Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
KLHL17	339451	genome.wustl.edu	37	1	897741	897741	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198317.1	+1	provisional	p.E240K	1.000	71	0%	71	31%	8	12.5%	benign(0.026)	tolerated(0.6)	neutral(0.005)	HMMPfam_BACK
AGRN	375790	genome.wustl.edu	37	1	984947	984947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198576.2	+1	validated	p.A1506T	1.000	53	0%	42	19%	246	50.8%	benign(0.001)	tolerated(0.17)	neutral(0.059)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_1
ACAP3	116983	genome.wustl.edu	37	1	1237374	1237374	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030649.2	-1	validated	p.V111A	0.972	56	0%	78	33.3%	7	42.8%	possibly_damaging(0.529)	deleterious(0.03)	deleterious(0.543)	NULL
ATAD3A	55210	genome.wustl.edu	37	1	1469362	1469362	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000339113	+1	known	p.R543C	0.080	79	0%	80	26.3%	108	50.9%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
CDK11A	728642	genome.wustl.edu	37	1	1638927	1638927	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024011.2	-1	reviewed	p.G389D	1.000	231	0%	299	33.1%	44	56.8%	unknown(0)	tolerated(0.36)	-	NULL
NADK	65220	genome.wustl.edu	37	1	1686839	1686839	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023018.3	-1	validated	p.Q221R	1.000	125	0%	206	35%	83	56.6%	benign(0.054)	tolerated(0.39)	neutral(0.019)	HMMPfam_NAD_kinase,superfamily_NAD kinase (Pfam 01513)
C1orf86	199990	genome.wustl.edu	37	1	2125559	2125559	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182533.2	-1	validated	p.R26C	0.000	24	0%	23	34.8%	24	45.8%	unknown(0)	deleterious(0.04)	-	NULL
ACTRT2	140625	genome.wustl.edu	37	1	2938955	2938955	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080431.4	+1	reviewed	p.P235	0.694	27	0%	15	46.7%	0	-	-	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
PRDM16	63976	genome.wustl.edu	37	1	3328186	3328186	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022114.3	+1	reviewed	p.S475	0.843	59	0%	49	24.5%	0	-	-	-	-	NULL
WRAP73	49856	genome.wustl.edu	37	1	3551827	3551827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017818.3	-1	reviewed	p.R212Q	1.000	127	0%	146	27.4%	30	30%	probably_damaging(0.997)	tolerated(0.2)	deleterious(0.515)	HMMSmart_SM00320,superfamily_C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
TNFRSF25	8718	genome.wustl.edu	37	1	6521690	6521690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148965.1	-1	reviewed	p.T362M	0.997	12	0%	18	44.4%	35	42.8%	probably_damaging(0.967)	tolerated(0.25)	neutral(0.446)	HMMPfam_Death,HMMSmart_DEATH,superfamily_DEATH_like
ENO1	2023	genome.wustl.edu	37	1	8924010	8924010	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001428.2	-1	reviewed	p.S336F	1.000	257	0%	337	30.3%	3892	48%	probably_damaging(0.977)	deleterious(0)	deleterious(0.863)	HMMPfam_Enolase_C,superfamily_Enolase C-terminal domain-like
CASZ1	54897	genome.wustl.edu	37	1	10710794	10710794	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079843.1	-1	validated	p.H945	1.000	249	0%	344	32.6%	10	40%	-	-	-	NULL
CASZ1	54897	genome.wustl.edu	37	1	10725391	10725391	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079843.1	-1	validated	p.R85Q	1.000	65	0%	64	32.8%	3	66.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SRM	6723	genome.wustl.edu	37	1	11118932	11118932	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003132.2	-1	validated	p.G102	0.034	25	0%	30	26.7%	224	50.4%	-	-	-	HMMPfam_Spermine_synth,PatternScan_SPERMIDINE_SYNTHASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
TNFRSF1B	7133	genome.wustl.edu	37	1	12248883	12248883	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001066.2	+1	reviewed	p.G37R	0.000	90	0%	101	39.6%	5	0%	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	superfamily_TNF receptor-like
SPEN	23013	genome.wustl.edu	37	1	16265349	16265349	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015001.2	+1	reviewed	p.V3614D	0.982	113	0%	153	27.5%	54	51.8%	unknown(0)	deleterious(0)	-	HMMPfam_SPOC,superfamily_SPOC-like
ZBTB17	7709	genome.wustl.edu	37	1	16271518	16271518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003443.2	-1	validated	p.G281S	0.005	168	0%	221	30.8%	19	57.8%	probably_damaging(0.998)	tolerated(0.26)	deleterious(0.508)	NULL
ATP13A2	23400	genome.wustl.edu	37	1	17318282	17318282	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022089.2	-1	reviewed	p.T733M	0.004	68	0%	82	30.5%	90	51.1%	probably_damaging(0.994)	tolerated(0.07)	deleterious(0.771)	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M
RCC2	55920	genome.wustl.edu	37	1	17748721	17748721	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136204.1	-1	validated	p.D241V	1.000	154	0%	230	29.1%	102	50.9%	benign(0.085)	tolerated(0.23)	neutral(0.048)	superfamily_RCC1/BLIP-II
IGSF21	84966	genome.wustl.edu	37	1	18618480	18618480	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032880.3	+1	validated	p.R102G	1.000	83	0%	105	16.2%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
UBR4	23352	genome.wustl.edu	37	1	19401357	19401357	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020765.2	-1	validated	p.F5174Y	1.000	220	0%	298	32.9%	194	44.3%	probably_damaging(0.99)	tolerated(0.44)	neutral(0.454)	NULL
UBR4	23352	genome.wustl.edu	37	1	19431649	19431649	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020765.2	-1	validated	p.A4180T	1.000	95	0%	137	29.9%	36	44.4%	probably_damaging(0.959)	deleterious(0.04)	deleterious(0.752)	superfamily_ARM repeat
AKR7L	246181	genome.wustl.edu	37	1	19596986	19596986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201252.3	-1	reviewed	p.L156I	1.000	138	0%	239	33.9%	1	0%	benign(0.016)	tolerated(0.74)	neutral(0.002)	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase
EIF4G3	8672	genome.wustl.edu	37	1	21167432	21167432	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003760.3	-1	validated	p.S1270R	1.000	226	0.4%	269	29.7%	17	41.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MA3,HMMSmart_SM00544
ALPL	249	genome.wustl.edu	37	1	21903101	21903101	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000478.4	+1	reviewed	p.G426S	0.996	229	0%	306	30.4%	0	-	benign(0.031)	tolerated(0.06)	neutral(0.324)	HMMPfam_Alk_phosphatase,HMMSmart_alkPPc,superfamily_Alkaline_phosphatase_core
HSPG2	3339	genome.wustl.edu	37	1	22163295	22163295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000374695	-1	known	p.R3452Q	1.000	54	0%	51	35.3%	35	8.5%	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_ig,superfamily_Immunoglobulin
HSPG2	3339	genome.wustl.edu	37	1	22173921	22173921	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000374695	-1	known	p.R2697Q	0.998	95	0%	103	36.9%	37	67.5%	probably_damaging(0.96)	tolerated(0.16)	neutral(0.463)	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_ig,superfamily_Immunoglobulin
C1QB	713	genome.wustl.edu	37	1	22985972	22985972	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000491.3	+1	reviewed	p.G8D	0.001	84	0%	121	29.8%	41	0%	possibly_damaging(0.612)	deleterious(0.05)	deleterious(0.557)	NULL
MYOM3	127294	genome.wustl.edu	37	1	24407871	24407871	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152372.3	-1	validated	p.S786P	1.000	60	1.7%	55	29.1%	0	-	possibly_damaging(0.924)	deleterious(0)	deleterious(0.818)	HMMPfam_fn3,superfamily_Fibronectin type III
NIPAL3	57185	genome.wustl.edu	37	1	24776053	24776053	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020448.4	+1	validated	p.H159	0.549	92	0%	104	30.8%	37	59.4%	-	-	-	HMMPfam_DUF803
RCAN3	11123	genome.wustl.edu	37	1	24859691	24859691	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013441.2	+1	validated	p.A163V	0.997	318	0.3%	374	31.6%	21	66.6%	benign(0.408)	deleterious(0.03)	deleterious(0.496)	HMMPfam_Calcipressin
RPS6KA1	6195	genome.wustl.edu	37	1	26873396	26873396	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001006665.1	+1	reviewed	p.H58	0.372	117	0%	169	33.1%	51	45%	unknown(0)	-	-	superfamily_Kinase_like
ARID1A	8289	genome.wustl.edu	37	1	27107096	27107096	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006015.4	+1	reviewed	p.R2236P	1.000	45	0%	74	44.6%	83	46.9%	probably_damaging(0.996)	tolerated(0.22)	deleterious(0.504)	NULL
C1orf172	126695	genome.wustl.edu	37	1	27277937	27277937	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152365.2	-1	validated	p.R312H	1.000	54	0%	57	29.8%	42	42.8%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
LOC646567	646567	genome.wustl.edu	37	1	27312703	27312703	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_929503.3	-1	model	p.T43	0.577	133	0%	199	36.7%	0	-	-	-	-	HMMPfam_DUF2055
PTAFR	5724	genome.wustl.edu	37	1	28476869	28476869	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000952.4	-1	validated	p.R222C	0.379	128	0%	249	27.7%	4	0%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
RCC1	1104	genome.wustl.edu	37	1	28864439	28864439	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001048194.1	+1	validated	p.L427	1.000	153	0%	198	31.3%	86	44.1%	-	-	-	HMMPfam_RCC1,superfamily_RCC1/BLIP-II
TAF12	6883	genome.wustl.edu	37	1	28931896	28931896	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135218.1	-1	reviewed	p.E146	0.997	411	0%	578	32.7%	52	44.2%	-	-	-	NULL
COL16A1	1307	genome.wustl.edu	37	1	32162879	32162879	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001856.3	-1	reviewed	p.I227N	1.000	117	0%	92	32.6%	2	0%	unknown(0)	deleterious(0)	-	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases
FNDC5	252995	genome.wustl.edu	37	1	33333903	33333903	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153756.2	-1	validated	p.T24	0.032	171	0%	209	27.8%	1	100%	-	-	-	HMMPfam_fn3,superfamily_FN_III-like
HPCA	3208	genome.wustl.edu	37	1	33354832	33354832	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002143.2	+1	reviewed	p.D111	0.410	62	0%	97	26.8%	0	-	-	-	-	HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand
CSMD2	114784	genome.wustl.edu	37	1	33985150	33985150	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052896.3	-1	validated	p.F3478L	1.000	188	0%	317	27.4%	0	-	possibly_damaging(0.58)	tolerated(0.27)	neutral(0.233)	NULL
CSMD2	114784	genome.wustl.edu	37	1	34042917	34042917	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052896.3	-1	validated	p.E2521K	0.976	129	0%	161	26.1%	0	-	benign(0.253)	tolerated(0.5)	neutral(0.036)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD2	114784	genome.wustl.edu	37	1	34554768	34554768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052896.3	-1	validated	p.G32S	0.995	189	0%	256	30.9%	0	-	benign(0.037)	tolerated(0.22)	neutral(0.044)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
GJB4	127534	genome.wustl.edu	37	1	35227330	35227330	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153212.2	+1	reviewed	p.P159A	1.000	64	0%	60	30%	66	50%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_Connexin_CCC
LOC100287174	100287174	genome.wustl.edu	37	1	35250735	35250735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342072.1	-1	model	p.V167M	0.998	295	0.3%	359	31.8%	145	55.8%	-	-	-	NULL
EIF2C1	26523	genome.wustl.edu	37	1	36379808	36379808	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012199.2	+1	reviewed	p.V589A	1.000	163	0%	188	25.5%	5	60%	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	HMMPfam_Piwi,superfamily_Ribonuclease H-like
ADPRHL2	54936	genome.wustl.edu	37	1	36557678	36557678	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017825.2	+1	reviewed	p.S228	0.000	512	0%	912	32%	72	56.9%	-	-	-	HMMPfam_ADP_ribosyl_GH,superfamily_Ribosyl_crysJ1
MAP7D1	55700	genome.wustl.edu	37	1	36636620	36636620	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018067.3	+1	provisional	p.D32G	1.000	45	0%	66	31.8%	26	26.9%	probably_damaging(0.968)	deleterious(0)	deleterious(0.855)	NULL
CSF3R	1441	genome.wustl.edu	37	1	36937171	36937171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_156039.2	-1	reviewed	p.A383V	0.000	60	0%	73	27.4%	2	0%	benign(0.001)	tolerated(0.38)	neutral(0.018)	HMMSmart_FN3,superfamily_FN_III-like
EPHA10	284656	genome.wustl.edu	37	1	38227478	38227478	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099439.1	-1	validated	p.R150H	0.952	46	0%	53	34%	0	-	possibly_damaging(0.943)	tolerated(0.49)	neutral(0.398)	HMMPfam_Ephrin_lbd,HMMSmart_SM00615,superfamily_Galactose-binding domain-like
FHL3	2275	genome.wustl.edu	37	1	38463734	38463734	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004468.3	-1	validated	p.Q134	1.000	42	0%	55	43.6%	38	55.2%	-	-	-	HMMPfam_LIM,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,superfamily_SSF57716
MFSD2A	84879	genome.wustl.edu	37	1	40432533	40432533	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136493.1	+1	validated	p.R299W	0.983	131	0%	142	33.1%	7	14.2%	benign(0.305)	deleterious(0.02)	deleterious(0.478)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
RLF	6018	genome.wustl.edu	37	1	40697287	40697287	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012421.3	+1	validated	p.T349M	1.000	595	0%	623	26%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZMPSTE24	10269	genome.wustl.edu	37	1	40737590	40737590	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005857.3	+1	reviewed	p.Y218H	1.000	346	0%	436	31.9%	25	28%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
SLFNL1	200172	genome.wustl.edu	37	1	41486130	41486130	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144990.3	-1	validated	p.R68Q	0.986	33	0%	29	24.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
HIVEP3	59269	genome.wustl.edu	37	1	41976655	41976655	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024503.3	-1	validated	p.S2230G	1.000	61	0%	64	23.4%	1	0%	possibly_damaging(0.888)	deleterious(0)	deleterious(0.792)	NULL
HIVEP3	59269	genome.wustl.edu	37	1	41990569	41990569	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024503.3	-1	validated	p.N1740	1.000	256	0%	284	28.2%	0	-	-	-	-	NULL
SZT2	23334	genome.wustl.edu	37	1	43900083	43900083	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015284.2	+1	predicted	p.P1045L	0.767	75	0%	78	33.3%	0	-	benign(0.002)	tolerated(0.15)	neutral(0.241)	NULL
SZT2	23334	genome.wustl.edu	37	1	43909406	43909406	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015284.2	+1	predicted	p.Q2023*	1.000	252	0%	303	30.7%	6	16.6%	-	-	-	NULL
PTPRF	5792	genome.wustl.edu	37	1	44084835	44084835	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000414879	+1	known	p.Q961*	1.000	54	0%	59	39%	104	42.3%	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
ERI3	79033	genome.wustl.edu	37	1	44804931	44804931	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024066.1	-1	validated	p.S92L	0.996	145	0%	123	32.5%	25	16%	benign(0)	deleterious(0)	neutral(0.445)	NULL
C1orf228	339541	genome.wustl.edu	37	1	45191044	45191044	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145636.1	+1	validated	p.H431R	0.000	63	0%	82	28%	4	0%	benign(0.001)	tolerated(0.17)	neutral(0.059)	NULL
CCDC17	149483	genome.wustl.edu	37	1	46089487	46089487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114938.1	-1	provisional	p.R32H	1.000	189	0%	272	18.8%	0	-	benign(0.079)	tolerated(0.16)	neutral(0.065)	NULL
AGBL4	84871	genome.wustl.edu	37	1	49052678	49052678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032785.3	-1	validated	p.A422V	1.000	69	0%	66	22.7%	0	-	possibly_damaging(0.564)	deleterious(0.02)	deleterious(0.576)	HMMPfam_Peptidase_M14,superfamily_Zn-dependent exopeptidases
KTI12	112970	genome.wustl.edu	37	1	52498798	52498798	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138417.2	-1	validated	p.L212	0.014	37	0%	35	31.4%	5	60%	-	-	-	HMMPfam_KTI12,superfamily_SSF52540
ORC1	4998	genome.wustl.edu	37	1	52854916	52854916	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004153.2	-1	reviewed	p.T387N	0.997	340	0%	429	33.3%	3	33.3%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
PRPF38A	84950	genome.wustl.edu	37	1	52880433	52880433	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032864.3	+1	validated	e8-1	1.000	77	0%	89	30.3%	1	0%	-	-	-	-
DMRTB1	63948	genome.wustl.edu	37	1	53925305	53925305	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033067.1	+1	provisional	p.A60D	0.000	9	0.000	14	0.500	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_DM
CYB5RL	606495	genome.wustl.edu	37	1	54649860	54649860	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031672.2	-1	provisional	p.G172R	0.990	122	0%	164	29.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FAD_binding_6,superfamily_Riboflavin synthase domain-like,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain
FAM151A	338094	genome.wustl.edu	37	1	55075009	55075009	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176782.2	-1	validated	p.T564A	0.938	62	0%	55	32.7%	0	-	possibly_damaging(0.882)	tolerated(0.76)	neutral(0.345)	NULL
BSND	7809	genome.wustl.edu	37	1	55472947	55472947	+	Splice_Site	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_057176.2	+1	reviewed	e3+2	0.938	109	0%	116	34.5%	0	-	-	-	-	-
USP24	23358	genome.wustl.edu	37	1	55607379	55607379	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015306.2	-1	validated	p.P727L	1.000	355	0%	332	29.5%	8	50%	possibly_damaging(0.925)	tolerated(0.1)	deleterious(0.660)	NULL
PPAP2B	8613	genome.wustl.edu	37	1	56990067	56990067	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003713.3	-1	reviewed	p.R153C	1.000	157	0%	117	35%	18	22.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PAP2,HMMSmart_SM00014,superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase
NFIA	4774	genome.wustl.edu	37	1	61869859	61869859	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145512.1	+1	reviewed	p.A432T	1.000	340	0%	397	23.9%	4	50%	possibly_damaging(0.85)	tolerated(0.86)	neutral(0.328)	HMMPfam_CTF_NFI
KANK4	163782	genome.wustl.edu	37	1	62737149	62737149	+	Splice_Site	SNP	C	C	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181712.4	-1	validated	e3+1	1.000	281	0%	413	18.9%	0	-	-	-	-	-
KANK4	163782	genome.wustl.edu	37	1	62740328	62740328	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181712.4	-1	validated	p.L150F	0.006	46	0%	72	44.4%	0	-	possibly_damaging(0.6)	tolerated(0.06)	deleterious(0.530)	NULL
DOCK7	85440	genome.wustl.edu	37	1	63009348	63009348	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000454575	-1	known	p.G148R	1.000	358	0.3%	354	32.8%	5	60%	-	-	-	NULL
INSL5	10022	genome.wustl.edu	37	1	67266795	67266795	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005478.3	-1	reviewed	p.V37A	0.010	176	0%	193	29.5%	0	-	possibly_damaging(0.711)	tolerated(0.08)	deleterious(0.557)	HMMSmart_IlGF,superfamily_Insulin-like
MIER1	57708	genome.wustl.edu	37	1	67436568	67436568	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020948.3	+1	validated	p.A255T	1.000	194	0%	220	32.7%	3	33.3%	benign(0.097)	tolerated(0.31)	neutral(0.035)	HMMPfam_ELM2
DEPDC1	55635	genome.wustl.edu	37	1	68947163	68947163	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114120.1	-1	validated	p.D632A	1.000	376	0%	323	31.3%	9	33.3%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	superfamily_Rho_GAP
DEPDC1	55635	genome.wustl.edu	37	1	68955225	68955225	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114120.1	-1	validated	p.I127M	0.688	337	0%	309	32.4%	4	25%	benign(0.025)	tolerated(0.16)	neutral(0.060)	superfamily_SSF46785
LRRC7	57554	genome.wustl.edu	37	1	70300475	70300475	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020794.2	+1	validated	p.G133	0.998	557	0%	404	29.7%	0	-	-	-	-	superfamily_L domain-like
PTGFR	5737	genome.wustl.edu	37	1	78958571	78958571	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000959.3	+1	reviewed	p.I48N	1.000	190	0%	232	34.1%	2	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_7tm_1,superfamily_SSF81321
IFI44L	10964	genome.wustl.edu	37	1	79106802	79106802	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006820.2	+1	validated	p.S382N	0.009	324	0%	256	36.3%	58	39.6%	benign(0.027)	tolerated(0.35)	neutral(0.022)	NULL
ZNHIT6	54680	genome.wustl.edu	37	1	86167899	86167899	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017953.3	-1	validated	p.L320	1.000	252	0%	239	27.6%	5	0%	-	-	-	NULL
COL24A1	255631	genome.wustl.edu	37	1	86246925	86246925	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152890.5	-1	validated	p.I1439T	1.000	218	0%	177	22.6%	0	-	possibly_damaging(0.932)	tolerated(0.56)	neutral(0.385)	HMMPfam_Collagen
COL24A1	255631	genome.wustl.edu	37	1	86554870	86554870	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152890.5	-1	validated	p.M565T	0.391	142	0%	148	28.4%	0	-	benign(0.018)	tolerated(0.61)	neutral(0.005)	HMMPfam_Collagen
PKN2	5586	genome.wustl.edu	37	1	89237366	89237366	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000436111	+1	known	p.I45V	1.000	138	0%	176	29%	14	57.1%	-	-	-	HMMPfam_HR1,HMMSmart_SM00742,superfamily_HR1 repeat
BTBD8	284697	genome.wustl.edu	37	1	92612780	92612780	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183242.3	+1	validated	p.I325T	1.000	608	0.2%	545	33.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C1orf146	388649	genome.wustl.edu	37	1	92710356	92710356	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012425.1	+1	validated	p.R117Q	1.000	208	1%	244	27.5%	0	-	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	NULL
CDC14A	8556	genome.wustl.edu	37	1	100843126	100843126	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033312.2	+1	reviewed	p.L55	1.000	338	0.3%	382	32.5%	0	-	-	-	-	superfamily_(Phosphotyrosine protein) phosphatases II
EXTL2	2135	genome.wustl.edu	37	1	101339546	101339546	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033025.1	-1	validated	p.M315I	1.000	148	0%	107	24.3%	1	0%	probably_damaging(0.99)	tolerated(0.09)	deleterious(0.738)	HMMPfam_Glyco_transf_64,superfamily_Nucleotide-diphospho-sugar transferases
RNPC3	55599	genome.wustl.edu	37	1	104076396	104076396	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017619.3	+1	reviewed	p.G92	1.000	335	0%	308	34.1%	5	40%	-	-	-	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
PRMT6	55170	genome.wustl.edu	37	1	107600301	107600301	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018137.2	+1	validated	p.L263F	0.602	54	0%	70	37.1%	8	25%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
VAV3	10451	genome.wustl.edu	37	1	108116790	108116790	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006113.4	-1	reviewed	p.I794T	1.000	322	0.3%	465	33.3%	18	61.1%	benign(0.019)	tolerated(0.29)	neutral(0.030)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,superfamily_SH2 domain
CELSR2	1952	genome.wustl.edu	37	1	109811243	109811243	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001408.2	+1	reviewed	p.N2120S	1.000	51	0%	52	34.6%	72	45.8%	benign(0.047)	tolerated(0.82)	neutral(0.004)	NULL
SORT1	6272	genome.wustl.edu	37	1	109859473	109859473	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002959.4	-1	reviewed	p.Q750R	1.000	544	0%	458	28.4%	54	61.1%	benign(0.055)	tolerated(0.41)	neutral(0.018)	NULL
DENND2D	79961	genome.wustl.edu	37	1	111740595	111740595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024901.3	-1	provisional	p.V125I	1.000	150	0%	200	34%	28	35.7%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_uDENN,HMMSmart_SM00800
WNT2B	7482	genome.wustl.edu	37	1	113057648	113057648	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024494.2	+1	reviewed	p.R112H	1.000	84	0%	84	28.6%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_wnt,HMMSmart_SM00097
LRIG2	9860	genome.wustl.edu	37	1	113636120	113636120	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014813.1	+1	provisional	p.D150G	1.000	307	0%	318	29.2%	1	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_LRR_1,superfamily_SSF52047
PTPN22	26191	genome.wustl.edu	37	1	114367766	114367766	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015967.4	-1	reviewed	p.K760M	1.000	75	0%	68	23.5%	4	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
AP4B1	10717	genome.wustl.edu	37	1	114444488	114444488	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006594.2	-1	validated	p.Y120H	1.000	231	0%	232	43.5%	11	27.2%	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
HIPK1	204851	genome.wustl.edu	37	1	114506076	114506076	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198268.1	+1	reviewed	p.A724V	1.000	70	0%	123	39.8%	7	28.5%	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	NULL
TRIM33	51592	genome.wustl.edu	37	1	114940373	114940373	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015906.3	-1	reviewed	p.Q1094R	1.000	386	0%	502	33.3%	11	36.3%	benign(0.069)	tolerated(0.29)	neutral(0.034)	NULL
TBX15	6913	genome.wustl.edu	37	1	119427953	119427953	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152380.2	-1	reviewed	p.R298Q	1.000	83	0%	106	30.2%	0	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
RPRD2	23248	genome.wustl.edu	37	1	150390138	150390138	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015203.3	+1	validated	p.K91R	1.000	525	0%	552	35.3%	10	40%	benign(0.109)	deleterious(0.04)	neutral(0.357)	HMMSmart_SM00582,HMMPfam_DUF618,superfamily_ENTH/VHS domain
TARS2	80222	genome.wustl.edu	37	1	150470076	150470076	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025150.3	+1	provisional	p.Q364R	0.961	131	0%	178	35.4%	11	45.4%	benign(0)	tolerated(0.37)	neutral(0.019)	HMMPfam_tRNA-synt_2b,superfamily_SSF55681
FLG	2312	genome.wustl.edu	37	1	152280451	152280451	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002016.1	-1	reviewed	p.T2304I	0.000	549	0%	562	29%	0	-	unknown(0)	tolerated(0.1)	-	NULL
IVL	3713	genome.wustl.edu	37	1	152882284	152882284	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005547.2	+1	reviewed	p.Q4R	0.987	47	0%	57	33.3%	1	100%	unknown(0)	deleterious(0)	-	HMMPfam_Involucrin_N,PatternScan_INVOLUCRIN
IVL	3713	genome.wustl.edu	37	1	152883128	152883128	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005547.2	+1	reviewed	p.Y285	0.000	97	0%	153	23.5%	1	100%	-	-	-	HMMPfam_Involucrin
SPRR2A	6700	genome.wustl.edu	37	1	153029150	153029150	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005988.2	-1	validated	p.P21Q	0.002	210	0%	272	19.1%	1	0%	unknown(0)	-	-	NULL
GATAD2B	57459	genome.wustl.edu	37	1	153785904	153785904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020699.2	-1	validated	p.R414Q	1.000	196	0%	245	29%	9	22.2%	possibly_damaging(0.619)	tolerated(0.35)	neutral(0.236)	superfamily_SSF57716
CREB3L4	148327	genome.wustl.edu	37	1	153945526	153945526	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130898.2	+1	provisional	p.K239E	1.000	250	0%	359	31.2%	10	70%	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMSmart_BRLZ,superfamily_Euk_transcr_DNA,HMMPfam_bZIP_1
DCST1	149095	genome.wustl.edu	37	1	155013955	155013955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152494.2	+1	validated	p.T205M	0.000	30	0%	51	17.6%	0	-	possibly_damaging(0.768)	tolerated(0.15)	deleterious(0.526)	NULL
TRIM46	80128	genome.wustl.edu	37	1	155156524	155156524	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025058.3	+1	validated	p.L713R	1.000	234	0%	255	25.5%	2	0%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
HCN3	57657	genome.wustl.edu	37	1	155257812	155257812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020897.1	+1	validated	p.R628Q	0.997	52	0%	54	25.9%	12	58.3%	benign(0.064)	tolerated(0.18)	neutral(0.060)	NULL
RUSC1	23623	genome.wustl.edu	37	1	155292373	155292373	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105203.1	+1	validated	p.P270H	0.083	234	0%	253	31.6%	2	50%	benign(0.09)	deleterious(0.02)	neutral(0.390)	NULL
KIAA0907	22889	genome.wustl.edu	37	1	155883966	155883966	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014949.2	-1	predicted	p.Y597	0.998	210	0%	339	33.9%	22	40.9%	-	-	-	NULL
RHBG	57127	genome.wustl.edu	37	1	156339153	156339153	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020407.3	+1	reviewed	p.H38R	0.836	73	0%	91	35.2%	1	100%	benign(0)	tolerated(0.46)	neutral(0.012)	HMMPfam_Ammonium_transp
RHBG	57127	genome.wustl.edu	37	1	156348094	156348094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020407.3	+1	reviewed	p.G193R	1.000	57	0%	79	27.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Ammonium_transp,superfamily_Ammonium ransporter (Pfam 00909)
NES	10763	genome.wustl.edu	37	1	156640193	156640193	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006617.1	-1	reviewed	p.Q1263*	0.094	71	0%	85	34.1%	6	0%	-	-	-	NULL
RRNAD1	51093	genome.wustl.edu	37	1	156703831	156703831	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015997.3	+1	validated	p.H223Y	0.436	194	0%	230	35.2%	10	30%	possibly_damaging(0.908)	tolerated(0.68)	neutral(0.363)	NULL
KIRREL	55243	genome.wustl.edu	37	1	158059406	158059406	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018240.5	+1	validated	p.L387F	0.975	113	0%	113	31%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
SPTA1	6708	genome.wustl.edu	37	1	158622338	158622338	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003126.2	-1	reviewed	p.I1098	0.720	384	0%	384	28.9%	3	100%	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
OR6K3	391114	genome.wustl.edu	37	1	158687244	158687244	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005327.2	-1	validated	p.V237D	0.004	194	0%	112	31.2%	0	-	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	HMMPfam_7tm_1,superfamily_SSF81321
OR6K6	128371	genome.wustl.edu	37	1	158725191	158725191	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005184.1	+1	provisional	p.F196L	0.990	254	0%	294	27.9%	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
VSIG8	391123	genome.wustl.edu	37	1	159825802	159825802	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013661.1	-1	provisional	p.V281A	0.607	26	0%	30	33.3%	0	-	benign(0.191)	tolerated(0.17)	neutral(0.077)	NULL
