	37.3%	0	-	possibly_damaging(0.901)	deleterious(0.01)	deleterious(0.762)	NULL
ENSG00000248276	0	genome.wustl.edu	37	15	35377370	35377370	+	RNA	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000514460	+1	known	NULL	0.004	22	0%	45	31.1%	1	100%	-	-	-	-
INO80	54617	genome.wustl.edu	37	15	41387832	41387832	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017553.1	-1	reviewed	p.F116	1.000	145	0%	249	41.8%	0	-	-	-	-	NULL
EXD1	161829	genome.wustl.edu	37	15	41488137	41488137	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152596.2	-1	provisional	p.I153M	1.000	83	0%	151	42.4%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_3_5_exonuc,HMMSmart_SM00474,superfamily_Ribonuclease H-like
MGA	23269	genome.wustl.edu	37	15	42042457	42042457	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080541.2	+1	validated	p.E2267*	0.992	82	0%	146	44.5%	2	100%	-	-	-	NULL
GANC	2595	genome.wustl.edu	37	15	42635350	42635350	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198141.2	+1	reviewed	p.E743*	1.000	52	0%	204	34.8%	0	-	-	-	-	HMMPfam_Glyco_hydro_31
MAP1A	4130	genome.wustl.edu	37	15	43818002	43818002	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002373.5	+1	reviewed	p.E1444G	0.023	71	0%	100	35%	1	100%	benign(0.001)	tolerated(0.21)	neutral(0.044)	NULL
SPG11	80208	genome.wustl.edu	37	15	44912539	44912539	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025137.3	-1	reviewed	p.N895H	0.387	78	0%	247	40.9%	4	75%	possibly_damaging(0.845)	tolerated(0.09)	deleterious(0.621)	NULL
SEMA6D	80031	genome.wustl.edu	37	15	48053623	48053623	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153618.1	+1	reviewed	p.Y148D	1.000	64	0%	89	29.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
SEMA6D	80031	genome.wustl.edu	37	15	48055253	48055253	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153618.1	+1	reviewed	p.V233	1.000	75	0%	110	43.6%	0	-	-	-	-	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
SLC24A5	283652	genome.wustl.edu	37	15	48428985	48428985	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_205850.2	+1	reviewed	p.C232	0.558	72	0%	139	38.1%	1	0%	-	-	-	NULL
FBN1	2200	genome.wustl.edu	37	15	48720669	48720669	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000138.4	-1	reviewed	e56-1	1.000	28	0%	85	36.5%	0	-	-	-	-	-
SECISBP2L	9728	genome.wustl.edu	37	15	49284839	49284839	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014701.2	-1	provisional	p.D925N	1.000	55	0%	123	43.9%	7	57.1%	possibly_damaging(0.647)	tolerated(0.07)	deleterious(0.546)	NULL
MYO5A	4644	genome.wustl.edu	37	15	52675325	52675325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000259.3	-1	reviewed	p.R659C	1.000	47	0%	155	40.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
UNC13C	440279	genome.wustl.edu	37	15	54817777	54817777	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080534.1	+1	provisional	p.E1830*	1.000	39	0%	181	37%	0	-	-	-	-	HMMPfam_DUF1041
PYGO1	26108	genome.wustl.edu	37	15	55838847	55838847	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015617.1	-1	provisional	p.F212V	0.995	61	0%	112	39.3%	0	-	possibly_damaging(0.832)	tolerated(0.07)	deleterious(0.636)	NULL
PRTG	283659	genome.wustl.edu	37	15	55964683	55964683	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173814.4	-1	validated	p.F667L	0.854	17	0%	84	44%	0	-	benign(0)	tolerated(1)	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
MNS1	55329	genome.wustl.edu	37	15	56726591	56726591	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018365.2	-1	reviewed	p.E338D	1.000	318	0%	487	37.2%	29	48.2%	benign(0.055)	tolerated(0.37)	neutral(0.022)	NULL
AQP9	366	genome.wustl.edu	37	15	58467217	58467217	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020980.3	+1	reviewed	p.A159	0.001	20	0%	134	45.5%	0	-	-	-	-	HMMPfam_MIP,superfamily_Aquaporin-like
ADPGK	83440	genome.wustl.edu	37	15	73044515	73044515	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_023318.1	-1	validated	NULL	0.000	7	0.000	21	0.333	27	44.4%	-	-	-	-
CCDC33	80125	genome.wustl.edu	37	15	74627405	74627405	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000321374	+1	known	p.E331K	0.000	29	0%	77	39%	30	56.6%	-	-	-	NULL
PSTPIP1	9051	genome.wustl.edu	37	15	77329488	77329488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003978.3	+1	reviewed	p.V408I	1.000	34	0%	79	38%	4	0%	probably_damaging(0.998)	tolerated(0.11)	deleterious(0.746)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
ARNT2	9915	genome.wustl.edu	37	15	80750308	80750308	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014862.3	+1	reviewed	p.K62T	1.000	170	0.6%	347	42.4%	1	100%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	superfamily_HLH helix-loop-helix DNA-binding domain
TM6SF1	53346	genome.wustl.edu	37	15	83788338	83788338	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023003.3	+1	validated	p.P101	0.191	64	0%	309	33%	2	0%	-	-	-	NULL
ACAN	176	genome.wustl.edu	37	15	89401939	89401939	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013227.3	+1	reviewed	p.F1926	0.000	19	0%	42	38.1%	0	-	-	-	-	NULL
ACAN	176	genome.wustl.edu	37	15	89402123	89402123	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013227.3	+1	reviewed	p.T1988A	0.001	18	0%	48	35.4%	0	-	possibly_damaging(0.663)	tolerated(0.13)	deleterious(0.487)	NULL
RLBP1	6017	genome.wustl.edu	37	15	89753603	89753603	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000326.4	-1	reviewed	p.F289	0.948	25	0%	66	13.6%	0	-	-	-	-	HMMPfam_CRAL_TRIO,HMMSmart_SM00516,superfamily_CRAL/TRIO domain
C15orf42	90381	genome.wustl.edu	37	15	90144551	90144551	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152259.3	+1	validated	p.R726C	1.000	83	0%	198	45.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
VPS33B	26276	genome.wustl.edu	37	15	91544668	91544668	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018668.3	-1	reviewed	p.S477F	1.000	33	0%	101	43.6%	14	21.4%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins
IGF1R	3480	genome.wustl.edu	37	15	99452043	99452043	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000875.3	+1	reviewed	p.I459M	1.000	48	0%	100	36%	7	57.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Recep_L_domain,superfamily_SSF52058
SYNM	23336	genome.wustl.edu	37	15	99670080	99670080	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145728.2	+1	reviewed	p.R505Q	0.001	50	0%	68	35.3%	0	-	-	-	-	NULL
LYSMD4	145748	genome.wustl.edu	37	15	100269825	100269825	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152449.2	-1	validated	p.E133*	0.946	20	0%	66	36.4%	2	50%	-	-	-	NULL
TPSD1	23430	genome.wustl.edu	37	16	1306673	1306673	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012217.2	+1	reviewed	p.A80V	0.577	15	0%	49	44.9%	0	-	benign(0.097)	deleterious(0.01)	neutral(0.413)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS
BAIAP3	8938	genome.wustl.edu	37	16	1394064	1394064	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003933.3	+1	reviewed	p.F511	0.174	15	0%	22	22.7%	63	61.9%	-	-	-	NULL
C16orf73	254528	genome.wustl.edu	37	16	1894965	1894965	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152764.2	-1	validated	e9-1	1.000	100	0%	204	34.3%	0	-	-	-	-	-
PKMYT1	9088	genome.wustl.edu	37	16	3026882	3026882	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004203.3	-1	reviewed	p.P54L	1.000	14	0%	21	33.3%	2	0%	benign(0.014)	tolerated(0.4)	neutral(0.017)	NULL
CREBBP	1387	genome.wustl.edu	37	16	3788637	3788637	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004380.2	-1	reviewed	p.F1439L	1.000	79	0%	136	41.2%	10	60%	unknown(0)	deleterious(0.01)	-	HMMPfam_DUF906
PPL	5493	genome.wustl.edu	37	16	4943267	4943267	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002705.4	-1	reviewed	p.L533M	0.999	5	0.000	9	0.556	9	22.2%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_SM00150,superfamily_Spectrin repeat
TXNDC11	51061	genome.wustl.edu	37	16	11815454	11815454	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015914.5	-1	provisional	p.A258T	1.000	100	0%	141	40.4%	19	63.1%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
SNX29	92017	genome.wustl.edu	37	16	12146077	12146077	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032167.2	+1	validated	p.E374D	1.000	30	0%	51	35.3%	6	0%	benign(0.001)	tolerated(0.28)	neutral(0.032)	NULL
MYH11	4629	genome.wustl.edu	37	16	15854402	15854402	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040114.1	-1	reviewed	p.E422*	1.000	63	0%	233	39.5%	1	0%	-	-	-	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
XYLT1	64131	genome.wustl.edu	37	16	17221629	17221629	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022166.3	-1	reviewed	p.N706I	1.000	23	0%	96	42.7%	0	-	probably_damaging(0.991)	tolerated(0.06)	deleterious(0.766)	NULL
DNAH3	55567	genome.wustl.edu	37	16	20996939	20996939	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017539.1	-1	provisional	p.I2375	0.228	25	0%	84	44%	0	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
ENSG00000217794	0	genome.wustl.edu	37	16	21559305	21559305	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000403120	-1	known	p.S48Y	0.994	97	0%	324	18.5%	0	-	-	-	-	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase
TNRC6A	27327	genome.wustl.edu	37	16	24762107	24762107	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014494.2	+1	reviewed	p.K38N	1.000	124	0%	197	42.6%	0	-	possibly_damaging(0.85)	deleterious(0)	deleterious(0.772)	NULL
SPN	6693	genome.wustl.edu	37	16	29675430	29675430	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001030288.1	+1	validated	p.S127	0.000	36	0%	98	42.9%	1	0%	-	-	-	NULL
ITGAD	3681	genome.wustl.edu	37	16	31427911	31427911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005353.2	+1	validated	p.V815M	0.000	23	0%	41	46.3%	0	-	benign(0.001)	tolerated(0.06)	neutral(0.323)	HMMPfam_Integrin_alpha2,superfamily_Integrin domains
ZNF267	10308	genome.wustl.edu	37	16	31927273	31927273	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003414.4	+1	validated	p.R568Q	0.999	83	1.2%	127	37%	9	55.5%	probably_damaging(0.991)	tolerated(0.11)	deleterious(0.716)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CHD9	80205	genome.wustl.edu	37	16	53191165	53191165	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025134.4	+1	validated	p.E388D	0.997	26	0%	53	49.1%	1	0%	benign(0.008)	tolerated(0.46)	neutral(0.012)	NULL
NUP93	9688	genome.wustl.edu	37	16	56864530	56864530	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014669.3	+1	validated	p.R340*	1.000	19	0%	76	40.8%	15	0%	-	-	-	HMMPfam_Nic96
NUP93	9688	genome.wustl.edu	37	16	56865847	56865847	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014669.3	+1	validated	p.I393	1.000	27	0%	71	42.3%	13	100%	-	-	-	HMMPfam_Nic96
CNOT1	23019	genome.wustl.edu	37	16	58573715	58573715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016284.3	-1	validated	p.R1650Q	1.000	37	0%	98	33.7%	15	46.6%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
CDH8	1006	genome.wustl.edu	37	16	61761129	61761129	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000394178	-1	known	p.L371I	1.000	25	0%	53	41.5%	0	-	-	-	-	HMMSmart_CA,superfamily_Cadherin
CDH11	1009	genome.wustl.edu	37	16	65016136	65016136	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001797.2	-1	reviewed	p.P356	0.005	21	0%	61	37.7%	19	42.1%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PLEKHG4	25894	genome.wustl.edu	37	16	67314896	67314896	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001129727.1	+1	reviewed	p.R236Q	0.037	19	0%	46	32.6%	0	-	benign(0.072)	tolerated(0.45)	neutral(0.017)	NULL
RANBP10	57610	genome.wustl.edu	37	16	67763713	67763713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020850.1	-1	provisional	p.E339D	1.000	32	0%	69	49.3%	7	28.5%	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	HMMSmart_CTLH
