Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
PEX19	5824	genome.wustl.edu	37	1	160249891	160249891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002857.3	-1	reviewed	p.R247H	1.000	205	0%	210	46.2%	64	45.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pex19
SLC9A11	284525	genome.wustl.edu	37	1	173476163	173476165	+	In_Frame_Del	DEL	GTT	GTT	-	novel		TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	GTT	GTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178527.3	-1	validated	p.N1019in_frame_del	0.972:0.975:0.995	-	-	-	-	-	-	-	-	-	NULL
SLC9A11	284525	genome.wustl.edu	37	1	173476167	173476168	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178527.3	-1	validated	p.Q1018fs	0.999:0.998	-	-	-	-	-	-	-	-	-	NULL
SLC9A11	284525	genome.wustl.edu	37	1	173476170	173476179	+	Frame_Shift_Del	DEL	AACCTTAAGT	AACCTTAAGT	-	novel		TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	AACCTTAAGT	AACCTTAAGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178527.3	-1	validated	p.D1014fs	0.979:0.948:0.000:0.000:0.008:0.047:0.240:0.242:0.604:0.954	-	-	-	-	-	-	-	-	-	NULL
EGLN1	54583	genome.wustl.edu	37	1	231557050	231557050	+	Silent	SNP	G	G	C	novel		TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022051.2	-1	reviewed	p.L195	1.000	12	0%	15	46.7%	39	48.7%	-	-	-	NULL
NYAP2	57624	genome.wustl.edu	37	2	226446763	226446763	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020864.1	+1	validated	p.T210	0.013	71	0%	66	50%	1	0%	-	-	-	NULL
PIK3CA	5290	genome.wustl.edu	37	3	178936095	178936095	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.Q546R	1.000	240	0%	2043	93.7%	116	96.5%	probably_damaging(0.998)	deleterious(0.05)	deleterious(0.820)	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold
C4orf29	80167	genome.wustl.edu	37	4	128905565	128905565	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039717.1	+1	predicted	p.V55A	0.996	338	0%	269	44.2%	7	42.8%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	HMMPfam_DUF2048
LIFR	3977	genome.wustl.edu	37	5	38490321	38490321	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127671.1	-1	reviewed	p.R713H	0.520	413	0%	336	32.1%	1	0%	probably_damaging(0.994)	deleterious(0.05)	deleterious(0.797)	superfamily_Fibronectin type III
PAPD4	167153	genome.wustl.edu	37	5	78936988	78936988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114393.1	+1	validated	p.G214D	1.000	557	0%	339	33%	20	30%	possibly_damaging(0.811)	deleterious(0.03)	deleterious(0.670)	superfamily_Nucleotidyltransferase
NRG2	9542	genome.wustl.edu	37	5	139422000	139422000	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013982.2	-1	reviewed	p.K219Q	1.000	35	0%	27	37%	0	-	probably_damaging(0.982)	deleterious(0.03)	deleterious(0.791)	NULL
PCDHA8	56140	genome.wustl.edu	37	5	140221077	140221077	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018911.2	+1	reviewed	p.A57	0.000	47	0%	40	20%	1	0%	-	-	-	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
DUSP22	56940	genome.wustl.edu	37	6	335112	335112	+	Splice_Site	SNP	A	A	T	novel		TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020185.3	+1	provisional	e4-2	1.000	325	0%	289	17.3%	0	-	-	-	-	-
HSP90AB1	3326	genome.wustl.edu	37	6	44217197	44217197	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007355.2	+1	provisional	p.P77	0.997	223	0%	194	21.1%	1550	21.8%	-	-	-	HMMPfam_HATPase_c,HMMSmart_SM00387,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
ZC3H12D	340152	genome.wustl.edu	37	6	149777866	149777866	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207360.2	-1	validated	p.E206K	1.000	38	0%	39	35.9%	1	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
MLLT4	4301	genome.wustl.edu	37	6	168352414	168352414	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040001.1	+1	validated	p.P1452	0.000	84	0%	65	47.7%	70	45.7%	-	-	-	NULL
ABCA13	154664	genome.wustl.edu	37	7	48567847	48567847	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152701.3	+1	reviewed	p.G4754R	0.916	596	0%	386	42.5%	0	-	probably_damaging(0.999)	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ARPC1B	10095	genome.wustl.edu	37	7	98985750	98985750	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005720.2	+1	reviewed	p.W86C	1.000	44	0%	45	80%	195	71.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like
MET	4233	genome.wustl.edu	37	7	116339642	116339642	+	Missense_Mutation	SNP	G	G	T	rs55985569	byCluster;byFrequency;by1000genomes	TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127500.1	+1	reviewed	p.E168D	0.940	126	48.4%	63	87.3%	27	100%	benign(0.005)	tolerated(0.08)	neutral(0.300)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
WDFY4	57705	genome.wustl.edu	37	10	50025347	50025347	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020945.1	+1	validated	p.Q1800K	1.000	25	0%	54	25.9%	0	-	possibly_damaging(0.903)	deleterious(0)	deleterious(0.802)	NULL
CCDC6	8030	genome.wustl.edu	37	10	61612347	61612349	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	TTC	TTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005436.3	-1	validated	p.E139in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_DUF2046
RTN4RL2	349667	genome.wustl.edu	37	11	57244296	57244296	+	Missense_Mutation	SNP	C	C	T	rs141304388	by1000genomes	TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178570.1	+1	provisional	p.A392V	0.135	1	0.000	6	1.000	2	50%	possibly_damaging(0.631)	deleterious(0.01)	deleterious(0.626)	NULL