TAGLN2	8407	genome.wustl.edu	37	1	159889502	159889502	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003564.1	-1	reviewed	p.R102C	1.000	172	0%	193	24.4%	1213	43.5%	possibly_damaging(0.853)	deleterious(0.02)	deleterious(0.712)	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology
IGSF8	93185	genome.wustl.edu	37	1	160063887	160063887	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052868.2	-1	provisional	p.R173C	0.974	65	0%	64	34.4%	89	47.1%	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	HMMSmart_SM00409,superfamily_Immunoglobulin
NIT1	4817	genome.wustl.edu	37	1	161090413	161090413	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005600.1	+1	provisional	p.V281A	1.000	59	0%	76	46.1%	70	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Carbon-nitrogen hydrolase
HSPA6	3310	genome.wustl.edu	37	1	161495521	161495521	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002155.3	+1	validated	p.G358D	1.000	72	0%	73	9.6%	7	28.5%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_HSP70,superfamily_Actin-like ATPase domain
ATF6	22926	genome.wustl.edu	37	1	161771875	161771875	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007348.2	+1	validated	p.V241A	0.993	265	0%	295	30.8%	35	45.7%	benign(0.354)	tolerated(0.45)	neutral(0.124)	NULL
GPR161	23432	genome.wustl.edu	37	1	168066186	168066186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153832.1	-1	provisional	p.R220H	1.000	71	0%	89	36%	4	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PRRX1	5396	genome.wustl.edu	37	1	170688905	170688905	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022716.2	+1	reviewed	p.Q94*	1.000	151	0%	109	18.3%	0	-	-	-	-	HMMSmart_SM00389,superfamily_Homeodomain-like
C1orf129	80133	genome.wustl.edu	37	1	170967396	170967396	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025063.2	+1	validated	p.V526A	0.049	501	0%	372	31.2%	0	-	benign(0.003)	tolerated(0.21)	neutral(0.044)	NULL
SLC9A11	284525	genome.wustl.edu	37	1	173494066	173494066	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178527.3	-1	validated	p.V789A	1.000	215	0%	230	31.7%	0	-	benign(0.003)	tolerated(0.42)	neutral(0.014)	NULL
TNN	63923	genome.wustl.edu	37	1	175063311	175063311	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022093.1	+1	validated	p.G504*	1.000	98	0%	141	24.1%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TNN	63923	genome.wustl.edu	37	1	175086250	175086250	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022093.1	+1	validated	p.T765	0.218	168	0.6%	202	37.1%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
ABL2	27	genome.wustl.edu	37	1	179090839	179090839	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007314.3	-1	reviewed	p.E284G	1.000	373	0%	430	32.6%	1	0%	possibly_damaging(0.764)	deleterious(0.04)	deleterious(0.632)	superfamily_Protein kinase-like (PK-like),superfamily_SH2 domain
TOR1AIP1	26092	genome.wustl.edu	37	1	179887056	179887056	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000447964	+1	known	p.Y213C	0.008	182	0%	194	28.4%	15	46.6%	-	-	-	HMMPfam_LAP1C
CEP350	9857	genome.wustl.edu	37	1	179983640	179983640	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014810.4	+1	reviewed	p.Q684H	1.000	67	0%	72	27.8%	1	100%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
IER5	51278	genome.wustl.edu	37	1	181058840	181058840	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016545.4	+1	validated	p.N268D	1.000	21	0%	31	32.3%	67	44.7%	possibly_damaging(0.891)	deleterious(0.04)	deleterious(0.700)	HMMPfam_IER
CACNA1E	777	genome.wustl.edu	37	1	181708366	181708366	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000721.2	+1	reviewed	p.G1232	0.704	676	0%	939	31.9%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
GLUL	2752	genome.wustl.edu	37	1	182353701	182353701	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033044.2	-1	reviewed	p.A321T	1.000	233	0%	273	30%	80	31.2%	possibly_damaging(0.885)	tolerated(0.06)	deleterious(0.668)	HMMPfam_Gln-synt_C,superfamily_Glutamine synthetase/guanido kinase
DHX9	1660	genome.wustl.edu	37	1	182856295	182856295	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001357.4	+1	reviewed	p.Y1180C	0.000	239	0%	268	38.1%	226	45.1%	probably_damaging(0.992)	tolerated(0.07)	deleterious(0.766)	NULL
HMCN1	83872	genome.wustl.edu	37	1	185939508	185939508	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031935.2	+1	reviewed	p.P752T	0.677	248	0%	186	31.2%	0	-	benign(0)	tolerated(0.7)	neutral(0.002)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
ASPM	259266	genome.wustl.edu	37	1	197071371	197071371	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018136.4	-1	reviewed	p.A2337V	0.992	314	0%	151	29.1%	6	50%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
TMEM9	252839	genome.wustl.edu	37	1	201123047	201123047	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016456.3	-1	validated	p.K2M	1.000	85	0%	121	28.1%	59	37.2%	possibly_damaging(0.949)	deleterious(0)	deleterious(0.838)	NULL
NAV1	89796	genome.wustl.edu	37	1	201752920	201752920	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020443.4	+1	reviewed	p.T915I	0.306	65	0%	70	24.3%	0	-	benign(0.071)	deleterious(0.05)	neutral(0.350)	NULL
PTPN7	5778	genome.wustl.edu	37	1	202121772	202121772	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080588.1	-1	reviewed	p.H297R	1.000	114	0%	159	36.5%	5	0%	benign(0.211)	deleterious(0.01)	neutral(0.426)	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
ADIPOR1	51094	genome.wustl.edu	37	1	202912933	202912933	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127687.1	-1	validated	p.A253V	1.000	89	0%	189	34.4%	116	48.2%	possibly_damaging(0.49)	deleterious(0)	deleterious(0.608)	HMMPfam_HlyIII
MYBPH	4608	genome.wustl.edu	37	1	203140556	203140556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004997.2	-1	validated	p.V250M	0.436	53	0%	54	25.9%	0	-	possibly_damaging(0.63)	deleterious(0.01)	deleterious(0.626)	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
LAX1	54900	genome.wustl.edu	37	1	203743395	203743395	+	Silent	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017773.3	+1	validated	p.S261	0.954	197	0%	263	33.1%	2	0%	-	-	-	NULL
ETNK2	55224	genome.wustl.edu	37	1	204109238	204109238	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018208.2	-1	reviewed	p.R265W	0.859	212	0%	279	29.7%	4	25%	benign(0.167)	deleterious(0.02)	neutral(0.398)	HMMPfam_Choline_kinase,superfamily_Kinase_like
PIK3C2B	5287	genome.wustl.edu	37	1	204438707	204438707	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002646.3	-1	reviewed	p.R75Q	0.063	194	0%	266	31.2%	8	25%	benign(0)	tolerated(0.2)	neutral(0.049)	NULL
NFASC	23114	genome.wustl.edu	37	1	204942425	204942425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015090.3	+1	reviewed	p.R397H	0.998	186	0%	172	34.3%	0	-	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
NFASC	23114	genome.wustl.edu	37	1	204948098	204948098	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015090.3	+1	reviewed	p.R623W	1.000	16	0%	25	36%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_FN_III-like,superfamily_SSF48726
NUAK2	81788	genome.wustl.edu	37	1	205280955	205280955	+	Splice_Site	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030952.1	-1	provisional	e2-2	1.000	372	0%	553	31.3%	0	-	-	-	-	-
MFSD4	148808	genome.wustl.edu	37	1	205538344	205538344	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181644.4	+1	validated	p.S49	0.994	10	0%	17	35.3%	0	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
SRGAP2	23380	genome.wustl.edu	37	1	206566940	206566940	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000295713	+1	known	p.Q161*	0.999	473	15.4%	511	18.4%	18	0%	-	-	-	NULL
LGTN	100529141	genome.wustl.edu	37	1	206767137	206767137	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006893.2	-1	reviewed	p.T505	0.001	56	0%	65	33.8%	53	47.1%	-	-	-	HMMPfam_SUI1,superfamily_eIF1-like
DYRK3	8444	genome.wustl.edu	37	1	206821276	206821276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003582.2	+1	reviewed	p.R245C	1.000	92	0%	120	35.8%	4	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CR2	1380	genome.wustl.edu	37	1	207648474	207648474	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001006658.2	+1	reviewed	p.P877S	0.028	345	0%	333	34.2%	0	-	benign(0)	deleterious(0.03)	neutral(0.364)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
PLXNA2	5362	genome.wustl.edu	37	1	208224749	208224749	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025179.3	-1	reviewed	p.V1005M	0.999	78	0%	121	39.7%	7	28.5%	probably_damaging(0.98)	tolerated(0.06)	deleterious(0.746)	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
HHAT	55733	genome.wustl.edu	37	1	210577980	210577980	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122834.2	+1	validated	p.L214*	1.000	87	0%	88	35.2%	0	-	-	-	-	HMMPfam_MBOAT
SLC30A1	7779	genome.wustl.edu	37	1	211751598	211751598	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021194.2	-1	validated	p.V119	1.000	22	0%	27	22.2%	23	60.8%	-	-	-	HMMPfam_Cation_efflux
SMYD2	56950	genome.wustl.edu	37	1	214505386	214505386	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020197.2	+1	validated	p.C321	0.975	184	0%	223	39.9%	61	34.4%	-	-	-	NULL
KCTD3	51133	genome.wustl.edu	37	1	215752457	215752457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016121.3	+1	validated	p.T171M	0.591	237	0%	352	31.5%	5	20%	possibly_damaging(0.66)	deleterious(0.01)	deleterious(0.639)	NULL
RRP15	51018	genome.wustl.edu	37	1	218478370	218478370	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016052.3	+1	reviewed	p.R136C	1.000	317	0%	313	34.8%	20	20%	possibly_damaging(0.861)	tolerated(0.08)	deleterious(0.633)	HMMPfam_Rrp15p
EPRS	2058	genome.wustl.edu	37	1	220192388	220192388	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004446.2	-1	reviewed	p.V461	0.003	397	0%	403	33.5%	18	66.6%	-	-	-	HMMPfam_tRNA-synt_1c,superfamily_SSF52374
HLX	3142	genome.wustl.edu	37	1	221057975	221057975	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021958.3	+1	validated	p.A466P	0.000	8	0.000	12	0.417	22	18.1%	benign(0.431)	deleterious(0)	deleterious(0.585)	NULL
DNAH14	127602	genome.wustl.edu	37	1	225569143	225569143	+	Silent	SNP	A	A	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001373.1	+1	validated	p.R4211	0.979	158	0%	166	19.3%	1	0%	-	-	-	HMMPfam_Dynein_heavy
LIN9	286826	genome.wustl.edu	37	1	226426721	226426721	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173083.2	-1	provisional	p.N415S	1.000	360	0%	466	32.8%	7	42.8%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
ITPKB	3707	genome.wustl.edu	37	1	226924077	226924077	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002221.3	-1	reviewed	p.G361	0.000	49	2%	44	27.3%	10	50%	-	-	-	NULL
OBSCN	84033	genome.wustl.edu	37	1	228557899	228557899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098623.1	+1	reviewed	p.R6709Q	0.997	54	0%	56	35.7%	0	-	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
OBSCN	84033	genome.wustl.edu	37	1	228560043	228560043	+	Silent	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000441106	+1	known	p.G1805C	0.434	26	0%	42	38.1%	0	-	-	-	-	NULL
SIPA1L2	57568	genome.wustl.edu	37	1	232600901	232600901	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020808.3	-1	validated	p.A835	0.984	197	0%	278	30.6%	4	75%	-	-	-	NULL
TARBP1	6894	genome.wustl.edu	37	1	234608512	234608512	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005646.3	-1	reviewed	p.L326P	0.962	102	0%	93	36.6%	1	100%	probably_damaging(0.992)	tolerated(0.08)	deleterious(0.748)	NULL
HEATR1	55127	genome.wustl.edu	37	1	236730044	236730044	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018072.4	-1	validated	p.D1404N	0.000	147	0%	138	25.4%	10	50%	benign(0.039)	tolerated(0.56)	neutral(0.009)	superfamily_ARM-type_fold
OR2C3	81472	genome.wustl.edu	37	1	247694878	247694878	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198074.4	-1	validated	p.G312	0.004	62	0%	118	33.1%	0	-	-	-	-	NULL
OR6F1	343169	genome.wustl.edu	37	1	247875694	247875694	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005286.1	-1	provisional	p.R122C	1.000	99	0%	97	43.3%	0	-	benign(0.303)	deleterious(0)	deleterious(0.538)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
OR2T27	403239	genome.wustl.edu	37	1	248813822	248813822	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001824.1	-1	provisional	p.R122C	0.994	60	0%	78	26.9%	0	-	possibly_damaging(0.661)	deleterious(0.02)	deleterious(0.617)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
SH3BP5L	80851	genome.wustl.edu	37	1	249106303	249106303	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030645.1	-1	provisional	p.P326	0.000	13	0%	22	50%	8	37.5%	-	-	-	NULL
TPO	7173	genome.wustl.edu	37	2	1507739	1507739	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000446278	+1	known	p.T277M	0.038	67	0%	84	36.9%	0	-	-	-	-	HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
PXDN	7837	genome.wustl.edu	37	2	1642697	1642697	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012293.1	-1	validated	p.R1376H	0.001	407	0.2%	534	35.2%	4	0%	benign(0.001)	tolerated(0.13)	neutral(0.253)	NULL
MYT1L	23040	genome.wustl.edu	37	2	1842975	1842975	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015025.2	-1	validated	p.T1007M	1.000	22	0%	43	30.2%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_zf-C2HC,superfamily_SSF103637
MYT1L	23040	genome.wustl.edu	37	2	1855434	1855434	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015025.2	-1	validated	p.G916D	1.000	161	0.6%	245	34.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2HC,superfamily_SSF103637
TAF1B	9014	genome.wustl.edu	37	2	10045002	10045002	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005680.2	+1	reviewed	p.Y274	0.998	149	0%	149	30.2%	1	100%	-	-	-	NULL
GREB1	9687	genome.wustl.edu	37	2	11738979	11738979	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014668.3	+1	reviewed	p.L776I	0.995	313	0%	338	19.2%	0	-	probably_damaging(0.991)	tolerated(0.18)	deleterious(0.500)	NULL
FAM49A	81553	genome.wustl.edu	37	2	16743311	16743311	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030797.3	-1	validated	p.E133K	1.000	359	0.3%	297	29.3%	1	0%	benign(0.195)	tolerated(0.13)	neutral(0.271)	HMMPfam_DUF1394
SMC6	79677	genome.wustl.edu	37	2	17906572	17906572	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142286.1	-1	validated	p.I226	1.000	588	0%	440	28%	2	100%	-	-	-	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
MFSD2B	388931	genome.wustl.edu	37	2	24245740	24245740	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080473.1	+1	provisional	p.F343V	0.968	261	0%	419	27.7%	0	-	probably_damaging(0.971)	deleterious(0.01)	deleterious(0.819)	superfamily_MFS_gen_substrate_transporter
ADCY3	109	genome.wustl.edu	37	2	25050456	25050456	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004036.3	-1	reviewed	p.E818	1.000	237	0.4%	221	30.8%	19	57.8%	-	-	-	NULL
POMC	5443	genome.wustl.edu	37	2	25384262	25384262	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000939.2	-1	reviewed	p.A164	0.995	16	0%	26	30.8%	1	0%	-	-	-	HMMPfam_ACTH_domain
AGBL5	60509	genome.wustl.edu	37	2	27279507	27279507	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021831.5	+1	validated	p.Y461C	1.000	139	0%	158	29.1%	23	30.4%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	superfamily_Zn-dependent exopeptidases
TCF23	150921	genome.wustl.edu	37	2	27373203	27373203	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175769.2	+1	reviewed	p.L145	1.000	23	0%	31	19.4%	0	-	-	-	-	NULL
FNDC4	64838	genome.wustl.edu	37	2	27715551	27715551	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022823.2	-1	validated	p.R217	1.000	491	0%	604	30.1%	4	50%	-	-	-	NULL
BRE	9577	genome.wustl.edu	37	2	28210900	28210900	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004899.3	+1	validated	p.P82	0.913	285	0%	230	33.9%	24	41.6%	-	-	-	HMMPfam_BRE
FAM179A	165186	genome.wustl.edu	37	2	29221077	29221077	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199280.2	+1	validated	p.L33F	0.006	40	0%	49	30.6%	0	-	possibly_damaging(0.45)	tolerated(0.27)	neutral(0.181)	NULL
BIRC6	57448	genome.wustl.edu	37	2	32702455	32702455	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016252.3	+1	reviewed	p.R2291H	1.000	293	0%	275	28%	4	25%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	NULL
BIRC6	57448	genome.wustl.edu	37	2	32707515	32707515	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016252.3	+1	reviewed	p.Y2521H	1.000	331	0%	357	33.6%	2	100%	probably_damaging(0.991)	tolerated(0.49)	neutral(0.455)	NULL
TTC27	55622	genome.wustl.edu	37	2	32897376	32897376	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017735.3	+1	provisional	p.I326T	1.000	372	0%	441	26.8%	13	46.1%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	NULL
LTBP1	4052	genome.wustl.edu	37	2	33540325	33540325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206943.2	+1	reviewed	p.R1241H	0.009	182	0%	213	36.6%	4	50%	benign(0.023)	tolerated(0.13)	neutral(0.254)	HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_EGF/Laminin
C2orf56	55471	genome.wustl.edu	37	2	37474631	37474631	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144736.4	+1	validated	p.L323	0.009	286	0%	261	35.6%	19	47.3%	-	-	-	HMMPfam_DUF185
OXER1	165140	genome.wustl.edu	37	2	42990177	42990177	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148962.4	-1	validated	p.S381	0.000	83	0%	87	28.7%	0	-	-	-	-	superfamily_SSF81321
ZFP36L2	678	genome.wustl.edu	37	2	43452645	43452645	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006887.4	-1	reviewed	p.T100A	0.437	17	0%	26	23.1%	31	12.9%	benign(0.24)	tolerated(0.43)	neutral(0.037)	HMMPfam_Tis11B_N
EPAS1	2034	genome.wustl.edu	37	2	46607619	46607619	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001430.4	+1	reviewed	p.P603H	1.000	85	0%	87	25.3%	52	38.4%	possibly_damaging(0.781)	tolerated(0.08)	deleterious(0.593)	NULL
BCL11A	53335	genome.wustl.edu	37	2	60688426	60688426	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022893.3	-1	reviewed	p.R541C	1.000	5	0.000	11	0.364	1	0%	probably_damaging(0.978)	tolerated(0.14)	deleterious(0.670)	NULL
USP34	9736	genome.wustl.edu	37	2	61541871	61541871	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014709.3	-1	validated	p.G1131C	1.000	423	0%	414	27.8%	4	100%	probably_damaging(0.998)	-	-	NULL
SERTAD2	9792	genome.wustl.edu	37	2	64863437	64863437	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014755.2	-1	validated	p.T190M	0.000	99	0%	112	33%	2	50%	benign(0.201)	deleterious(0.04)	neutral(0.368)	NULL
ETAA1	54465	genome.wustl.edu	37	2	67626326	67626326	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019002.3	+1	validated	p.A83	0.023	177	0%	235	31.9%	3	33.3%	-	-	-	NULL
CLEC4F	165530	genome.wustl.edu	37	2	71043801	71043801	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173535.2	-1	validated	p.T238A	0.001	187	0%	145	35.9%	0	-	benign(0)	tolerated(0.63)	neutral(0.004)	NULL
ATP6V1B1	525	genome.wustl.edu	37	2	71191593	71191593	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001692.3	+1	reviewed	p.P390H	1.000	257	0%	416	30%	6	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_ATP-synt_ab,PatternScan_ATPASE_ALPHA_BETA,superfamily_SSF52540
DYSF	8291	genome.wustl.edu	37	2	71747313	71747313	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130987.1	+1	reviewed	p.D336	0.987	322	0%	377	34.2%	0	-	-	-	-	HMMSmart_C2,superfamily_C2_CaLB,HMMPfam_FerI
TET3	200424	genome.wustl.edu	37	2	74326566	74326566	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144993.1	+1	provisional	p.A1009V	1.000	47	0%	69	31.9%	3	66.6%	possibly_damaging(0.808)	deleterious(0.04)	deleterious(0.653)	NULL
SLC4A5	57835	genome.wustl.edu	37	2	74489344	74489344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021196.3	-1	reviewed	p.R244Q	1.000	65	0%	86	30.2%	0	-	benign(0.071)	tolerated(0.51)	neutral(0.014)	HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein
LOXL3	84695	genome.wustl.edu	37	2	74761554	74761554	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032603.2	-1	reviewed	p.Y610H	1.000	395	0%	643	30.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lysyl_oxidase,PatternScan_LYSYL_OXIDASE
HK2	3099	genome.wustl.edu	37	2	75112682	75112682	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000189.4	+1	reviewed	p.V634A	1.000	282	0%	450	36.7%	79	54.4%	benign(0.029)	tolerated(0.15)	neutral(0.242)	HMMPfam_Hexokinase_1,superfamily_SSF53067
LOC442028	442028	genome.wustl.edu	37	2	95613824	95613824	+	RNA	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_017781.2	-1	model	NULL	1.000	149	0%	148	27%	0	-	-	-	-	-
PROM2	150696	genome.wustl.edu	37	2	95943217	95943217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144707.2	+1	reviewed	p.R293H	0.000	37	0%	32	18.8%	20	5%	benign(0.08)	tolerated(0.23)	neutral(0.047)	HMMPfam_Prominin
LOC400986	400986	genome.wustl.edu	37	2	96548226	96548226	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001717763.2	-1	model	p.S746	0.000	260	0%	125	23.2%	0	-	-	-	-	NULL
ASTL	431705	genome.wustl.edu	37	2	96795595	96795595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002036.3	-1	validated	p.C281Y	1.000	92	0%	87	34.5%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	"HMMPfam_Astacin,superfamily_Metalloproteases (""zincins"") catalytic domain"
FER1L5	90342	genome.wustl.edu	37	2	97357465	97357465	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113382.1	+1	provisional	p.C1020	0.001	135	0%	201	36.8%	0	-	-	-	-	NULL
CNNM4	26504	genome.wustl.edu	37	2	97463271	97463271	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020184.3	+1	reviewed	p.R523Q	1.000	50	0%	78	35.9%	41	56%	probably_damaging(0.997)	tolerated(0.09)	deleterious(0.762)	NULL
ANKRD36	375248	genome.wustl.edu	37	2	97866101	97866101	+	Splice_Site	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000289105	+1	known	e6+2	0.035	1010	0%	835	21%	0	-	-	-	-	-
TMEM131	23505	genome.wustl.edu	37	2	98375490	98375490	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015348.1	-1	validated	p.R1745*	0.993	141	0.7%	213	39.4%	22	18.1%	-	-	-	NULL
INPP4A	3631	genome.wustl.edu	37	2	99149901	99149901	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134224.1	+1	reviewed	p.S71	0.982	181	0%	244	30.7%	4	50%	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
REV1	51455	genome.wustl.edu	37	2	100029223	100029223	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016316.2	-1	reviewed	p.A714	0.955	309	0%	249	35.3%	4	75%	-	-	-	HMMPfam_IMS,superfamily_Lesion bypass DNA polymerase (Y-family) little finger domain,superfamily_DNA/RNA polymerases
IL1RL2	8808	genome.wustl.edu	37	2	102805617	102805617	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003854.2	+1	reviewed	p.I47T	0.000	251	0%	272	18%	0	-	benign(0.001)	tolerated(0.12)	neutral(0.261)	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726
SLC5A7	60482	genome.wustl.edu	37	2	108627118	108627118	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021815.2	+1	provisional	p.D515A	1.000	298	0%	263	30%	0	-	benign(0.045)	tolerated(0.5)	neutral(0.013)	NULL
RGPD8	727851	genome.wustl.edu	37	2	113147194	113147194	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000302558	-1	known	p.N1110Y	1.000	256	0%	227	11.5%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ran_BP1,HMMSmart_SM00160,superfamily_PH domain-like
PSD4	23550	genome.wustl.edu	37	2	113940360	113940360	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012455.2	+1	validated	p.S109	0.000	88	0%	96	37.5%	4	50%	-	-	-	NULL
DDX18	8886	genome.wustl.edu	37	2	118582156	118582156	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006773.3	+1	reviewed	p.T360A	1.000	308	0%	342	31.6%	21	33.3%	benign(0.028)	deleterious(0)	neutral(0.446)	HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540
EN1	2019	genome.wustl.edu	37	2	119600729	119600729	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001426.3	-1	reviewed	p.F322L	1.000	94	0%	112	30.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
MARCO	8685	genome.wustl.edu	37	2	119750723	119750723	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006770.3	+1	reviewed	p.I426F	0.745	249	0%	242	34.3%	0	-	probably_damaging(0.999)	-	-	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
CNTNAP5	129684	genome.wustl.edu	37	2	125405393	125405393	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130773.2	+1	reviewed	p.G644	0.000	78	0%	77	28.6%	0	-	-	-	-	superfamily_ConA_like_lec_gl
CNTNAP5	129684	genome.wustl.edu	37	2	125530570	125530570	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130773.2	+1	reviewed	p.Q909*	1.000	117	0%	101	36.6%	0	-	-	-	-	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
PROC	5624	genome.wustl.edu	37	2	128186044	128186044	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000312.3	+1	reviewed	p.L303R	1.000	59	0%	95	34.7%	25	56%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
MYO7B	4648	genome.wustl.edu	37	2	128335838	128335838	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080527.1	+1	provisional	p.H327R	1.000	74	0%	97	36.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
WDR33	55339	genome.wustl.edu	37	2	128467100	128467100	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018383.3	-1	reviewed	p.R1177W	0.994	212	0.5%	225	32.9%	29	48.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
POLR2D	5433	genome.wustl.edu	37	2	128610508	128610508	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004805.3	-1	reviewed	p.S82N	1.000	353	0%	368	32.9%	10	60%	benign(0.001)	tolerated(0.15)	neutral(0.241)	HMMPfam_RNA_pol_Rpb4,HMMSmart_SM00657,superfamily_HRDC-like
LOC653269	653269	genome.wustl.edu	37	2	131266547	131266547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_928585.2	-1	model	p.D88N	0.004	168	0%	209	31.1%	0	-	possibly_damaging(0.792)	tolerated(0.29)	neutral(0.326)	NULL
FAM123C	205147	genome.wustl.edu	37	2	131520031	131520031	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105193.1	+1	validated	p.Y129C	1.000	16	0%	14	57.1%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_WTX
PLEKHB2	55041	genome.wustl.edu	37	2	131883460	131883460	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100623.1	+1	validated	p.T58A	0.832	128	0%	154	28.6%	67	55.2%	benign(0)	tolerated(0.56)	neutral(0.006)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
NCKAP5	344148	genome.wustl.edu	37	2	133540023	133540023	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207363.2	-1	validated	p.A1454V	0.000	188	0%	204	33.8%	0	-	benign(0.208)	tolerated(0.12)	neutral(0.281)	NULL
NCKAP5	344148	genome.wustl.edu	37	2	133540095	133540095	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207363.2	-1	validated	p.R1430M	0.032	123	0%	105	32.4%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
ZRANB3	84083	genome.wustl.edu	37	2	136029342	136029342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032143.2	-1	provisional	p.G401D	1.000	205	0%	196	35.7%	3	33.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
LRP1B	53353	genome.wustl.edu	37	2	141004710	141004710	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000437977	-1	known	p.A655V	0.997	328	0%	188	25.5%	0	-	-	-	-	HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin
LRP1B	53353	genome.wustl.edu	37	2	141291626	141291626	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018557.2	-1	validated	p.D2576N	1.000	301	0%	207	27.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich,superfamily_SSF63825
NR4A2	4929	genome.wustl.edu	37	2	157182707	157182707	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006186.3	-1	reviewed	p.D499N	1.000	129	0%	152	32.9%	16	25%	benign(0.023)	deleterious(0.03)	neutral(0.365)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
PKP4	8502	genome.wustl.edu	37	2	159481854	159481854	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003628.3	+1	reviewed	p.R356	1.000	59	0%	74	35.1%	44	34%	-	-	-	NULL
KCNH7	90134	genome.wustl.edu	37	2	163241270	163241270	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033272.2	-1	reviewed	p.G964W	0.116	460	0%	348	34.8%	0	-	possibly_damaging(0.696)	deleterious(0.01)	deleterious(0.655)	NULL
SCN2A	6326	genome.wustl.edu	37	2	166229828	166229828	+	Silent	SNP	A	A	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040142.1	+1	reviewed	p.R1315	1.000	411	0%	438	33.6%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN1A	6323	genome.wustl.edu	37	2	166848844	166848844	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006920.4	-1	reviewed	p.L1636	0.067	375	0%	375	29.1%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
SCN9A	6335	genome.wustl.edu	37	2	167141208	167141208	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002977.3	-1	reviewed	p.I577V	1.000	213	0%	249	28.1%	0	-	benign(0.064)	tolerated(1)	neutral(0.004)	NULL
LRP2	4036	genome.wustl.edu	37	2	170112668	170112670	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	TCT	TCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004525.2	-1	reviewed	p.R906in_frame_del	0.005:0.002:0.003	-	-	-	-	-	-	-	-	-	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
SSB	6741	genome.wustl.edu	37	2	170662533	170662533	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000413002	+1	known	p.V124A	0.001	15	0%	10	40%	0	-	benign(0.009)	tolerated(0.56)	neutral(0.007)	NULL
TLK1	9874	genome.wustl.edu	37	2	171906672	171906672	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012290.4	-1	validated	p.L249F	1.000	507	0%	572	26.9%	8	62.5%	probably_damaging(0.994)	tolerated(0.07)	deleterious(0.771)	NULL
HOXD3	3232	genome.wustl.edu	37	2	177036901	177036901	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006898.4	+1	reviewed	p.H400Y	1.000	49	0%	76	27.6%	0	-	benign(0.081)	deleterious(0)	neutral(0.451)	NULL