ESRP2	80004	genome.wustl.edu	37	16	68267742	68267742	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024939.2	-1	validated	p.R162Q	1.000	31	0%	69	49.3%	7	42.8%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
SLC7A6	9057	genome.wustl.edu	37	16	68321725	68321725	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001076785.1	+1	validated	p.V200	1.000	53	0%	99	40.4%	1	0%	-	-	-	HMMPfam_AA_permease
PDXDC2P	283970	genome.wustl.edu	37	16	70076295	70076295	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000325845	-1	known	p.K40N	1.000	26	0%	44	38.6%	3	66.6%	-	-	-	superfamily_PLP-dependent transferases
ZFHX3	463	genome.wustl.edu	37	16	72827580	72827580	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006885.3	-1	reviewed	p.E3001*	1.000	31	0%	141	34.8%	6	66.6%	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
ZFHX3	463	genome.wustl.edu	37	16	72829616	72829616	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006885.3	-1	reviewed	p.R2322Q	1.000	30	0%	81	42%	4	25%	unknown(0)	-	-	superfamily_C2H2 and C2HC zinc fingers
ZFHX3	463	genome.wustl.edu	37	16	72993099	72993099	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006885.3	-1	reviewed	p.I316L	0.993	21	0%	73	34.2%	2	50%	unknown(0)	-	-	NULL
CLEC18B	497190	genome.wustl.edu	37	16	74447527	74447527	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001011880.2	-1	validated	p.C168	0.642	89	0%	364	15.7%	0	-	-	-	-	HMMSmart_SM00198,HMMPfam_SCP,superfamily_PR-1-like
ADAMTS18	170692	genome.wustl.edu	37	16	77317874	77317874	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199355.2	-1	reviewed	p.K1215N	0.998	49	0%	95	42.1%	0	-	benign(0.061)	tolerated(0.16)	neutral(0.064)	HMMPfam_PLAC
GAN	8139	genome.wustl.edu	37	16	81391484	81391484	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022041.3	+1	reviewed	p.I307	0.749	21	0%	112	40.2%	0	-	-	-	-	HMMSmart_Kelch,superfamily_Gal_oxid_central
USP10	9100	genome.wustl.edu	37	16	84778270	84778270	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000441926	+1	known	p.S41L	0.944	43	0%	113	40.7%	14	14.2%	unknown(0)	tolerated(0.13)	-	NULL
ZDHHC7	55625	genome.wustl.edu	37	16	85012880	85012880	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145548.1	-1	validated	p.R188I	0.999	74	0%	209	45.9%	15	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-DHHC
ANKFY1	51479	genome.wustl.edu	37	17	4085589	4085589	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016376.3	-1	validated	p.V671I	1.000	10	0%	40	37.5%	3	100%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
PELP1	27043	genome.wustl.edu	37	17	4578776	4578776	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000301396	-1	known	p.R461K	0.026	27	0%	20	35%	1	0%	unknown(0)	tolerated(1)	-	NULL
SLC13A5	284111	genome.wustl.edu	37	17	6599003	6599003	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000381074	-1	known	p.R307	0.005	17	0%	37	40.5%	0	-	-	-	-	NULL
RNASEK	440400	genome.wustl.edu	37	17	6917483	6917483	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004333.3	+1	validated	p.Y59D	1.000	17	0%	58	36.2%	840	48%	probably_damaging(0.998)	tolerated(0.93)	deleterious(0.474)	NULL
PHF23	79142	genome.wustl.edu	37	17	7140748	7140748	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024297.2	-1	validated	p.S39R	1.000	64	0%	120	33.3%	37	45.9%	benign(0.278)	deleterious(0)	deleterious(0.475)	NULL
YBX2	51087	genome.wustl.edu	37	17	7193024	7193024	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015982.3	-1	validated	p.R290H	1.000	18	0%	31	38.7%	0	-	benign(0.064)	deleterious(0.02)	neutral(0.387)	NULL
SPDYE4	388333	genome.wustl.edu	37	17	8656734	8656734	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128076.1	-1	provisional	p.N187D	0.001	23	0%	105	44.8%	0	-	benign(0)	tolerated(0.36)	neutral(0.020)	NULL
PIK3R5	23533	genome.wustl.edu	37	17	8788038	8788038	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142633.1	-1	validated	p.I731F	1.000	36	0%	34	32.4%	0	-	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	HMMPfam_PI3K_1B_p101
ARHGAP44	9912	genome.wustl.edu	37	17	12859200	12859200	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014859.4	+1	validated	p.L385V	1.000	110	0%	180	35.6%	2	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP
TEKT3	64518	genome.wustl.edu	37	17	15234553	15234553	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031898.2	-1	reviewed	p.S117L	0.997	125	0.8%	357	32.5%	0	-	possibly_damaging(0.594)	deleterious(0.01)	deleterious(0.611)	HMMPfam_Tektin
CDRT4	284040	genome.wustl.edu	37	17	15341372	15341372	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173622.3	-1	validated	p.E58D	0.148	38	0%	132	29.5%	14	64.2%	benign(0.105)	deleterious(0)	neutral(0.453)	NULL
ZNF286A	57335	genome.wustl.edu	37	17	15620327	15620327	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130842.1	+1	validated	p.R430I	1.000	130	0%	243	44%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
TRPV2	51393	genome.wustl.edu	37	17	16327045	16327045	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000455666	+1	known	p.A254T	0.013	14	0%	22	31.8%	5	60%	-	-	-	superfamily_Ankyrin repeat
FLCN	201163	genome.wustl.edu	37	17	17117129	17117129	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144997.5	-1	reviewed	p.R527Q	1.000	58	0%	160	38.8%	23	43.4%	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	NULL
TOM1L2	146691	genome.wustl.edu	37	17	17766126	17766126	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001082968.1	-1	validated	p.S374*	1.000	34	0%	102	31.4%	3	33.3%	-	-	-	NULL
ZNF286B	729288	genome.wustl.edu	37	17	18565527	18565527	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145045.1	-1	validated	p.R431I	1.000	172	0%	279	48%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
DHRS7B	25979	genome.wustl.edu	37	17	21094344	21094344	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015510.3	+1	validated	p.D286Y	1.000	43	0%	181	40.9%	205	44.8%	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	superfamily_NAD(P)-bd
SSH2	85464	genome.wustl.edu	37	17	27959123	27959123	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033389.2	-1	reviewed	p.L1003R	0.000	40	0%	111	35.1%	2	100%	benign(0.133)	deleterious(0)	neutral(0.456)	NULL
BLMH	642	genome.wustl.edu	37	17	28576142	28576142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000386.2	-1	reviewed	p.E421K	1.000	33	0%	84	38.1%	40	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_C1_2,superfamily_Cysteine proteinases
ATAD5	79915	genome.wustl.edu	37	17	29167781	29167781	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024857.3	+1	provisional	p.K741N	0.019	45	0%	62	38.7%	0	-	benign(0.255)	tolerated(0.12)	neutral(0.287)	NULL
RAB11FIP4	84440	genome.wustl.edu	37	17	29855653	29855653	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032932.3	+1	validated	p.R504W	1.000	14	0%	27	48.1%	32	37.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
RHOT1	55288	genome.wustl.edu	37	17	30526015	30526015	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033568.1	+1	validated	p.L307V	1.000	74	0%	168	46.4%	9	55.5%	benign(0.221)	tolerated(0.06)	neutral(0.345)	superfamily_SSF47473
ENSG00000226049	0	genome.wustl.edu	37	17	32365873	32365873	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000430493	-1	known	p.K282	1.000	106	0%	166	33.7%	1	0%	-	-	-	NULL
SLFN12L	100506736	genome.wustl.edu	37	17	33806325	33806325	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145027.1	-1	validated	p.N331H	0.001	94	0%	212	47.2%	0	-	probably_damaging(0.991)	tolerated(0.12)	deleterious(0.705)	HMMPfam_AAA_4
PIGW	284098	genome.wustl.edu	37	17	34893298	34893298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178517.3	+1	validated	p.F116L	1.000	74	0%	274	41.2%	5	40%	benign(0.157)	tolerated(0.66)	neutral(0.017)	NULL
GPR179	440435	genome.wustl.edu	37	17	36483731	36483731	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004334.2	-1	validated	p.S1907	0.016	29	0%	123	40.7%	0	-	-	-	-	NULL
MSL1	339287	genome.wustl.edu	37	17	38285497	38285497	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012241.1	+1	validated	e2-1	1.000	24	0%	59	39%	0	-	-	-	-	-
MSL1	339287	genome.wustl.edu	37	17	38289853	38289853	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012241.1	+1	validated	p.K278N	1.000	78	0%	136	31.6%	6	33.3%	probably_damaging(0.958)	deleterious(0.02)	deleterious(0.784)	NULL
KRT26	353288	genome.wustl.edu	37	17	38927477	38927477	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181539.4	-1	reviewed	p.A151	0.004	23	0%	87	41.4%	0	-	-	-	-	HMMPfam_Filament
BRCA1	672	genome.wustl.edu	37	17	41245921	41245921	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007294.3	-1	reviewed	p.G543C	0.000	69	0%	165	38.8%	0	-	benign(0.015)	deleterious(0.05)	neutral(0.346)	NULL
KANSL1	284058	genome.wustl.edu	37	17	44248500	44248500	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015443.2	-1	validated	p.S337Y	1.000	35	0%	63	38.1%	4	0%	possibly_damaging(0.931)	tolerated(0.06)	deleterious(0.700)	NULL
C17orf57	124989	genome.wustl.edu	37	17	45422455	45422455	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152347.3	+1	provisional	p.E170*	0.948	115	0%	180	45%	0	-	-	-	-	superfamily_EF-hand
LUC7L3	51747	genome.wustl.edu	37	17	48818516	48818516	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006107.3	+1	reviewed	p.R87Q	1.000	50	0%	182	39%	24	33.3%	possibly_damaging(0.827)	tolerated(0.18)	neutral(0.370)	HMMPfam_LUC7
ANKFN1	162282	genome.wustl.edu	37	17	54517705	54517705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153228.2	+1	validated	p.E313K	0.994	22	0%	79	32.9%	1	0%	benign(0)	tolerated(0.75)	neutral(0.002)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
SEPT4	5414	genome.wustl.edu	37	17	56599408	56599408	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004574.2	-1	reviewed	p.D239	0.968	45	0%	186	41.4%	4	0%	-	-	-	HMMPfam_Septin,superfamily_P-loop containing nucleoside triphosphate hydrolases
GDPD1	284161	genome.wustl.edu	37	17	57298000	57298000	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182569.3	+1	validated	p.L10	1.000	29	0%	95	22.1%	1	100%	-	-	-	NULL
EFCAB3	146779	genome.wustl.edu	37	17	60469295	60469295	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144933.1	+1	validated	p.V140	0.711	49	0%	216	35.2%	0	-	-	-	-	superfamily_EF-hand
TACO1	51204	genome.wustl.edu	37	17	61685164	61685164	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016360.3	+1	reviewed	p.F232L	1.000	22	0%	71	43.7%	62	41.9%	probably_damaging(0.998)	tolerated(0.08)	deleterious(0.774)	HMMPfam_DUF28,superfamily_YebC-like
DDX5	1655	genome.wustl.edu	37	17	62496309	62496309	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004396.3	-1	validated	p.F526C	1.000	26	0%	95	42.1%	449	49.6%	possibly_damaging(0.845)	tolerated(0.11)	deleterious(0.596)	HMMPfam_P68HR
ENSG00000232457	0	genome.wustl.edu	37	17	62950392	62950392	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000413214	+1	known	p.L51V	0.996	32	0%	81	25.9%	0	-	probably_damaging(0.979)	tolerated(0.18)	deleterious(0.478)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
AXIN2	8313	genome.wustl.edu	37	17	63554452	63554452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004655.3	-1	reviewed	p.R96Q	1.000	33	0%	106	45.3%	2	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
CEP112	201134	genome.wustl.edu	37	17	64172962	64172962	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145036.3	-1	validated	p.L95I	0.005	38	0%	190	31.6%	3	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PSMD12	5718	genome.wustl.edu	37	17	65337060	65337060	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002816.3	-1	reviewed	p.L424V	1.000	104	0%	223	48.4%	35	51.4%	benign(0)	tolerated(1)	-	HMMSmart_PINT,superfamily_SSF46785
ABCA6	23460	genome.wustl.edu	37	17	67101693	67101693	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080284.2	-1	reviewed	p.D884N	0.000	120	0%	124	41.1%	0	-	benign(0.01)	tolerated(0.28)	neutral(0.032)	NULL