SPTBN2	6712	genome.wustl.edu	37	11	66468011	66468011	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006946.2	-1	reviewed	p.V1187M	0.988	19	0%	29	20.7%	23	17.3%	benign(0.023)	tolerated(0.27)	neutral(0.035)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
NOP2	4839	genome.wustl.edu	37	12	6669954	6669954	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033714.1	-1	validated	e12-1	1.000	123	0%	129	24%	0	-	-	-	-	-
CREBL2	1389	genome.wustl.edu	37	12	12788836	12788836	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001310.2	+1	reviewed	p.R47S	0.919	113	0%	74	32.4%	12	25%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_bZIP_2
ASUN	55726	genome.wustl.edu	37	12	27081820	27081820	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018164.2	-1	validated	p.A107T	1.000	78	0%	73	32.9%	10	10%	benign(0.013)	tolerated(0.5)	neutral(0.011)	HMMPfam_DUF2151
C12orf35	55196	genome.wustl.edu	37	12	32135984	32135984	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018169.3	+1	validated	p.N699D	0.000	163	0%	106	54.7%	84	55.9%	probably_damaging(0.992)	tolerated(0.1)	deleterious(0.734)	NULL
ARID2	196528	genome.wustl.edu	37	12	46243917	46243917	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152641.2	+1	validated	p.V671I	1.000	277	0%	179	13.4%	13	15.3%	benign(0)	tolerated(0.47)	neutral(0.011)	NULL
LOC121456	121456	genome.wustl.edu	37	12	98848854	98848854	+	RNA	SNP	G	G	A	novel		TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_016411.2	-1	model	NULL	0.997	114	0%	70	21.4%	1	100%	-	-	-	-
RPH3A	22895	genome.wustl.edu	37	12	113321135	113321135	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143854.1	+1	validated	p.R455Q	0.997	125	0%	112	51.8%	0	-	probably_damaging(0.995)	deleterious(0.04)	deleterious(0.806)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
SETD1B	23067	genome.wustl.edu	37	12	122268031	122268032	+	Frame_Shift_Ins	INS	-	-	A	rs188677827	by1000genomes	TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015048.1	+1	validated	p.Q1887fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_SET,HMMSmart_SET,superfamily_SSF82199
BIVM	54841	genome.wustl.edu	37	13	103474424	103474428	+	Frame_Shift_Del	DEL	ACAAA	ACAAA	-	novel		TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	ACAAA	ACAAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017693.3	+1	validated	p.R272fs	1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
BIVM	54841	genome.wustl.edu	37	13	103474430	103474431	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	TA	TA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017693.3	+1	validated	p.N275fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
MGA	23269	genome.wustl.edu	37	15	42052602	42052602	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080541.2	+1	validated	p.R2474C	1.000	268	0%	244	45.9%	13	46.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HLH,superfamily_HLH helix-loop-helix DNA-binding domain
RASL12	51285	genome.wustl.edu	37	15	65350833	65350833	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016563.2	-1	validated	p.H119	0.008	25	0%	49	24.5%	4	0%	-	-	-	HMMPfam_Ras,superfamily_SSF52540
PRC1	9055	genome.wustl.edu	37	15	91517381	91517381	+	Silent	SNP	C	C	G	rs77938393	byFrequency;by1000genomes	TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003981.2	-1	reviewed	p.P482	0.011	326	0%	355	19.2%	80	20%	-	-	-	HMMPfam_MAP65_ASE1
RHBDF1	64285	genome.wustl.edu	37	16	114700	114700	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022450.3	-1	validated	p.R82H	1.000	147	0.7%	219	70.8%	52	80.7%	possibly_damaging(0.946)	deleterious(0)	deleterious(0.835)	NULL
TMEM8A	58986	genome.wustl.edu	37	16	424867	424867	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021259.2	-1	validated	p.V489M	0.215	47	0%	76	15.8%	353	15.2%	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	NULL
LOC100289262	100289262	genome.wustl.edu	37	16	67289795	67289795	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344111.1	-1	model	p.V81I	1.000	40	0%	74	18.9%	0	-	-	-	-	NULL
TP53	7157	genome.wustl.edu	37	17	7577097	7577097	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000546.4	-1	reviewed	p.D281Y	1.000	205	0%	195	86.7%	204	98%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_p53-like transcription factors,HMMPfam_P53
PLCD3	113026	genome.wustl.edu	37	17	43190339	43190339	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000322765	-1	known	p.R724W	1.000	74	0%	112	69.6%	20	65%	benign(0.019)	tolerated(0.17)	neutral(0.060)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
NFE2L1	4779	genome.wustl.edu	37	17	46128553	46128553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003204.2	+1	validated	p.R25W	1.000	111	0%	126	31%	117	25.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TRIM25	7706	genome.wustl.edu	37	17	54991092	54991092	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005082.4	-1	reviewed	p.P86	0.000	2	0.000	18	1.000	9	100%	-	-	-	NULL
PIK3R2	5296	genome.wustl.edu	37	19	18277996	18277996	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005027.2	+1	validated	p.R539H	1.000	45	0%	61	29.5%	56	23.2%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
PPP2R1A	5518	genome.wustl.edu	37	19	52716214	52716214	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014225.5	+1	reviewed	p.V220M	1.000	48	0%	73	28.8%	589	39%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HEAT,superfamily_ARM repeat
RAE1	8480	genome.wustl.edu	37	20	55929873	55929873	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A15V-01A-11D-A122-09	TCGA-D1-A15V-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001015885.1	+1	reviewed	e2+1	1.000	311	0%	291	24.1%	0	-	-	-	-	-