TTN	7273	genome.wustl.edu	37	2	179410964	179410964	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133378.4	-1	reviewed	p.P29130L	0.016	226	0%	137	29.9%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179433682	179433682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.G23156D	1.000	360	0.6%	258	34.9%	1	100%	probably_damaging(1)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179435163	179435163	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133378.4	-1	reviewed	p.M22664T	1.000	168	0%	116	35.3%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179466624	179466624	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.I15861M	1.000	312	0%	186	29%	0	-	possibly_damaging(0.89)	-	-	HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179490093	179490093	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.T12251A	1.000	390	0%	276	29.7%	0	-	benign(0.099)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179611703	179611703	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133379.3	-1	reviewed	p.G5142S	1.000	313	0%	253	32.4%	0	-	benign(0)	tolerated(1)	-	NULL
TTN	7273	genome.wustl.edu	37	2	179647599	179647599	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133379.3	-1	reviewed	p.R1012*	0.993	130	0%	137	32.1%	0	-	-	-	-	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
TTN	7273	genome.wustl.edu	37	2	179650671	179650671	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133379.3	-1	reviewed	p.H758	0.001	192	0%	181	19.9%	0	-	-	-	-	NULL
CWC22	57703	genome.wustl.edu	37	2	180835484	180835484	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020943.2	-1	validated	p.F347S	1.000	314	0%	383	13.3%	6	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
FSIP2	401024	genome.wustl.edu	37	2	186672112	186672112	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000424728	+1	known	p.T6027A	0.008	75	0%	31	16.1%	0	-	probably_damaging(0.972)	tolerated(0.32)	neutral(0.438)	NULL
WDR75	84128	genome.wustl.edu	37	2	190340084	190340084	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032168.1	+1	provisional	p.E812K	1.000	123	0.8%	154	32.5%	71	45%	benign(0.36)	deleterious(0.01)	deleterious(0.520)	NULL
OSGEPL1	64172	genome.wustl.edu	37	2	190617391	190617391	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022353.2	-1	validated	p.R385H	1.000	232	0%	263	30.8%	4	100%	probably_damaging(0.982)	tolerated(0.13)	deleterious(0.679)	NULL
STAT1	6772	genome.wustl.edu	37	2	191851598	191851598	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007315.3	-1	reviewed	p.A401	0.050	382	0.5%	372	33.1%	253	40.3%	-	-	-	superfamily_p53-like transcription factors,HMMPfam_STAT_bind
SDPR	8436	genome.wustl.edu	37	2	192711286	192711286	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004657.5	-1	reviewed	p.S122	1.000	139	0%	171	29.2%	1	0%	-	-	-	NULL
SLC39A10	57181	genome.wustl.edu	37	2	196544770	196544770	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127257.1	+1	validated	p.K2E	1.000	68	0%	55	38.2%	4	50%	unknown(0)	-	-	NULL
SLC39A10	57181	genome.wustl.edu	37	2	196544912	196544912	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127257.1	+1	validated	p.S49N	0.936	188	0%	159	24.5%	1	0%	benign(0.004)	deleterious(0)	neutral(0.445)	NULL
CCDC150	284992	genome.wustl.edu	37	2	197590779	197590779	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080539.1	+1	provisional	p.E838K	0.989	204	0%	263	27.4%	1	100%	probably_damaging(0.971)	deleterious(0.03)	deleterious(0.777)	NULL
SF3B1	23451	genome.wustl.edu	37	2	198267395	198267395	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012433.2	-1	reviewed	p.S654	1.000	267	0%	217	31.3%	82	36.5%	-	-	-	superfamily_ARM repeat
SPATS2L	26010	genome.wustl.edu	37	2	201342374	201342374	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100422.1	+1	validated	p.Q433K	1.000	98	0%	93	31.2%	201	43.2%	possibly_damaging(0.946)	tolerated(0.11)	deleterious(0.661)	NULL
AOX1	316	genome.wustl.edu	37	2	201485877	201485877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001159.3	+1	reviewed	p.G637S	0.986	349	0.3%	373	34.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Ald_Xan_dh_C,superfamily_CO dehydrogenase molybdoprotein N-domain-like
CLK1	1195	genome.wustl.edu	37	2	201726178	201726178	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004071.3	-1	reviewed	p.E58G	1.000	178	0%	154	30.5%	22	45.4%	possibly_damaging(0.614)	deleterious(0.01)	deleterious(0.619)	NULL
NOP58	51602	genome.wustl.edu	37	2	203149087	203149087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015934.3	+1	provisional	p.C106Y	1.000	329	0%	355	36.6%	52	51.9%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
BMPR2	659	genome.wustl.edu	37	2	203383610	203383610	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001204.6	+1	reviewed	p.V229	1.000	279	0%	314	29.3%	6	66.6%	-	-	-	superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
PARD3B	117583	genome.wustl.edu	37	2	205829887	205829887	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152526.4	+1	validated	p.F79L	1.000	314	0%	294	26.5%	1	0%	possibly_damaging(0.823)	deleterious(0)	deleterious(0.756)	NULL
MDH1B	130752	genome.wustl.edu	37	2	207615686	207615686	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039845.1	-1	validated	p.R342C	0.688	409	0%	292	27.7%	0	-	possibly_damaging(0.588)	tolerated(0.19)	neutral(0.253)	superfamily_LDH C-terminal domain-like
PIKFYVE	200576	genome.wustl.edu	37	2	209190588	209190588	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015040.3	+1	reviewed	p.P1018H	1.000	181	0%	177	20.3%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MAP2	4133	genome.wustl.edu	37	2	210557706	210557706	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002374.3	+1	reviewed	p.T271M	0.000	98	0%	74	32.4%	0	-	benign(0.009)	deleterious(0.01)	neutral(0.406)	NULL
ACADL	33	genome.wustl.edu	37	2	211074971	211074971	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001608.3	-1	reviewed	p.I184M	0.540	458	0%	311	30.9%	12	75%	benign(0.033)	tolerated(0.19)	neutral(0.051)	HMMPfam_Acyl-CoA_dh_M,superfamily_AcylCoA_dehyd_NM
ERBB4	2066	genome.wustl.edu	37	2	212288999	212288999	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005235.2	-1	reviewed	p.F916Y	1.000	297	0%	284	37%	0	-	probably_damaging(0.997)	tolerated(0.09)	deleterious(0.762)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
SPAG16	79582	genome.wustl.edu	37	2	214794854	214794854	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024532.3	+1	validated	p.I462T	1.000	215	0%	183	16.4%	0	-	probably_damaging(0.99)	deleterious(0.03)	deleterious(0.806)	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40
ABCA12	26154	genome.wustl.edu	37	2	215821459	215821459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173076.2	-1	reviewed	p.A2054V	1.000	335	0%	303	26.1%	1	100%	benign(0)	tolerated(0.92)	-	NULL
FN1	2335	genome.wustl.edu	37	2	216248133	216248133	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_212482.1	-1	reviewed	p.S1656	0.000	377	0%	338	27.5%	42	21.4%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
SMARCAL1	50485	genome.wustl.edu	37	2	217285159	217285159	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127207.1	+1	reviewed	p.R334*	0.198	311	0.6%	389	35%	14	7.1%	-	-	-	NULL
CXCR2	3579	genome.wustl.edu	37	2	218999763	218999763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001557.3	+1	reviewed	p.R80H	0.465	208	0%	257	33.1%	0	-	benign(0.2)	tolerated(0.12)	neutral(0.280)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ZNF142	7701	genome.wustl.edu	37	2	219507796	219507796	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105537.1	-1	validated	p.T1148I	0.000	61	0%	40	27.5%	8	25%	benign(0.004)	tolerated(0.06)	neutral(0.323)	HMMSmart_SM00355
CYP27A1	1593	genome.wustl.edu	37	2	219677014	219677014	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000445971	+1	known	p.A109T	0.000	145	0%	129	24.8%	5	20%	unknown(0)	-	-	NULL
WNT6	7475	genome.wustl.edu	37	2	219736491	219736491	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006522.3	+1	reviewed	p.G196R	0.919	31	0%	65	12.3%	0	-	benign(0.059)	deleterious(0.01)	neutral(0.410)	HMMPfam_wnt,HMMSmart_WNT1
FEV	54738	genome.wustl.edu	37	2	219846735	219846735	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017521.2	-1	reviewed	p.Y124C	1.000	33	0%	91	17.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ets,HMMSmart_ETS,superfamily_SSF46785
ZFAND2B	130617	genome.wustl.edu	37	2	220074000	220074000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138802.1	+1	provisional	p.S249L	0.999	147	0%	285	31.2%	80	41.2%	-	-	-	NULL
ATG9A	79065	genome.wustl.edu	37	2	220089270	220089270	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077198.1	-1	validated	p.R275C	1.000	95	0%	124	33.9%	38	52.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_APG9
GLB1L	79411	genome.wustl.edu	37	2	220103830	220103830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024506.3	-1	provisional	p.R349Q	1.000	322	0%	451	32.8%	3	66.6%	benign(0.381)	deleterious(0.02)	deleterious(0.504)	HMMPfam_Glyco_hydro_35,superfamily_(Trans)glycosidases
SPEG	10290	genome.wustl.edu	37	2	220348642	220348642	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005876.4	+1	validated	p.V2153M	0.002	28	0%	25	48%	0	-	benign(0.195)	tolerated(0.06)	neutral(0.341)	NULL
STK11IP	114790	genome.wustl.edu	37	2	220470333	220470333	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000456909	+1	known	p.L208	0.996	198	0%	225	35.6%	7	57.1%	-	-	-	superfamily_Outer arm dynein light chain 1
DOCK10	55619	genome.wustl.edu	37	2	225637968	225637968	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014689.2	-1	validated	p.S2037Y	1.000	449	0%	589	35.1%	4	0%	possibly_damaging(0.489)	deleterious(0)	deleterious(0.607)	HMMPfam_Ded_cyto
NYAP2	57624	genome.wustl.edu	37	2	226273712	226273712	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020864.1	+1	validated	p.A39V	1.000	246	0%	213	34.7%	0	-	probably_damaging(0.979)	tolerated(0.06)	deleterious(0.744)	NULL
NYAP2	57624	genome.wustl.edu	37	2	226446951	226446951	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020864.1	+1	validated	p.Y273C	1.000	93	0%	156	35.3%	0	-	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	NULL
RHBDD1	84236	genome.wustl.edu	37	2	227729565	227729565	+	Silent	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032276.3	+1	validated	p.S52	0.982	245	0%	300	33%	9	44.4%	-	-	-	NULL
AGFG1	3267	genome.wustl.edu	37	2	228356337	228356337	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135187.1	+1	reviewed	p.L81S	0.996	149	0%	149	26.8%	22	31.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain
WDR69	164781	genome.wustl.edu	37	2	228767819	228767819	+	Silent	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178821.1	+1	provisional	p.T214	0.784	354	0%	355	13%	0	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
DNER	92737	genome.wustl.edu	37	2	230312112	230312112	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139072.3	-1	validated	p.I469T	0.782	96	0%	95	27.4%	13	30.7%	benign(0.074)	tolerated(0.07)	neutral(0.324)	superfamily_SSF57196
DGKD	8527	genome.wustl.edu	37	2	234346051	234346051	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152879.2	+1	reviewed	p.L283Q	0.005	183	0%	245	35.9%	2	0%	benign(0.002)	tolerated(0.41)	neutral(0.015)	HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain
UGT1A9	54600	genome.wustl.edu	37	2	234580709	234580709	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021027.2	+1	reviewed	p.S43	0.000	215	0%	192	19.8%	0	-	-	-	-	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
LRRFIP1	9208	genome.wustl.edu	37	2	238672544	238672544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001137552.1	+1	validated	p.E730K	0.000	71	0%	90	25.6%	80	41.2%	possibly_damaging(0.8)	deleterious(0)	deleterious(0.746)	NULL
KLHL30	377007	genome.wustl.edu	37	2	239049692	239049692	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198582.3	+1	validated	p.T81	0.467	23	0%	45	26.7%	2	0%	-	-	-	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
HDLBP	3069	genome.wustl.edu	37	2	242187476	242187476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005336.3	-1	validated	p.G558E	1.000	575	0%	695	31.2%	128	32.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF54791
HDLBP	3069	genome.wustl.edu	37	2	242189359	242189359	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005336.3	-1	validated	p.R470H	1.000	222	0%	283	31.4%	155	49.6%	benign(0.149)	tolerated(0.57)	neutral(0.019)	HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF54791
CNTN4	152330	genome.wustl.edu	37	3	2613197	2613197	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175607.1	+1	reviewed	p.P4A	1.000	381	0%	393	31.3%	1	0%	benign(0.069)	tolerated(0.27)	neutral(0.038)	NULL
LHFPL4	375323	genome.wustl.edu	37	3	9594105	9594105	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198560.2	-1	reviewed	p.I87V	1.000	61	0%	71	33.8%	0	-	benign(0.045)	tolerated(0.2)	neutral(0.052)	HMMPfam_L_HGMIC_fpl
BRPF1	7862	genome.wustl.edu	37	3	9780775	9780775	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003694.1	+1	reviewed	p.R231H	1.000	209	0%	332	19.9%	8	25%	possibly_damaging(0.936)	deleterious(0.01)	deleterious(0.787)	HMMPfam_EPL1
IL17RC	84818	genome.wustl.edu	37	3	9969874	9969874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153461.2	+1	reviewed	p.V354I	0.000	111	0%	128	31.2%	28	46.4%	benign(0.023)	tolerated(0.34)	neutral(0.024)	NULL
IQSEC1	9922	genome.wustl.edu	37	3	12954973	12954973	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000450726	-1	known	p.R772W	0.763	363	0%	525	29.7%	4	25%	-	-	-	HMMSmart_SM00233,superfamily_PH domain-like
FBLN2	2199	genome.wustl.edu	37	3	13649613	13649613	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004019.1	+1	reviewed	p.A453V	1.000	176	0%	212	27.4%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ANATO,HMMSmart_SM00104,PatternScan_ANAPHYLATOXIN_1
WNT7A	7476	genome.wustl.edu	37	3	13860767	13860767	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004625.3	-1	reviewed	p.R242C	0.995	108	0%	135	30.4%	157	48.4%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_wnt,HMMSmart_SM00097
SLC6A6	6533	genome.wustl.edu	37	3	14508027	14508027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134367.1	+1	validated	p.V246I	1.000	70	0%	93	12.9%	14	0%	benign(0.022)	deleterious(0)	neutral(0.446)	HMMPfam_SNF
HACL1	26061	genome.wustl.edu	37	3	15624464	15624464	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012260.2	-1	validated	p.S196N	0.965	191	0%	148	37.8%	14	28.5%	benign(0.237)	tolerated(0.35)	neutral(0.044)	superfamily_SSF52467
SLC4A7	9497	genome.wustl.edu	37	3	27436171	27436171	+	Silent	SNP	T	T	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003615.3	-1	validated	p.A976	0.992	150	0%	177	29.4%	4	50%	-	-	-	HMMPfam_HCO3_cotransp
FBXL2	25827	genome.wustl.edu	37	3	33427035	33427035	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012157.3	+1	reviewed	p.V403I	1.000	152	0%	213	37.1%	2	0%	possibly_damaging(0.592)	deleterious(0.03)	deleterious(0.569)	superfamily_SSF52047
CLASP2	23122	genome.wustl.edu	37	3	33668559	33668559	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015097.1	-1	validated	p.R319Q	1.000	214	0%	150	32.7%	2	0%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	superfamily_ARM repeat
EPM2AIP1	9852	genome.wustl.edu	37	3	37033507	37033507	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014805.3	-1	reviewed	p.L354	0.469	139	0%	130	34.6%	2	50%	-	-	-	NULL
SLC22A13	9390	genome.wustl.edu	37	3	38316510	38316510	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004256.3	+1	reviewed	p.T223M	0.600	73	0%	88	21.6%	0	-	probably_damaging(0.993)	tolerated(0.2)	deleterious(0.499)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
TTC21A	199223	genome.wustl.edu	37	3	39150695	39150695	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105513.2	+1	validated	p.V49	0.014	203	0%	251	28.7%	0	-	-	-	-	superfamily_TPR-like
ZNF852	285346	genome.wustl.edu	37	3	44542087	44542087	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000436261	-1	known	p.Q61R	0.066	83	0%	55	18.2%	0	-	benign(0.246)	tolerated(0.2)	neutral(0.074)	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
FYCO1	79443	genome.wustl.edu	37	3	45972590	45972590	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000433878	-1	known	p.P197L	0.001	103	0%	119	37.8%	5	80%	-	-	-	superfamily_Supernatant protein factor (SPF) C-terminal domain
CCR2	729230	genome.wustl.edu	37	3	46399421	46399421	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001123041.2	+1	validated	p.T135S	1.000	566	0%	613	32.5%	3	0%	benign(0.356)	tolerated(0.1)	neutral(0.399)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
ALS2CL	259173	genome.wustl.edu	37	3	46713390	46713390	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_147129.2	-1	validated	p.V890M	1.000	90	0%	117	29.1%	104	50.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_VPS9,superfamily_VPS9 domain (Pfam 02204)
PRSS50	29122	genome.wustl.edu	37	3	46758961	46758961	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013270.4	-1	validated	p.F91L	0.000	308	0%	510	31.4%	0	-	benign(0.001)	-	-	NULL
PRSS50	29122	genome.wustl.edu	37	3	46759287	46759287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013270.4	-1	validated	p.R10C	0.000	10	0%	19	36.8%	0	-	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
PRSS42	339906	genome.wustl.edu	37	3	46875094	46875094	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182702.1	-1	provisional	p.S96N	1.000	45	0%	54	16.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
NBEAL2	23218	genome.wustl.edu	37	3	47037427	47037427	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000416683	+1	known	p.A151V	0.693	175	0%	196	33.7%	11	18.1%	-	-	-	NULL
NBEAL2	23218	genome.wustl.edu	37	3	47039652	47039652	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000416683	+1	known	p.Y490C	0.991	71	0%	101	34.7%	30	40%	-	-	-	NULL
SETD2	29072	genome.wustl.edu	37	3	47103716	47103716	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014159.6	-1	reviewed	p.R2077Q	1.000	741	0%	838	32.2%	19	42.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SETD2	29072	genome.wustl.edu	37	3	47155402	47155402	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014159.6	-1	reviewed	p.K1560R	1.000	359	0%	412	28.9%	10	30%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
PTPN23	25930	genome.wustl.edu	37	3	47454464	47454464	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015466.2	+1	validated	p.A1567V	0.912	72	0%	87	24.1%	60	41.6%	unknown(0)	tolerated(0.79)	-	NULL
SMARCC1	6599	genome.wustl.edu	37	3	47719724	47719724	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003074.3	-1	validated	p.R512Q	1.000	315	0%	514	35%	23	39.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SWIRM
DHX30	22907	genome.wustl.edu	37	3	47882560	47882560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138615.2	+1	reviewed	p.R187Q	0.984	96	0%	140	30%	23	60.8%	benign(0.392)	deleterious(0)	deleterious(0.570)	NULL
DHX30	22907	genome.wustl.edu	37	3	47889960	47889960	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138615.2	+1	reviewed	p.A832V	1.000	91	0%	91	26.4%	67	43.2%	benign(0.005)	tolerated(0.46)	neutral(0.012)	superfamily_P-loop containing nucleoside triphosphate hydrolases
COL7A1	1294	genome.wustl.edu	37	3	48630009	48630009	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000094.3	-1	reviewed	p.R324W	0.584	33	0%	44	34.1%	1	0%	unknown(0)	deleterious(0.01)	-	superfamily_Fibronectin type III
CELSR3	1951	genome.wustl.edu	37	3	48698402	48698402	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001407.2	-1	reviewed	p.E556K	1.000	44	0%	30	30%	0	-	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	HMMPfam_Cadherin,superfamily_Cadherin-like
LAMB2	3913	genome.wustl.edu	37	3	49169780	49169780	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002292.3	-1	reviewed	p.P103Q	1.000	267	0%	428	31.8%	20	40%	benign(0.372)	tolerated(0.39)	neutral(0.135)	HMMPfam_Laminin_N,HMMSmart_LamNT
BSN	8927	genome.wustl.edu	37	3	49680204	49680204	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003458.3	+1	reviewed	p.P379	1.000	17	0%	19	31.6%	0	-	-	-	-	NULL
SEMA3F	6405	genome.wustl.edu	37	3	50220903	50220903	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004186.3	+1	validated	p.R380H	1.000	105	0%	125	25.6%	37	35.1%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
GNAI2	2771	genome.wustl.edu	37	3	50290564	50290564	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002070.2	+1	reviewed	p.Q138*	1.000	92	0%	115	27%	170	2.9%	-	-	-	HMMPfam_G-alpha,superfamily_Transducin (alpha subunit) insertion domain,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
GRM2	2912	genome.wustl.edu	37	3	51746830	51746830	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000839.3	+1	reviewed	p.R264	0.168	57	0%	32	37.5%	2	50%	-	-	-	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
DNAH1	25981	genome.wustl.edu	37	3	52387636	52387636	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015512.4	+1	validated	p.Y1156C	0.985	20	0%	28	35.7%	1	0%	possibly_damaging(0.45)	deleterious(0.01)	deleterious(0.553)	HMMPfam_DHC_N2
DNAH1	25981	genome.wustl.edu	37	3	52395775	52395775	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015512.4	+1	validated	p.Q1658R	1.000	44	0%	54	38.9%	1	0%	benign(0.034)	tolerated(0.98)	neutral(0.002)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH1	25981	genome.wustl.edu	37	3	52413964	52413964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015512.4	+1	validated	p.R2474H	1.000	97	0%	132	32.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
PHF7	51533	genome.wustl.edu	37	3	52455676	52455676	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016483.4	+1	reviewed	p.T196A	0.996	318	0%	352	18.2%	0	-	benign(0.006)	tolerated(0.21)	neutral(0.044)	HMMSmart_RING
NISCH	11188	genome.wustl.edu	37	3	52512259	52512259	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007184.3	+1	validated	p.S378	0.009	173	0%	210	29.5%	16	56.2%	-	-	-	HMMSmart_SM00365,superfamily_Outer arm dynein light chain 1
RFT1	91869	genome.wustl.edu	37	3	53159972	53159972	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052859.3	-1	reviewed	p.F34	1.000	190	0%	349	29.2%	10	100%	-	-	-	HMMPfam_Rft-1
RFT1	91869	genome.wustl.edu	37	3	53164352	53164352	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052859.3	-1	reviewed	e1+2	1.000	13	0%	14	28.6%	1	100%	-	-	-	-
DCP1A	55802	genome.wustl.edu	37	3	53338227	53338227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018403.5	-1	reviewed	p.P202S	0.020	284	0%	324	34%	6	50%	-	-	-	NULL
CACNA2D3	55799	genome.wustl.edu	37	3	54157596	54157596	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018398.2	+1	reviewed	p.Y60C	1.000	335	0.3%	458	33%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
IL17RD	54756	genome.wustl.edu	37	3	57131753	57131753	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017563.3	-1	validated	p.R660W	0.659	39	0%	62	32.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FLNB	2317	genome.wustl.edu	37	3	58089740	58089740	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001457.3	+1	reviewed	p.F513S	0.998	158	0%	163	29.4%	6	66.6%	possibly_damaging(0.83)	tolerated(0.09)	deleterious(0.612)	HMMSmart_IG_FLMN,superfamily_Ig_E-set,HMMPfam_Filamin
ADAMTS9	56999	genome.wustl.edu	37	3	64580081	64580081	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000481060	-1	known	p.E459G	0.519	160	0%	185	27%	39	46.1%	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
C3orf64	285203	genome.wustl.edu	37	3	69027534	69027534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173654.1	-1	provisional	p.V379I	0.009	280	0%	253	31.6%	4	50%	benign(0.001)	tolerated(0.29)	neutral(0.029)	NULL
MITF	4286	genome.wustl.edu	37	3	69928357	69928357	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198159.2	+1	reviewed	p.L59	1.000	81	0%	107	38.3%	6	50%	-	-	-	NULL
MIR1284	100302112	genome.wustl.edu	37	3	71591157	71591157	+	RNA	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000408337	-1	known	NULL	1.000	100	0%	96	34.4%	0	-	-	-	-	-
SHQ1	55164	genome.wustl.edu	37	3	72873623	72873623	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018130.2	-1	validated	p.M227V	0.446	384	0%	345	30.1%	6	66.6%	benign(0)	tolerated(1)	-	NULL
PDZRN3	23024	genome.wustl.edu	37	3	73433448	73433448	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015009.1	-1	provisional	p.A757T	1.000	71	0%	68	41.2%	1	0%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	NULL
CNTN3	5067	genome.wustl.edu	37	3	74349084	74349084	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020872.1	-1	validated	p.E701K	0.948	132	0%	139	33.8%	0	-	benign(0.002)	tolerated(0.92)	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
C3orf38	285237	genome.wustl.edu	37	3	88205567	88205567	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000318887	+1	known	p.R258C	1.000	374	0%	424	33.3%	15	46.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_NTF2-like
GPR15	2838	genome.wustl.edu	37	3	98251157	98251157	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005290.1	+1	provisional	p.A94T	0.413	175	0%	183	27.3%	0	-	possibly_damaging(0.8)	deleterious(0.02)	deleterious(0.684)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
DCBLD2	131566	genome.wustl.edu	37	3	98530145	98530145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080927.3	-1	validated	p.T490M	0.840	459	0%	410	31.5%	19	42.1%	possibly_damaging(0.742)	deleterious(0.02)	deleterious(0.655)	NULL
NFKBIZ	64332	genome.wustl.edu	37	3	101572529	101572529	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031419.2	+1	reviewed	p.G387R	0.001	85	0%	88	27.3%	40	47.5%	benign(0.057)	tolerated(0.07)	neutral(0.323)	NULL
CBLB	868	genome.wustl.edu	37	3	105452901	105452901	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170662.3	-1	validated	p.I385	0.968	240	0%	258	36.4%	4	75%	-	-	-	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box
BBX	56987	genome.wustl.edu	37	3	107466827	107466827	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142568.1	+1	validated	p.S256P	0.997	358	0%	309	30.7%	16	62.5%	possibly_damaging(0.918)	deleterious(0)	deleterious(0.813)	HMMPfam_DUF2028
KIAA1524	57650	genome.wustl.edu	37	3	108278633	108278633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020890.2	-1	validated	p.R662C	1.000	221	0%	180	26.7%	11	63.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIAA1524	57650	genome.wustl.edu	37	3	108288440	108288440	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020890.2	-1	validated	p.L303	1.000	128	0%	122	26.2%	6	66.6%	-	-	-	superfamily_ARM repeat
TMPRSS7	344805	genome.wustl.edu	37	3	111793213	111793213	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042575.2	+1	validated	p.C453*	1.000	428	0%	514	34%	0	-	-	-	-	HMMSmart_SM00192,superfamily_LDL receptor-like module
SPICE1	152185	genome.wustl.edu	37	3	113187631	113187631	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000467618	-1	known	p.S101N	1.000	366	0%	385	29.6%	5	40%	-	-	-	NULL
ZNF80	7634	genome.wustl.edu	37	3	113955636	113955636	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007136.3	-1	validated	p.M96V	0.017	139	0%	223	32.7%	0	-	benign(0)	deleterious(0.05)	neutral(0.345)	HMMSmart_ZnF_C2H2,superfamily_SSF57667
GPR156	165829	genome.wustl.edu	37	3	119886053	119886053	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153002.2	-1	validated	p.R757	0.998	105	0%	91	30.8%	0	-	-	-	-	NULL
GPR156	165829	genome.wustl.edu	37	3	119886387	119886387	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153002.2	-1	validated	p.A646D	0.001	56	0%	86	30.2%	0	-	benign(0)	tolerated(1)	-	NULL
HCLS1	3059	genome.wustl.edu	37	3	121350735	121350735	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005335.4	-1	validated	p.H473	0.997	198	0%	225	27.6%	39	0%	-	-	-	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
ILDR1	286676	genome.wustl.edu	37	3	121725912	121725912	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175924.2	-1	provisional	p.Q52R	1.000	171	0%	342	28.1%	13	23%	probably_damaging(0.962)	tolerated(0.07)	deleterious(0.724)	HMMSmart_IG,superfamily_SSF48726
SNX4	8723	genome.wustl.edu	37	3	125170247	125170247	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003794.2	-1	reviewed	p.A403T	1.000	400	0%	399	28.1%	27	40.7%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
SLC41A3	54946	genome.wustl.edu	37	3	125775389	125775389	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008487.1	-1	validated	p.V3I	1.000	56	0%	55	29.1%	0	-	benign(0.332)	tolerated(0.2)	neutral(0.153)	NULL
UROC1	131669	genome.wustl.edu	37	3	126216967	126216967	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144639.2	-1	reviewed	p.S455	0.021	120	0%	141	31.9%	0	-	-	-	-	HMMPfam_Urocanase,superfamily_Urocanase
PLXNA1	5361	genome.wustl.edu	37	3	126736307	126736307	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032242.3	+1	validated	p.A1083T	0.995	57	0%	49	32.7%	17	41.1%	possibly_damaging(0.915)	tolerated(0.22)	neutral(0.408)	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
MCM2	4171	genome.wustl.edu	37	3	127339993	127339993	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000491422	+1	known	p.S774N	1.000	131	0%	205	33.2%	49	55.1%	-	-	-	NULL
H1FOO	132243	genome.wustl.edu	37	3	129270004	129270004	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153833.1	+1	reviewed	p.A288T	0.120	95	0%	102	30.4%	0	-	benign(0.008)	tolerated(0.82)	neutral(0.001)	NULL
COL6A5	256076	genome.wustl.edu	37	3	130116720	130116720	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153264.5	+1	validated	p.R1288W	0.004	292	0.7%	299	21.4%	0	-	possibly_damaging(0.693)	-	-	superfamily_SSF53300
NPHP3	27031	genome.wustl.edu	37	3	132400859	132400859	+	Silent	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153240.3	-1	reviewed	p.S1296	0.298	477	0%	455	31.4%	11	36.3%	-	-	-	NULL