ABCA5	23461	genome.wustl.edu	37	17	67298987	67298987	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018672.3	-1	reviewed	p.E331*	1.000	47	0%	55	36.4%	1	100%	-	-	-	NULL
C17orf80	55028	genome.wustl.edu	37	17	71232108	71232108	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017941.4	+1	validated	p.R163*	0.000	54	0%	88	35.2%	1	0%	-	-	-	NULL
ITGB4	3691	genome.wustl.edu	37	17	73753142	73753142	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000213.3	+1	reviewed	p.F1724	0.314	11	0%	29	34.5%	476	52.3%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
CDK3	1018	genome.wustl.edu	37	17	73997591	73997591	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001258.2	+1	validated	p.L29	1.000	27	0%	67	43.3%	6	16.6%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
PGS1	9489	genome.wustl.edu	37	17	76399861	76399861	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024419.3	+1	provisional	p.D365N	1.000	27	0%	55	41.8%	14	57.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
USP36	57602	genome.wustl.edu	37	17	76832320	76832320	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025090.3	-1	validated	p.F42	0.827	84	0%	104	41.3%	0	-	-	-	-	NULL
ENGASE	64772	genome.wustl.edu	37	17	77073544	77073544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042573.1	+1	validated	p.R60Q	0.569	81	1.2%	175	37.7%	2	0%	possibly_damaging(0.805)	tolerated(0.05)	deleterious(0.648)	NULL
YES1	7525	genome.wustl.edu	37	18	751726	751726	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005433.3	-1	reviewed	p.R117I	1.000	204	0%	265	40%	2	100%	benign(0.012)	tolerated(0.28)	neutral(0.032)	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3
ZFP161	7541	genome.wustl.edu	37	18	5292173	5292173	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143823.1	-1	validated	p.K12Q	1.000	27	0%	49	42.9%	4	75%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	superfamily_BTB/POZ_fold
EPB41L3	23136	genome.wustl.edu	37	18	5433921	5433921	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012307.2	-1	provisional	p.E269K	1.000	66	0%	287	41.1%	0	-	possibly_damaging(0.786)	deleterious(0.03)	deleterious(0.659)	HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295
PTPRM	5797	genome.wustl.edu	37	18	8069731	8069731	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105244.1	+1	reviewed	p.R394W	1.000	42	0%	77	37.7%	0	-	benign(0.048)	deleterious(0)	neutral(0.448)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
SOGA2	23255	genome.wustl.edu	37	18	8718434	8718434	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000456698	+1	known	p.E356*	1.000	41	0%	92	44.6%	0	-	-	-	-	NULL
ANKRD12	23253	genome.wustl.edu	37	18	9281074	9281074	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015208.3	+1	validated	p.Y2047H	1.000	22	0%	97	39.2%	9	77.7%	probably_damaging(0.998)	tolerated(0.11)	deleterious(0.746)	superfamily_Ankyrin repeat
TXNDC2	84203	genome.wustl.edu	37	18	9887154	9887154	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098529.1	+1	validated	p.K226N	0.000	104	0%	225	38.2%	0	-	-	-	-	NULL
ANKRD30B	374860	genome.wustl.edu	37	18	14797804	14797804	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145029.1	+1	validated	p.S660	0.002	383	0%	489	36.4%	0	-	-	-	-	NULL
ESCO1	114799	genome.wustl.edu	37	18	19154028	19154028	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052911.2	-1	validated	p.K259N	0.175	55	0%	141	39%	3	33.3%	benign(0.411)	deleterious(0.01)	deleterious(0.538)	NULL
MIR1-2	406905	genome.wustl.edu	37	18	19409028	19409028	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000384961	-1	known	NULL	1.000	72	0%	175	50.3%	0	-	-	-	-	-
TAF4B	6875	genome.wustl.edu	37	18	23895277	23895277	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005640.1	+1	validated	p.S639	1.000	31	0%	103	36.9%	3	66.6%	-	-	-	HMMPfam_TAF4
DSG1	1828	genome.wustl.edu	37	18	28919913	28919913	+	Missense_Mutation	SNP	G	G	T	rs34302455	byCluster;byFrequency;by1000genomes	TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001942.2	+1	reviewed	p.D538Y	0.000	51	0%	75	32%	0	-	benign(0)	deleterious(0.04)	neutral(0.349)	NULL
DSG3	1830	genome.wustl.edu	37	18	29041236	29041236	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001944.2	+1	reviewed	p.R287Q	0.918	69	0%	153	38.6%	0	-	probably_damaging(0.999)	tolerated(0.23)	deleterious(0.532)	HMMPfam_Cadherin,superfamily_Cadherin
DSG3	1830	genome.wustl.edu	37	18	29056170	29056170	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001944.2	+1	reviewed	p.R983*	0.000	17	0%	64	32.8%	0	-	-	-	-	NULL
ASXL3	80816	genome.wustl.edu	37	18	31187633	31187633	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030632.1	+1	provisional	p.E44*	1.000	82	0%	68	39.7%	0	-	-	-	-	NULL
RPRD1A	55197	genome.wustl.edu	37	18	33610844	33610844	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018170.3	-1	provisional	p.R138Q	1.000	79	0%	324	39.2%	9	55.5%	probably_damaging(0.971)	tolerated(0.28)	neutral(0.445)	superfamily_ENTH/VHS domain
SLC39A6	25800	genome.wustl.edu	37	18	33689610	33689610	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012319.3	-1	validated	p.I738	0.993	99	0%	119	37%	19	52.6%	-	-	-	HMMPfam_Zip
EPG5	57724	genome.wustl.edu	37	18	43467725	43467725	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020964.2	-1	validated	p.I1700	1.000	45	0%	98	34.7%	1	0%	-	-	-	NULL
CCDC11	220136	genome.wustl.edu	37	18	47787603	47787603	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145020.3	-1	validated	p.R102C	1.000	202	0%	225	40%	6	16.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
MBD1	4152	genome.wustl.edu	37	18	47800597	47800597	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015846.3	-1	reviewed	p.R369C	1.000	38	0%	23	43.5%	15	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-CXXC
POLI	11201	genome.wustl.edu	37	18	51795958	51795960	+	In_Frame_Del	DEL	CGA	CGA	-	rs10584411	byCluster;by1000genomes	TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	CGA	CGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007195.2	+1	validated	p.D17in_frame_del	0.000:0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
CCDC68	80323	genome.wustl.edu	37	18	52585187	52585187	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143829.1	-1	validated	p.R277I	0.990	162	0%	294	41.8%	0	-	possibly_damaging(0.538)	tolerated(0.65)	neutral(0.185)	NULL
WDR7	23335	genome.wustl.edu	37	18	54424511	54424511	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015285.2	+1	reviewed	p.S896Y	1.000	23	0%	53	52.8%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CDH7	1005	genome.wustl.edu	37	18	63492035	63492035	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004361.2	+1	reviewed	p.E317*	1.000	66	0%	203	35.5%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
ZNF407	55628	genome.wustl.edu	37	18	72343485	72343485	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017757.2	+1	reviewed	p.P170	0.001	40	0%	99	40.4%	0	-	-	-	-	NULL
ADNP2	22850	genome.wustl.edu	37	18	77894088	77894088	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014913.3	+1	validated	p.T264	0.984	27	0%	40	45%	4	0%	-	-	-	NULL
ATP8B3	148229	genome.wustl.edu	37	19	1783264	1783264	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138813.2	-1	reviewed	p.E1222D	0.001	16	0%	40	37.5%	2	0%	benign(0.073)	tolerated(0.6)	neutral(0.009)	NULL
TLE2	7089	genome.wustl.edu	37	19	3002502	3002502	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003260.4	-1	validated	e18-1	1.000	15	0%	48	37.5%	1	100%	-	-	-	-
CHAF1A	10036	genome.wustl.edu	37	19	4418031	4418031	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005483.2	+1	validated	p.F325	0.027	99	0%	239	48.5%	6	50%	-	-	-	NULL
DPP9	91039	genome.wustl.edu	37	19	4679903	4679903	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139159.4	-1	reviewed	p.H844Y	1.000	42	0%	172	32%	33	42.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_S9,superfamily_SSF53474
SAFB	6294	genome.wustl.edu	37	19	5654384	5654384	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002967.2	+1	reviewed	p.R558*	0.493	66	1.5%	172	36%	48	10.4%	-	-	-	superfamily_SSF54928
DUS3L	56931	genome.wustl.edu	37	19	5790085	5790085	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020175.2	-1	validated	p.K120N	0.873	26	0%	103	39.8%	11	72.7%	benign(0.008)	tolerated(0.4)	neutral(0.016)	HMMPfam_zf-CCCH,superfamily_CCCH zinc finger
PNPLA6	10908	genome.wustl.edu	37	19	7625638	7625638	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006702.4	+1	reviewed	p.S1230	1.000	32	0%	26	50%	110	47.2%	-	-	-	NULL
XAB2	56949	genome.wustl.edu	37	19	7693137	7693137	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020196.2	-1	validated	p.F33L	1.000	27	0%	56	41.1%	11	63.6%	benign(0.008)	tolerated(0.58)	neutral(0.005)	NULL
C19orf59	199675	genome.wustl.edu	37	19	7742531	7742531	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174918.2	+1	reviewed	p.D35Y	0.411	46	0%	37	29.7%	0	-	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	NULL
KANK3	256949	genome.wustl.edu	37	19	8389377	8389377	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198471.2	-1	validated	p.A780T	0.831	8	0.000	16	0.438	5	0%	possibly_damaging(0.93)	tolerated(0.13)	deleterious(0.629)	superfamily_ANK
MUC16	94025	genome.wustl.edu	37	19	9068988	9068988	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.K6153T	0.001	103	0%	33	48.5%	0	-	unknown(0)	-	-	NULL
ZNF559	84527	genome.wustl.edu	37	19	9453497	9453497	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032497.1	+1	provisional	p.R457I	0.350	43	0%	92	43.5%	5	60%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
EPOR	2057	genome.wustl.edu	37	19	11489375	11489375	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000121.3	-1	reviewed	p.N303H	0.942	35	0%	73	42.5%	6	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ZNF441	126068	genome.wustl.edu	37	19	11891286	11891286	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152355.2	+1	validated	p.R216I	0.082	56	0%	194	43.3%	1	0%	benign(0.041)	tolerated(0.14)	neutral(0.252)	superfamily_C2H2 and C2HC zinc fingers
ZNF441	126068	genome.wustl.edu	37	19	11891858	11891858	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152355.2	+1	validated	p.R407*	0.000	77	0%	148	14.2%	0	-	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF878	729747	genome.wustl.edu	37	19	12155560	12155560	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080404.1	-1	inferred	p.R266I	0.002	106	0%	291	41.9%	1	0%	probably_damaging(0.993)	tolerated(0.15)	deleterious(0.691)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ENSG00000188474	0	genome.wustl.edu	37	19	12223741	12223741	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000339302	+1	known	p.S460F	0.000	15	0%	56	41.1%	2	50%	benign(0.115)	tolerated(0.65)	neutral(0.012)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF20	7568	genome.wustl.edu	37	19	12244190	12244190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021143.2	-1	validated	p.R271C	0.002	68	0%	168	38.1%	4	25%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF442	79973	genome.wustl.edu	37	19	12461473	12461473	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030824.2	-1	validated	p.R309Q	0.000	99	0%	300	46%	1	100%	benign(0.151)	tolerated(0.51)	neutral(0.022)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF709	163051	genome.wustl.edu	37	19	12575333	12575333	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152601.3	-1	validated	p.R468I	0.000	85	0%	198	33.8%	1	100%	possibly_damaging(0.894)	tolerated(0.2)	neutral(0.401)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF709	163051	genome.wustl.edu	37	19	12576177	12576177	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152601.3	-1	validated	p.E187*	0.977	99	0%	192	41.7%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