RYK	6259	genome.wustl.edu	37	3	133930364	133930364	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005861.2	-1	reviewed	p.T147M	1.000	285	0%	250	37.6%	19	78.9%	possibly_damaging(0.836)	tolerated(0.12)	deleterious(0.580)	NULL
DZIP1L	199221	genome.wustl.edu	37	3	137783419	137783419	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000486487	-1	known	p.L101F	0.004	106	0%	108	29.6%	0	-	-	-	-	NULL
PRR23C	389152	genome.wustl.edu	37	3	138763069	138763069	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134657.1	-1	validated	p.G132R	0.000	49	0%	104	42.3%	0	-	benign(0.002)	tolerated(0.6)	neutral(0.004)	HMMPfam_DUF2476
CLSTN2	64084	genome.wustl.edu	37	3	140122484	140122484	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022131.2	+1	validated	p.A82	0.032	139	0%	154	29.9%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
TRPC1	7220	genome.wustl.edu	37	3	142522825	142522825	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003304.4	+1	validated	p.I554	0.996	315	0%	309	35.9%	0	-	-	-	-	HMMPfam_Ion_trans
PLSCR5	389158	genome.wustl.edu	37	3	146318172	146318172	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085420.1	-1	validated	p.S31Y	0.010	235	0%	188	31.4%	0	-	possibly_damaging(0.453)	tolerated(1)	neutral(0.148)	NULL
ZIC1	7545	genome.wustl.edu	37	3	147128672	147128672	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003412.3	+1	reviewed	p.V258A	1.000	161	0%	147	24.5%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_ZnF_C2H2
CPB1	1360	genome.wustl.edu	37	3	148559629	148559629	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001871.2	+1	reviewed	p.N165S	0.831	350	0%	388	28.6%	0	-	benign(0.048)	tolerated(0.65)	neutral(0.006)	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
MED12L	116931	genome.wustl.edu	37	3	151097958	151097958	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053002.4	+1	reviewed	p.G1477	1.000	294	0%	321	27.4%	0	-	-	-	-	NULL
IGSF10	285313	genome.wustl.edu	37	3	151155234	151155234	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178822.4	-1	validated	p.I2372T	0.992	360	0%	355	26.2%	0	-	benign(0.061)	tolerated(0.33)	neutral(0.028)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
ARHGEF26	26084	genome.wustl.edu	37	3	153912488	153912488	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015595.3	+1	validated	p.A609V	1.000	251	0%	252	32.1%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
DHX36	170506	genome.wustl.edu	37	3	153995424	153995424	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020865.2	-1	validated	p.N884S	1.000	369	0%	366	27.6%	28	42.8%	benign(0.005)	tolerated(0.2)	neutral(0.049)	HMMPfam_DUF1605
TNIK	23043	genome.wustl.edu	37	3	170846597	170846597	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015028.2	-1	validated	p.S560C	1.000	181	0%	254	33.9%	0	-	probably_damaging(0.997)	tolerated(0.1)	deleterious(0.752)	NULL
PIK3CA	5290	genome.wustl.edu	37	3	178927980	178927980	+	Missense_Mutation	SNP	T	T	C	rs121913272		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.C420R	1.000	179	0%	154	34.4%	3	33.3%	probably_damaging(0.992)	tolerated(0.24)	deleterious(0.485)	HMMSmart_C2,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,superfamily_C2_CaLB
GNB4	59345	genome.wustl.edu	37	3	179132797	179132797	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021629.3	-1	reviewed	p.T102	0.987	148	0%	178	32%	4	25%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
USP13	8975	genome.wustl.edu	37	3	179448033	179448033	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003940.2	+1	validated	p.D382V	1.000	358	0%	391	31.2%	1	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_UCH,superfamily_SSF54001
CCDC39	339829	genome.wustl.edu	37	3	180334654	180334654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181426.1	-1	validated	p.T789M	0.608	618	0%	446	29.1%	0	-	probably_damaging(0.988)	tolerated(0.09)	deleterious(0.734)	NULL
ABCC5	10057	genome.wustl.edu	37	3	183695400	183695400	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005688.2	-1	reviewed	p.V437L	1.000	137	0%	238	30.7%	2	0%	benign(0.067)	tolerated(0.38)	neutral(0.022)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
PSMD2	5708	genome.wustl.edu	37	3	184019696	184019696	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002808.3	+1	reviewed	p.R181W	1.000	79	1.3%	116	38.8%	114	53.5%	probably_damaging(0.972)	deleterious(0.02)	deleterious(0.797)	superfamily_ARM-type_fold
VPS8	23355	genome.wustl.edu	37	3	184646252	184646252	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009921.2	+1	validated	p.L882S	1.000	433	0%	404	35.6%	6	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM-type_fold
MASP1	5648	genome.wustl.edu	37	3	186971079	186971079	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139125.3	-1	reviewed	p.G257R	1.000	200	0%	223	43%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CUB,HMMSmart_CUB,superfamily_CUB
LRRC15	131578	genome.wustl.edu	37	3	194081688	194081688	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135057.2	-1	validated	p.C35R	1.000	46	0%	31	25.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_L domain-like
TFRC	7037	genome.wustl.edu	37	3	195789788	195789788	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128148.1	-1	validated	p.S447	1.000	179	0%	209	19.1%	37	27%	-	-	-	superfamily_Zn-dependent exopeptidases
PAK2	5062	genome.wustl.edu	37	3	196547384	196547384	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002577.4	+1	reviewed	p.M432I	1.000	319	0%	380	14.5%	44	9%	possibly_damaging(0.735)	deleterious(0)	deleterious(0.713)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
KIAA0226	9711	genome.wustl.edu	37	3	197420634	197420634	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145642.2	-1	validated	p.L535F	0.622	206	0%	277	30.3%	7	42.8%	benign(0)	tolerated(0.31)	neutral(0.027)	NULL
PCGF3	10336	genome.wustl.edu	37	4	755194	755194	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006315.4	+1	reviewed	p.S197F	0.998	126	0%	145	35.2%	36	38.8%	possibly_damaging(0.932)	deleterious(0.03)	deleterious(0.743)	NULL
MAEA	10296	genome.wustl.edu	37	4	1283757	1283757	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017405.1	+1	reviewed	p.Y19C	1.000	23	0%	43	32.6%	46	28.2%	probably_damaging(0.967)	deleterious(0.01)	deleterious(0.815)	NULL
OTOP1	133060	genome.wustl.edu	37	4	4190531	4190531	+	Nonstop_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177998.1	-1	provisional	p.*613W	0.069	88	0%	85	11.8%	0	-	-	-	-	NULL
SORCS2	57537	genome.wustl.edu	37	4	7640108	7640108	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000507866	+1	known	p.R201C	1.000	238	0%	285	35.8%	0	-	-	-	-	HMMSmart_SM00602,superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase
ABLIM2	84448	genome.wustl.edu	37	4	8029564	8029564	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130083.1	-1	validated	p.T397A	1.000	88	0%	143	30.8%	0	-	benign(0)	tolerated(0.35)	neutral(0.021)	NULL
SH3TC1	54436	genome.wustl.edu	37	4	8242521	8242521	+	Missense_Mutation	SNP	G	G	A	rs146085653	by1000genomes	TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018986.3	+1	validated	p.A1284T	1.000	73	0%	118	31.4%	68	41.1%	probably_damaging(0.999)	tolerated(0.13)	deleterious(0.743)	superfamily_TPR-like
ACOX3	8310	genome.wustl.edu	37	4	8416071	8416071	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003501.2	-1	validated	p.G164D	1.000	266	0%	363	29.5%	16	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Acyl-CoA_dh_M,superfamily_Acyl-CoA dehydrogenase NM domain-like
CPEB2	132864	genome.wustl.edu	37	4	15060051	15060051	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182485.2	+1	reviewed	p.A378V	1.000	452	0%	379	10.3%	2	0%	benign(0.24)	tolerated(0.35)	neutral(0.044)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
NCAPG	64151	genome.wustl.edu	37	4	17813896	17813896	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022346.3	+1	validated	p.V55A	1.000	470	0%	657	30.9%	7	57.1%	benign(0)	tolerated(0.58)	neutral(0.005)	NULL
LCORL	254251	genome.wustl.edu	37	4	17847524	17847524	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153686.7	-1	reviewed	p.G259	1.000	273	0%	215	25.1%	3	33.3%	benign(0)	deleterious(0.02)	neutral(0.383)	NULL
LCORL	254251	genome.wustl.edu	37	4	17885915	17885915	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000382226	-1	known	p.K413E	1.000	343	0%	230	32.2%	2	50%	possibly_damaging(0.792)	deleterious(0)	deleterious(0.742)	NULL
SLIT2	9353	genome.wustl.edu	37	4	20555481	20555481	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004787.1	+1	provisional	p.D872G	1.000	359	0%	314	12.4%	0	-	benign(0.007)	deleterious(0.04)	neutral(0.349)	HMMSmart_SM00082
SLC34A2	10568	genome.wustl.edu	37	4	25664152	25664152	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006424.2	+1	reviewed	p.A10	0.992	69	0%	63	27%	40	52.5%	-	-	-	NULL
ARAP2	116984	genome.wustl.edu	37	4	36195265	36195265	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015230.2	-1	reviewed	p.R498C	1.000	301	0%	236	32.2%	4	75%	benign(0.234)	tolerated(0.12)	neutral(0.284)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
KIAA1239	57495	genome.wustl.edu	37	4	37448157	37448157	+	Missense_Mutation	SNP	G	G	A	rs182757268	by1000genomes	TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144990.1	+1	validated	p.R1516H	1.000	178	0%	144	32.6%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_WD40_like
C4orf19	55286	genome.wustl.edu	37	4	37592019	37592019	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001104629.1	+1	validated	p.S114	0.000	32	0%	34	38.2%	37	27%	-	-	-	NULL
TBC1D1	23216	genome.wustl.edu	37	4	38117333	38117333	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015173.2	+1	validated	p.R854*	1.000	237	0%	207	30%	66	10.6%	-	-	-	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
RFC1	5981	genome.wustl.edu	37	4	39344023	39344023	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002913.3	-1	reviewed	p.V91	0.049	789	0%	741	29.8%	1	100%	-	-	-	NULL
LIAS	11019	genome.wustl.edu	37	4	39472860	39472860	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006859.2	+1	reviewed	p.L296	0.507	315	0%	454	27.3%	11	36.3%	-	-	-	HMMSmart_Elp3,HMMPfam_Radical_SAM,superfamily_SSF102114
BEND4	389206	genome.wustl.edu	37	4	42119580	42119580	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207406.3	-1	validated	p.Q520H	1.000	149	0%	143	34.3%	0	-	possibly_damaging(0.677)	deleterious(0)	deleterious(0.685)	NULL
GNPDA2	132789	genome.wustl.edu	37	4	44724218	44724218	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138335.1	-1	provisional	p.L3F	1.000	176	0%	219	32.9%	3	0%	possibly_damaging(0.523)	deleterious(0.01)	deleterious(0.582)	superfamily_NagB/RpiA/CoA transferase-like
GABRG1	2565	genome.wustl.edu	37	4	46053439	46053439	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173536.3	-1	reviewed	e8+2	1.000	243	0%	150	37.3%	0	-	-	-	-	-
FRYL	285527	genome.wustl.edu	37	4	48517068	48517068	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015030.1	-1	validated	p.E2638	0.999	370	0%	317	30.6%	9	33.3%	-	-	-	superfamily_ARM repeat
FRYL	285527	genome.wustl.edu	37	4	48542817	48542817	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015030.1	-1	validated	p.R1950*	1.000	276	0%	238	37.4%	1	100%	-	-	-	superfamily_ARM repeat
LRRC66	339977	genome.wustl.edu	37	4	52860784	52860784	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024611.1	-1	provisional	p.L802M	0.000	119	0%	100	39%	0	-	benign(0.004)	tolerated(0.15)	neutral(0.241)	NULL
LNX1	84708	genome.wustl.edu	37	4	54344841	54344841	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001126328.1	-1	reviewed	p.L518	0.974	501	0.6%	480	37.3%	5	100%	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
CLOCK	9575	genome.wustl.edu	37	4	56329897	56329897	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004898.2	-1	reviewed	p.T172A	1.000	184	0%	161	32.3%	2	50%	benign(0.023)	deleterious(0.03)	neutral(0.365)	HMMSmart_SM00091,HMMPfam_PAS,superfamily_PYP-like sensor domain (PAS domain)
AASDH	132949	genome.wustl.edu	37	4	57216101	57216101	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181806.2	-1	validated	p.S606T	0.000	110	0%	66	28.8%	5	20%	benign(0.002)	tolerated(0.68)	neutral(0.002)	HMMPfam_PP-binding,superfamily_ACP-like
LPHN3	23284	genome.wustl.edu	37	4	62849268	62849268	+	Silent	SNP	C	C	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000502815	+1	known	p.H451D	1.000	565	0%	564	31%	0	-	-	-	-	HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like
TECRL	253017	genome.wustl.edu	37	4	65147244	65147244	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010874.4	-1	validated	p.N289S	1.000	229	0%	185	23.2%	0	-	probably_damaging(0.998)	deleterious(0.05)	deleterious(0.820)	NULL
EPHA5	2044	genome.wustl.edu	37	4	66233089	66233089	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004439.5	-1	reviewed	p.F637S	1.000	340	0%	271	35.4%	0	-	benign(0.001)	tolerated(0.08)	neutral(0.300)	NULL
CENPC1	1060	genome.wustl.edu	37	4	68385046	68385046	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001812.2	-1	reviewed	p.V169A	0.000	383	0%	313	31.6%	6	16.6%	benign(0.156)	tolerated(0.51)	neutral(0.023)	NULL
SLC4A4	8671	genome.wustl.edu	37	4	72338842	72338842	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000512686	+1	known	p.L642F	0.005	44	0%	17	23.5%	0	-	unknown(0)	deleterious(0)	-	NULL
ADAMTS3	9508	genome.wustl.edu	37	4	73149207	73149207	+	Silent	SNP	A	A	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014243.1	-1	reviewed	p.S1088	0.788	189	0%	183	36.1%	0	-	-	-	-	NULL
PF4	5196	genome.wustl.edu	37	4	74846960	74846960	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002619.2	-1	validated	p.P89	0.000	357	0%	470	30.4%	2	100%	-	-	-	HMMPfam_IL8,HMMSmart_SCY,superfamily_Chemokine_IL8
BTC	685	genome.wustl.edu	37	4	75695344	75695344	+	Silent	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000512743	-1	known	p.W8L	0.995	178	0%	181	37.6%	2	50%	-	-	-	NULL
PPEF2	5470	genome.wustl.edu	37	4	76813014	76813014	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006239.2	-1	reviewed	p.D58G	1.000	43	0%	71	18.3%	0	-	probably_damaging(0.998)	tolerated(0.15)	deleterious(0.716)	NULL
FRAS1	80144	genome.wustl.edu	37	4	79240123	79240123	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025074.6	+1	reviewed	p.S707I	0.990	237	0%	215	31.2%	1	100%	benign(0.005)	deleterious(0.03)	neutral(0.364)	superfamily_Growth factor receptor domain
FRAS1	80144	genome.wustl.edu	37	4	79301122	79301122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025074.6	+1	reviewed	p.R1178C	0.959	160	0%	163	34.4%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
BMP3	651	genome.wustl.edu	37	4	81967317	81967317	+	Missense_Mutation	SNP	G	G	A	rs140292630	by1000genomes	TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001201.2	+1	reviewed	p.A248T	1.000	145	0.7%	102	30.4%	0	-	probably_damaging(0.956)	deleterious(0.03)	deleterious(0.764)	NULL
HSD17B11	51170	genome.wustl.edu	37	4	88295926	88295926	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016245.3	-1	validated	p.Y125*	0.928	339	0%	413	27.6%	9	22.2%	-	-	-	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
HERC5	51191	genome.wustl.edu	37	4	89408237	89408237	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016323.2	+1	reviewed	p.V623	0.000	332	0%	336	36%	14	42.8%	-	-	-	NULL
HERC5	51191	genome.wustl.edu	37	4	89425453	89425453	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016323.2	+1	reviewed	p.R885W	1.000	232	0%	209	28.7%	44	54.5%	possibly_damaging(0.937)	tolerated(0.19)	neutral(0.432)	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
ATOH1	474	genome.wustl.edu	37	4	94750484	94750484	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005172.1	+1	reviewed	p.V136A	0.008	36	0%	33	27.3%	0	-	benign(0.003)	tolerated(1)	-	NULL
PDHA2	5161	genome.wustl.edu	37	4	96761738	96761738	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005390.4	+1	validated	p.G146E	0.994	161	0%	205	24.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_E1_dh,superfamily_SSF52518
TSPAN5	10098	genome.wustl.edu	37	4	99397577	99397577	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005723.3	-1	reviewed	p.A204V	1.000	239	0%	310	31%	2	50%	benign(0)	tolerated(1)	-	superfamily_Tetraspanin,HMMPfam_Tetraspannin
METAP1	23173	genome.wustl.edu	37	4	99916939	99916939	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015143.2	+1	validated	p.D12G	0.984	14	0%	34	26.5%	12	41.6%	benign(0.072)	tolerated(0.17)	neutral(0.064)	NULL
ADH4	127	genome.wustl.edu	37	4	100063907	100063907	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000670.3	-1	reviewed	p.A15T	0.951	87	0%	73	34.2%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	superfamily_GroES-like
DNAJB14	79982	genome.wustl.edu	37	4	100826815	100826815	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031723.2	-1	validated	p.L261I	1.000	251	0%	244	43.9%	6	66.6%	benign(0.016)	tolerated(0.89)	neutral(0.001)	NULL
AGXT2L1	64850	genome.wustl.edu	37	4	109669187	109669187	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031279.3	-1	validated	p.A352	0.901	578	0%	608	10%	0	-	-	-	-	HMMPfam_Aminotran_3,superfamily_PLP-dependent transferases
CASP6	839	genome.wustl.edu	37	4	110618918	110618918	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001226.3	-1	reviewed	p.M30I	0.000	521	0%	547	32.2%	32	50%	benign(0)	tolerated(0.27)	neutral(0.034)	NULL
C4orf21	55345	genome.wustl.edu	37	4	113540203	113540203	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000505019	-1	known	p.S332Y	0.855	185	0%	194	31.4%	0	-	probably_damaging(0.99)	tolerated(0.09)	deleterious(0.738)	NULL
PRSS12	8492	genome.wustl.edu	37	4	119259455	119259455	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003619.2	-1	reviewed	p.R173C	0.072	282	0%	305	29.8%	0	-	possibly_damaging(0.862)	tolerated(0.05)	deleterious(0.678)	HMMPfam_SRCR,superfamily_Kringle-like,HMMSmart_SM00202,superfamily_SRCR-like
SEC24D	9871	genome.wustl.edu	37	4	119649787	119649787	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014822.2	-1	reviewed	p.G963R	1.000	583	0%	441	30.8%	20	40%	possibly_damaging(0.591)	deleterious(0)	deleterious(0.648)	HMMPfam_Gelsolin,superfamily_C-terminal gelsolin-like domain of Sec23/24
TRPC3	7222	genome.wustl.edu	37	4	122824151	122824151	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130698.1	-1	validated	p.G773	0.687	286	0%	237	33.8%	0	-	-	-	-	NULL
FAT4	79633	genome.wustl.edu	37	4	126372320	126372320	+	Silent	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024582.4	+1	validated	p.G3383	1.000	211	0%	210	33.3%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126372443	126372443	+	Silent	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024582.4	+1	validated	p.T3424	0.998	241	0%	236	25.8%	0	-	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin-like
INTU	27152	genome.wustl.edu	37	4	128565022	128565022	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015693.3	+1	validated	p.V165I	0.918	150	0%	181	26.5%	0	-	benign(0.001)	tolerated(0.46)	neutral(0.012)	NULL
CCRN4L	25819	genome.wustl.edu	37	4	139964399	139964399	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012118.2	+1	reviewed	p.R121Q	1.000	112	0%	105	30.5%	5	80%	possibly_damaging(0.707)	tolerated(0.23)	neutral(0.296)	NULL
TBC1D9	23158	genome.wustl.edu	37	4	141580745	141580745	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015130.2	-1	validated	p.V640M	1.000	174	0%	225	24%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
SMARCA5	8467	genome.wustl.edu	37	4	144468002	144468002	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003601.2	+1	reviewed	p.I865T	1.000	332	0%	340	29.1%	58	58.6%	benign(0.011)	tolerated(0.06)	neutral(0.323)	HMMSmart_SANT,superfamily_Homeodomain_like,superfamily_SSF52540
ZNF827	152485	genome.wustl.edu	37	4	146813469	146813469	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178835.3	-1	validated	p.G398S	1.000	243	0%	282	30.5%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF57667
EDNRA	1909	genome.wustl.edu	37	4	148461045	148461045	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001957.3	+1	reviewed	p.R326H	1.000	611	0%	567	33.7%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ARHGAP10	79658	genome.wustl.edu	37	4	148867849	148867849	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024605.3	+1	validated	p.Y462C	1.000	334	0%	441	28.6%	0	-	possibly_damaging(0.924)	deleterious(0)	deleterious(0.818)	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP
ARHGAP10	79658	genome.wustl.edu	37	4	148876522	148876522	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024605.3	+1	validated	p.A483T	1.000	448	0%	295	27.5%	1	0%	benign(0.328)	deleterious(0.01)	deleterious(0.509)	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP
FBXW7	55294	genome.wustl.edu	37	4	153247289	153247289	+	Missense_Mutation	SNP	G	G	A	rs149680468		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033632.2	-1	reviewed	p.R505C	1.000	270	0%	268	38.1%	8	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
MND1	84057	genome.wustl.edu	37	4	154335930	154335930	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032117.2	+1	validated	p.A180D	1.000	106	0%	99	22.2%	13	53.8%	probably_damaging(0.961)	deleterious(0)	deleterious(0.849)	HMMPfam_Mnd1
KIAA0922	23240	genome.wustl.edu	37	4	154557617	154557617	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015196.3	+1	validated	p.P1573	0.008	237	0%	263	31.9%	15	60%	-	-	-	NULL
TMEM144	55314	genome.wustl.edu	37	4	159158770	159158770	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018342.4	+1	validated	p.S219	0.002	210	0%	198	31.3%	6	83.3%	-	-	-	HMMPfam_DUF1632
C4orf45	152940	genome.wustl.edu	37	4	159836405	159836405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152543.2	-1	validated	p.A155T	0.001	430	0%	386	34.7%	0	-	probably_damaging(1)	tolerated(0.25)	deleterious(0.537)	NULL
TKTL2	84076	genome.wustl.edu	37	4	164394795	164394795	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032136.4	-1	validated	p.T31M	0.997	44	0%	78	39.7%	0	-	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	HMMPfam_Transketolase_N,superfamily_SSF52518
ANP32C	23520	genome.wustl.edu	37	4	165118696	165118696	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012403.1	-1	reviewed	p.S56	1.000	384	0%	358	27.4%	0	-	-	-	-	superfamily_L domain-like
DDX60	55601	genome.wustl.edu	37	4	169204596	169204596	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017631.5	-1	validated	e12+1	0.943	235	0%	181	28.2%	0	-	-	-	-	-
HMGB2	3148	genome.wustl.edu	37	4	174253307	174253309	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	TTC	TTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130688.1	-1	reviewed	p.K184in_frame_del	0.982:0.999:1.000	-	-	-	-	-	-	-	-	-	NULL
NEIL3	55247	genome.wustl.edu	37	4	178281685	178281685	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018248.2	+1	validated	p.P497T	0.000	135	0%	131	27.5%	2	50%	benign(0)	tolerated(1)	-	NULL
ENPP6	133121	genome.wustl.edu	37	4	185039027	185039027	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153343.3	-1	validated	p.I187T	1.000	103	0%	101	32.7%	0	-	possibly_damaging(0.68)	deleterious(0.01)	deleterious(0.648)	HMMPfam_Phosphodiest,superfamily_Alkaline_phosphatase_core
PDLIM3	27295	genome.wustl.edu	37	4	186435902	186435902	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114107.2	-1	reviewed	p.A158V	1.000	268	0.4%	276	33%	1	0%	possibly_damaging(0.848)	tolerated(0.07)	deleterious(0.645)	HMMSmart_ZM
FAM149A	25854	genome.wustl.edu	37	4	187075653	187075653	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001006655.2	+1	validated	p.A82T	0.000	265	0%	294	30.6%	33	45.4%	benign(0.014)	tolerated(0.56)	neutral(0.007)	NULL
FAT1	2195	genome.wustl.edu	37	4	187542067	187542067	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005245.3	-1	reviewed	p.P1891	0.983	221	0%	243	36.2%	11	63.6%	-	-	-	superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
AHRR	57491	genome.wustl.edu	37	5	433026	433026	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020731.3	+1	reviewed	p.G381D	0.000	38	0%	33	27.3%	0	-	benign(0.022)	deleterious(0.04)	neutral(0.350)	NULL
TPPP	11076	genome.wustl.edu	37	5	665247	665247	+	Silent	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007030.2	-1	validated	p.T210	0.992	50	0%	72	26.4%	0	-	-	-	-	HMMPfam_p25-alpha
IRX4	50805	genome.wustl.edu	37	5	1879863	1879863	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016358.2	-1	validated	p.H164R	1.000	251	0%	325	30.2%	0	-	unknown(0)	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
SEMA5A	9037	genome.wustl.edu	37	5	9197323	9197323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003966.2	-1	reviewed	p.R342H	1.000	115	0.9%	112	24.1%	1	100%	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
MARCH6	10299	genome.wustl.edu	37	5	10410326	10410326	+	Silent	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005885.2	+1	provisional	p.G543	0.992	199	0%	202	29.2%	48	41.6%	-	-	-	NULL
TRIO	7204	genome.wustl.edu	37	5	14291190	14291190	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007118.2	+1	validated	p.A302	0.045	69	0%	85	31.8%	3	66.6%	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
ZNF622	90441	genome.wustl.edu	37	5	16465181	16465181	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033414.2	-1	provisional	p.S198	0.001	73	0%	69	30.4%	20	30%	-	-	-	NULL
CDH10	1008	genome.wustl.edu	37	5	24535908	24535908	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006727.2	-1	reviewed	p.A184T	1.000	204	0%	179	27.9%	0	-	probably_damaging(0.962)	deleterious(0)	deleterious(0.850)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
RXFP3	51289	genome.wustl.edu	37	5	33937051	33937051	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016568.3	+1	validated	p.G69D	0.006	136	0%	151	33.1%	0	-	possibly_damaging(0.587)	tolerated(0.3)	neutral(0.231)	NULL
IL7R	3575	genome.wustl.edu	37	5	35867505	35867505	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002185.2	+1	reviewed	p.I107L	0.097	224	0%	197	24.9%	0	-	benign(0.051)	deleterious(0.02)	neutral(0.386)	NULL
NUP155	9631	genome.wustl.edu	37	5	37314336	37314336	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153485.1	-1	reviewed	p.E800	0.994	271	0%	241	35.3%	7	42.8%	-	-	-	HMMPfam_Nucleoporin
EGFLAM	133584	genome.wustl.edu	37	5	38412738	38412738	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152403.2	+1	validated	p.T494	0.036	74	0%	74	33.8%	0	-	-	-	-	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_1
RICTOR	253260	genome.wustl.edu	37	5	38991171	38991171	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152756.3	-1	validated	p.T155A	1.000	202	0%	246	26.4%	0	-	benign(0.201)	tolerated(0.93)	neutral(0.019)	superfamily_ARM repeat
HCN1	348980	genome.wustl.edu	37	5	45461949	45461949	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021072.2	-1	validated	p.V337A	1.000	111	0%	103	34%	0	-	benign(0.007)	tolerated(0.6)	neutral(0.004)	HMMPfam_Ion_trans,superfamily_SSF81324
ITGA1	3672	genome.wustl.edu	37	5	52206093	52206093	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181501.1	+1	reviewed	p.C567	0.084	166	0%	162	26.5%	5	0%	-	-	-	HMMSmart_Int_alpha,superfamily_SSF69318
MOCS2	4338	genome.wustl.edu	37	5	52404357	52404357	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176806.2	-1	reviewed	p.H45Q	1.000	485	0%	524	35.3%	24	50%	probably_damaging(0.991)	tolerated(0.28)	deleterious(0.476)	HMMPfam_ThiS,superfamily_Mo_synth/thiamin_syn_S_b-grasp
SNX18	112574	genome.wustl.edu	37	5	53815477	53815477	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052870.2	+1	reviewed	p.V565	0.000	140	0%	254	33.1%	0	-	-	-	-	HMMPfam_BAR_3_WASP_bdg
GZMK	3003	genome.wustl.edu	37	5	54327361	54327361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002104.2	+1	reviewed	p.R178Q	0.996	104	0%	98	28.6%	12	0%	probably_damaging(0.992)	tolerated(0.07)	deleterious(0.766)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
CCNO	10309	genome.wustl.edu	37	5	54527555	54527555	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021147.3	-1	validated	p.S234N	1.000	27	0%	31	22.6%	19	36.8%	benign(0.001)	tolerated(1)	-	HMMPfam_Cyclin_C,HMMSmart_SM00385,superfamily_Cyclin-like
DEPDC1B	55789	genome.wustl.edu	37	5	59901626	59901626	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018369.2	-1	validated	p.L319P	1.000	235	0%	214	32.7%	13	23%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RhoGAP,superfamily_GTPase activation domain GAP
LRRC70	100130733	genome.wustl.edu	37	5	61876402	61876402	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181506.4	+1	validated	p.I379	0.785	114	0%	66	31.8%	2	50%	-	-	-	HMMSmart_LRRCT,superfamily_SSF52058
RGS7BP	401190	genome.wustl.edu	37	5	63803630	63803630	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029875.1	+1	provisional	p.A86	0.066	131	0%	166	28.3%	0	-	-	-	-	NULL
ADAMTS6	11174	genome.wustl.edu	37	5	64587205	64587205	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_197941.2	-1	reviewed	p.E488G	1.000	192	0%	237	31.2%	0	-	possibly_damaging(0.869)	tolerated(0.09)	deleterious(0.633)	NULL
BDP1	55814	genome.wustl.edu	37	5	70834886	70834886	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018429.2	+1	reviewed	p.E1970D	0.913	317	0%	346	25.7%	1	0%	possibly_damaging(0.565)	deleterious(0)	deleterious(0.637)	NULL
ZNF366	167465	genome.wustl.edu	37	5	71739996	71739996	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152625.1	-1	provisional	p.G608R	0.955	27	0%	28	42.9%	1	0%	possibly_damaging(0.901)	tolerated(0.06)	deleterious(0.679)	NULL
TMEM171	134285	genome.wustl.edu	37	5	72419332	72419332	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173490.6	+1	validated	p.F44	1.000	260	0%	328	32.9%	1	100%	-	-	-	NULL
RGNEF	64283	genome.wustl.edu	37	5	73200220	73200220	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080479.2	+1	reviewed	p.Y1384C	0.996	526	0%	639	34%	36	52.7%	probably_damaging(0.992)	deleterious(0.02)	deleterious(0.831)	NULL
AGGF1	55109	genome.wustl.edu	37	5	76332528	76332528	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018046.3	+1	validated	p.G222S	1.000	118	0%	127	37%	8	75%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
PDE8B	8622	genome.wustl.edu	37	5	76645261	76645261	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003719.2	+1	validated	p.F298	0.932	116	0%	140	29.3%	0	-	-	-	-	HMMSmart_SM00091,HMMPfam_PAS,superfamily_PYP-like sensor domain (PAS domain)
PDE8B	8622	genome.wustl.edu	37	5	76721659	76721659	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003719.2	+1	validated	p.I829T	1.000	327	0%	288	28.1%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_PDEase_I,superfamily_HD-domain/PDEase-like
PAPD4	167153	genome.wustl.edu	37	5	78915557	78915557	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114393.1	+1	validated	p.V29A	1.000	383	0%	494	36.8%	18	33.3%	benign(0.002)	tolerated(0.15)	neutral(0.241)	NULL
ZFYVE16	9765	genome.wustl.edu	37	5	79768682	79768682	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105251.1	+1	validated	p.V1376A	0.924	260	0%	267	20.2%	23	13%	benign(0.393)	tolerated(0.58)	neutral(0.131)	NULL
RASA1	5921	genome.wustl.edu	37	5	86645120	86645120	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002890.1	+1	reviewed	p.R398*	1.000	321	0.3%	184	31%	2	50%	-	-	-	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
RASA1	5921	genome.wustl.edu	37	5	86672237	86672237	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002890.1	+1	reviewed	p.L680S	1.000	267	0%	264	30.7%	13	46.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
GPR98	84059	genome.wustl.edu	37	5	89938497	89938497	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032119.3	+1	reviewed	p.R762H	1.000	328	0.6%	250	30%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
GPR98	84059	genome.wustl.edu	37	5	90119340	90119340	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032119.3	+1	reviewed	p.S5432F	0.682	255	0%	337	28.2%	0	-	benign(0)	tolerated(0.45)	neutral(0.012)	NULL
ANKRD32	84250	genome.wustl.edu	37	5	94022375	94022375	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032290.3	+1	validated	p.L691	0.866	364	0%	397	30.5%	3	66.6%	-	-	-	NULL
EFNA5	1946	genome.wustl.edu	37	5	106717069	106717069	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001962.2	-1	reviewed	p.V192I	1.000	202	0%	232	34.9%	5	100%	benign(0.005)	tolerated(0.42)	neutral(0.014)	NULL
APC	324	genome.wustl.edu	37	5	112174655	112174655	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000038.4	+1	reviewed	p.N1122D	1.000	103	0%	105	29.5%	1	100%	benign(0.03)	deleterious(0.03)	neutral(0.366)	NULL
APC	324	genome.wustl.edu	37	5	112177477	112177477	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000038.4	+1	reviewed	p.K2062	0.973	172	0%	152	30.3%	2	50%	-	-	-	NULL
DMXL1	1657	genome.wustl.edu	37	5	118440935	118440935	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005509.4	+1	validated	p.I116V	1.000	269	0%	245	35.1%	1	0%	benign(0.001)	tolerated(0.21)	neutral(0.044)	HMMSmart_SM00320,superfamily_WD40 repeat-like
FTMT	94033	genome.wustl.edu	37	5	121188192	121188192	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177478.1	+1	validated	p.H178	0.435	77	0%	75	40%	0	-	-	-	-	HMMPfam_Ferritin,superfamily_Ferritin/RR_like
PPIC	5480	genome.wustl.edu	37	5	122372309	122372309	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000943.4	-1	reviewed	p.G4	0.000	9	0.000	22	0.273	95	43.1%	-	-	-	NULL
ADAMTS19	171019	genome.wustl.edu	37	5	129070708	129070708	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133638.3	+1	reviewed	p.C1126	0.975	218	0%	141	32.6%	0	-	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
CHSY3	337876	genome.wustl.edu	37	5	129520096	129520096	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175856.4	+1	validated	p.T421A	1.000	119	0%	131	28.2%	2	50%	probably_damaging(0.984)	tolerated(0.21)	deleterious(0.474)	HMMPfam_CHGN
DDX46	9879	genome.wustl.edu	37	5	134109506	134109506	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014829.2	+1	reviewed	p.E190K	1.000	344	0.3%	582	33.3%	21	52.3%	probably_damaging(0.968)	tolerated(0.46)	neutral(0.422)	NULL
H2AFY	9555	genome.wustl.edu	37	5	134670828	134670828	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138610.2	-1	reviewed	p.N319	0.979	135	0%	192	38%	284	42.2%	-	-	-	HMMPfam_Macro,HMMSmart_SM00506,superfamily_Macro domain-like
ETF1	2107	genome.wustl.edu	37	5	137853287	137853287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004730.2	-1	validated	p.T122M	1.000	285	0%	358	26%	45	40%	possibly_damaging(0.939)	deleterious(0)	deleterious(0.829)	HMMPfam_eRF1_1,superfamily_N-terminal domain of eukaryotic peptide chain release factor subunit 1 ERF1
LRRTM2	26045	genome.wustl.edu	37	5	138209840	138209840	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015564.2	-1	validated	p.N137I	1.000	341	0%	324	19.4%	0	-	benign(0)	tolerated(0.19)	neutral(0.050)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
HBEGF	1839	genome.wustl.edu	37	5	139722236	139722236	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001945.2	-1	validated	p.R128W	0.959	200	0%	263	37.6%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_EGF,superfamily_EGF/Laminin
APBB3	10307	genome.wustl.edu	37	5	139940623	139940623	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006051.3	-1	reviewed	p.L306P	1.000	163	0%	204	13.7%	6	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like
PCDHA2	56146	genome.wustl.edu	37	5	140176746	140176746	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018905.2	+1	reviewed	p.A733T	0.002	56	0%	87	36.8%	0	-	benign(0.001)	tolerated(0.15)	neutral(0.241)	NULL
PCDHA4	56144	genome.wustl.edu	37	5	140188800	140188800	+	Silent	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018907.2	+1	reviewed	p.P676	0.000	45	0%	60	20%	6	0%	-	-	-	HMMSmart_SM00112
PCDHA6	56142	genome.wustl.edu	37	5	140208774	140208774	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018909.2	+1	reviewed	p.G366	0.045	184	0%	263	23.6%	0	-	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHA8	56140	genome.wustl.edu	37	5	140222304	140222304	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018911.2	+1	reviewed	p.E466D	1.000	34	0%	45	62.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHB4	56131	genome.wustl.edu	37	5	140503806	140503806	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018938.2	+1	reviewed	p.G742	1.000	99	0%	136	27.9%	0	-	-	-	-	NULL
PCDHB15	56121	genome.wustl.edu	37	5	140627113	140627113	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018935.2	+1	reviewed	p.A656V	0.673	19	0%	24	33.3%	0	-	benign(0)	tolerated(1)	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
SLC25A2	83884	genome.wustl.edu	37	5	140683162	140683162	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031947.2	-1	reviewed	p.F91L	0.544	111	0%	152	35.5%	0	-	benign(0)	tolerated(0.76)	neutral(0.001)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
PCDHGA2	56113	genome.wustl.edu	37	5	140720411	140720411	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018915.2	+1	reviewed	p.E625K	0.999	57	0%	66	40.9%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA3	56112	genome.wustl.edu	37	5	140724324	140724324	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018916.3	+1	reviewed	p.F242L	0.999	77	0%	115	30.4%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_Cadherin-like
PCDHGB3	56102	genome.wustl.edu	37	5	140750473	140750473	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018924.2	+1	reviewed	p.Y171C	0.006	210	0%	243	13.6%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB3	56102	genome.wustl.edu	37	5	140751747	140751747	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018924.2	+1	reviewed	p.A596T	0.589	34	0%	35	37.1%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB4	8641	genome.wustl.edu	37	5	140767972	140767972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003736.2	+1	reviewed	p.P174L	0.000	166	0%	193	37.8%	0	-	benign(0.001)	tolerated(0.1)	neutral(0.286)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB7	56099	genome.wustl.edu	37	5	140799050	140799050	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018927.2	+1	reviewed	p.L542F	0.993	18	0%	37	27%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DIAPH1	1729	genome.wustl.edu	37	5	140953362	140953362	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005219.4	-1	reviewed	p.A685	0.001	15	0%	21	19%	54	44.4%	-	-	-	HMMPfam_Drf_FH1
KIAA0141	9812	genome.wustl.edu	37	5	141318089	141318089	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142603.1	+1	validated	p.P438L	0.000	179	0%	195	31.8%	35	45.7%	benign(0)	deleterious(0)	neutral(0.445)	NULL
SPRY4	81848	genome.wustl.edu	37	5	141694531	141694531	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030964.3	-1	validated	p.V71A	0.996	27	0%	31	38.7%	6	50%	benign(0)	tolerated(1)	-	NULL
AFAP1L1	134265	genome.wustl.edu	37	5	148699216	148699216	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152406.2	+1	validated	p.P517	0.002	126	0%	170	24.1%	3	100%	-	-	-	superfamily_PH domain-like
HMGXB3	22993	genome.wustl.edu	37	5	149431554	149431554	+	Silent	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014983.2	+1	validated	p.T1226	0.985	143	0%	187	34.8%	41	41.4%	-	-	-	NULL
NDST1	3340	genome.wustl.edu	37	5	149932869	149932869	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001543.4	+1	validated	p.R875Q	1.000	96	0%	114	28.1%	24	50%	possibly_damaging(0.502)	tolerated(0.19)	neutral(0.217)	superfamily_P-loop containing nucleoside triphosphate hydrolases
FAT2	2196	genome.wustl.edu	37	5	150887017	150887017	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001447.2	-1	reviewed	p.R4072H	0.012	126	0%	128	28.1%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
FAT2	2196	genome.wustl.edu	37	5	150947811	150947811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001447.2	-1	reviewed	p.R228W	0.973	58	0%	79	29.1%	0	-	probably_damaging(1)	tolerated(0.19)	deleterious(0.549)	HMMSmart_SM00112,superfamily_Cadherin-like
GLRA1	2741	genome.wustl.edu	37	5	151202325	151202325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000171.3	-1	reviewed	p.R420H	1.000	427	0%	426	35%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
GALNT10	55568	genome.wustl.edu	37	5	153709281	153709281	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198321.3	+1	reviewed	p.D184G	1.000	131	0%	163	25.2%	2	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
KIF4B	285643	genome.wustl.edu	37	5	154395199	154395199	+	Silent	SNP	C	C	T	rs139510975	by1000genomes	TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099293.1	+1	provisional	p.L594	1.000	237	0%	314	31.5%	0	-	-	-	-	NULL
TIMD4	91937	genome.wustl.edu	37	5	156378762	156378762	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138379.2	-1	validated	p.R147H	0.000	1202	0%	1581	31.5%	2	50%	possibly_damaging(0.907)	tolerated(0.08)	deleterious(0.660)	NULL
ADRA1B	147	genome.wustl.edu	37	5	159344757	159344757	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000679.3	+1	reviewed	p.K282R	1.000	79	0%	66	42.4%	2	0%	benign(0.115)	tolerated(0.42)	neutral(0.023)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GABRB2	2561	genome.wustl.edu	37	5	160758024	160758024	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021911.2	-1	reviewed	p.F315L	1.000	420	0%	480	30%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
WWC1	23286	genome.wustl.edu	37	5	167855038	167855038	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015238.2	+1	reviewed	p.A604V	0.764	241	0%	293	30%	40	37.5%	benign(0.01)	tolerated(0.3)	neutral(0.029)	NULL
SH3PXD2B	285590	genome.wustl.edu	37	5	171821625	171821625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017995.2	-1	validated	p.R84Q	0.597	163	0%	155	41.9%	0	-	probably_damaging(0.998)	tolerated(0.16)	deleterious(0.534)	HMMPfam_PX,HMMSmart_PX,superfamily_PX
MSX2	4488	genome.wustl.edu	37	5	174156278	174156278	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002449.4	+1	reviewed	p.Y166H	1.000	106	0%	152	38.2%	7	57.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
DRD1	1812	genome.wustl.edu	37	5	174869607	174869607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000794.3	-1	reviewed	p.A166T	1.000	227	0%	272	27.6%	0	-	benign(0.047)	tolerated(0.28)	neutral(0.035)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
RNF44	22838	genome.wustl.edu	37	5	175956344	175956344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014901.4	-1	reviewed	p.R394Q	1.000	79	0%	64	31.2%	55	49%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850
TSPAN17	26262	genome.wustl.edu	37	5	176084557	176084557	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012171.1	+1	validated	p.T286M	0.000	76	0%	77	29.9%	79	31.6%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
NSD1	64324	genome.wustl.edu	37	5	176707683	176707683	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022455.4	+1	reviewed	p.R1914C	1.000	148	0%	180	27.2%	13	38.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00570,superfamily_SET domain
RAB24	53917	genome.wustl.edu	37	5	176729796	176729796	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031677.2	-1	validated	p.S74R	1.000	114	0%	144	33.3%	50	38%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
PDLIM7	9260	genome.wustl.edu	37	5	176915112	176915112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005451.3	-1	reviewed	p.R336H	1.000	65	0%	78	32.1%	174	40.8%	probably_damaging(0.984)	tolerated(0.18)	deleterious(0.486)	superfamily_Glucocorticoid receptor-like (DNA-binding domain)
FAM153C	653316	genome.wustl.edu	37	5	177459829	177459829	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000511856	+1	known	p.T39	0.001	276	0%	245	22%	0	-	-	-	-	NULL
ZNF354A	6940	genome.wustl.edu	37	5	178139541	178139541	+	Silent	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005649.2	-1	validated	p.A446	0.943	253	0%	207	16.9%	7	14.2%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF354B	117608	genome.wustl.edu	37	5	178309720	178309720	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_058230.2	+1	validated	p.S89	0.001	97	0%	76	31.6%	4	25%	-	-	-	NULL
GRM6	2916	genome.wustl.edu	37	5	178413560	178413560	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000843.3	-1	reviewed	p.T565	0.000	19	0.000	7	0.714	0	-	-	-	-	NULL
TBC1D9B	23061	genome.wustl.edu	37	5	179326287	179326287	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198868.2	-1	validated	p.T84A	1.000	481	0%	549	29.5%	59	40.6%	probably_damaging(0.999)	tolerated(0.44)	deleterious(0.503)	NULL
RNF130	55819	genome.wustl.edu	37	5	179467519	179467519	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018434.4	-1	reviewed	p.N126D	1.000	321	0%	393	33.3%	2	50%	probably_damaging(0.998)	tolerated(0.16)	deleterious(0.534)	HMMPfam_PA,superfamily_SSF52025
FLT4	2324	genome.wustl.edu	37	5	180043957	180043957	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182925.4	-1	reviewed	p.D1013E	1.000	75	0%	105	33.3%	1	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
FLT4	2324	genome.wustl.edu	37	5	180048646	180048646	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182925.4	-1	reviewed	p.S639N	0.997	20	0%	25	24%	1	0%	benign(0)	tolerated(0.59)	neutral(0.004)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
BTNL8	79908	genome.wustl.edu	37	5	180377435	180377435	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040462.2	+1	validated	p.E465V	0.001	192	0%	194	35.1%	0	-	possibly_damaging(0.811)	tolerated(0.09)	deleterious(0.602)	NULL
TRIM41	90933	genome.wustl.edu	37	5	180651056	180651056	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033549.3	+1	validated	p.V19	1.000	60	0%	66	31.8%	12	66.6%	-	-	-	superfamily_RING/U-box
ENSG00000247767	0	genome.wustl.edu	37	6	2900665	2900665	+	RNA	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000499208	+1	novel	NULL	0.000	123	0%	170	24.1%	0	-	-	-	-	-
NQO2	4835	genome.wustl.edu	37	6	3015821	3015821	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000904.3	+1	validated	p.L121	1.000	115	0%	196	34.2%	109	44.9%	-	-	-	HMMPfam_Flavodoxin_2,superfamily_Flavoproteins
TUBB2B	347733	genome.wustl.edu	37	6	3225019	3225019	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178012.4	-1	reviewed	p.E435G	1.000	103	0%	152	30.3%	6	0%	unknown(0)	deleterious(0)	-	NULL
SLC22A23	63027	genome.wustl.edu	37	6	3284205	3284205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015482.1	-1	validated	p.M528I	1.000	103	0%	129	26.4%	1	0%	benign(0.146)	tolerated(0.33)	neutral(0.037)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SLC22A23	63027	genome.wustl.edu	37	6	3287187	3287187	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015482.1	-1	validated	p.C484	0.998	61	0%	61	31.1%	3	33.3%	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
LOC100287565	100287565	genome.wustl.edu	37	6	5368881	5368881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342599.1	-1	model	p.A178T	0.002	38	0%	44	18.2%	13	46.1%	-	-	-	NULL
DSP	1832	genome.wustl.edu	37	6	7582908	7582908	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004415.2	+1	reviewed	p.C1805R	1.000	208	0%	298	32.6%	71	43.6%	possibly_damaging(0.66)	tolerated(0.33)	neutral(0.257)	superfamily_tRNA-binding arm
PHACTR1	221692	genome.wustl.edu	37	6	13283684	13283684	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030948.1	+1	validated	p.R514W	0.928	132	0%	171	28.7%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RPEL,HMMSmart_SM00707
RANBP9	10048	genome.wustl.edu	37	6	13697122	13697122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005493.2	-1	reviewed	p.G193D	1.000	256	0%	271	29.5%	12	75%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
ATXN1	6310	genome.wustl.edu	37	6	16327531	16327531	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000332.3	-1	reviewed	p.P337	0.006	41	0%	51	23.5%	0	-	-	-	-	NULL
CAP2	10486	genome.wustl.edu	37	6	17421845	17421845	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006366.2	+1	reviewed	p.S20L	0.161	209	0%	242	36%	2	50%	benign(0)	deleterious(0.01)	neutral(0.406)	HMMPfam_CAP_N
NHLRC1	378884	genome.wustl.edu	37	6	18121926	18121926	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198586.2	-1	reviewed	p.V304	0.050	37	0%	33	27.3%	6	33.3%	-	-	-	superfamily_SSF101898
KDM1B	221656	genome.wustl.edu	37	6	18166561	18166561	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153042.3	+1	validated	p.T123	0.666	221	0%	297	33.3%	11	72.7%	-	-	-	NULL
CDKAL1	54901	genome.wustl.edu	37	6	20758843	20758843	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017774.3	+1	reviewed	p.R162	0.998	396	0%	384	33.1%	11	54.5%	-	-	-	superfamily_Radical SAM enzymes
PRL	5617	genome.wustl.edu	37	6	22294763	22294763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000948.4	-1	validated	p.A27T	0.005	56	0%	106	36.8%	0	-	benign(0)	tolerated(1)	-	HMMPfam_Hormone_1
HDGFL1	154150	genome.wustl.edu	37	6	22570159	22570159	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138574.2	+1	provisional	p.P119S	0.000	20	0%	15	53.3%	0	-	benign(0.29)	tolerated(0.45)	neutral(0.101)	superfamily_SSF63748
ALDH5A1	7915	genome.wustl.edu	37	6	24532388	24532388	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170740.1	+1	reviewed	p.A475V	0.185	471	0%	599	31.1%	6	16.6%	benign(0.074)	deleterious(0.02)	neutral(0.388)	HMMPfam_Aldedh,superfamily_ALDH-like
FAM65B	9750	genome.wustl.edu	37	6	24828457	24828457	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014722.2	-1	validated	p.S879L	0.610	62	0%	72	29.2%	2	0%	benign(0)	tolerated(0.28)	neutral(0.032)	NULL
HIST1H2BB	3018	genome.wustl.edu	37	6	26043717	26043717	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021062.2	-1	reviewed	p.S57T	1.000	485	0%	600	28.3%	0	-	benign(0.001)	deleterious(0.01)	neutral(0.406)	HMMSmart_H2B,HMMPfam_Histone,superfamily_Histone-fold
HIST1H3C	8352	genome.wustl.edu	37	6	26045860	26045860	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003531.2	+1	reviewed	p.E74	1.000	129	0%	124	33.1%	17	64.7%	-	-	-	HMMSmart_SM00428,PatternScan_HISTONE_H3_2,HMMPfam_Histone,superfamily_Histone-fold
HIST1H1E	3008	genome.wustl.edu	37	6	26157228	26157228	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005321.2	+1	reviewed	p.A204T	0.998	11	0%	19	26.3%	1	0%	unknown(0)	tolerated(1)	-	NULL
HIST1H2BG	8339	genome.wustl.edu	37	6	26216818	26216818	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003518.3	-1	reviewed	p.A18	0.042	324	0%	500	29.6%	3	66.6%	-	-	-	superfamily_Histone-fold
BTN3A1	11119	genome.wustl.edu	37	6	26410251	26410251	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007048.5	+1	validated	p.Y319H	0.007	349	0%	460	29.8%	32	50%	possibly_damaging(0.91)	deleterious(0)	deleterious(0.807)	NULL
ABT1	29777	genome.wustl.edu	37	6	26598524	26598524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013375.2	+1	reviewed	p.S157N	1.000	172	0%	285	29.1%	59	47.4%	possibly_damaging(0.931)	tolerated(0.1)	deleterious(0.664)	NULL
HIST1H2AG	8969	genome.wustl.edu	37	6	27101079	27101079	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021064.4	+1	reviewed	p.T77A	1.000	186	0%	228	34.2%	4	25%	benign(0.01)	deleterious(0.01)	neutral(0.406)	HMMSmart_SM00414,HMMPfam_Histone,superfamily_Histone-fold
ZNF184	7738	genome.wustl.edu	37	6	27420571	27420571	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007149.2	-1	validated	p.E256G	0.959	445	0%	294	29.6%	3	66.6%	benign(0)	tolerated(1)	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF192	7745	genome.wustl.edu	37	6	28120099	28120099	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006298.2	+1	validated	p.P238S	0.932	257	0%	238	26.9%	1	0%	benign(0)	tolerated(0.76)	neutral(0.001)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF323	64288	genome.wustl.edu	37	6	28297193	28297193	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135215.1	-1	validated	p.I90V	0.030	192	0%	206	28.6%	3	0%	benign(0.06)	deleterious(0)	neutral(0.449)	HMMPfam_SCAN,HMMSmart_SCAN
OR5V1	81696	genome.wustl.edu	37	6	29323303	29323303	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030876.5	-1	validated	p.T224A	0.000	78	0%	91	31.9%	0	-	benign(0.092)	tolerated(1)	neutral(0.007)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
DDR1	780	genome.wustl.edu	37	6	30862384	30862384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000361741	+1	known	p.R187H	0.932	89	0%	107	39.3%	156	46.1%	unknown(0)	tolerated(0.25)	-	NULL
CYP21A2	1589	genome.wustl.edu	37	6	32008184	32008184	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000500.5	+1	reviewed	p.I314T	0.668	22	0%	18	38.9%	0	-	probably_damaging(0.96)	deleterious(0)	deleterious(0.848)	HMMPfam_p450,superfamily_Cytochrome_P450
MIR219-1	407002	genome.wustl.edu	37	6	33175657	33175657	+	RNA	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000362166	+1	known	NULL	1.000	102	0%	122	32.8%	0	-	-	-	-	-
B3GALT4	8705	genome.wustl.edu	37	6	33246013	33246013	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003782.3	+1	reviewed	p.A273T	0.962	59	0%	50	26%	17	23.5%	possibly_damaging(0.765)	tolerated(0.15)	deleterious(0.525)	HMMPfam_Galactosyl_T
DAXX	1616	genome.wustl.edu	37	6	33289266	33289266	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001141970.1	-1	reviewed	p.H108Y	0.823	109	0%	150	26.7%	35	51.4%	possibly_damaging(0.873)	tolerated(0.85)	neutral(0.340)	HMMPfam_Daxx
KIFC1	3833	genome.wustl.edu	37	6	33374217	33374217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002263.3	+1	validated	p.S594N	1.000	94	0%	101	24.8%	58	51.7%	probably_damaging(0.98)	tolerated(0.15)	deleterious(0.665)	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
ETV7	51513	genome.wustl.edu	37	6	36343663	36343663	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016135.2	-1	provisional	p.R98C	0.997	87	1.1%	103	30.1%	37	35.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SAM_PNT,HMMSmart_SM00251,superfamily_SAM/Pointed domain
PPIL1	51645	genome.wustl.edu	37	6	36823635	36823635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016059.4	-1	reviewed	p.R152H	0.999	137	0%	185	24.9%	47	29.7%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Pro_isomerase,superfamily_Cyclophilin-like
C6orf89	221477	genome.wustl.edu	37	6	36884249	36884249	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152734.3	+1	validated	p.L249I	0.956	274	0%	271	32.8%	37	40.5%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
COX6A1P2	285849	genome.wustl.edu	37	6	37012794	37012794	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000423336	+1	known	p.S53	1.000	112	0%	145	32.4%	316	0%	-	-	-	HMMPfam_COX6A,superfamily_COX6A
MDGA1	266727	genome.wustl.edu	37	6	37626100	37626100	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153487.3	-1	validated	p.T101	0.581	37	0%	49	28.6%	3	100%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
DNAH8	1769	genome.wustl.edu	37	6	38834385	38834385	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001371.2	+1	validated	p.R1956C	1.000	164	0%	181	23.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
C6orf130	221443	genome.wustl.edu	37	6	41036690	41036690	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145063.2	-1	predicted	p.I82	1.000	245	0%	258	33.3%	12	33.3%	-	-	-	superfamily_SSF52949
CUL9	23113	genome.wustl.edu	37	6	43172818	43172818	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015089.2	+1	validated	p.A1533T	0.995	90	0%	80	26.3%	5	40%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_Cullin
CRIP3	401262	genome.wustl.edu	37	6	43275369	43275369	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000416431	-1	known	p.P51S	0.996	81	0%	144	34%	0	-	-	-	-	HMMSmart_SM00132
ABCC10	89845	genome.wustl.edu	37	6	43417262	43417262	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033450.2	+1	reviewed	p.I1408F	1.000	65	0%	102	27.5%	28	25%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_SSF52540
DLK2	65989	genome.wustl.edu	37	6	43419710	43419710	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000430324	-1	known	p.A34V	0.775	124	0%	193	32.6%	0	-	-	-	-	HMMSmart_SM00179,superfamily_EGF/Laminin
GTPBP2	54676	genome.wustl.edu	37	6	43592392	43592392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019096.3	-1	validated	p.D319N	1.000	79	0%	111	35.1%	36	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GTP_EFTU,superfamily_P-loop containing nucleoside triphosphate hydrolases
TDRD6	221400	genome.wustl.edu	37	6	46657910	46657910	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010870.2	+1	validated	p.H682R	0.000	117	0%	146	21.9%	0	-	benign(0.001)	tolerated(0.35)	neutral(0.021)	NULL
GPR116	221395	genome.wustl.edu	37	6	46826945	46826945	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098518.1	-1	validated	p.T899A	1.000	289	0%	339	28.9%	1	0%	possibly_damaging(0.461)	tolerated(0.09)	neutral(0.448)	NULL
OPN5	221391	genome.wustl.edu	37	6	47763200	47763200	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181744.2	+1	reviewed	p.Y219	0.732	117	0%	139	32.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OPN5	221391	genome.wustl.edu	37	6	47775997	47775997	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181744.2	+1	reviewed	p.S288	0.910	585	0%	568	31.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
GSTA5	221357	genome.wustl.edu	37	6	52697705	52697705	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153699.1	-1	provisional	p.Y166	0.003	349	0%	459	32%	0	-	-	-	-	HMMPfam_GST_C,superfamily_GST_C_like
ICK	22858	genome.wustl.edu	37	6	52877004	52877004	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014920.3	-1	reviewed	p.H392fs	0.138	-	-	-	-	-	-	-	-	-	NULL
ICK	22858	genome.wustl.edu	37	6	52877006	52877006	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014920.3	-1	reviewed	p.E391fs	0.792	-	-	-	-	-	-	-	-	-	NULL
ICK	22858	genome.wustl.edu	37	6	52877010	52877015	+	In_Frame_Del	DEL	GGCCAG	GGCCAG	-	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	GGCCAG	GGCCAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014920.3	-1	reviewed	p.AGL388in_frame_delV	0.112:0.065:0.045:0.060:0.055:0.083	-	-	-	-	-	-	-	-	-	NULL
GCM1	8521	genome.wustl.edu	37	6	52999119	52999119	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003643.3	-1	reviewed	p.V27M	0.991	188	0%	229	31.4%	0	-	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	superfamily_GCM_motif
FAM83B	222584	genome.wustl.edu	37	6	54792419	54792419	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010872.1	+1	validated	p.Y241	0.994	303	0%	248	33.1%	2	100%	-	-	-	HMMPfam_DUF1669,superfamily_SSF56024
COL21A1	81578	genome.wustl.edu	37	6	55990372	55990372	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030820.3	-1	reviewed	p.G548D	1.000	507	0%	489	29%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Collagen
DST	667	genome.wustl.edu	37	6	56335939	56335939	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015548.4	-1	reviewed	p.T4806M	1.000	311	0%	268	29.9%	2	0%	probably_damaging(1)	-	-	HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand
DST	667	genome.wustl.edu	37	6	56480605	56480605	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001723.5	-1	reviewed	p.R2554*	0.918	238	0%	200	29.5%	0	-	-	-	-	HMMPfam_Plectin,HMMSmart_PLEC,superfamily_SSF75399
ZNF451	26036	genome.wustl.edu	37	6	56999549	56999549	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031623.2	+1	validated	p.H195Y	1.000	314	0%	342	35.7%	0	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
EYS	346007	genome.wustl.edu	37	6	66044890	66044890	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142800.1	-1	reviewed	p.D583	0.611	460	0%	262	12.2%	0	-	-	-	-	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_EGF/Laminin
FILIP1	27145	genome.wustl.edu	37	6	76022250	76022250	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015687.2	-1	validated	p.E1100K	0.967	194	0%	204	36.8%	1	0%	possibly_damaging(0.701)	tolerated(0.2)	neutral(0.301)	NULL