MAST1	22983	genome.wustl.edu	37	19	12954346	12954346	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014975.2	+1	validated	p.A84	0.990	13	0%	35	45.7%	0	-	-	-	-	HMMPfam_DUF1908
FARSA	2193	genome.wustl.edu	37	19	13035456	13035456	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004461.2	-1	validated	p.L398M	1.000	15	0%	39	43.6%	142	45%	probably_damaging(0.956)	tolerated(0.88)	neutral(0.400)	HMMPfam_tRNA-synt_2d,superfamily_Class II aaRS and biotin synthetases
OR7A10	390892	genome.wustl.edu	37	19	14951778	14951778	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005190.1	-1	provisional	p.F304L	0.000	43	0%	137	39.4%	0	-	benign(0.001)	tolerated(1)	-	superfamily_SSF81321
BRD4	23476	genome.wustl.edu	37	19	15350022	15350022	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_058243.2	-1	reviewed	p.P1210	0.883	10	0%	42	38.1%	62	50%	-	-	-	NULL
LOC646575	646575	genome.wustl.edu	37	19	15775169	15775169	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343630.1	+1	model	p.F18	0.964	48	0%	156	33.3%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
CYP4F12	66002	genome.wustl.edu	37	19	15795988	15795988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023944.2	+1	reviewed	p.D366N	0.001	34	0%	118	37.3%	0	-	possibly_damaging(0.594)	deleterious(0)	deleterious(0.649)	HMMPfam_p450,superfamily_Cytochrome P450
CPAMD8	27151	genome.wustl.edu	37	19	17039896	17039896	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000443236	-1	known	p.S1058L	0.973	19	0%	48	50%	30	36.6%	-	-	-	NULL
B3GNT3	10331	genome.wustl.edu	37	19	17922728	17922728	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014256.3	+1	reviewed	p.L306F	0.002	21	0%	35	37.1%	147	52.3%	possibly_damaging(0.441)	deleterious(0.03)	deleterious(0.508)	HMMPfam_Galactosyl_T
RAB3A	5864	genome.wustl.edu	37	19	18308466	18308466	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002866.4	-1	validated	p.F159	0.888	21	0%	70	32.9%	23	56.5%	-	-	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
LRRC25	126364	genome.wustl.edu	37	19	18507667	18507667	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145256.2	-1	validated	p.A36V	0.000	18	0%	23	26.1%	2	50%	benign(0)	tolerated(0.3)	neutral(0.029)	NULL
ARMC6	93436	genome.wustl.edu	37	19	19162549	19162549	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033415.2	+1	reviewed	p.Q108R	1.000	25	0%	28	32.1%	40	60%	benign(0.15)	tolerated(0.11)	neutral(0.285)	superfamily_ARM repeat
ATP13A1	57130	genome.wustl.edu	37	19	19762514	19762514	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020410.2	-1	validated	p.Q773H	1.000	51	0%	93	39.8%	81	38.2%	possibly_damaging(0.795)	tolerated(0.12)	deleterious(0.559)	superfamily_HAD-like
ZNF14	7561	genome.wustl.edu	37	19	19822670	19822670	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021030.2	-1	reviewed	p.P474S	1.000	65	0%	111	39.6%	3	66.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_SSF57667
ZNF90	7643	genome.wustl.edu	37	19	20229025	20229025	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007138.1	+1	validated	p.R221I	0.996	110	0%	135	37.8%	0	-	benign(0.001)	tolerated(0.18)	neutral(0.056)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF429	353088	genome.wustl.edu	37	19	21719853	21719853	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001415.2	+1	provisional	p.R333I	0.998	62	0%	67	44.8%	5	0%	benign(0.079)	tolerated(0.17)	neutral(0.065)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF100	163227	genome.wustl.edu	37	19	21909963	21909963	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173531.3	-1	validated	p.R384Q	0.001	53	1.9%	90	41.1%	2	0%	benign(0.01)	tolerated(0.8)	neutral(0.001)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF100	163227	genome.wustl.edu	37	19	21910440	21910440	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173531.3	-1	validated	p.R225I	0.794	133	0%	195	42.6%	0	-	benign(0.001)	tolerated(0.1)	neutral(0.286)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF43	7594	genome.wustl.edu	37	19	21992001	21992001	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003423.2	-1	validated	p.R280S	0.991	105	1%	110	44.5%	0	-	possibly_damaging(0.688)	deleterious(0)	deleterious(0.691)	superfamily_C2H2 and C2HC zinc fingers
ZNF208	7757	genome.wustl.edu	37	19	22155698	22155698	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007153.3	-1	provisional	p.R613K	0.994	95	0%	121	32.2%	0	-	benign(0.011)	tolerated(1)	neutral(0.001)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF257	113835	genome.wustl.edu	37	19	22271727	22271727	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033468.2	+1	provisional	p.R392I	1.000	76	0%	145	46.9%	0	-	benign(0)	tolerated(0.35)	neutral(0.021)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC100287226	100287226	genome.wustl.edu	37	19	22497215	22497215	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343636.1	+1	model	p.F199L	0.000	42	0%	56	44.6%	0	-	benign(0.119)	tolerated(0.67)	neutral(0.012)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC100287226	100287226	genome.wustl.edu	37	19	22497853	22497853	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343636.1	+1	model	p.K412T	0.004	37	0%	47	38.3%	0	-	benign(0.294)	tolerated(0.07)	neutral(0.410)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF98	148198	genome.wustl.edu	37	19	22575054	22575054	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098626.1	-1	validated	p.G328V	1.000	70	0%	105	30.5%	0	-	possibly_damaging(0.946)	deleterious(0)	deleterious(0.835)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ENSG00000235276	0	genome.wustl.edu	37	19	22782265	22782265	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000421840	+1	known	p.R11I	0.949	24	0%	34	38.2%	0	-	-	-	-	NULL
ZNF492	57615	genome.wustl.edu	37	19	22847240	22847240	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020855.2	+1	validated	p.E257*	0.003	95	0%	123	22.8%	1	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ANKRD27	84079	genome.wustl.edu	37	19	33119684	33119684	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032139.2	-1	validated	p.V427	0.484	39	0%	189	39.7%	3	66.6%	-	-	-	superfamily_ANK
ZNF302	55900	genome.wustl.edu	37	19	35175828	35175828	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012320.1	+1	validated	p.R296C	0.001	70	0%	103	36.9%	6	66.6%	probably_damaging(1)	tolerated(0.23)	deleterious(0.541)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
FFAR3	2865	genome.wustl.edu	37	19	35850077	35850077	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005304.3	+1	validated	p.F95L	1.000	93	0%	389	19.5%	0	-	possibly_damaging(0.929)	deleterious(0.03)	deleterious(0.740)	HMMPfam_7tm_1,superfamily_SSF81321
ZNF461	92283	genome.wustl.edu	37	19	37129946	37129946	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153257.2	-1	validated	p.I434S	0.457	69	0%	152	36.8%	5	60%	probably_damaging(0.992)	deleterious(0.03)	deleterious(0.812)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF461	92283	genome.wustl.edu	37	19	37130369	37130369	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153257.2	-1	validated	p.R293K	1.000	97	0%	214	38.3%	3	66.6%	benign(0.001)	tolerated(0.13)	neutral(0.253)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF567	163081	genome.wustl.edu	37	19	37210426	37210426	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152603.2	+1	provisional	p.V236A	0.905	39	0%	64	42.2%	3	33.3%	possibly_damaging(0.596)	tolerated(0.65)	neutral(0.209)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF790	388536	genome.wustl.edu	37	19	37310530	37310530	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206894.2	-1	validated	p.S239L	0.001	77	0%	126	34.9%	0	-	benign(0.202)	deleterious(0.02)	neutral(0.403)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF585B	92285	genome.wustl.edu	37	19	37676830	37676830	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152279.3	-1	validated	p.L537I	0.070	90	0%	217	41.9%	5	20%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF383	163087	genome.wustl.edu	37	19	37733380	37733380	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152604.1	+1	provisional	p.S81L	0.983	32	0%	70	40%	2	100%	benign(0.076)	tolerated(0.11)	neutral(0.277)	NULL
ZNF571	51276	genome.wustl.edu	37	19	38055708	38055708	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016536.3	-1	validated	p.R541H	0.001	74	0%	134	46.3%	0	-	benign(0.037)	tolerated(0.7)	neutral(0.004)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
WDR87	83889	genome.wustl.edu	37	19	38384713	38384713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031951.3	-1	provisional	p.V505I	0.000	19	0%	42	45.2%	0	-	benign(0.091)	-	-	superfamily_WD40 repeat-like
SIPA1L3	23094	genome.wustl.edu	37	19	38692533	38692533	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015073.1	+1	validated	p.N1672	0.303	25	0%	42	50%	28	57.1%	-	-	-	NULL
FBXO17	115290	genome.wustl.edu	37	19	39439261	39439261	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148169.1	-1	reviewed	p.N145S	0.951	47	0%	66	31.8%	1	0%	possibly_damaging(0.666)	tolerated(0.35)	neutral(0.257)	HMMPfam_FBA,superfamily_Galactose-binding domain-like
CYP2A6	1548	genome.wustl.edu	37	19	41350638	41350638	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000762.5	-1	reviewed	p.D401Y	0.996	46	0%	162	35.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_p450,superfamily_Cytochrome P450
ENSG00000198251	0	genome.wustl.edu	37	19	41416527	41416527	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000359667	-1	known	p.F25	0.997	17	0%	56	37.5%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
CYP2F1	1572	genome.wustl.edu	37	19	41627430	41627430	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000774.3	+1	reviewed	p.F184	1.000	29	0%	65	44.6%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
AXL	558	genome.wustl.edu	37	19	41762496	41762496	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021913.3	+1	reviewed	p.Y726H	1.000	33	0%	65	44.6%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
ATP1A3	478	genome.wustl.edu	37	19	42485962	42485962	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152296.3	-1	reviewed	p.S405L	0.998	37	0%	78	32.1%	0	-	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	HMMPfam_Hydrolase,superfamily_SSF56784,superfamily_SSF81660,superfamily_SSF81665
POU2F2	5452	genome.wustl.edu	37	19	42626521	42626521	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002698.2	-1	validated	p.R35I	1.000	44	0%	161	35.4%	0	-	possibly_damaging(0.862)	deleterious(0)	deleterious(0.778)	NULL
LIPE	3991	genome.wustl.edu	37	19	42931209	42931209	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005357.2	-1	reviewed	p.K31N	0.005	55	1.8%	206	33.5%	0	-	benign(0)	tolerated(0.13)	neutral(0.253)	NULL
PSG8	440533	genome.wustl.edu	37	19	43268190	43268190	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182707.2	-1	validated	p.S103Y	0.043	89	0%	351	37.3%	0	-	benign(0.014)	tolerated(0.08)	neutral(0.300)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
KCNN4	3783	genome.wustl.edu	37	19	44284948	44284948	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002250.2	-1	reviewed	p.E22D	1.000	43	0%	86	40.7%	19	57.8%	possibly_damaging(0.902)	deleterious(0)	deleterious(0.801)	HMMPfam_SK_channel
ZNF285	26974	genome.wustl.edu	37	19	44896585	44896585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152354.3	-1	validated	p.E21K	0.980	32	0%	134	44%	0	-	benign(0.135)	deleterious(0)	neutral(0.456)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
SULT2A1	6822	genome.wustl.edu	37	19	48382322	48382322	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003167.3	-1	reviewed	p.L180	0.777	26	0%	108	40.7%	0	-	-	-	-	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