FILIP1	27145	genome.wustl.edu	37	6	76063368	76063368	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015687.2	-1	validated	p.A172	0.002	258	0%	353	33.1%	0	-	-	-	-	HMMPfam_CortBP2
PHIP	55023	genome.wustl.edu	37	6	79651023	79651023	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017934.5	-1	validated	p.V1618A	0.262	132	0%	91	33%	6	33.3%	benign(0)	tolerated(0.48)	neutral(0.011)	NULL
IBTK	25998	genome.wustl.edu	37	6	82924521	82924521	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015525.2	-1	reviewed	p.S543P	0.991	113	0%	99	29.3%	6	50%	benign(0.002)	tolerated(0.32)	neutral(0.024)	superfamily_POZ domain
CYB5R4	51167	genome.wustl.edu	37	6	84618769	84618769	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016230.3	+1	validated	p.C124	1.000	406	0%	510	33.7%	12	25%	-	-	-	HMMPfam_Cyt-b5,superfamily_Cyt_B5
NT5E	4907	genome.wustl.edu	37	6	86200256	86200256	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002526.2	+1	validated	p.V414A	0.998	206	0%	232	35.3%	58	55.1%	possibly_damaging(0.842)	tolerated(0.1)	deleterious(0.609)	HMMPfam_5_nucleotid_C,superfamily_5apos-Nucleotdase_C
UBE2J1	51465	genome.wustl.edu	37	6	90052043	90052043	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016021.2	-1	reviewed	p.T79	1.000	220	0%	233	29.2%	32	40.6%	-	-	-	HMMPfam_UQ_con,HMMSmart_UBCc,superfamily_UBQ-conjugat/RWD-like
ANKRD6	22881	genome.wustl.edu	37	6	90340652	90340652	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000415924	+1	known	p.I618T	0.939	115	0%	159	37.7%	0	-	-	-	-	NULL
BACH2	60468	genome.wustl.edu	37	6	90660988	90660988	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021813.2	-1	validated	p.P279	0.188	116	0%	118	31.4%	0	-	-	-	-	NULL
SIM1	6492	genome.wustl.edu	37	6	100838448	100838448	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005068.2	-1	reviewed	p.N697S	1.000	255	0%	293	23.5%	0	-	benign(0.026)	tolerated(0.39)	neutral(0.017)	NULL
HACE1	57531	genome.wustl.edu	37	6	105225079	105225079	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020771.3	-1	validated	e15+2	1.000	226	0%	220	32.3%	0	-	-	-	-	-
PREP	5550	genome.wustl.edu	37	6	105824093	105824093	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002726.3	-1	reviewed	p.R98*	1.000	173	0%	161	32.3%	8	0%	-	-	-	HMMPfam_Peptidase_S9_N,superfamily_Peptidase_S9A_N
SMPD2	6610	genome.wustl.edu	37	6	109763488	109763488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003080.2	+1	validated	p.A132T	0.973	307	0.7%	435	32.2%	44	50%	benign(0.221)	tolerated(0.06)	neutral(0.345)	HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos
LAMA4	3910	genome.wustl.edu	37	6	112430688	112430688	+	Silent	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105206.1	-1	reviewed	p.A1808	0.998	177	0%	182	34.6%	112	53.5%	-	-	-	superfamily_Concanavalin A-like lectins/glucanases
LAMA4	3910	genome.wustl.edu	37	6	112471735	112471735	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105206.1	-1	reviewed	p.K717	0.003	386	0%	506	32.8%	17	23.5%	-	-	-	NULL
TSPYL1	7259	genome.wustl.edu	37	6	116600626	116600626	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003309.3	-1	reviewed	p.K123R	0.000	47	0%	56	21.4%	18	16.6%	benign(0.388)	tolerated(0.2)	neutral(0.173)	NULL
ECHDC1	55862	genome.wustl.edu	37	6	127636020	127636020	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018479.3	-1	validated	p.A129T	0.028	246	0%	213	26.8%	38	26.3%	unknown(0)	tolerated(0.26)	-	NULL
SOGA3	387104	genome.wustl.edu	37	6	127796764	127796764	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012279.2	-1	validated	p.G803W	0.803	26	0%	25	44%	0	-	probably_damaging(0.966)	deleterious(0)	deleterious(0.853)	NULL
PTPRK	5796	genome.wustl.edu	37	6	128294231	128294231	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135648.1	-1	validated	p.V1408D	1.000	267	0%	312	33.7%	110	50.9%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
LAMA2	3908	genome.wustl.edu	37	6	129723549	129723549	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000426.3	+1	reviewed	p.I1881M	0.218	236	0%	209	31.6%	0	-	benign(0)	tolerated(0.43)	neutral(0.013)	superfamily_ConA_like_lec_gl,superfamily_SSF56399
ARHGAP18	93663	genome.wustl.edu	37	6	129962959	129962959	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033515.2	-1	validated	e2+2	1.000	446	0%	374	31%	0	-	-	-	-	-
EPB41L2	2037	genome.wustl.edu	37	6	131199329	131199329	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001431.3	-1	validated	p.R653H	1.000	489	0%	535	33.5%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SAB
VNN1	8876	genome.wustl.edu	37	6	133005624	133005624	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004666.2	-1	reviewed	p.C403	0.016	178	0%	153	34.6%	27	25.9%	-	-	-	NULL
VNN1	8876	genome.wustl.edu	37	6	133032858	133032858	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004666.2	-1	reviewed	p.N111D	0.001	225	0%	263	36.9%	15	6.6%	benign(0)	tolerated(1)	-	superfamily_Ntlse/CNhydtse
SLC2A12	154091	genome.wustl.edu	37	6	134350469	134350469	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145176.2	-1	validated	p.G165A	1.000	166	0%	196	32.1%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
PEX7	5191	genome.wustl.edu	37	6	137191098	137191098	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000288.3	+1	reviewed	p.V235A	0.998	510	0%	424	17.9%	15	46.6%	possibly_damaging(0.623)	tolerated(0.2)	neutral(0.266)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
HECA	51696	genome.wustl.edu	37	6	139487580	139487580	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016217.2	+1	reviewed	p.Q144L	1.000	51	0%	55	36.4%	9	66.6%	possibly_damaging(0.918)	tolerated(0.57)	neutral(0.374)	NULL
VTA1	51534	genome.wustl.edu	37	6	142519691	142519691	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016485.3	+1	provisional	p.I212M	0.128	223	0%	223	32.3%	55	56.3%	probably_damaging(0.988)	tolerated(0.14)	deleterious(0.687)	HMMPfam_DUF605
ADGB	79747	genome.wustl.edu	37	6	147085042	147085042	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024694.3	+1	provisional	p.K1186E	1.000	140	0%	113	20.4%	0	-	possibly_damaging(0.918)	tolerated(0.3)	neutral(0.397)	NULL
STXBP5	134957	genome.wustl.edu	37	6	147581799	147581799	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127715.1	+1	reviewed	p.G160	1.000	296	0%	294	33.3%	3	33.3%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
SASH1	23328	genome.wustl.edu	37	6	148853975	148853975	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015278.3	+1	validated	p.R536Q	1.000	151	0%	168	32.1%	8	37.5%	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	NULL
SYNE1	23345	genome.wustl.edu	37	6	152577787	152577787	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.F6362	0.058	158	0%	296	33.1%	1	0%	-	-	-	superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152642424	152642424	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.E5395	0.990	323	0%	335	32.8%	0	-	-	-	-	NULL
SYNE1	23345	genome.wustl.edu	37	6	152642897	152642897	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.N5348D	1.000	439	0%	539	32.8%	0	-	possibly_damaging(0.903)	-	-	NULL
SYNE1	23345	genome.wustl.edu	37	6	152688199	152688199	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000454018	-1	known	p.C493G	0.000	44	0%	30	40%	1	0%	benign(0)	-	-	NULL
SYNE1	23345	genome.wustl.edu	37	6	152730762	152730762	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.A2105S	1.000	336	0%	355	30.1%	0	-	possibly_damaging(0.858)	-	-	HMMSmart_SM00150
SYNE1	23345	genome.wustl.edu	37	6	152787171	152787171	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.T559A	1.000	308	0%	288	25.7%	1	0%	possibly_damaging(0.466)	tolerated(1)	neutral(0.153)	superfamily_Spectrin repeat
CNKSR3	154043	genome.wustl.edu	37	6	154763345	154763345	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173515.2	-1	validated	p.I99K	0.915	211	0%	269	32.7%	10	30%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_CRIC_ras_sig
SCAF8	22828	genome.wustl.edu	37	6	155153581	155153581	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014892.3	+1	validated	p.S956	0.021	150	0%	96	35.4%	17	47%	-	-	-	NULL
FNDC1	84624	genome.wustl.edu	37	6	159653636	159653636	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032532.2	+1	validated	p.R698W	0.000	24	0%	40	20%	0	-	unknown(0)	deleterious(0)	-	NULL
SOD2	6648	genome.wustl.edu	37	6	160114181	160114181	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000636.2	-1	reviewed	p.C7R	0.002	13	0%	25	28%	920	50.5%	benign(0.055)	tolerated(0.07)	neutral(0.323)	NULL
IGF2R	3482	genome.wustl.edu	37	6	160445699	160445699	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000876.2	+1	reviewed	p.P203	0.201	373	0%	523	30.2%	15	33.3%	-	-	-	HMMPfam_CIMR,superfamily_Mannose 6-phosphate receptor domain
SLC22A1	6580	genome.wustl.edu	37	6	160542971	160542971	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003057.2	+1	reviewed	p.P2S	0.991	99	0%	136	25.7%	0	-	benign(0.016)	tolerated(0.83)	neutral(0.001)	NULL
SLC22A2	6582	genome.wustl.edu	37	6	160679604	160679604	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003058.2	-1	reviewed	p.R62	0.239	53	0%	65	38.5%	0	-	-	-	-	NULL
C6orf118	168090	genome.wustl.edu	37	6	165715271	165715271	+	Silent	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144980.3	-1	validated	p.P180	0.283	58	0%	49	34.7%	0	-	-	-	-	NULL
T	6862	genome.wustl.edu	37	6	166575998	166575998	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003181.2	-1	reviewed	p.T281A	0.001	174	0%	254	31.1%	0	-	benign(0)	tolerated(0.34)	neutral(0.023)	NULL
RPS6KA2	6196	genome.wustl.edu	37	6	166827418	166827418	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001006932.1	-1	reviewed	p.D655G	1.000	112	0%	98	24.5%	9	0%	possibly_damaging(0.496)	deleterious(0.01)	deleterious(0.571)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
RPS6KA2	6196	genome.wustl.edu	37	6	166831741	166831741	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001006932.1	-1	reviewed	p.N645fs	0.998	-	-	-	-	-	-	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
DACT2	168002	genome.wustl.edu	37	6	168708347	168708347	+	Missense_Mutation	SNP	C	C	T	rs139117263	by1000genomes	TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_214462.3	-1	validated	p.R697H	0.094	39	0%	57	22.8%	38	52.6%	benign(0)	tolerated(0.12)	neutral(0.261)	NULL
THBS2	7058	genome.wustl.edu	37	6	169637352	169637352	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003247.2	-1	reviewed	p.C464G	1.000	99	0%	129	20.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1
ELFN1	392617	genome.wustl.edu	37	7	1785069	1785069	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128636.2	+1	validated	p.P279	0.000	12	0%	14	35.7%	0	-	-	-	-	NULL
SDK1	221935	genome.wustl.edu	37	7	4119166	4119166	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152744.3	+1	validated	p.P1092S	0.982	255	0%	381	34.9%	8	50%	probably_damaging(0.969)	deleterious(0.03)	deleterious(0.776)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
RADIL	55698	genome.wustl.edu	37	7	4843413	4843413	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000423090	-1	known	p.H63Y	0.000	34	0%	50	24%	0	-	-	-	-	NULL
RBAK	57786	genome.wustl.edu	37	7	5104616	5104616	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021163.3	+1	reviewed	p.P510L	0.998	94	0%	84	22.6%	5	40%	benign(0.102)	deleterious(0.01)	neutral(0.414)	superfamily_C2H2 and C2HC zinc fingers
TNRC18	84629	genome.wustl.edu	37	7	5434156	5434156	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080495.2	-1	provisional	p.V86	0.996	42	0%	94	28.7%	15	26.6%	-	-	-	NULL
THSD7A	221981	genome.wustl.edu	37	7	11485860	11485860	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015204.2	-1	validated	p.Q964	1.000	391	0%	335	31.9%	0	-	-	-	-	NULL
VWDE	221806	genome.wustl.edu	37	7	12410439	12410439	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135924.1	-1	provisional	p.M547L	1.000	109	0%	74	27%	0	-	benign(0.131)	tolerated(0.4)	neutral(0.027)	HMMSmart_SM00216
SOSTDC1	25928	genome.wustl.edu	37	7	16502336	16502336	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015464.2	-1	reviewed	p.R153H	1.000	268	0%	298	35.9%	177	40.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sclerostin
ITGB8	3696	genome.wustl.edu	37	7	20441600	20441600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002214.2	+1	reviewed	p.S513L	0.189	444	0.2%	536	29.9%	19	47.3%	benign(0.006)	tolerated(0.23)	neutral(0.042)	HMMPfam_EGF_2,superfamily_EGF/Laminin
RAPGEF5	9771	genome.wustl.edu	37	7	22202099	22202099	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012294.3	-1	validated	p.R295	0.945	213	0%	250	22.8%	2	50%	-	-	-	HMMPfam_RasGEF_N,HMMSmart_SM00229,superfamily_Ras GEF
NFE2L3	9603	genome.wustl.edu	37	7	26217744	26217744	+	Splice_Site	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004289.6	+1	reviewed	e2+2	0.999	81	0%	118	25.4%	0	-	-	-	-	-
JAZF1	221895	genome.wustl.edu	37	7	28031622	28031622	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000427814	-1	known	p.I18	0.039	240	0%	226	31%	0	-	benign(0.01)	-	-	NULL
WIPF3	644150	genome.wustl.edu	37	7	29927790	29927790	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000242140	+1	known	p.Q402	0.519	78	0%	116	20.7%	1	0%	-	-	-	NULL
ELMO1	9844	genome.wustl.edu	37	7	37253007	37253007	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014800.9	-1	reviewed	p.V296A	1.000	256	0%	249	31.7%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GPR141	353345	genome.wustl.edu	37	7	37780273	37780273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181791.1	+1	provisional	p.A93V	0.995	142	0%	113	28.3%	0	-	possibly_damaging(0.811)	tolerated(0.06)	deleterious(0.628)	HMMPfam_7tm_1,superfamily_SSF81321
GLI3	2737	genome.wustl.edu	37	7	42065943	42065943	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000168.5	-1	reviewed	p.R366Q	1.000	378	0%	684	33.2%	0	-	possibly_damaging(0.777)	tolerated(0.64)	neutral(0.293)	NULL
HECW1	23072	genome.wustl.edu	37	7	43484056	43484056	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015052.3	+1	validated	p.G429R	0.003	45	0%	67	44.8%	0	-	benign(0.017)	tolerated(0.5)	neutral(0.011)	NULL
HECW1	23072	genome.wustl.edu	37	7	43495971	43495971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015052.3	+1	validated	p.R859H	1.000	115	0%	124	31.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP
AEBP1	165	genome.wustl.edu	37	7	44152343	44152343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001129.3	+1	reviewed	p.E802K	0.975	52	0%	30	20%	15	0%	possibly_damaging(0.895)	deleterious(0.04)	deleterious(0.702)	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
OGDH	4967	genome.wustl.edu	37	7	44736044	44736044	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002541.3	+1	reviewed	p.D596	0.366	167	0%	238	30.7%	51	45%	-	-	-	superfamily_SSF52518
PKD1L1	168507	genome.wustl.edu	37	7	47886637	47886637	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138295.2	-1	reviewed	p.A1665T	1.000	383	0%	330	25.5%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
PKD1L1	168507	genome.wustl.edu	37	7	47894791	47894791	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138295.2	-1	reviewed	p.K1555E	0.001	405	0%	402	29.6%	0	-	benign(0)	tolerated(0.87)	neutral(0.001)	NULL
ABCA13	154664	genome.wustl.edu	37	7	48416037	48416037	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152701.3	+1	reviewed	e35-1	1.000	412	0%	407	32.2%	0	-	-	-	-	-
ABCA13	154664	genome.wustl.edu	37	7	48619896	48619896	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152701.3	+1	reviewed	p.E4811K	0.962	135	0%	157	29.9%	3	100%	probably_damaging(0.979)	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
IKZF1	10320	genome.wustl.edu	37	7	50367253	50367253	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000331340	+1	known	p.V20	0.008	99	0%	111	25.2%	2	0%	-	-	-	NULL
ZNF138	7697	genome.wustl.edu	37	7	64291977	64291977	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006524.2	+1	validated	p.G62	0.075	361	0%	381	31%	2	100%	-	-	-	NULL
AUTS2	26053	genome.wustl.edu	37	7	70255979	70255979	+	Silent	SNP	A	A	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015570.2	+1	validated	p.R1259	0.957	56	0%	41	31.7%	12	58.3%	-	-	-	NULL
WBSCR22	114049	genome.wustl.edu	37	7	73111951	73111951	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017528.2	+1	reviewed	p.S240P	0.000	115	0%	122	32.8%	201	42.7%	benign(0.067)	tolerated(0.27)	neutral(0.038)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
LIMK1	3984	genome.wustl.edu	37	7	73511478	73511478	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002314.2	+1	reviewed	p.D120	0.982	94	0%	121	39.7%	53	33.9%	-	-	-	HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
GTF2IRD2	84163	genome.wustl.edu	37	7	74234554	74234554	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173537.2	-1	validated	e6-1	0.843	1221	0%	1719	15.9%	2	0%	-	-	-	-
RHBDD2	57414	genome.wustl.edu	37	7	75511186	75511186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040456.1	+1	validated	p.P73L	0.768	100	0%	109	31.2%	86	45.3%	possibly_damaging(0.931)	tolerated(1)	neutral(0.378)	HMMPfam_Rhomboid
DTX2	113878	genome.wustl.edu	37	7	76112075	76112075	+	Silent	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102594.1	+1	validated	p.R173	1.000	66	0%	72	12.5%	47	10.6%	-	-	-	HMMPfam_WWE,HMMSmart_SM00678
RSBN1L	222194	genome.wustl.edu	37	7	77325866	77325866	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198467.2	+1	validated	p.G27D	0.115	38	0%	43	30.2%	8	25%	unknown(0)	deleterious(0)	-	NULL
CACNA2D1	781	genome.wustl.edu	37	7	81662206	81662206	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000722.2	-1	reviewed	p.S350	0.975	398	0%	292	28.1%	0	-	-	-	-	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
PCLO	27445	genome.wustl.edu	37	7	82457211	82457211	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033026.5	-1	validated	p.Y4774C	1.000	423	0%	338	30.8%	0	-	unknown(0)	-	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
PCLO	27445	genome.wustl.edu	37	7	82531978	82531978	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033026.5	-1	validated	p.H4506R	1.000	773	0%	543	30.6%	0	-	unknown(0)	-	-	HMMPfam_PDZ,superfamily_PDZ domain-like
PCLO	27445	genome.wustl.edu	37	7	82578881	82578881	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033026.5	-1	validated	p.M3675V	1.000	222	0%	192	21.9%	0	-	possibly_damaging(0.612)	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82763857	82763857	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033026.5	-1	validated	p.P1003	0.000	371	0%	306	22.5%	0	-	-	-	-	NULL
SEMA3E	9723	genome.wustl.edu	37	7	83095841	83095841	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012431.2	-1	reviewed	p.F138S	1.000	288	0%	330	35.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
KIAA1324L	222223	genome.wustl.edu	37	7	86577110	86577110	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142749.2	-1	validated	p.S147P	1.000	224	0%	216	32.9%	0	-	probably_damaging(0.956)	tolerated(0.07)	deleterious(0.719)	superfamily_Growth factor receptor domain
ABCB4	5244	genome.wustl.edu	37	7	87056221	87056221	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018849.2	-1	reviewed	p.I637L	0.011	243	0%	185	28.6%	0	-	benign(0)	tolerated(0.31)	neutral(0.027)	NULL
AKAP9	10142	genome.wustl.edu	37	7	91660827	91660827	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005751.4	+1	reviewed	p.F1416S	0.996	288	0%	341	29.3%	4	50%	benign(0.299)	deleterious(0)	deleterious(0.537)	NULL
KRIT1	889	genome.wustl.edu	37	7	91864911	91864911	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004912.3	-1	reviewed	p.R179*	1.000	350	0%	290	31.4%	8	25%	-	-	-	NULL
ANKIB1	54467	genome.wustl.edu	37	7	91924317	91924317	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019004.1	+1	validated	p.R9C	1.000	215	0.9%	204	30.4%	4	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_ANK
ANKIB1	54467	genome.wustl.edu	37	7	91980369	91980369	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019004.1	+1	validated	p.S397	1.000	373	0%	294	29.3%	13	30.7%	-	-	-	superfamily_SSF57850
ANKIB1	54467	genome.wustl.edu	37	7	92015915	92015915	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019004.1	+1	validated	p.V570	1.000	336	0%	330	30%	13	38.4%	unknown(0)	-	-	HMMSmart_RING
TECPR1	25851	genome.wustl.edu	37	7	97873997	97873997	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015395.1	-1	provisional	p.T139	0.006	96	0%	133	36.1%	3	33.3%	-	-	-	HMMSmart_SM00694
TRRAP	8295	genome.wustl.edu	37	7	98580927	98580927	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003496.2	+1	validated	p.I2931N	0.998	171	0%	211	31.3%	17	29.4%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_FAT,superfamily_ARM repeat,superfamily_Protein prenylyltransferase
CPSF4	10898	genome.wustl.edu	37	7	99048378	99048378	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006693.2	+1	validated	p.V153M	1.000	112	0%	123	36.6%	18	22.2%	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	HMMPfam_zf-CCCH,HMMSmart_SM00356,superfamily_CCCH zinc finger
ZKSCAN1	7586	genome.wustl.edu	37	7	99631749	99631750	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003439.1	+1	validated	p.R543fs	0.322:0.996	-	-	-	-	-	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
PVRIG	79037	genome.wustl.edu	37	7	99818808	99818808	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024070.3	+1	validated	p.P305	0.001	85	0%	80	23.7%	9	0%	-	-	-	NULL
ZCWPW1	55063	genome.wustl.edu	37	7	100014767	100014767	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017984.3	-1	validated	p.A134V	0.193	279	0%	332	34%	2	0%	benign(0.002)	tolerated(0.59)	neutral(0.004)	NULL
MEPCE	56257	genome.wustl.edu	37	7	100029091	100029091	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019606.4	+1	provisional	p.R484C	1.000	65	0%	78	35.9%	41	43.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF53335
TFR2	7036	genome.wustl.edu	37	7	100225018	100225018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003227.3	-1	reviewed	p.V622M	0.984	53	0%	61	31.1%	1	0%	probably_damaging(0.953)	deleterious(0.01)	deleterious(0.802)	superfamily_Zn-dependent exopeptidases
MUC17	140453	genome.wustl.edu	37	7	100695178	100695178	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040105.1	+1	provisional	p.G4346	0.177	182	0%	205	14.1%	0	-	-	-	-	NULL
CUX1	1523	genome.wustl.edu	37	7	101921326	101921326	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001913.2	+1	reviewed	p.Y557C	1.000	43	0%	41	26.8%	57	31.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CASP_C
DNAJC2	27000	genome.wustl.edu	37	7	102968185	102968185	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014377.1	-1	reviewed	p.L116	1.000	494	0%	505	33.5%	21	61.9%	-	-	-	HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain
PSMC2	5701	genome.wustl.edu	37	7	103008400	103008400	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002803.2	+1	reviewed	p.R401*	1.000	262	0%	311	21.5%	190	22.1%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
RELN	5649	genome.wustl.edu	37	7	103629691	103629691	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005045.3	-1	reviewed	p.F38S	1.000	38	0%	49	30.6%	0	-	benign(0.099)	deleterious(0)	neutral(0.452)	NULL
PIK3CG	5294	genome.wustl.edu	37	7	106508837	106508837	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002649.2	+1	reviewed	p.R277	0.205	104	0%	91	27.5%	1	0%	-	-	-	HMMPfam_PI3K_rbd,HMMSmart_SM00144,superfamily_Ubiquitin-like
TMEM168	64418	genome.wustl.edu	37	7	112407787	112407787	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022484.4	-1	validated	p.L520P	1.000	31	0%	28	39.3%	7	42.8%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
C7orf60	154743	genome.wustl.edu	37	7	112555363	112555363	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152556.2	-1	validated	p.C100	1.000	367	0%	423	32.2%	1	0%	-	-	-	NULL
PPP1R3A	5506	genome.wustl.edu	37	7	113519747	113519747	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002711.3	-1	reviewed	p.N467I	0.001	107	0%	62	32.3%	0	-	probably_damaging(0.977)	deleterious(0.03)	deleterious(0.783)	NULL
CTTNBP2	83992	genome.wustl.edu	37	7	117431370	117431370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033427.2	-1	reviewed	p.A627V	1.000	141	0%	160	32.5%	0	-	possibly_damaging(0.496)	deleterious(0)	deleterious(0.610)	NULL
ANKRD7	56311	genome.wustl.edu	37	7	117876203	117876203	+	Splice_Site	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019644.3	+1	validated	e4+2	1.000	127	0%	173	37.6%	0	-	-	-	-	-
PTPRZ1	5803	genome.wustl.edu	37	7	121638047	121638047	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002851.2	+1	reviewed	p.P409	0.133	208	0.5%	236	37.7%	1	0%	-	-	-	superfamily_Fibronectin type III
SMO	6608	genome.wustl.edu	37	7	128851979	128851979	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005631.3	+1	provisional	p.P684L	0.994	28	0%	42	23.8%	16	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAM40B	57464	genome.wustl.edu	37	7	129125553	129125553	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020704.2	+1	validated	p.S796	0.995	135	0%	141	28.4%	4	25%	-	-	-	NULL
PLXNA4	91584	genome.wustl.edu	37	7	131866361	131866361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020911.1	-1	validated	p.A1091T	0.055	62	0%	77	31.2%	0	-	benign(0)	tolerated(0.63)	neutral(0.004)	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
PLXNA4	91584	genome.wustl.edu	37	7	131883388	131883388	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020911.1	-1	validated	p.P865L	1.000	121	0%	114	29.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
WEE2	494551	genome.wustl.edu	37	7	141430104	141430104	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105558.1	+1	validated	p.R563H	0.122	391	0%	399	36.3%	0	-	benign(0.006)	tolerated(0.13)	neutral(0.253)	NULL
TRBV5-1	28614	genome.wustl.edu	37	7	142021320	142021320	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390381	+1	known	p.L100F	0.046	179	0%	170	29.4%	1	0%	possibly_damaging(0.903)	tolerated(0.05)	deleterious(0.704)	HMMPfam_V-set,superfamily_SSF48726
TRBV10-2	28584	genome.wustl.edu	37	7	142206708	142206708	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000426318	-1	known	p.S49	0.000	127	0%	179	38.5%	0	-	-	-	-	HMMPfam_V-set,superfamily_SSF48726
PRSS1	5644	genome.wustl.edu	37	7	142482212	142482212	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000311757	+1	known	p.G212S	1.000	60	0%	52	50%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_SER
CASP2	835	genome.wustl.edu	37	7	142997045	142997045	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032982.2	+1	reviewed	p.A259	0.901	90	0%	107	30.8%	13	30.7%	-	-	-	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like
ZNF398	57541	genome.wustl.edu	37	7	148876640	148876640	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170686.2	+1	reviewed	p.R559H	1.000	78	0%	112	32.1%	8	25%	benign(0.392)	deleterious(0)	deleterious(0.570)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF777	27153	genome.wustl.edu	37	7	149129126	149129126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015694.2	-1	validated	p.R746H	1.000	27	0%	50	28%	50	46%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_SSF57667
SSPO	23145	genome.wustl.edu	37	7	149490533	149490533	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000378016	+1	known	p.P2003	0.001	110	0%	187	27.3%	0	-	-	-	-	HMMPfam_VWC,HMMSmart_SM00214
ZNF775	285971	genome.wustl.edu	37	7	150095000	150095000	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173680.3	+1	validated	p.P477	0.000	13	0%	24	33.3%	4	50%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
GIMAP8	155038	genome.wustl.edu	37	7	150171183	150171183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175571.2	+1	reviewed	p.R256C	0.134	95	0%	101	29.7%	2	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_AIG1,superfamily_SSF52540
KCNH2	3757	genome.wustl.edu	37	7	150648559	150648559	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000238.2	-1	reviewed	p.S641F	1.000	60	0%	94	26.6%	1	0%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
FASTK	10922	genome.wustl.edu	37	7	150774819	150774819	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006712.3	-1	reviewed	p.T363M	0.970	77	0%	126	23.8%	101	56.4%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_FAST_2
AGAP3	116988	genome.wustl.edu	37	7	150815392	150815392	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031946.4	+1	validated	p.A268T	0.989	46	0%	69	24.6%	71	32.3%	possibly_damaging(0.53)	deleterious(0)	deleterious(0.623)	HMMSmart_SM00173,HMMSmart_SM00175,superfamily_P-loop containing nucleoside triphosphate hydrolases
MLL3	58508	genome.wustl.edu	37	7	151848561	151848561	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170606.2	-1	reviewed	p.R4211Q	1.000	245	0%	279	30.5%	11	27.2%	unknown(0)	-	-	NULL
RBM33	155435	genome.wustl.edu	37	7	155567329	155567329	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053043.2	+1	validated	p.Q1151R	1.000	255	0%	280	32.5%	4	0%	probably_damaging(0.99)	tolerated(0.29)	deleterious(0.471)	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
PTPRN2	5799	genome.wustl.edu	37	7	157341655	157341655	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002847.3	-1	reviewed	p.G987	1.000	196	0%	250	34.4%	0	-	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
ARHGEF10	9639	genome.wustl.edu	37	8	1876699	1876699	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014629.2	+1	reviewed	p.M935T	1.000	181	0%	266	31.6%	6	50%	possibly_damaging(0.808)	tolerated(0.05)	deleterious(0.649)	superfamily_WD40_like
ARHGEF10	9639	genome.wustl.edu	37	8	1900928	1900928	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014629.2	+1	reviewed	p.G1152D	1.000	27	0%	30	40%	3	33.3%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	PatternScan_THIOL_PROTEASE_HIS,superfamily_WD40_like