PLA2G4C	8605	genome.wustl.edu	37	19	48602985	48602985	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003706.2	-1	reviewed	p.E130D	0.093	28	0%	103	49.5%	1	100%	benign(0.275)	tolerated(0.29)	neutral(0.058)	HMMSmart_PLAc,superfamily_Acyl_Trfase/lysoPlipase
KCNJ14	3770	genome.wustl.edu	37	19	48967513	48967513	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013348.2	+1	reviewed	p.D264N	1.000	43	0%	97	40.2%	1	100%	probably_damaging(1)	tolerated(0.2)	deleterious(0.549)	HMMPfam_IRK,superfamily_Ig_E-set
KCNA7	3743	genome.wustl.edu	37	19	49573328	49573328	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031886.2	-1	reviewed	p.E455K	0.969	12	0%	21	42.9%	0	-	possibly_damaging(0.565)	deleterious(0)	deleterious(0.637)	NULL
ACPT	93650	genome.wustl.edu	37	19	51297164	51297164	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033068.2	+1	reviewed	p.I266	1.000	19	0%	67	35.8%	0	-	-	-	-	HMMPfam_Acid_phosphat_A,superfamily_Phosphoglycerate mutase-like
ZNF577	84765	genome.wustl.edu	37	19	52376924	52376924	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032679.2	-1	validated	p.D107Y	0.010	24	0%	80	35%	0	-	probably_damaging(0.978)	tolerated(0.08)	deleterious(0.720)	NULL
ZNF649	65251	genome.wustl.edu	37	19	52394796	52394796	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023074.3	-1	validated	p.R198I	0.001	59	0%	181	42.5%	6	16.6%	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ENSG00000249246	0	genome.wustl.edu	37	19	52562314	52562314	+	RNA	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000514408	-1	known	NULL	0.004	51	0%	44	52.3%	0	-	-	-	-	-
ZNF836	162962	genome.wustl.edu	37	19	52659047	52659047	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102657.1	-1	provisional	p.R630I	0.017	67	0%	130	34.6%	4	25%	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
VN1R4	317703	genome.wustl.edu	37	19	53770667	53770667	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173857.2	-1	validated	p.F84L	0.043	22	0%	35	25.7%	0	-	possibly_damaging(0.523)	tolerated(0.62)	neutral(0.180)	HMMPfam_V1R,superfamily_Family A G protein-coupled receptor-like
ZNF845	91664	genome.wustl.edu	37	19	53855866	53855866	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138374.1	+1	validated	p.F646L	0.000	67	0%	111	49.5%	1	100%	benign(0.042)	tolerated(0.62)	neutral(0.007)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CACNG7	59284	genome.wustl.edu	37	19	54445391	54445391	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031896.3	+1	reviewed	p.C224	1.000	23	0%	29	31%	0	-	-	-	-	NULL
TMC4	147798	genome.wustl.edu	37	19	54664667	54664667	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145303.1	-1	validated	p.L647I	0.276	65	0%	64	35.9%	339	50.1%	unknown(0)	deleterious(0)	-	NULL
TNNT1	7138	genome.wustl.edu	37	19	55649407	55649407	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003283.4	-1	reviewed	p.K141N	1.000	41	0%	178	38.2%	6	100%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Troponin
PTPRH	5794	genome.wustl.edu	37	19	55713543	55713543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002842.3	-1	validated	p.S345N	0.000	51	0%	195	35.9%	1	0%	benign(0.009)	tolerated(0.51)	neutral(0.009)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
ZNF583	147949	genome.wustl.edu	37	19	56935000	56935000	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152478.2	+1	validated	p.E325K	0.002	107	0%	210	38.6%	2	0%	probably_damaging(0.999)	tolerated(0.56)	deleterious(0.497)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF749	388567	genome.wustl.edu	37	19	57954673	57954673	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001023561.2	+1	provisional	p.A53S	0.000	21	0%	73	43.8%	2	50%	benign(0.199)	tolerated(0.77)	neutral(0.020)	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF549	256051	genome.wustl.edu	37	19	58048770	58048770	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153263.1	+1	provisional	p.T120M	0.000	27	0%	81	39.5%	1	0%	probably_damaging(1)	tolerated(0.28)	deleterious(0.531)	superfamily_C2H2 and C2HC zinc fingers
ZNF416	55659	genome.wustl.edu	37	19	58084034	58084034	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017879.1	-1	provisional	p.G413V	0.000	54	0%	129	44.2%	3	33.3%	probably_damaging(0.953)	tolerated(0.12)	deleterious(0.657)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF551	90233	genome.wustl.edu	37	19	58198582	58198582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138347.3	+1	validated	p.E297D	0.985	38	0%	75	25.3%	0	-	benign(0.156)	deleterious(0.02)	neutral(0.397)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF154	7710	genome.wustl.edu	37	19	58213008	58213008	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085384.1	-1	validated	p.R437*	0.002	51	0%	128	35.9%	0	-	-	-	-	NULL
ZNF552	79818	genome.wustl.edu	37	19	58320200	58320200	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024762.3	-1	validated	p.E144D	1.000	97	0%	311	34.1%	3	66.6%	possibly_damaging(0.529)	tolerated(0.1)	neutral(0.465)	superfamily_C2H2 and C2HC zinc fingers
RPS5	6193	genome.wustl.edu	37	19	58904474	58904474	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009.3	+1	reviewed	p.G80	0.964	22	0%	35	25.7%	4452	47.5%	-	-	-	HMMPfam_Ribosomal_S7,PatternScan_RIBOSOMAL_S7,superfamily_Ribosomal protein S7
NSFL1C	55968	genome.wustl.edu	37	20	1426360	1426360	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016143.3	-1	reviewed	p.R301W	1.000	37	0%	125	41.6%	142	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UBX,HMMSmart_SM00166,superfamily_Ubiquitin-like
NSFL1C	55968	genome.wustl.edu	37	20	1445016	1445016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016143.3	-1	reviewed	p.S54L	1.000	20	0%	70	41.4%	53	41.5%	possibly_damaging(0.528)	tolerated(0.21)	neutral(0.222)	NULL
TGM6	343641	genome.wustl.edu	37	20	2413137	2413137	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198994.2	+1	validated	p.V657M	0.984	14	0%	43	41.9%	0	-	benign(0.066)	tolerated(0.08)	neutral(0.304)	HMMPfam_Transglut_C,superfamily_Transglutaminase two C-terminal domains
CPXM1	56265	genome.wustl.edu	37	20	2777048	2777048	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019609.4	-1	reviewed	p.E363K	1.000	34	0%	64	37.5%	9	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_M14,PatternScan_CARBOXYPEPT_ZN_1,superfamily_Zn-dependent exopeptidases
PTPRA	5786	genome.wustl.edu	37	20	3002792	3002792	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002836.3	+1	reviewed	p.I418	0.960	40	0%	78	35.9%	39	41%	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
PLCB1	23236	genome.wustl.edu	37	20	8769164	8769164	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015192.2	+1	reviewed	p.I1060	1.000	85	0%	145	42.8%	1	0%	-	-	-	HMMPfam_PLC-beta_C
PLCB4	5332	genome.wustl.edu	37	20	9416241	9416241	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000933.3	+1	reviewed	p.F841	1.000	77	1.3%	221	32.6%	14	64.2%	-	-	-	NULL
ANKRD5	63926	genome.wustl.edu	37	20	10035177	10035177	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022096.4	+1	validated	p.V701A	1.000	77	0%	130	31.5%	3	100%	possibly_damaging(0.653)	deleterious(0.01)	deleterious(0.635)	NULL
TASP1	55617	genome.wustl.edu	37	20	13539737	13539737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017714.2	-1	reviewed	p.R198I	1.000	148	0%	334	44.9%	1	0%	possibly_damaging(0.788)	deleterious(0.03)	deleterious(0.659)	HMMPfam_Asparaginase_2,superfamily_SSF56235
MACROD2	140733	genome.wustl.edu	37	20	15913928	15913928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080676.5	+1	validated	p.N261K	0.185	70	0%	110	33.6%	0	-	possibly_damaging(0.482)	tolerated(0.11)	neutral(0.431)	NULL
SNRPB2	6629	genome.wustl.edu	37	20	16712971	16712971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003092.3	+1	reviewed	p.G76D	1.000	53	0%	143	49.7%	41	46.3%	benign(0.003)	tolerated(1)	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
BFSP1	631	genome.wustl.edu	37	20	17475613	17475613	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001195.3	-1	reviewed	p.K368	1.000	135	0%	426	38%	1	100%	-	-	-	NULL
RRBP1	6238	genome.wustl.edu	37	20	17622506	17622506	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042576.1	-1	reviewed	p.K274T	1.000	60	0%	89	42.7%	149	50.3%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
SEC23B	10483	genome.wustl.edu	37	20	18508162	18508162	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006363.4	+1	reviewed	p.R339Q	1.000	43	0%	206	39.3%	33	48.4%	probably_damaging(0.998)	tolerated(0.31)	deleterious(0.501)	HMMPfam_Sec23_trunk,superfamily_SSF53300,superfamily_SSF81995
C20orf26	26074	genome.wustl.edu	37	20	20269276	20269276	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015585.3	+1	validated	p.K940N	1.000	18	0%	60	45%	7	57.1%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_FAD/NAD(P)-binding domain
CD93	22918	genome.wustl.edu	37	20	23066086	23066086	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012072.3	-1	reviewed	p.F248	0.000	16	0%	52	34.6%	2	0%	-	-	-	NULL
CSTL1	128817	genome.wustl.edu	37	20	23421021	23421021	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138283.1	+1	reviewed	p.K39N	0.013	32	0%	76	43.4%	0	-	benign(0.071)	deleterious(0.02)	neutral(0.388)	HMMSmart_CY,superfamily_SSF54403
EFCAB8	388795	genome.wustl.edu	37	20	31486376	31486376	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000440534	+1	known	p.E345D	0.002	26	0%	98	41.8%	0	-	benign(0)	tolerated(0.66)	neutral(0.003)	superfamily_WD40 repeat-like
BPIFB1	92747	genome.wustl.edu	37	20	31890752	31890752	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033197.2	+1	reviewed	p.V338M	0.691	20	0%	45	31.1%	681	30.9%	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	superfamily_Bactericidal permeability-increasing protein BPI
ZNF341	84905	genome.wustl.edu	37	20	32371618	32371618	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032819.3	+1	validated	p.K593N	1.000	12	0%	45	33.3%	1	100%	possibly_damaging(0.751)	tolerated(0.16)	neutral(0.335)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
CEP250	11190	genome.wustl.edu	37	20	34099444	34099444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007186.3	+1	reviewed	p.A2440T	0.001	30	0%	25	28%	44	47.7%	benign(0)	tolerated(1)	-	NULL
C20orf173	140873	genome.wustl.edu	37	20	34116753	34116753	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000246199	-1	known	p.L36I	0.000	31	0%	63	42.9%	0	-	possibly_damaging(0.763)	-	-	NULL
RBL1	5933	genome.wustl.edu	37	20	35695516	35695516	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002895.2	-1	reviewed	p.R189W	1.000	93	0%	151	43%	2	0%	probably_damaging(0.997)	tolerated(0.06)	deleterious(0.788)	NULL
LBP	3929	genome.wustl.edu	37	20	37001732	37001732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004139.2	+1	reviewed	p.A426V	0.084	27	0%	127	40.2%	0	-	benign(0.022)	tolerated(0.25)	neutral(0.038)	HMMPfam_LBP_BPI_CETP_C,HMMSmart_SM00329,superfamily_Bactericidal permeability-increasing protein BPI
TOP1	7150	genome.wustl.edu	37	20	39745020	39745020	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003286.2	+1	reviewed	p.E604*	1.000	15	0%	81	39.5%	34	8.8%	-	-	-	superfamily_DNA breaking-rejoining enzymes,HMMSmart_SM00435,HMMPfam_Topoisom_I
MYBL2	4605	genome.wustl.edu	37	20	42320898	42320898	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002466.2	+1	reviewed	p.Y201C	0.999	24	0%	42	31%	16	31.2%	probably_damaging(0.999)	tolerated(0.17)	deleterious(0.549)	NULL
SEMG1	6406	genome.wustl.edu	37	20	43836952	43836952	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003007.3	+1	reviewed	p.E338	0.000	77	0%	93	36.6%	0	-	-	-	-	HMMPfam_Semenogelin
PLTP	5360	genome.wustl.edu	37	20	44536337	44536337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006227.2	-1	reviewed	p.V203M	0.989	40	0%	42	42.9%	572	46.1%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMSmart_SM00328,superfamily_Bactericidal permeability-increasing protein BPI