DEFA5	1670	genome.wustl.edu	37	8	6914175	6914175	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021010.1	-1	reviewed	p.L15	0.763	304	0%	313	27.2%	0	-	-	-	-	HMMPfam_Defensin_propep
MTMR7	9108	genome.wustl.edu	37	8	17161981	17161981	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004686.4	-1	reviewed	p.R467Q	0.999	432	0%	399	33.3%	0	-	benign(0.054)	tolerated(0.61)	neutral(0.007)	superfamily_(Phosphotyrosine protein) phosphatases II
MTMR7	9108	genome.wustl.edu	37	8	17228550	17228550	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004686.4	-1	reviewed	p.R102	0.918	216	0%	261	33%	0	-	-	-	-	superfamily_PH domain-like
XPO7	23039	genome.wustl.edu	37	8	21856657	21856657	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100161.1	+1	validated	p.K837	1.000	301	0%	409	28.4%	36	58.3%	-	-	-	superfamily_ARM repeat
HR	55806	genome.wustl.edu	37	8	21981247	21981247	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005144.4	-1	reviewed	p.T610	1.000	24	0%	47	40.4%	0	-	-	-	-	NULL
PIWIL2	55124	genome.wustl.edu	37	8	22147807	22147807	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135721.1	+1	validated	p.L377	0.941	254	0%	354	34.7%	0	-	-	-	-	superfamily_PAZ domain
SLC39A14	23516	genome.wustl.edu	37	8	22269695	22269695	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128431.2	+1	validated	p.N201	1.000	135	0%	169	33.7%	4	50%	-	-	-	HMMPfam_Zip
KIAA1967	57805	genome.wustl.edu	37	8	22472984	22472984	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021174.4	+1	validated	p.R418W	1.000	89	0%	103	36.9%	38	34.2%	possibly_damaging(0.824)	deleterious(0)	deleterious(0.756)	NULL
TNFRSF10D	8793	genome.wustl.edu	37	8	23002033	23002033	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003840.3	-1	reviewed	p.I295T	0.000	97	0%	110	15.5%	7	42.8%	possibly_damaging(0.83)	tolerated(0.1)	deleterious(0.602)	NULL
R3HCC1	203069	genome.wustl.edu	37	8	23147951	23147951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136108.1	+1	validated	p.S87L	0.004	215	0%	441	35.6%	17	35.2%	benign(0)	tolerated(0.21)	neutral(0.044)	NULL
ADAM7	8756	genome.wustl.edu	37	8	24321436	24321436	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000380789	+1	known	p.M92T	0.000	344	0%	356	30.1%	0	-	benign(0)	tolerated(0.1)	neutral(0.286)	HMMPfam_Pep_M12B_propep
ADAM7	8756	genome.wustl.edu	37	8	24349612	24349612	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000380789	+1	known	e14+1	0.998	104	0%	89	43.8%	0	-	-	-	-	-
CDCA2	157313	genome.wustl.edu	37	8	25364731	25364731	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152562.2	+1	validated	p.H850R	0.000	89	0%	97	35.1%	10	30%	possibly_damaging(0.707)	tolerated(0.49)	neutral(0.266)	NULL
PTK2B	2185	genome.wustl.edu	37	8	27277442	27277442	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004103.3	+1	reviewed	p.R79W	0.993	146	0%	162	40.7%	12	25%	probably_damaging(0.997)	tolerated(0.07)	deleterious(0.785)	HMMSmart_SM00295
FZD3	7976	genome.wustl.edu	37	8	28385040	28385040	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017412.2	+1	reviewed	p.G255*	1.000	201	0.5%	148	38.5%	6	66.6%	-	-	-	HMMPfam_Frizzled
KIF13B	23303	genome.wustl.edu	37	8	28971069	28971069	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015254.3	-1	validated	p.F1281L	1.000	205	0%	216	29.6%	24	41.6%	probably_damaging(0.998)	tolerated(0.55)	deleterious(0.481)	NULL
KIF13B	23303	genome.wustl.edu	37	8	28984759	28984759	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015254.3	-1	validated	p.E1034D	1.000	171	0%	190	31.1%	18	66.6%	benign(0.01)	tolerated(0.47)	neutral(0.011)	NULL
MAK16	84549	genome.wustl.edu	37	8	33346615	33346615	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032509.3	+1	validated	p.Q118fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Mak16
RAB11FIP1	80223	genome.wustl.edu	37	8	37756911	37756911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002814.2	-1	validated	p.P17S	1.000	8	0.000	16	0.250	8	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
ADAM32	203102	genome.wustl.edu	37	8	39089583	39089583	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145004.5	+1	validated	p.I521M	0.551	402	0%	295	33.2%	1	0%	possibly_damaging(0.9)	deleterious(0.01)	deleterious(0.762)	HMMPfam_ADAM_CR,HMMSmart_SM00608
ANK1	286	genome.wustl.edu	37	8	41553932	41553932	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142446.1	-1	reviewed	p.G1011D	1.000	24	0%	31	38.7%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_ZU5,HMMSmart_ZU5
VDAC3	7419	genome.wustl.edu	37	8	42259478	42259478	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135694.1	+1	validated	p.Q167*	1.000	249	0.4%	327	32.1%	101	2.9%	-	-	-	HMMPfam_Porin_3
RP1	6101	genome.wustl.edu	37	8	55542703	55542703	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006269.1	+1	reviewed	p.V2087	0.888	90	0%	63	27%	0	-	-	-	-	NULL
TMEM68	137695	genome.wustl.edu	37	8	56675270	56675270	+	Silent	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152417.1	-1	provisional	p.A83	0.193	215	0%	192	15.1%	10	10%	-	-	-	NULL
LYN	4067	genome.wustl.edu	37	8	56859042	56859042	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002350.2	+1	validated	p.F56L	0.988	172	0%	149	31.5%	56	35.7%	benign(0.008)	tolerated(0.65)	neutral(0.003)	superfamily_SH3-domain
SDR16C6P	442388	genome.wustl.edu	37	8	57295157	57295157	+	Missense_Mutation	SNP	C	C	T	rs138667651	by1000genomes	TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000444271	-1	known	p.V160M	1.000	180	0%	199	30.7%	0	-	-	-	-	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
CHD7	55636	genome.wustl.edu	37	8	61743067	61743067	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017780.2	+1	reviewed	p.N1237D	1.000	162	0%	216	25.5%	0	-	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	HMMPfam_SNF2_N
PREX2	80243	genome.wustl.edu	37	8	68939479	68939479	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024870.2	+1	validated	p.R155Q	1.000	321	0%	239	28%	9	55.5%	probably_damaging(0.996)	tolerated(0.19)	deleterious(0.511)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
SULF1	23213	genome.wustl.edu	37	8	70488245	70488245	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128204.1	+1	validated	p.E71D	0.635	179	0%	207	27.1%	7	0%	probably_damaging(0.966)	deleterious(0.02)	deleterious(0.791)	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
SLCO5A1	81796	genome.wustl.edu	37	8	70588858	70588858	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030958.2	-1	reviewed	p.L692S	0.973	187	0%	220	30.5%	0	-	probably_damaging(0.992)	deleterious(0.02)	deleterious(0.831)	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter
EYA1	2138	genome.wustl.edu	37	8	72182031	72182031	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000503.4	-1	reviewed	p.T332A	1.000	374	0%	380	32.9%	0	-	possibly_damaging(0.839)	deleterious(0)	deleterious(0.765)	HMMPfam_Hydrolase
WWP1	11059	genome.wustl.edu	37	8	87423902	87423902	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007013.3	+1	validated	p.L287P	0.000	340	0%	325	31.7%	3	0%	benign(0)	tolerated(0.28)	neutral(0.032)	NULL
WWP1	11059	genome.wustl.edu	37	8	87439886	87439886	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007013.3	+1	validated	p.V391A	1.000	307	0%	392	26.8%	12	25%	possibly_damaging(0.847)	tolerated(0.61)	neutral(0.329)	HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain
VPS13B	157680	genome.wustl.edu	37	8	100133611	100133611	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017890.3	+1	reviewed	p.T382A	0.086	361	0%	331	28.4%	0	-	benign(0.001)	deleterious(0.02)	neutral(0.383)	NULL
VPS13B	157680	genome.wustl.edu	37	8	100791128	100791128	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017890.3	+1	reviewed	p.G2575R	0.992	144	0%	101	27.7%	0	-	possibly_damaging(0.933)	tolerated(0.07)	deleterious(0.698)	NULL
VPS13B	157680	genome.wustl.edu	37	8	100829904	100829904	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017890.3	+1	reviewed	p.K2770R	0.999	251	0%	292	23.6%	1	0%	probably_damaging(0.996)	tolerated(0.71)	neutral(0.463)	NULL
VPS13B	157680	genome.wustl.edu	37	8	100866100	100866100	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017890.3	+1	reviewed	p.N3520D	0.000	159	0%	245	31%	6	66.6%	benign(0.044)	tolerated(0.27)	neutral(0.036)	NULL
DCAF13	25879	genome.wustl.edu	37	8	104455034	104455034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015420.6	+1	validated	p.R573H	0.994	185	0%	196	27%	70	42.8%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Sof1
RAD21	5885	genome.wustl.edu	37	8	117875399	117875399	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006265.2	-1	reviewed	p.F82I	0.999	427	0%	289	36.3%	43	53.4%	benign(0.006)	deleterious(0.01)	neutral(0.406)	HMMPfam_Rad21_Rec8_N
TNFRSF11B	4982	genome.wustl.edu	37	8	119945384	119945384	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002546.3	-1	reviewed	p.C62	0.001	401	0%	452	31%	61	52.4%	-	-	-	HMMPfam_TNFR_c6,HMMSmart_SM00208,PatternScan_TNFR_NGFR_1,superfamily_TNF receptor-like
NOV	4856	genome.wustl.edu	37	8	120430340	120430340	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002514.3	+1	reviewed	p.R118H	0.963	245	0%	369	32.8%	36	33.3%	probably_damaging(0.967)	tolerated(0.09)	deleterious(0.706)	HMMPfam_VWC,HMMSmart_VWC
ENPP2	5168	genome.wustl.edu	37	8	120575164	120575164	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006209.3	-1	reviewed	p.C837Y	1.000	167	0%	227	30%	8	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Endonuclease_NS,HMMSmart_SM00477,superfamily_His-Me finger endonucleases
COL14A1	7373	genome.wustl.edu	37	8	121295904	121295904	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021110.1	+1	validated	p.D1285V	1.000	354	0%	279	29%	0	-	probably_damaging(1)	-	-	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases
ZHX2	22882	genome.wustl.edu	37	8	123966079	123966079	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014943.3	+1	reviewed	p.R777W	0.995	168	0%	316	30.1%	23	69.5%	possibly_damaging(0.824)	deleterious(0.01)	deleterious(0.718)	NULL
ASAP1	50807	genome.wustl.edu	37	8	131193047	131193047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018482.2	-1	validated	p.A204T	1.000	698	0%	741	31.7%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TG	7038	genome.wustl.edu	37	8	134147000	134147000	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003235.4	+1	reviewed	p.S2757R	0.000	194	0%	227	30.8%	1	100%	possibly_damaging(0.462)	deleterious(0)	deleterious(0.596)	NULL
FAM135B	51059	genome.wustl.edu	37	8	139209843	139209843	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015912.3	-1	validated	p.L247	0.992	150	0.7%	112	22.3%	0	-	-	-	-	NULL
COL22A1	169044	genome.wustl.edu	37	8	139890130	139890130	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152888.1	-1	validated	p.A174V	0.999	17	0%	23	39.1%	1	100%	unknown(0)	deleterious(0)	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
DENND3	22898	genome.wustl.edu	37	8	142161872	142161872	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014957.2	+1	validated	p.F257S	0.998	121	0%	112	33%	6	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DENN,HMMSmart_SM00799
FLJ43860	389690	genome.wustl.edu	37	8	142481189	142481189	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207414.2	-1	validated	p.S658G	0.000	174	0%	228	30.7%	0	-	benign(0)	tolerated(0.35)	neutral(0.021)	superfamily_ARM repeat
FLJ43860	389690	genome.wustl.edu	37	8	142490476	142490476	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207414.2	-1	validated	p.P275S	0.001	62	0%	78	33.3%	0	-	benign(0.073)	tolerated(1)	neutral(0.005)	NULL
ENSG00000247396	0	genome.wustl.edu	37	8	143740224	143740224	+	RNA	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000501891	+1	known	NULL	0.009	99	0%	91	20.9%	3	0%	-	-	-	-
CYP11B2	1585	genome.wustl.edu	37	8	143999189	143999189	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000498.3	-1	reviewed	p.A23V	0.022	62	0%	72	34.7%	0	-	benign(0.313)	tolerated(0.19)	neutral(0.147)	NULL
ZC3H3	23144	genome.wustl.edu	37	8	144523241	144523241	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015117.2	-1	validated	p.A786V	0.000	12	0%	20	25%	19	15.7%	benign(0)	tolerated(1)	-	HMMPfam_zf-CCCH,HMMSmart_SM00356,superfamily_CCCH zinc finger
ZC3H3	23144	genome.wustl.edu	37	8	144621248	144621248	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015117.2	-1	validated	p.G97R	0.000	27	0%	22	31.8%	10	70%	benign(0.004)	tolerated(0.18)	neutral(0.056)	NULL
NRBP2	340371	genome.wustl.edu	37	8	144921104	144921104	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000442628	-1	known	p.A232V	0.629	74	0%	148	27%	11	45.4%	benign(0.004)	tolerated(0.28)	neutral(0.032)	superfamily_Kinase_like
EPPK1	83481	genome.wustl.edu	37	8	144942355	144942355	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031308.1	-1	validated	p.G1689	1.000	123	0%	108	30.6%	3	33.3%	-	-	-	HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Plakin repeat
EPPK1	83481	genome.wustl.edu	37	8	144944795	144944795	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031308.1	-1	validated	p.A876V	0.002	12	0%	15	33.3%	1	100%	benign(0)	tolerated(0.26)	neutral(0.034)	HMMSmart_SM00250
PLEC	5339	genome.wustl.edu	37	8	144990903	144990903	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201380.2	-1	reviewed	p.P4499	0.163	29	0%	31	19.4%	228	53%	-	-	-	HMMSmart_SM00250,superfamily_Plakin repeat
PLEC	5339	genome.wustl.edu	37	8	144996867	144996867	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201380.2	-1	reviewed	p.A2547	0.000	48	0%	50	46%	56	46.4%	-	-	-	NULL
SLC52A2	79581	genome.wustl.edu	37	8	145584581	145584581	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024531.3	+1	validated	p.G415D	1.000	83	0%	108	33.3%	320	47.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CPSF1	29894	genome.wustl.edu	37	8	145621625	145621625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013291.2	-1	validated	p.D973N	1.000	25	0%	55	34.5%	53	52.8%	benign(0.003)	tolerated(0.42)	neutral(0.014)	NULL
RECQL4	9401	genome.wustl.edu	37	8	145738264	145738264	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000428558	-1	known	p.Q907	0.995	69	0%	81	33.3%	38	34.2%	-	-	-	NULL
KANK1	23189	genome.wustl.edu	37	9	713368	713368	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015158.2	+1	reviewed	p.S868G	1.000	93	0%	122	33.6%	7	57.1%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_ANK
SMARCA2	6595	genome.wustl.edu	37	9	2123927	2123927	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003070.3	+1	reviewed	p.Q1324R	1.000	104	0%	90	24.4%	22	22.7%	benign(0.023)	deleterious(0.03)	neutral(0.365)	NULL
SMARCA2	6595	genome.wustl.edu	37	9	2182212	2182212	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003070.3	+1	reviewed	p.N1477	0.819	151	0%	140	35.7%	44	47.7%	-	-	-	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1
RFX3	5991	genome.wustl.edu	37	9	3225083	3225083	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_134428.1	-1	reviewed	p.R737G	1.000	311	0.3%	293	27.3%	3	33.3%	benign(0.322)	deleterious(0)	deleterious(0.545)	NULL
ERMP1	79956	genome.wustl.edu	37	9	5811114	5811114	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024896.2	-1	validated	p.K442E	0.882	268	0%	273	36.6%	19	52.6%	benign(0)	tolerated(0.63)	neutral(0.004)	NULL
PTPRD	5789	genome.wustl.edu	37	9	8504274	8504274	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002839.3	-1	reviewed	p.R603	1.000	304	0.3%	400	32.8%	0	-	-	-	-	HMMSmart_SM00409,superfamily_Fibronectin type III
SNAPC3	6619	genome.wustl.edu	37	9	15457986	15457986	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039697.1	+1	validated	p.R337G	1.000	498	0%	483	29%	16	43.7%	possibly_damaging(0.553)	tolerated(0.2)	neutral(0.237)	NULL
C9orf93	203238	genome.wustl.edu	37	9	15874627	15874627	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173550.2	+1	predicted	p.G1189V	1.000	275	0%	202	29.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SLC24A2	25769	genome.wustl.edu	37	9	19520959	19520959	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020344.1	-1	provisional	p.R557W	1.000	247	0%	231	30.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Na_Ca_ex
NFX1	4799	genome.wustl.edu	37	9	33344158	33344158	+	Silent	SNP	C	C	T	rs144519029	by1000genomes	TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002504.3	+1	reviewed	p.C772	0.966	244	0%	340	28.2%	19	31.5%	-	-	-	NULL
RPP25L	138716	genome.wustl.edu	37	9	34611147	34611147	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148178.1	-1	validated	p.G49	0.000	121	0%	122	27%	33	42.4%	-	-	-	HMMPfam_Alba,superfamily_SSF82704
SIGMAR1	10280	genome.wustl.edu	37	9	34635772	34635772	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005866.2	-1	reviewed	p.V177I	1.000	127	0%	147	36.1%	170	50%	benign(0.228)	tolerated(0.48)	neutral(0.033)	HMMPfam_ERG2_Sigma1R
RUSC2	9853	genome.wustl.edu	37	9	35555067	35555067	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135999.1	+1	validated	p.T675	0.885	65	0%	87	14.9%	1	100%	-	-	-	NULL
TPM2	7169	genome.wustl.edu	37	9	35685649	35685649	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003289.3	-1	reviewed	p.S123	0.999	81	0%	105	32.4%	333	28.5%	-	-	-	HMMPfam_Tropomyosin
NPR2	4882	genome.wustl.edu	37	9	35800723	35800723	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003995.3	+1	reviewed	p.S412	0.921	161	0%	220	30%	0	-	-	-	-	superfamily_Periplasmic binding protein-like I
RECK	8434	genome.wustl.edu	37	9	36083483	36083483	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021111.2	+1	reviewed	p.C187	0.996	262	0%	205	29.8%	0	-	-	-	-	NULL
MELK	9833	genome.wustl.edu	37	9	36633103	36633103	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014791.2	+1	provisional	p.D247G	1.000	142	0%	154	28.6%	19	47.3%	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
FAM189A2	9413	genome.wustl.edu	37	9	72003049	72003049	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000377216	+1	known	p.T65A	0.000	73	0%	75	22.7%	0	-	possibly_damaging(0.741)	-	-	NULL
APBA1	320	genome.wustl.edu	37	9	72047501	72047501	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001163.3	-1	reviewed	p.A798V	1.000	108	0%	156	32.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
TMEM2	23670	genome.wustl.edu	37	9	74345637	74345637	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013390.2	-1	validated	p.G586A	0.997	175	0%	198	25.8%	15	40%	benign(0.084)	tolerated(0.24)	neutral(0.043)	superfamily_Pectin lyase-like
ANXA1	301	genome.wustl.edu	37	9	75780119	75780119	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000700.1	+1	reviewed	p.R234C	1.000	459	0%	376	28.2%	693	38.2%	benign(0.069)	deleterious(0.04)	neutral(0.353)	superfamily_Annexin,PatternScan_ANNEXIN,HMMPfam_Annexin,HMMSmart_SM00335
PRUNE2	158471	genome.wustl.edu	37	9	79318451	79318451	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000426088	-1	known	p.W2014*	0.000	202	0%	176	30.1%	2	0%	benign(0.323)	deleterious(0)	deleterious(0.545)	NULL
DAPK1	1612	genome.wustl.edu	37	9	90252978	90252978	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004938.2	+1	reviewed	p.I135	0.893	293	0%	337	28.5%	24	37.5%	-	-	-	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMPfam_Pkinase
NXNL2	158046	genome.wustl.edu	37	9	91159310	91159310	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000375854	+1	known	p.Y107N	1.000	84	0%	136	25%	6	100%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_Thioredoxin-like
C9orf47	286223	genome.wustl.edu	37	9	91606045	91606045	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001938.3	+1	validated	p.P45	0.192	34	0%	55	32.7%	0	-	-	-	-	NULL
IARS	3376	genome.wustl.edu	37	9	95022465	95022465	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002161.4	-1	reviewed	p.S613	0.000	434	0%	384	32%	25	52%	-	-	-	HMMPfam_tRNA-synt_1,superfamily_SSF52374
NOL8	55035	genome.wustl.edu	37	9	95077414	95077414	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017948.5	-1	validated	p.D498G	0.004	300	0%	301	27.9%	5	40%	benign(0.316)	tolerated(0.29)	neutral(0.128)	NULL
PTPDC1	138639	genome.wustl.edu	37	9	96857602	96857602	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152422.3	+1	reviewed	p.Y205C	1.000	273	0%	445	32.1%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_SSF52799
PTPDC1	138639	genome.wustl.edu	37	9	96860863	96860863	+	Splice_Site	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152422.3	+1	reviewed	e6+2	1.000	74	0%	73	31.5%	0	-	-	-	-	-
FBP2	8789	genome.wustl.edu	37	9	97321409	97321409	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003837.2	-1	reviewed	p.R277	1.000	82	0%	65	23.1%	0	-	-	-	-	HMMPfam_FBPase,PatternScan_FBPASE,superfamily_SSF56655
FANCC	2176	genome.wustl.edu	37	9	97873833	97873833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000136.2	-1	reviewed	p.S414L	0.000	163	0%	192	33.3%	7	42.8%	benign(0.119)	tolerated(0.09)	neutral(0.306)	HMMPfam_Fanconi_C
PTCH1	5727	genome.wustl.edu	37	9	98231279	98231279	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000264.3	-1	reviewed	p.Y668	0.997	305	0%	426	34.7%	2	50%	-	-	-	HMMPfam_Patched
C9orf174	100499483	genome.wustl.edu	37	9	100071855	100071855	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020893.1	+1	predicted	p.D260N	0.027	48	0%	69	33.3%	0	-	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	NULL
TSTD2	158427	genome.wustl.edu	37	9	100367820	100367820	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139246.4	-1	validated	p.M353T	1.000	129	0%	137	29.9%	9	44.4%	possibly_damaging(0.476)	deleterious(0)	deleterious(0.602)	HMMPfam_Rhodanese,HMMSmart_SM00450,superfamily_Rhodanese/Cell cycle control phosphatase
XPA	7507	genome.wustl.edu	37	9	100437827	100437827	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000380.3	-1	reviewed	p.T239M	0.209	337	0%	344	34.9%	13	69.2%	probably_damaging(0.995)	deleterious(0.04)	deleterious(0.806)	NULL
COL15A1	1306	genome.wustl.edu	37	9	101747932	101747932	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001855.3	+1	reviewed	p.G62	1.000	99	0%	112	29.5%	11	9%	-	-	-	HMMSmart_TSPN,superfamily_ConA_like_lec_gl
NIPSNAP3A	25934	genome.wustl.edu	37	9	107515279	107515279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015469.1	+1	provisional	p.D122N	0.238	247	0%	291	34.7%	25	44%	benign(0.11)	tolerated(0.45)	neutral(0.021)	HMMPfam_NIPSNAP
ACTL7A	10881	genome.wustl.edu	37	9	111625022	111625022	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006687.2	+1	reviewed	p.I140	0.210	193	0%	308	32.5%	0	-	-	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
TXNDC8	255220	genome.wustl.edu	37	9	113065829	113065829	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000374511	-1	known	p.L119S	0.930	128	0%	92	29.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SLC31A2	1318	genome.wustl.edu	37	9	115923930	115923930	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001860.2	+1	validated	p.G72V	0.012	94	0%	142	25.4%	8	37.5%	benign(0.055)	tolerated(0.39)	neutral(0.019)	HMMPfam_Ctr
COL27A1	85301	genome.wustl.edu	37	9	117063395	117063395	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032888.2	+1	validated	p.S1582L	0.512	120	0.8%	121	31.4%	13	61.5%	possibly_damaging(0.563)	tolerated(0.24)	neutral(0.230)	HMMPfam_Collagen
TRIM32	22954	genome.wustl.edu	37	9	119460232	119460232	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099679.1	+1	reviewed	p.T71A	1.000	125	0%	196	31.1%	6	33.3%	benign(0.026)	tolerated(0.61)	neutral(0.005)	superfamily_SSF57850
DBC1	1620	genome.wustl.edu	37	9	122004459	122004459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014618.2	-1	validated	p.R149C	1.000	228	0.4%	212	31.1%	0	-	possibly_damaging(0.938)	deleterious(0)	deleterious(0.828)	HMMSmart_SM00457
OR1J4	26219	genome.wustl.edu	37	9	125282194	125282194	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004452.1	+1	provisional	p.Y259H	0.437	438	0%	521	31.1%	0	-	possibly_damaging(0.943)	deleterious(0.02)	deleterious(0.770)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR5C1	392391	genome.wustl.edu	37	9	125551241	125551241	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001923.1	+1	provisional	p.A10	0.002	138	0%	165	35.2%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
OLFML2A	169611	genome.wustl.edu	37	9	127572088	127572088	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182487.2	+1	validated	p.G452	1.000	71	0%	128	30.5%	1	0%	-	-	-	HMMPfam_OLF,HMMSmart_SM00284
PBX3	5090	genome.wustl.edu	37	9	128723071	128723071	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006195.5	+1	validated	p.A318T	1.000	61	0%	118	29.7%	7	57.1%	benign(0.001)	tolerated(0.23)	neutral(0.042)	NULL
ZNF79	7633	genome.wustl.edu	37	9	130191185	130191185	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007135.2	+1	validated	p.T31A	0.014	146	0%	154	35.1%	2	0%	benign(0.388)	tolerated(0.25)	neutral(0.161)	superfamily_Krueppel-associated_box
STXBP1	6812	genome.wustl.edu	37	9	130427551	130427551	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003165.3	+1	reviewed	p.A202T	1.000	155	0%	208	17.3%	1	0%	benign(0.036)	deleterious(0.04)	neutral(0.351)	HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins
TTC16	158248	genome.wustl.edu	37	9	130493403	130493403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144965.1	+1	provisional	p.R781W	0.002	37	0%	30	33.3%	0	-	benign(0.021)	deleterious(0)	neutral(0.446)	NULL
ST6GALNAC4	27090	genome.wustl.edu	37	9	130676980	130676980	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175039.3	-1	reviewed	p.P51	0.013	65	1.5%	69	29%	21	38%	-	-	-	HMMPfam_Glyco_transf_29
TRUB2	26995	genome.wustl.edu	37	9	131076118	131076118	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015679.1	-1	provisional	p.E143D	0.020	125	0%	216	13.4%	67	19.4%	benign(0.005)	tolerated(0.56)	neutral(0.006)	HMMPfam_TruB_N,superfamily_PsdUridine_synth_cat_dom
SPTAN1	6709	genome.wustl.edu	37	9	131346789	131346789	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130438.1	+1	validated	p.A808T	0.994	117	0%	150	31.3%	16	12.5%	benign(0)	tolerated(0.36)	neutral(0.020)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
LRRC8A	56262	genome.wustl.edu	37	9	131671439	131671439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127244.1	+1	reviewed	p.R666C	1.000	166	0%	315	29.5%	54	48.1%	benign(0.016)	tolerated(0.07)	neutral(0.320)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like
SH3GLB2	56904	genome.wustl.edu	37	9	131784632	131784632	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020145.2	-1	provisional	p.R45Q	1.000	187	0%	267	32.2%	85	51.7%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_BAR,HMMSmart_SM00721
TOR1B	27348	genome.wustl.edu	37	9	132569566	132569566	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014506.1	+1	provisional	p.A189T	1.000	298	0%	449	34.5%	27	37%	benign(0.047)	tolerated(0.08)	neutral(0.303)	HMMSmart_AAA,HMMPfam_Torsin,superfamily_SSF52540
USP20	10868	genome.wustl.edu	37	9	132636941	132636941	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008563.3	+1	validated	p.G609	0.431	97	0%	138	35.5%	13	46.1%	-	-	-	HMMPfam_UCH,superfamily_SSF54001
PRRC2B	84726	genome.wustl.edu	37	9	134366901	134366901	+	Silent	SNP	C	C	T	rs183938437	by1000genomes	TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000320547	+1	known	p.R112C	0.796	31	0%	32	28.1%	28	57.1%	-	-	-	NULL
TTF1	7270	genome.wustl.edu	37	9	135277149	135277149	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007344.2	-1	validated	p.E354K	0.000	264	0%	220	29.1%	7	57.1%	benign(0.273)	deleterious(0.03)	neutral(0.394)	NULL
TSC1	7248	genome.wustl.edu	37	9	135779130	135779130	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000368.4	-1	reviewed	p.R706C	1.000	137	0%	192	32.3%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hamartin
TSC1	7248	genome.wustl.edu	37	9	135802658	135802658	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000368.4	-1	reviewed	p.D47G	1.000	362	0%	417	30.2%	6	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hamartin
GFI1B	8328	genome.wustl.edu	37	9	135865264	135865264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004188.4	+1	validated	p.D262N	1.000	106	0%	156	34%	0	-	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
RALGDS	5900	genome.wustl.edu	37	9	135985812	135985812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006266.2	-1	validated	p.T120M	0.998	147	0%	148	12.8%	29	10.3%	unknown(0)	deleterious(0)	-	HMMPfam_RasGEF_N,HMMSmart_SM00229,superfamily_Ras GEF
ADAMTS13	11093	genome.wustl.edu	37	9	136320410	136320410	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139025.3	+1	reviewed	p.S1085A	1.000	66	0%	58	31%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
MRPS2	51116	genome.wustl.edu	37	9	138395466	138395466	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016034.3	+1	reviewed	p.Q126	1.000	92	0%	72	37.5%	122	53.2%	-	-	-	HMMPfam_Ribosomal_S2,superfamily_Ribosomal_S2
UBAC1	10422	genome.wustl.edu	37	9	138847229	138847229	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016172.2	-1	validated	p.S57	0.690	218	0%	283	36.7%	29	58.6%	-	-	-	superfamily_SSF54236
PMPCA	23203	genome.wustl.edu	37	9	139310872	139310872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000446975	+1	known	p.R221H	0.000	58	0%	75	22.7%	5	60%	-	-	-	NULL
FAM69B	138311	genome.wustl.edu	37	9	139617906	139617906	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152421.3	+1	validated	p.R326C	1.000	14	0%	12	50%	3	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
LCN10	414332	genome.wustl.edu	37	9	139635702	139635702	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001712.2	-1	validated	e3+2	0.000	74	0%	84	34.5%	0	-	-	-	-	-
C9orf86	55684	genome.wustl.edu	37	9	139726267	139726267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024718.4	+1	validated	p.V185I	1.000	98	0%	114	38.6%	115	43.4%	unknown(0)	deleterious(0.03)	-	HMMSmart_SM00175,superfamily_P-loop containing nucleoside triphosphate hydrolases