CD40	958	genome.wustl.edu	37	20	44757180	44757180	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000372278	+1	known	p.E62*	0.002	23	0%	35	42.9%	0	-	-	-	-	NULL
ENSG00000245952	0	genome.wustl.edu	37	20	47274588	47274588	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000456747	+1	known	NULL	0.000	132	0%	60	36.7%	0	-	-	-	-	-
ARFGEF2	10564	genome.wustl.edu	37	20	47589780	47589780	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006420.2	+1	reviewed	p.Q542*	1.000	50	0%	162	40.7%	2	0%	-	-	-	superfamily_ARM-type_fold
ARFGEF2	10564	genome.wustl.edu	37	20	47612370	47612370	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006420.2	+1	reviewed	p.E1058*	1.000	66	0%	237	38.8%	0	-	-	-	-	superfamily_ARM-type_fold
ADNP	23394	genome.wustl.edu	37	20	49508433	49508433	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015339.2	-1	reviewed	p.H940N	0.938	49	0%	134	43.3%	42	45.2%	benign(0.003)	deleterious(0)	neutral(0.445)	NULL
CTSZ	1522	genome.wustl.edu	37	20	57572773	57572773	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001336.3	-1	reviewed	p.E175*	0.616	47	0%	164	43.3%	142	5.6%	-	-	-	HMMPfam_Peptidase_C1,HMMSmart_SM00645,superfamily_Cysteine proteinases
CDH4	1002	genome.wustl.edu	37	20	60503310	60503310	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001794.2	+1	reviewed	p.A612T	1.000	26	0%	21	33.3%	0	-	benign(0.278)	deleterious(0.01)	neutral(0.435)	HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin
C20orf166	128826	genome.wustl.edu	37	20	61167681	61167681	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178463.3	+1	validated	p.E51*	0.007	44	0%	88	45.5%	0	-	-	-	-	NULL
TCFL5	10732	genome.wustl.edu	37	20	61485378	61485378	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006602.2	-1	validated	p.S457Y	0.669	63	0%	149	26.8%	4	50%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
PRIC285	85441	genome.wustl.edu	37	20	62191879	62191879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037335.2	-1	reviewed	p.E2485K	0.977	134	0%	130	46.2%	9	11.1%	benign(0.064)	tolerated(0.06)	neutral(0.327)	superfamily_P-loop containing nucleoside triphosphate hydrolases
TPTE	7179	genome.wustl.edu	37	21	10914364	10914364	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199261.2	-1	validated	p.S452L	0.029	281	0.4%	363	14.3%	0	-	benign(0.097)	tolerated(0.22)	neutral(0.050)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
TPTE	7179	genome.wustl.edu	37	21	10914405	10914405	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199261.2	-1	validated	p.E438D	0.000	353	0%	449	14.3%	0	-	benign(0.177)	tolerated(0.39)	neutral(0.033)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
TPTE	7179	genome.wustl.edu	37	21	10933894	10933894	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199261.2	-1	validated	p.D329Y	0.986	354	0%	708	15.5%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_(Phosphotyrosine protein) phosphatases II
ANKRD20A11P	391267	genome.wustl.edu	37	21	15339758	15339758	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000429521	-1	known	NULL	0.004	223	0%	109	41.3%	0	-	-	-	-	-
NCAM2	4685	genome.wustl.edu	37	21	22881273	22881273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004540.2	+1	reviewed	p.R727W	0.999	28	0%	151	44.4%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
RWDD2B	10069	genome.wustl.edu	37	21	30378949	30378949	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016940.2	-1	validated	p.R250I	1.000	107	0%	209	38.3%	12	58.3%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_DUF1115
USP16	10600	genome.wustl.edu	37	21	30418995	30418995	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001032410.1	+1	reviewed	p.R455Q	1.000	18	0%	33	42.4%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UCH,superfamily_Cysteine proteinases
GRIK1	2897	genome.wustl.edu	37	21	30949381	30949381	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000830.3	-1	reviewed	p.R678I	1.000	32	0%	100	40%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lig_chan,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II
URB1	9875	genome.wustl.edu	37	21	33723139	33723139	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014825.2	-1	validated	p.A902	0.000	20	0%	28	60.7%	4	0%	-	-	-	NULL
DSCAM	1826	genome.wustl.edu	37	21	41465735	41465735	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001389.3	-1	validated	p.R1255C	0.920	24	0%	73	41.1%	0	-	probably_damaging(0.989)	deleterious(0.02)	deleterious(0.823)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
ZNF295	49854	genome.wustl.edu	37	21	43411492	43411492	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098402.1	-1	validated	p.E905*	0.961	22	0%	41	46.3%	6	66.6%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
CBS	875	genome.wustl.edu	37	21	44488638	44488638	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000071.2	-1	reviewed	p.F99	0.047	27	0%	153	37.9%	1	100%	-	-	-	HMMPfam_PALP,superfamily_Tryptophan synthase beta subunit-like PLP-dependent enzymes
ITGB2	3689	genome.wustl.edu	37	21	46320339	46320339	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000211.3	-1	reviewed	p.D265Y	0.972	21	0%	54	38.9%	9	11.1%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMSmart_VWA,HMMPfam_Integrin_beta,HMMSmart_INB,superfamily_SSF53300
COL6A1	1291	genome.wustl.edu	37	21	47407535	47407535	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001848.2	+1	reviewed	p.G257	0.999	45	0%	35	34.3%	8	12.5%	-	-	-	HMMPfam_Collagen
TUBA8	51807	genome.wustl.edu	37	22	18613802	18613802	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018943.1	+1	provisional	p.E417*	1.000	34	0%	80	38.8%	0	-	-	-	-	superfamily_Tubulin C-terminal domain-like
SERPIND1	3053	genome.wustl.edu	37	22	21134137	21134137	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000185.3	+1	reviewed	p.S179	0.000	46	0%	96	47.9%	0	-	-	-	-	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
IGLV7-43	28776	genome.wustl.edu	37	22	22749532	22749532	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390298	+1	known	p.S19Y	0.828	37	0%	88	34.1%	2	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_Immunoglobulin
IGLV5-37	28783	genome.wustl.edu	37	22	22782300	22782300	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390300	+1	known	p.L100V	0.003	32	0%	89	41.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
LOC100133224	100133224	genome.wustl.edu	37	22	31552529	31552529	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001716151.1	-1	model	p.D180N	1.000	19	0%	94	39.4%	0	-	-	-	-	HMMPfam_LSM,HMMSmart_SM00651,superfamily_Sm-like ribonucleoproteins
PRR14L	253143	genome.wustl.edu	37	22	32108721	32108721	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173566.2	-1	validated	p.D1702Y	0.994	14	0%	42	52.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
XRCC6	2547	genome.wustl.edu	37	22	42046867	42046867	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001469.3	+1	reviewed	p.F367	0.990	38	0%	95	49.5%	153	40.5%	-	-	-	HMMPfam_Ku,HMMSmart_Ku78,superfamily_SPOC-like
BIK	638	genome.wustl.edu	37	22	43524524	43524524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001197.3	+1	reviewed	p.D95N	0.008	29	0%	104	38.5%	60	48.3%	probably_damaging(0.988)	tolerated(0.94)	neutral(0.438)	NULL
PARVB	29780	genome.wustl.edu	37	22	44536022	44536022	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003828.1	+1	validated	p.F270	0.998	68	0%	297	38%	11	0%	-	-	-	superfamily_Calponin-homology
SMC1B	27127	genome.wustl.edu	37	22	45755816	45755816	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148674.3	-1	validated	p.E911*	0.994	54	0%	167	40.1%	0	-	-	-	-	HMMPfam_SMC_N,superfamily_SSF52540
PPARA	5465	genome.wustl.edu	37	22	46614186	46614186	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001928.2	+1	reviewed	p.L132	0.017	18	0%	88	45.5%	4	25%	-	-	-	HMMPfam_zf-C4,HMMSmart_SM00399,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
PKDREJ	10343	genome.wustl.edu	37	22	46653000	46653000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006071.1	-1	reviewed	p.D2074N	0.010	34	0%	77	59.7%	0	-	possibly_damaging(0.739)	tolerated(0.7)	neutral(0.273)	HMMPfam_PKD_channel
ACR	49	genome.wustl.edu	37	22	51183296	51183296	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001097.2	+1	reviewed	p.P309	0.000	18	0%	94	22.3%	0	-	-	-	-	NULL
PPP2R3B	28227	genome.wustl.edu	37	X	306357	306357	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013239.4	-1	reviewed	p.F310L	1.000	25	0%	123	36.6%	16	50%	benign(0.409)	deleterious(0)	deleterious(0.577)	superfamily_EF-hand
GYG2	8908	genome.wustl.edu	37	X	2761306	2761306	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003918.2	+1	reviewed	p.G51	0.978	23	0%	100	44%	7	100%	-	-	-	HMMPfam_Glyco_transf_8,superfamily_Nucleotide-diphospho-sugar transferases
ARSF	416	genome.wustl.edu	37	X	3002467	3002467	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004042.3	+1	reviewed	p.A197V	0.000	57	0%	179	35.2%	0	-	benign(0.009)	tolerated(0.54)	neutral(0.008)	HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like
MXRA5	25878	genome.wustl.edu	37	X	3228396	3228396	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015419.3	-1	reviewed	p.C2616	1.000	6	0.000	24	0.417	16	0%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
WWC3	55841	genome.wustl.edu	37	X	10102571	10102571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015691.3	+1	validated	p.R900W	1.000	34	0%	99	41.4%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PRPS2	5634	genome.wustl.edu	37	X	12828325	12828325	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000489404	+1	known	p.R197L	0.000	25	0%	64	42.2%	0	-	unknown(0)	-	-	NULL
FANCB	2187	genome.wustl.edu	37	X	14861760	14861760	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001018113.1	-1	reviewed	p.E837*	0.127	148	0%	291	44.3%	2	0%	-	-	-	NULL
FANCB	2187	genome.wustl.edu	37	X	14871187	14871187	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001018113.1	-1	reviewed	p.D434Y	0.004	141	0%	243	16%	1	0%	probably_damaging(0.998)	tolerated(0.19)	deleterious(0.524)	NULL
FANCB	2187	genome.wustl.edu	37	X	14882851	14882851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001018113.1	-1	reviewed	p.R261Q	0.000	51	0%	128	34.4%	1	100%	benign(0.013)	tolerated(0.41)	neutral(0.015)	NULL
PDHA1	5160	genome.wustl.edu	37	X	19372657	19372657	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000284.3	+1	reviewed	p.D187Y	1.000	89	0%	369	40.7%	76	0%	benign(0.427)	deleterious(0.02)	deleterious(0.522)	HMMPfam_E1_dh,superfamily_Thiamin diphosphate-binding fold (THDP-binding)
RPS6KA3	6197	genome.wustl.edu	37	X	20179807	20179807	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004586.2	-1	reviewed	p.F638L	1.000	44	0%	180	41.1%	9	0%	benign(0.002)	tolerated(0.13)	neutral(0.253)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
ZNF645	158506	genome.wustl.edu	37	X	22291514	22291514	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152577.2	+1	provisional	p.R136C	0.145	31	0%	40	37.5%	0	-	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	HMMSmart_ZnF_C2H2
PTCHD1	139411	genome.wustl.edu	37	X	23411555	23411555	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173495.2	+1	validated	p.V640	0.494	29	0%	65	41.5%	0	-	-	-	-	HMMPfam_Patched
PTCHD1	139411	genome.wustl.edu	37	X	23411964	23411964	+	Missense_Mutation	SNP	C	C	A	rs193277496	by1000genomes	TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173495.2	+1	validated	p.L777M	1.000	51	0%	216	38.9%	0	-	probably_damaging(0.961)	deleterious(0.04)	deleterious(0.753)	HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain
SAT1	6303	genome.wustl.edu	37	X	23803528	23803528	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002970.2	+1	reviewed	p.V96M	1.000	149	0%	500	43.2%	2586	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Acetyltransf_1,superfamily_Acyl-CoA N-acyltransferases (Nat)
ZFX	7543	genome.wustl.edu	37	X	24228866	24228866	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003410.3	+1	reviewed	p.T597	1.000	55	0%	134	44%	7	0%	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PDK3	5165	genome.wustl.edu	37	X	24557271	24557271	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142386.2	+1	reviewed	p.R413I	1.000	62	0%	132	32.6%	7	0%	benign(0.379)	tolerated(0.08)	neutral(0.421)	NULL
POLA1	5422	genome.wustl.edu	37	X	24732727	24732727	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016937.3	+1	reviewed	p.T129A	0.996	84	0%	188	44.1%	1	0%	benign(0)	tolerated(0.62)	neutral(0.004)	NULL
MAGEB4	4115	genome.wustl.edu	37	X	30261072	30261072	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002367.3	+1	reviewed	p.P274S	0.003	55	0%	157	38.2%	0	-	benign(0.17)	deleterious(0)	neutral(0.460)	HMMPfam_MAGE
DMD	1756	genome.wustl.edu	37	X	32366528	32366528	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004006.2	-1	reviewed	p.D1815N	1.000	181	0%	391	39.6%	2	100%	benign(0.382)	tolerated(0.2)	neutral(0.171)	HMMSmart_SM00150
FAM47B	170062	genome.wustl.edu	37	X	34962551	34962551	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152631.2	+1	validated	p.A535T	0.000	49	0%	124	40.3%	0	-	benign(0.01)	deleterious(0.04)	neutral(0.349)	NULL
CXorf30	645090	genome.wustl.edu	37	X	36379505	36379505	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098843.3	+1	validated	p.S417Y	0.000	59	0%	132	46.2%	3	0%	benign(0.026)	tolerated(0.07)	neutral(0.320)	NULL
SRPX	8406	genome.wustl.edu	37	X	38019353	38019353	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006307.4	-1	validated	p.I291T	0.833	18	0%	64	40.6%	3	33.3%	benign(0)	tolerated(0.55)	neutral(0.007)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
BCOR	54880	genome.wustl.edu	37	X	39933752	39933752	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001123385.1	-1	reviewed	p.A283T	0.643	61	0%	22	31.8%	8	0%	benign(0)	tolerated(0.1)	neutral(0.286)	NULL
BCOR	54880	genome.wustl.edu	37	X	39935769	39935769	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001123385.1	-1	reviewed	p.D35Y	1.000	77	0%	224	39.7%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
EFHC2	80258	genome.wustl.edu	37	X	44120319	44120319	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000333807	-1	known	e4+2	1.000	26	0%	73	28.8%	0	-	-	-	-	-
FUNDC1	139341	genome.wustl.edu	37	X	44386560	44386560	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173794.3	-1	validated	p.D105Y	1.000	203	0%	520	39.8%	36	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_FUN14
DUSP21	63904	genome.wustl.edu	37	X	44703762	44703762	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022076.3	+1	reviewed	p.S128	0.561	32	0%	67	41.8%	0	-	-	-	-	HMMPfam_DSPc,HMMSmart_DSPc,superfamily_SSF52799
ZNF674	641339	genome.wustl.edu	37	X	46359810	46359810	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039891.2	-1	validated	p.R405I	1.000	97	0%	229	34.9%	0	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF674	641339	genome.wustl.edu	37	X	46360498	46360498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039891.2	-1	validated	p.A176T	0.006	99	0%	250	41.6%	0	-	benign(0.031)	tolerated(0.65)	neutral(0.005)	NULL
ZNF157	7712	genome.wustl.edu	37	X	47272605	47272605	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003446.3	+1	reviewed	p.R378I	0.999	73	0%	118	36.4%	0	-	benign(0.349)	tolerated(0.06)	neutral(0.433)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
SSX6	280657	genome.wustl.edu	37	X	47969909	47969909	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000304314	+1	known	p.E79*	0.001	272	0.4%	692	38.6%	0	-	-	-	-	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
FTSJ1	24140	genome.wustl.edu	37	X	48337491	48337491	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012280.2	+1	reviewed	p.D116	0.982	38	0%	111	29.7%	53	0%	-	-	-	HMMPfam_FtsJ,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
WDR45	11152	genome.wustl.edu	37	X	48932468	48932468	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007075.3	-1	reviewed	p.D360E	1.000	36	0%	92	38%	82	0%	benign(0)	tolerated(0.31)	neutral(0.027)	NULL
CACNA1F	778	genome.wustl.edu	37	X	49071559	49071559	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005183.2	-1	reviewed	p.A1206V	0.989	49	0%	94	34%	0	-	benign(0.025)	tolerated(0.71)	neutral(0.003)	superfamily_Voltage-gated potassium channels
CLCN5	1184	genome.wustl.edu	37	X	49855335	49855335	+	Nonsense_Mutation	SNP	C	C	T	rs151340621		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127898.1	+1	reviewed	p.R718*	1.000	64	0%	155	38.1%	0	-	-	-	-	HMMPfam_CBS
AKAP4	8852	genome.wustl.edu	37	X	49958394	49958394	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003886.2	-1	reviewed	p.E324*	1.000	27	0%	33	51.5%	0	-	-	-	-	HMMPfam_AKAP_110,HMMSmart_SM00807
CCNB3	85417	genome.wustl.edu	37	X	50052167	50052167	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033031.2	+1	reviewed	p.L333*	0.000	35	0%	59	37.3%	0	-	-	-	-	NULL
SSX7	280658	genome.wustl.edu	37	X	52674498	52674498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173358.2	-1	reviewed	p.E188K	0.227	75	0%	446	24.9%	0	-	probably_damaging(0.999)	tolerated(0.16)	deleterious(0.550)	HMMPfam_SSXRD
WNK3	65267	genome.wustl.edu	37	X	54277993	54277993	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020922.4	-1	reviewed	p.S832Y	0.000	79	0%	225	41.3%	1	100%	possibly_damaging(0.808)	deleterious(0)	deleterious(0.748)	superfamily_Kinase_like
MAGED2	10916	genome.wustl.edu	37	X	54839572	54839572	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014599.4	+1	reviewed	p.R396H	1.000	78	0%	302	44%	223	0%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMPfam_MAGE
TRO	7216	genome.wustl.edu	37	X	54949723	54949723	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039705.1	+1	reviewed	p.R253Q	0.044	77	0%	73	53.4%	0	-	benign(0.07)	tolerated(0.16)	neutral(0.065)	NULL
PFKFB1	5207	genome.wustl.edu	37	X	54978531	54978531	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002625.2	-1	reviewed	p.I218T	1.000	38	0%	102	44.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_6PF2K,superfamily_SSF52540
FOXR2	139628	genome.wustl.edu	37	X	55650634	55650634	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198451.3	+1	validated	p.D164N	0.000	23	0%	65	38.5%	0	-	possibly_damaging(0.819)	tolerated(0.45)	neutral(0.322)	NULL
FAM123B	139285	genome.wustl.edu	37	X	63412637	63412637	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152424.3	-1	reviewed	p.R177H	1.000	20	0%	68	44.1%	1	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_WTX
ZC3H12B	340554	genome.wustl.edu	37	X	64719098	64719098	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010888.3	+1	reviewed	p.S312Y	1.000	28	0%	58	36.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LAS1L	81887	genome.wustl.edu	37	X	64749688	64749688	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031206.4	-1	validated	p.E195D	0.013	211	0%	381	17.3%	14	42.8%	benign(0.001)	deleterious(0.04)	neutral(0.349)	NULL
AR	367	genome.wustl.edu	37	X	66765746	66765746	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000044.2	+1	reviewed	p.A253V	0.976	21	0%	79	34.2%	2	0%	benign(0.007)	deleterious(0.03)	neutral(0.364)	HMMPfam_Androgen_recep
IL2RG	3561	genome.wustl.edu	37	X	70330938	70330938	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000487883	-1	known	p.F14L	0.000	43	0%	81	43.2%	0	-	unknown(0)	-	-	NULL
OGT	8473	genome.wustl.edu	37	X	70783231	70783231	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181672.2	+1	reviewed	p.N773I	1.000	63	0%	172	39.5%	31	0%	benign(0.084)	tolerated(0.48)	neutral(0.017)	NULL
RGAG4	340526	genome.wustl.edu	37	X	71349920	71349920	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024455.3	-1	validated	p.E491K	0.789	71	0%	136	45.6%	1	0%	probably_damaging(0.984)	deleterious(0.03)	deleterious(0.795)	NULL
ERCC6L	54821	genome.wustl.edu	37	X	71425360	71425360	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017669.2	-1	validated	p.S1086Y	0.165	61	0%	156	39.7%	2	0%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
KIAA2022	340533	genome.wustl.edu	37	X	73959311	73959311	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008537.2	-1	validated	p.K1494Q	1.000	84	0%	166	50%	1	0%	benign(0.188)	deleterious(0.03)	neutral(0.382)	NULL
ABCB7	22	genome.wustl.edu	37	X	74280063	74280063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004299.3	-1	reviewed	p.D681N	0.887	59	0%	158	42.4%	26	0%	benign(0)	tolerated(0.23)	neutral(0.042)	HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_SSF52540
MAGT1	84061	genome.wustl.edu	37	X	77112296	77112296	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032121.5	-1	reviewed	p.L234	1.000	72	0%	140	40%	12	0%	-	-	-	HMMPfam_OST3_OST6
ATP7A	538	genome.wustl.edu	37	X	77243985	77243985	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000052.4	+1	reviewed	p.R123I	0.042	41	0%	133	43.6%	0	-	benign(0.322)	tolerated(0.18)	neutral(0.157)	superfamily_HMA heavy metal-associated domain
ATP7A	538	genome.wustl.edu	37	X	77268586	77268586	+	Nonsense_Mutation	SNP	C	C	T	rs72554645		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000052.4	+1	reviewed	p.R795*	1.000	72	0%	277	43.7%	0	-	-	-	-	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transmembrane domain M
LPAR4	2846	genome.wustl.edu	37	X	78011105	78011105	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005296.2	+1	reviewed	p.V247L	1.000	64	0%	136	42.6%	0	-	possibly_damaging(0.799)	tolerated(0.32)	neutral(0.325)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
HDX	139324	genome.wustl.edu	37	X	83588779	83588779	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144657.4	-1	validated	p.F604L	0.994	276	0%	168	42.9%	0	-	benign(0)	tolerated(1)	-	NULL
HDX	139324	genome.wustl.edu	37	X	83723730	83723730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144657.4	-1	validated	p.R334Q	0.720	56	0%	183	40.4%	0	-	benign(0.307)	tolerated(0.22)	neutral(0.138)	NULL
KLHL4	56062	genome.wustl.edu	37	X	86924379	86924379	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_057162.2	+1	reviewed	p.E716D	0.000	51	0%	116	44%	0	-	benign(0.125)	-	-	NULL
CENPI	2491	genome.wustl.edu	37	X	100400134	100400134	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006733.2	+1	reviewed	p.R549	0.975	83	0%	323	41.8%	1	0%	-	-	-	NULL
BTK	695	genome.wustl.edu	37	X	100615741	100615741	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000061.2	-1	reviewed	p.I197	0.996	43	0%	143	41.3%	0	-	-	-	-	superfamily_SH3
GLA	2717	genome.wustl.edu	37	X	100653405	100653405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000169.2	-1	reviewed	p.A318T	1.000	35	0%	134	43.3%	134	0%	probably_damaging(0.966)	deleterious(0.03)	deleterious(0.772)	superfamily_(Trans)glycosidases
ARMCX3	51566	genome.wustl.edu	37	X	100880984	100880984	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016607.3	+1	reviewed	p.E339*	1.000	26	0%	42	26.2%	17	0%	-	-	-	HMMPfam_DUF634,superfamily_ARM-type_fold
ARMCX5	64860	genome.wustl.edu	37	X	101857176	101857176	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022838.3	+1	validated	p.A36V	0.001	22	0%	59	37.3%	7	0%	benign(0)	tolerated(0.17)	neutral(0.059)	NULL
GLRA4	441509	genome.wustl.edu	37	X	102983092	102983092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024452.2	-1	validated	p.L14F	1.000	27	0%	135	51.1%	0	-	probably_damaging(0.981)	-	-	NULL
NRK	203447	genome.wustl.edu	37	X	105152945	105152945	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198465.2	+1	validated	p.R438*	0.001	30	0%	35	37.1%	0	-	-	-	-	NULL
CLDN2	9075	genome.wustl.edu	37	X	106171559	106171559	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020384.3	+1	reviewed	p.S34F	1.000	36	0%	52	42.3%	0	-	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	HMMPfam_PMP22_Claudin
RBM41	55285	genome.wustl.edu	37	X	106359125	106359125	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000434854	-1	known	p.L93I	0.960	78	0%	260	44.2%	2	0%	-	-	-	NULL
CXorf41	139212	genome.wustl.edu	37	X	106482152	106482152	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173494.1	+1	validated	p.A144T	1.000	125	0%	203	39.9%	20	100%	benign(0.059)	deleterious(0.01)	neutral(0.410)	NULL
COL4A6	1288	genome.wustl.edu	37	X	107408660	107408660	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001847.2	-1	reviewed	p.P1251S	1.000	24	0%	30	53.3%	0	-	possibly_damaging(0.706)	tolerated(0.11)	deleterious(0.526)	HMMPfam_Collagen
ALG13	79868	genome.wustl.edu	37	X	110951353	110951353	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000394780	+1	known	p.D161G	0.372	34	0%	167	36.5%	2	0%	benign(0.002)	-	-	NULL
LUZP4	51213	genome.wustl.edu	37	X	114541267	114541267	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016383.3	+1	validated	p.L280	0.001	19	0%	76	43.4%	0	-	-	-	-	NULL
AGTR2	186	genome.wustl.edu	37	X	115304077	115304077	+	Nonsense_Mutation	SNP	C	C	T	rs186326479	by1000genomes	TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000686.4	+1	reviewed	p.R182*	0.998	84	0%	165	38.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
KLHL13	90293	genome.wustl.edu	37	X	117043345	117043345	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033495.3	-1	reviewed	p.E429*	1.000	40	0%	81	38.3%	18	0%	-	-	-	HMMSmart_SM00612,superfamily_Galactose oxidase central domain
DOCK11	139818	genome.wustl.edu	37	X	117815024	117815024	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144658.3	+1	validated	p.S1892*	1.000	62	0%	88	34.1%	2	0%	-	-	-	HMMPfam_Ded_cyto
ZCCHC12	170261	genome.wustl.edu	37	X	117960401	117960401	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173798.2	+1	provisional	p.F398L	0.001	8	0.000	48	0.271	0	-	benign(0)	tolerated(1)	-	NULL
SLC25A43	203427	genome.wustl.edu	37	X	118587004	118587004	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145305.2	+1	reviewed	p.P334	0.002	76	0%	144	31.9%	1	0%	-	-	-	NULL
SLC25A5	292	genome.wustl.edu	37	X	118603829	118603829	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001152.4	+1	reviewed	p.R106I	0.999	36	0%	151	28.5%	248	0%	benign(0.011)	tolerated(0.08)	neutral(0.300)	superfamily_Mitochondrial carrier
SEPT6	23157	genome.wustl.edu	37	X	118786883	118786883	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015129.5	-1	reviewed	p.F154L	1.000	41	0%	174	45.4%	12	75%	benign(0.111)	deleterious(0.04)	neutral(0.357)	HMMPfam_Septin,superfamily_P-loop containing nucleoside triphosphate hydrolases
RPL39	6170	genome.wustl.edu	37	X	118923917	118923917	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001000.2	-1	reviewed	p.R21C	1.000	89	0%	216	44%	1952	0%	benign(0.042)	tolerated(0.05)	neutral(0.348)	HMMPfam_Ribosomal_L39,superfamily_Ribosomal protein L39e
UPF3B	65109	genome.wustl.edu	37	X	118986859	118986859	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080632.1	-1	reviewed	p.E11D	1.000	35	0%	131	46.6%	2	100%	unknown(0)	tolerated(0.18)	-	NULL
STAG2	10735	genome.wustl.edu	37	X	123215302	123215302	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042749.1	+1	validated	p.E950*	1.000	101	0%	258	39.5%	0	-	-	-	-	superfamily_ARM-type_fold
SH2D1A	4068	genome.wustl.edu	37	X	123504038	123504038	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002351.4	+1	reviewed	p.V72I	1.000	48	0%	93	36.6%	0	-	possibly_damaging(0.628)	tolerated(0.07)	deleterious(0.538)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
SMARCA1	6594	genome.wustl.edu	37	X	128582407	128582407	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003069.3	-1	reviewed	p.R1015H	1.000	214	0%	519	32.8%	26	80.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_SLIDE
SMARCA1	6594	genome.wustl.edu	37	X	128602794	128602794	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003069.3	-1	reviewed	p.R885Q	1.000	158	0%	285	41.4%	39	94.8%	benign(0.043)	tolerated(0.41)	neutral(0.017)	HMMSmart_SM00717,superfamily_Homeodomain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases
UTP14A	10813	genome.wustl.edu	37	X	129055510	129055510	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006649.3	+1	reviewed	p.K432I	0.002	43	0%	89	40.4%	6	0%	probably_damaging(0.975)	deleterious(0.02)	deleterious(0.800)	HMMPfam_Utp14
AIFM1	9131	genome.wustl.edu	37	X	129289204	129289204	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145812.2	-1	reviewed	p.S55F	1.000	55	0%	134	41.8%	0	-	possibly_damaging(0.843)	deleterious(0.04)	deleterious(0.672)	NULL
FRMD7	90167	genome.wustl.edu	37	X	131212720	131212720	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194277.2	-1	reviewed	p.S442Y	1.000	60	0%	140	37.9%	0	-	benign(0.005)	deleterious(0)	neutral(0.445)	NULL
USP26	83844	genome.wustl.edu	37	X	132161331	132161331	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031907.1	-1	reviewed	p.M306I	1.000	37	0%	16	50%	0	-	possibly_damaging(0.858)	tolerated(0.16)	neutral(0.391)	HMMPfam_UCH,PatternScan_UCH_2_1,superfamily_Cysteine proteinases
USP26	83844	genome.wustl.edu	37	X	132161981	132161981	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031907.1	-1	reviewed	p.D90Y	0.482	120	0%	144	39.6%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
LOC644717	644717	genome.wustl.edu	37	X	134808474	134808474	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343850.1	-1	model	p.S474Y	0.044	19	0%	86	34.9%	0	-	-	-	-	NULL
SLC9A6	10479	genome.wustl.edu	37	X	135095129	135095129	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042537.1	+1	reviewed	p.R355W	1.000	43	2.3%	146	45.9%	2	50%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_Na_H_Exchanger
MAP7D3	79649	genome.wustl.edu	37	X	135312624	135312624	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024597.3	-1	reviewed	p.T557I	0.000	87	0%	254	40.2%	0	-	benign(0.232)	tolerated(0.5)	neutral(0.033)	NULL
MAP7D3	79649	genome.wustl.edu	37	X	135313719	135313719	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024597.3	-1	reviewed	p.A466V	0.002	28	0%	148	43.9%	1	0%	benign(0.001)	tolerated(0.56)	neutral(0.006)	NULL
GPR112	139378	genome.wustl.edu	37	X	135405449	135405449	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153834.3	+1	reviewed	p.E195K	0.214	55	0%	102	36.3%	0	-	probably_damaging(0.967)	deleterious(0)	deleterious(0.853)	superfamily_ConA_like_lec_gl
GPR112	139378	genome.wustl.edu	37	X	135427538	135427538	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153834.3	+1	reviewed	p.S558Y	0.061	36	0%	46	43.5%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
GPR112	139378	genome.wustl.edu	37	X	135429713	135429713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153834.3	+1	reviewed	p.S1283Y	0.000	38	0%	53	47.2%	0	-	possibly_damaging(0.911)	deleterious(0.03)	deleterious(0.728)	NULL
HTATSF1	27336	genome.wustl.edu	37	X	135592250	135592250	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014500.4	+1	reviewed	p.D312Y	1.000	23	0%	90	31.1%	27	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
ARHGEF6	9459	genome.wustl.edu	37	X	135750226	135750226	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004840.2	-1	reviewed	p.R765*	0.824	67	0%	341	33.4%	1	0%	-	-	-	NULL
ARHGEF6	9459	genome.wustl.edu	37	X	135754267	135754267	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004840.2	-1	reviewed	p.D683Y	1.000	54	0%	306	40.8%	1	100%	possibly_damaging(0.947)	tolerated(0.26)	neutral(0.424)	NULL
ARHGEF6	9459	genome.wustl.edu	37	X	135772825	135772825	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004840.2	-1	reviewed	p.F377L	1.000	58	0%	247	36.4%	1	0%	possibly_damaging(0.818)	tolerated(0.11)	deleterious(0.581)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
MCF2	4168	genome.wustl.edu	37	X	138711973	138711973	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099855.1	-1	reviewed	p.E167*	1.000	47	0%	113	20.4%	0	-	-	-	-	NULL
ATP11C	286410	genome.wustl.edu	37	X	138857081	138857081	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173694.4	-1	validated	p.A665T	1.000	64	0%	178	47.8%	2	0%	probably_damaging(0.988)	tolerated(0.16)	deleterious(0.497)	superfamily_HAD-like
ATP11C	286410	genome.wustl.edu	37	X	138867459	138867459	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173694.4	-1	validated	e16-1	1.000	115	0%	220	30%	0	-	-	-	-	-
ATP11C	286410	genome.wustl.edu	37	X	138871548	138871548	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173694.4	-1	validated	p.Q439K	0.001	123	0%	317	43.8%	3	0%	benign(0)	tolerated(0.94)	-	superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N
ENSG00000207041	0	genome.wustl.edu	37	X	140212242	140212242	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000384314	-1	known	NULL	0.000	91	0%	134	20.1%	1	0%	-	-	-	-
LOC392555	392555	genome.wustl.edu	37	X	141260896	141260896	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343852.1	-1	model	p.S344Y	0.006	32	0%	109	35.8%	0	-	-	-	-	HMMPfam_MAGE
MIR890	100126303	genome.wustl.edu	37	X	145075796	145075796	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000401256	-1	known	NULL	0.000	23	0%	48	47.9%	0	-	-	-	-	-
AFF2	2334	genome.wustl.edu	37	X	147743942	147743942	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002025.3	+1	reviewed	p.E232*	1.000	48	0%	86	39.5%	0	-	-	-	-	HMMPfam_AF-4
TMEM185A	84548	genome.wustl.edu	37	X	148690422	148690422	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032508.2	-1	reviewed	p.I103	0.841	48	0%	82	29.3%	11	90.9%	-	-	-	HMMPfam_Tmemb_185A
MTM1	4534	genome.wustl.edu	37	X	149814235	149814235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000252.2	+1	reviewed	p.R253Q	0.999	44	0%	135	41.5%	2	100%	possibly_damaging(0.905)	deleterious(0.04)	deleterious(0.708)	HMMPfam_Myotub-related,superfamily_SSF52799
MTM1	4534	genome.wustl.edu	37	X	149818305	149818305	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000252.2	+1	reviewed	p.V328	1.000	46	0%	140	38.6%	1	0%	-	-	-	superfamily_SSF52799
CNGA2	1260	genome.wustl.edu	37	X	150912622	150912622	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005140.1	+1	reviewed	p.F549L	1.000	47	0%	128	37.5%	0	-	probably_damaging(0.996)	deleterious(0.05)	deleterious(0.807)	HMMPfam_cNMP_binding,HMMSmart_cNMP,superfamily_cNMP_binding
GABRA3	2556	genome.wustl.edu	37	X	151393280	151393280	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000808.3	-1	reviewed	p.D197Y	1.000	67	0%	134	32.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL
CETN2	1069	genome.wustl.edu	37	X	151997761	151997761	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004344.1	-1	reviewed	p.E75*	0.978	66	0%	224	39.3%	197	0%	-	-	-	HMMSmart_EFh,HMMPfam_efhand,superfamily_SSF47473
ZNF275	10838	genome.wustl.edu	37	X	152613160	152613160	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080485.2	+1	validated	p.H339	0.991	6	0.000	9	0.556	3	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
OPN1MW2	728458	genome.wustl.edu	37	X	153496061	153496061	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000430419	+1	known	p.E126K	1.000	61	0%	298	33.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GAB3	139716	genome.wustl.edu	37	X	153940545	153940545	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081573.1	-1	reviewed	p.R343I	1.000	35	0%	140	30.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DKC1	1736	genome.wustl.edu	37	X	154004541	154004541	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001363.3	+1	reviewed	p.S473I	0.993	39	0%	81	33.3%	34	0%	possibly_damaging(0.604)	deleterious(0.03)	deleterious(0.574)	NULL
F8	2157	genome.wustl.edu	37	X	154194756	154194756	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TC-01A-11D-A10B-09	TCGA-BS-A0TC-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000132.3	-1	reviewed	p.A406S	1.000	32	0%	121	43%	0	-	benign(0.213)	tolerated(0.16)	neutral(0.081)	superfamily_Cupredoxins