RNF208	727800	genome.wustl.edu	37	9	140115175	140115175	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031297.3	-1	validated	p.H164Y	1.000	60	0%	98	30.6%	76	44.7%	possibly_damaging(0.891)	deleterious(0)	deleterious(0.795)	HMMSmart_RING,PatternScan_ZF_RING_1,superfamily_SSF57850
NOXA1	10811	genome.wustl.edu	37	9	140323441	140323441	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006647.1	+1	provisional	p.G159	0.004	29	0%	31	32.3%	26	30.7%	-	-	-	superfamily_SSF48452
PNPLA7	375775	genome.wustl.edu	37	9	140392579	140392579	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098537.1	-1	validated	p.R626*	0.997	113	0%	146	33.6%	0	-	-	-	-	HMMPfam_cNMP_binding,HMMSmart_SM00100,superfamily_cAMP-binding domain-like
CACNA1B	774	genome.wustl.edu	37	9	141012499	141012499	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000718.2	+1	validated	p.S1960Y	0.989	46	0%	58	34.5%	0	-	probably_damaging(0.991)	tolerated(1)	neutral(0.444)	NULL
AKR1CL1	340811	genome.wustl.edu	37	10	5202088	5202088	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000380510	-1	known	p.C169	1.000	37	0%	32	28.1%	0	-	-	-	-	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase
ASB13	79754	genome.wustl.edu	37	10	5683815	5683815	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024701.3	-1	reviewed	p.Y209	0.197	148	0%	202	30.2%	5	40%	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
ITIH5	80760	genome.wustl.edu	37	10	7679251	7679251	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030569.5	-1	validated	p.A198T	0.000	56	0%	38	23.7%	27	44.4%	benign(0)	tolerated(0.39)	neutral(0.016)	NULL
SEC61A2	55176	genome.wustl.edu	37	10	12211296	12211296	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142627.1	+1	reviewed	p.R428	0.000	310	0%	360	36.7%	2	50%	-	-	-	HMMPfam_SecY
DCLRE1C	64421	genome.wustl.edu	37	10	14950425	14950425	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033855.1	-1	reviewed	p.C687	0.024	275	0%	180	12.2%	3	33.3%	-	-	-	NULL
DNAJC1	64215	genome.wustl.edu	37	10	22048490	22048490	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022365.3	-1	provisional	p.T402M	0.000	45	0%	58	24.1%	61	49.1%	possibly_damaging(0.736)	tolerated(0.12)	deleterious(0.530)	NULL
THNSL1	79896	genome.wustl.edu	37	10	25312886	25312886	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024838.4	+1	validated	p.K245M	0.439	459	0.2%	467	32.5%	3	100%	possibly_damaging(0.46)	deleterious(0)	deleterious(0.596)	NULL
THNSL1	79896	genome.wustl.edu	37	10	25313607	25313607	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024838.4	+1	validated	p.S485	0.948	168	0%	123	29.3%	7	28.5%	-	-	-	HMMPfam_PALP,superfamily_Tryptophan synthase beta subunit-like PLP-dependent enzymes
GPR158	57512	genome.wustl.edu	37	10	25887865	25887865	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020752.2	+1	validated	p.G1104R	0.000	109	0%	127	31.5%	0	-	benign(0.086)	deleterious(0.03)	neutral(0.371)	NULL
MPP7	143098	genome.wustl.edu	37	10	28358713	28358713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173496.3	-1	validated	p.V398M	0.998	158	0%	164	38.4%	8	50%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMSmart_GuKc,superfamily_SSF52540
WAC	51322	genome.wustl.edu	37	10	28879710	28879710	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016628.3	+1	reviewed	p.Y187N	1.000	186	0%	220	26.4%	39	53.8%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
MAP3K8	1326	genome.wustl.edu	37	10	30748327	30748327	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005204.2	+1	reviewed	p.P390	0.841	105	0%	155	32.9%	18	55.5%	-	-	-	superfamily_Protein kinase-like (PK-like)
PARD3	56288	genome.wustl.edu	37	10	34400255	34400255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019619.3	-1	validated	p.E1305K	1.000	94	0%	58	25.9%	47	40.4%	benign(0.2)	tolerated(0.33)	neutral(0.043)	NULL
CUL2	8453	genome.wustl.edu	37	10	35305275	35305275	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003591.2	-1	provisional	p.T578A	1.000	397	0%	510	27.8%	38	39.4%	benign(0.311)	tolerated(0.34)	neutral(0.120)	HMMPfam_Cullin,superfamily_Cullin homology domain
ANKRD30A	91074	genome.wustl.edu	37	10	37422958	37422958	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052997.2	+1	validated	p.Y188	0.226	516	0%	652	30.1%	0	-	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
ANKRD30A	91074	genome.wustl.edu	37	10	37430708	37430708	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052997.2	+1	validated	p.A239T	0.001	107	0%	103	31.1%	0	-	possibly_damaging(0.936)	tolerated(0.09)	deleterious(0.678)	NULL
C10orf25	220979	genome.wustl.edu	37	10	45496288	45496288	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039380.2	-1	validated	p.E7G	0.005	63	0%	39	35.9%	0	-	benign(0.35)	-	-	NULL
ZFAND4	93550	genome.wustl.edu	37	10	46121736	46121736	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128324.1	-1	validated	p.V512A	0.497	127	0%	101	38.6%	4	25%	benign(0.035)	deleterious(0)	neutral(0.447)	NULL
ASAH2C	653365	genome.wustl.edu	37	10	48029279	48029279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000426610	-1	known	p.R203C	0.781	149	0%	142	31.7%	0	-	benign(0.181)	tolerated(0.18)	neutral(0.073)	HMMPfam_Ceramidase_alk
FRMPD2	143162	genome.wustl.edu	37	10	49452828	49452828	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001018071.3	-1	reviewed	p.Q125R	1.000	231	0%	222	30.2%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00750
ARHGAP22	58504	genome.wustl.edu	37	10	49654639	49654639	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021226.2	-1	validated	p.L631P	0.694	533	0%	722	31%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
VSTM4	196740	genome.wustl.edu	37	10	50315797	50315797	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031746.3	-1	validated	p.R100H	0.671	61	0%	48	31.2%	0	-	benign(0.001)	tolerated(0.14)	neutral(0.249)	HMMSmart_SM00409,superfamily_Immunoglobulin
OGDHL	55753	genome.wustl.edu	37	10	50953486	50953486	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018245.2	-1	validated	p.P511	0.029	195	0%	240	26.7%	8	62.5%	-	-	-	HMMPfam_E1_dh,superfamily_SSF52518
OGDHL	55753	genome.wustl.edu	37	10	50964887	50964887	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018245.2	-1	validated	p.R104W	0.594	122	0%	144	29.2%	2	0%	possibly_damaging(0.893)	tolerated(0.18)	neutral(0.408)	NULL
PARG	8505	genome.wustl.edu	37	10	51362989	51362989	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003631.2	-1	reviewed	p.G361	0.978	466	0.6%	550	28.4%	1	0%	-	-	-	NULL
ASAH2	56624	genome.wustl.edu	37	10	51974562	51974562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019893.2	-1	validated	p.R361C	0.070	139	0%	143	25.9%	0	-	possibly_damaging(0.509)	tolerated(0.18)	neutral(0.227)	HMMPfam_Ceramidase_alk
CSTF2T	23283	genome.wustl.edu	37	10	53457707	53457707	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015235.2	-1	validated	p.G535R	0.790	406	0%	557	30.3%	11	54.5%	unknown(0)	tolerated(0.06)	-	NULL
DKK1	22943	genome.wustl.edu	37	10	54074415	54074415	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012242.2	+1	reviewed	p.Y74C	0.997	16	0%	22	27.3%	77	45.4%	possibly_damaging(0.91)	tolerated(0.14)	deleterious(0.612)	NULL
BICC1	80114	genome.wustl.edu	37	10	60558828	60558828	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080512.1	+1	reviewed	p.I514T	0.994	145	0%	133	31.6%	1	0%	benign(0.005)	deleterious(0.01)	neutral(0.406)	NULL
BICC1	80114	genome.wustl.edu	37	10	60566788	60566788	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080512.1	+1	reviewed	p.T749M	1.000	126	0.8%	135	31.1%	5	60%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
ARID5B	84159	genome.wustl.edu	37	10	63759857	63759857	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032199.2	+1	validated	p.D170	0.982	78	0%	49	36.7%	2	50%	-	-	-	NULL
SIRT1	23411	genome.wustl.edu	37	10	69676200	69676200	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142498.1	+1	reviewed	p.F403	1.000	286	0%	343	33.5%	6	33.3%	-	-	-	NULL
ATOH7	220202	genome.wustl.edu	37	10	69991035	69991035	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145178.2	-1	validated	p.E134Q	0.928	27	0%	19	47.4%	0	-	possibly_damaging(0.807)	tolerated(0.43)	neutral(0.318)	NULL
TET1	80312	genome.wustl.edu	37	10	70451156	70451156	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030625.2	+1	validated	p.H1999L	1.000	189	0%	246	32.9%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
NODAL	4838	genome.wustl.edu	37	10	72195098	72195098	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018055.4	-1	reviewed	p.E279K	0.997	93	0%	101	41.6%	0	-	possibly_damaging(0.903)	tolerated(0.65)	neutral(0.361)	HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1,superfamily_SSF57501
CDH23	64072	genome.wustl.edu	37	10	73491989	73491989	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022124.5	+1	reviewed	p.A1321T	0.739	118	0%	155	27.1%	0	-	benign(0.003)	tolerated(0.51)	neutral(0.009)	HMMPfam_Cadherin,superfamily_Cadherin-like
TTC18	118491	genome.wustl.edu	37	10	75095219	75095219	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145170.3	-1	validated	p.R286C	1.000	356	0%	448	30.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
USP54	159195	genome.wustl.edu	37	10	75279711	75279711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152586.3	-1	provisional	p.T841M	1.000	189	0%	166	38.6%	10	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SYNPO2L	79933	genome.wustl.edu	37	10	75408402	75408402	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114133.1	-1	validated	p.D336	0.998	53	0%	45	22.2%	0	-	-	-	-	NULL
PLAU	5328	genome.wustl.edu	37	10	75675123	75675123	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002658.3	+1	reviewed	p.A362V	1.000	152	0%	167	39.5%	208	51.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
KAT6B	23522	genome.wustl.edu	37	10	76735730	76735730	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012330.2	+1	validated	p.D545	1.000	224	0%	195	30.8%	0	-	-	-	-	NULL
DLG5	9231	genome.wustl.edu	37	10	79588739	79588739	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004747.3	-1	reviewed	p.S730	0.896	24	0%	35	34.3%	20	15%	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
ZMIZ1	57178	genome.wustl.edu	37	10	81049608	81049608	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020338.3	+1	validated	p.T168S	1.000	135	0%	165	32.1%	14	42.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SFTPA2	729238	genome.wustl.edu	37	10	81317029	81317029	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098668.2	-1	reviewed	p.Y228C	1.000	277	0%	329	27.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like,PatternScan_C_TYPE_LECTIN_1
LRIT1	26103	genome.wustl.edu	37	10	85997013	85997013	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015613.2	-1	validated	p.G184	0.001	31	0%	35	31.4%	0	-	-	-	-	superfamily_SSF52058
LDB3	11155	genome.wustl.edu	37	10	88478489	88478489	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007078.2	+1	reviewed	p.V621	1.000	78	0%	119	31.1%	0	-	-	-	-	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
SNCG	6623	genome.wustl.edu	37	10	88718570	88718570	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003087.2	+1	reviewed	p.Y39C	1.000	237	0%	584	12.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Synuclein
RPP30	10556	genome.wustl.edu	37	10	92635816	92635816	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001104546.1	+1	validated	p.L77	0.714	489	0%	450	31.8%	17	41.1%	-	-	-	HMMPfam_RNase_P_p30,superfamily_PHP domain-like
BTAF1	9044	genome.wustl.edu	37	10	93767940	93767940	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003972.2	+1	validated	p.R1241*	1.000	151	0%	156	28.8%	5	40%	-	-	-	superfamily_ARM repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases
LGI1	9211	genome.wustl.edu	37	10	95549870	95549870	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005097.2	+1	reviewed	p.N149I	1.000	132	0%	118	30.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
CYP2C18	1562	genome.wustl.edu	37	10	96466679	96466679	+	Missense_Mutation	SNP	C	C	T	rs184571563	by1000genomes	TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000772.2	+1	reviewed	p.R261W	0.948	261	0%	221	33.5%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_p450,superfamily_Cytochrome P450
SLIT1	6585	genome.wustl.edu	37	10	98763898	98763898	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003061.2	-1	validated	p.G1264	0.001	222	0%	286	30.1%	0	-	-	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
SLIT1	6585	genome.wustl.edu	37	10	98763958	98763958	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003061.2	-1	validated	p.G1244	0.997	150	0%	197	33.5%	0	-	-	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
LOXL4	84171	genome.wustl.edu	37	10	100016617	100016617	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032211.6	-1	reviewed	p.C450R	1.000	74	0%	115	35.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
ABCC2	1244	genome.wustl.edu	37	10	101610401	101610401	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000392.3	+1	reviewed	p.L1452	0.982	71	0%	80	28.7%	0	-	-	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
LZTS2	84445	genome.wustl.edu	37	10	102766459	102766459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032429.1	+1	provisional	p.R515Q	1.000	22	0%	24	45.8%	56	48.2%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Fez1
SFXN3	81855	genome.wustl.edu	37	10	102798401	102798401	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030971.3	+1	validated	p.R262H	1.000	687	0%	920	29.2%	13	23%	possibly_damaging(0.908)	tolerated(0.08)	deleterious(0.661)	HMMPfam_Mtc
HPS6	79803	genome.wustl.edu	37	10	103826154	103826154	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024747.4	+1	reviewed	p.P308H	0.026	59	1.7%	61	27.9%	17	47%	probably_damaging(0.971)	tolerated(0.13)	deleterious(0.665)	NULL
GBF1	8729	genome.wustl.edu	37	10	104129687	104129687	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004193.1	+1	provisional	p.R1094	1.000	261	0%	264	27.3%	15	60%	-	-	-	NULL
CALHM3	119395	genome.wustl.edu	37	10	105233042	105233042	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001129742.1	-1	validated	p.C321	0.000	18	0%	23	21.7%	0	-	-	-	-	NULL
SLK	9748	genome.wustl.edu	37	10	105727517	105727517	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014720.2	+1	provisional	p.N5I	1.000	214	0%	330	33.6%	5	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CCDC147	159686	genome.wustl.edu	37	10	106207499	106207499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008723.1	+1	validated	p.R767H	1.000	52	0%	49	28.6%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
TCF7L2	6934	genome.wustl.edu	37	10	114910866	114910866	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030756.4	+1	reviewed	p.G306S	1.000	224	0%	253	34%	21	52.3%	benign(0)	tolerated(0.72)	neutral(0.002)	NULL
DCLRE1A	9937	genome.wustl.edu	37	10	115612493	115612493	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014881.3	-1	provisional	p.R150H	0.000	182	0%	247	35.2%	8	37.5%	possibly_damaging(0.56)	deleterious(0.02)	deleterious(0.574)	NULL
PNLIP	5406	genome.wustl.edu	37	10	118307929	118307929	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000936.2	+1	reviewed	p.T87A	1.000	305	0%	315	27.9%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases
INPP5F	22876	genome.wustl.edu	37	10	121556374	121556374	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014937.2	+1	reviewed	p.H273Y	1.000	213	0%	230	30%	2	100%	possibly_damaging(0.711)	tolerated(0.59)	neutral(0.262)	HMMPfam_Syja_N
FGFR2	2263	genome.wustl.edu	37	10	123246935	123246935	+	Missense_Mutation	SNP	G	G	A	rs113014479		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022970.3	-1	reviewed	p.R665W	1.000	158	0.6%	130	38.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
BTBD16	118663	genome.wustl.edu	37	10	124045761	124045761	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144587.2	+1	validated	p.R128Q	0.116	86	1.2%	74	28.4%	0	-	benign(0.012)	tolerated(0.4)	neutral(0.017)	superfamily_POZ domain
MKI67	4288	genome.wustl.edu	37	10	129913862	129913862	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002417.4	-1	reviewed	p.Y270	0.000	320	0%	296	27.4%	2	100%	-	-	-	NULL
GPR123	84435	genome.wustl.edu	37	10	134906544	134906544	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000392609	+1	known	p.P426	0.015	152	0%	197	29.4%	0	-	-	-	-	NULL
MTG1	92170	genome.wustl.edu	37	10	135232995	135232995	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138384.2	+1	validated	p.H255R	1.000	99	0%	166	30.1%	181	56.9%	benign(0.092)	tolerated(0.35)	neutral(0.028)	NULL
MTG1	92170	genome.wustl.edu	37	10	135233628	135233628	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138384.2	+1	validated	p.D322N	0.028	71	0%	84	42.9%	153	41.8%	probably_damaging(0.954)	tolerated(0.07)	deleterious(0.717)	NULL
PKP3	11187	genome.wustl.edu	37	11	403710	403710	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007183.2	+1	reviewed	p.L672	1.000	118	0%	129	33.3%	286	50%	-	-	-	superfamily_ARM-type_fold
PHRF1	57661	genome.wustl.edu	37	11	610285	610285	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020901.2	+1	validated	p.E1451K	0.239	55	0%	51	35.3%	63	33.3%	benign(0.326)	deleterious(0)	deleterious(0.546)	NULL
EPS8L2	64787	genome.wustl.edu	37	11	722523	722523	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022772.3	+1	reviewed	p.S394	0.482	62	0%	69	36.2%	242	56.6%	-	-	-	NULL
PNPLA2	57104	genome.wustl.edu	37	11	821676	821676	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020376.2	+1	provisional	p.R79Q	1.000	98	0%	112	25%	85	40%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_Patatin,superfamily_FabD/lysophospholipase-like
BRSK2	9024	genome.wustl.edu	37	11	1462146	1462146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003957.2	+1	validated	p.S134N	1.000	21	0%	49	30.6%	0	-	benign(0.001)	tolerated(0.17)	neutral(0.059)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
OR56A3	390083	genome.wustl.edu	37	11	5968641	5968641	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003443.2	+1	provisional	p.V22A	0.091	335	0%	351	32.2%	0	-	benign(0)	deleterious(0.03)	neutral(0.364)	superfamily_SSF81321
OR56A5	390084	genome.wustl.edu	37	11	5989351	5989351	+	Missense_Mutation	SNP	C	C	T	rs138339957	by1000genomes	TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343047.1	-1	model	p.R125H	1.000	141	0.7%	168	23.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
CCKBR	887	genome.wustl.edu	37	11	6281291	6281291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176875.2	+1	reviewed	p.R45C	1.000	14	0%	18	33.3%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	superfamily_Family A G protein-coupled receptor-like
HPX	3263	genome.wustl.edu	37	11	6458341	6458341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000613.2	-1	reviewed	p.C257Y	0.703	125	0%	160	16.9%	0	-	unknown(0)	tolerated(0.61)	-	superfamily_Hemopexin
TUB	7275	genome.wustl.edu	37	11	8123160	8123160	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003320.4	+1	reviewed	p.C560	0.801	111	0%	146	27.4%	0	-	-	-	-	superfamily_Tubby_C,PatternScan_TUB_2
ADM	133	genome.wustl.edu	37	11	10327552	10327552	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001124.1	+1	reviewed	p.Y52C	0.338	90	0%	111	32.4%	77	41.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Adrenomedullin
COPB1	1315	genome.wustl.edu	37	11	14490361	14490361	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144061.1	-1	reviewed	p.I671V	1.000	366	0%	429	30.8%	59	47.4%	benign(0.168)	tolerated(0.16)	neutral(0.074)	HMMPfam_Coatamer_beta_C
TPH1	7166	genome.wustl.edu	37	11	18062276	18062276	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004179.2	-1	reviewed	p.S12P	1.000	256	0%	306	25.5%	0	-	benign(0.001)	deleterious(0.05)	neutral(0.345)	superfamily_ACT-like
UEVLD	55293	genome.wustl.edu	37	11	18591820	18591820	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040697.1	-1	validated	p.G100R	1.000	290	0%	349	33.2%	7	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UEV,superfamily_UBC-like
IGSF22	283284	genome.wustl.edu	37	11	18745680	18745680	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173588.3	-1	validated	p.V35A	0.997	236	0%	328	31.1%	0	-	benign(0.366)	deleterious(0)	deleterious(0.561)	NULL
KCNA4	3739	genome.wustl.edu	37	11	30033087	30033087	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002233.2	-1	reviewed	p.V380A	0.998	89	0%	136	22.8%	0	-	benign(0.024)	tolerated(0.45)	neutral(0.013)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
PAX6	5080	genome.wustl.edu	37	11	31823250	31823250	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001604.4	-1	reviewed	p.G86	1.000	205	0%	246	29.7%	4	50%	-	-	-	HMMPfam_PAX,HMMSmart_PAX,superfamily_Homeodomain_like
HIPK3	10114	genome.wustl.edu	37	11	33370072	33370072	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005734.3	+1	validated	p.N792D	1.000	66	0%	48	27.1%	8	37.5%	probably_damaging(0.976)	tolerated(0.23)	neutral(0.459)	NULL
TRAF6	7189	genome.wustl.edu	37	11	36511743	36511743	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004620.2	-1	reviewed	p.N405S	1.000	270	0%	316	29.1%	10	70%	benign(0.044)	deleterious(0.04)	neutral(0.351)	HMMPfam_MATH,HMMSmart_MATH,superfamily_Traf_like
TSPAN18	90139	genome.wustl.edu	37	11	44941475	44941475	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130783.4	+1	validated	p.E180	0.662	129	0%	161	32.3%	0	-	-	-	-	superfamily_Tetraspanin,HMMPfam_Tetraspannin
PEX16	9409	genome.wustl.edu	37	11	45935952	45935952	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_057174.2	-1	reviewed	p.H203	0.000	46	0%	34	32.4%	74	41.8%	-	-	-	HMMPfam_Pex16
DGKZ	8525	genome.wustl.edu	37	11	46388203	46388203	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105540.1	+1	reviewed	p.A133T	0.001	25	0%	40	40%	1	0%	benign(0.005)	tolerated(0.27)	neutral(0.034)	NULL
ZNF408	79797	genome.wustl.edu	37	11	46724540	46724540	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024741.2	+1	validated	p.V133	1.000	195	0%	338	30.2%	7	71.4%	-	-	-	NULL
CELF1	10658	genome.wustl.edu	37	11	47504377	47504377	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025596.2	-1	reviewed	p.A186V	1.000	202	0%	210	32.4%	23	30.4%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	superfamily_RNA-binding domain RBD
ENSG00000205035	0	genome.wustl.edu	37	11	49830171	49830171	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000357667	+1	known	p.R366	0.113	88	0%	98	22.4%	0	-	-	-	-	NULL
OR4C12	283093	genome.wustl.edu	37	11	50003800	50003800	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005270.2	-1	validated	p.I80F	0.457	179	0%	152	36.2%	0	-	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	HMMPfam_7tm_1,superfamily_SSF81321
OR5D18	219438	genome.wustl.edu	37	11	55587280	55587280	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001952.1	+1	provisional	p.P59T	1.000	571	0.2%	645	30.9%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_7tm_1,superfamily_SSF81321
OR5J2	282775	genome.wustl.edu	37	11	55944764	55944764	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005492.1	+1	provisional	p.A224D	0.002	167	0%	145	26.2%	0	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	HMMPfam_7tm_1,superfamily_SSF81321
OR5M3	219482	genome.wustl.edu	37	11	56237725	56237725	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004742.1	-1	provisional	p.L83	0.002	261	0%	186	26.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ZDHHC5	25921	genome.wustl.edu	37	11	57461262	57461262	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015457.2	+1	validated	p.G254W	1.000	169	0%	185	31.9%	78	51.2%	probably_damaging(0.993)	deleterious(0.03)	deleterious(0.815)	NULL
OR10Q1	219960	genome.wustl.edu	37	11	57995729	57995729	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004471.2	-1	validated	p.V207M	0.946	68	0%	81	34.6%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_7tm_1,superfamily_SSF81321
FAM111A	63901	genome.wustl.edu	37	11	58920814	58920814	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142519.1	+1	validated	p.A558V	0.959	169	0%	181	31.5%	22	31.8%	possibly_damaging(0.578)	tolerated(0.86)	neutral(0.199)	superfamily_Pept_Ser_Cys
OR4D11	219986	genome.wustl.edu	37	11	59271785	59271785	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004706.1	+1	provisional	p.V246A	1.000	379	0%	534	33%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
MS4A10	341116	genome.wustl.edu	37	11	60567335	60567335	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206893.3	+1	validated	p.W253R	0.000	205	0%	263	30.4%	0	-	possibly_damaging(0.649)	deleterious(0)	deleterious(0.672)	NULL
ZP1	22917	genome.wustl.edu	37	11	60637254	60637254	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207341.2	+1	validated	p.S188N	0.134	166	0%	289	25.3%	0	-	benign(0.195)	deleterious(0.02)	neutral(0.402)	NULL
PRPF19	27339	genome.wustl.edu	37	11	60666753	60666753	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014502.4	-1	validated	p.P284	0.082	75	0%	99	27.3%	140	47.8%	-	-	-	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
PRPF19	27339	genome.wustl.edu	37	11	60668095	60668095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014502.4	-1	validated	p.H263N	1.000	289	0%	342	24.3%	125	23.2%	possibly_damaging(0.832)	deleterious(0)	deleterious(0.762)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
DDB1	1642	genome.wustl.edu	37	11	61094352	61094352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001923.3	-1	validated	p.R188Q	1.000	207	0%	187	33.2%	44	52.2%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
FADS1	3992	genome.wustl.edu	37	11	61574172	61574172	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013402.4	-1	reviewed	p.M314V	1.000	648	0%	1001	32.1%	6	33.3%	possibly_damaging(0.637)	deleterious(0.02)	deleterious(0.606)	HMMPfam_FA_desaturase
FADS1	3992	genome.wustl.edu	37	11	61578343	61578343	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013402.4	-1	reviewed	p.P265	0.070	236	0%	315	34.3%	8	12.5%	-	-	-	HMMPfam_FA_desaturase
AHNAK	79026	genome.wustl.edu	37	11	62295029	62295029	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001620.1	-1	validated	p.S2287N	0.003	419	0%	470	29.1%	6	33.3%	benign(0.002)	tolerated(1)	-	HMMPfam_CheC
INTS5	80789	genome.wustl.edu	37	11	62414856	62414856	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030628.1	-1	provisional	p.H899R	0.998	64	0%	74	24.3%	45	37.7%	benign(0)	tolerated(0.07)	neutral(0.319)	NULL
SLC22A10	387775	genome.wustl.edu	37	11	63067070	63067070	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039752.3	+1	validated	p.R347C	0.007	273	0%	240	35.8%	0	-	possibly_damaging(0.896)	tolerated(0.09)	deleterious(0.650)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
COX8A	1351	genome.wustl.edu	37	11	63743727	63743727	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004074.2	+1	reviewed	p.V49M	0.836	324	0.3%	437	28.1%	1332	45.2%	possibly_damaging(0.909)	deleterious(0.01)	deleterious(0.768)	HMMPfam_COX8,superfamily_Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)
GPR137	56834	genome.wustl.edu	37	11	64056551	64056551	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000377702	+1	known	p.I308	0.998	76	0%	68	30.9%	39	30.7%	unknown(0)	-	-	NULL
NRXN2	9379	genome.wustl.edu	37	11	64375017	64375017	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015080.2	-1	reviewed	p.R1597H	0.986	16	0%	13	46.2%	0	-	probably_damaging(0.986)	tolerated(0.14)	deleterious(0.684)	NULL
NRXN2	9379	genome.wustl.edu	37	11	64428341	64428341	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015080.2	-1	reviewed	p.T690M	0.979	41	0%	29	34.5%	0	-	possibly_damaging(0.942)	tolerated(0.14)	deleterious(0.637)	superfamily_Concanavalin A-like lectins/glucanases
SF1	7536	genome.wustl.edu	37	11	64537457	64537457	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004630.3	-1	reviewed	p.V153A	1.000	248	0%	271	39.5%	105	58%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
MAP4K2	5871	genome.wustl.edu	37	11	64559515	64559515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004579.2	-1	reviewed	p.P653L	0.979	25	0%	27	22.2%	23	39.1%	benign(0.02)	tolerated(1)	neutral(0.001)	HMMPfam_CNH,HMMSmart_CNH
DPF2	5977	genome.wustl.edu	37	11	65116351	65116351	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006268.3	+1	reviewed	p.R350C	1.000	378	0%	452	30.5%	44	43.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD
MAP3K11	4296	genome.wustl.edu	37	11	65375752	65375752	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002419.3	-1	reviewed	p.S303G	1.000	60	0%	74	24.3%	79	43%	probably_damaging(1)	tolerated(0.31)	deleterious(0.527)	HMMSmart_TyrKc,superfamily_Kinase_like,HMMPfam_Pkinase
GAL3ST3	89792	genome.wustl.edu	37	11	65810948	65810948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033036.2	-1	reviewed	p.R109H	1.000	21	0%	20	35%	0	-	benign(0.016)	tolerated(0.29)	neutral(0.030)	HMMPfam_Gal-3-0_sulfotr
SF3B2	10992	genome.wustl.edu	37	11	65826347	65826347	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006842.2	+1	reviewed	p.R338Q	0.997	104	0%	111	39.6%	53	54.7%	possibly_damaging(0.781)	tolerated(0.13)	deleterious(0.545)	NULL
RIN1	9610	genome.wustl.edu	37	11	66102870	66102870	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000434553	-1	known	p.L2F	0.050	84	0%	142	28.2%	0	-	-	-	-	NULL
SLC29A2	3177	genome.wustl.edu	37	11	66131701	66131701	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001532.2	-1	validated	p.A418	0.854	95	0%	132	40.2%	27	48.1%	-	-	-	HMMPfam_Nucleoside_tran
BBS1	582	genome.wustl.edu	37	11	66283012	66283012	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024649.4	+1	reviewed	p.D145G	1.000	153	0%	191	33%	18	22.2%	benign(0.038)	tolerated(0.7)	neutral(0.004)	NULL
CCS	9973	genome.wustl.edu	37	11	66373195	66373195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005125.1	+1	reviewed	p.R232C	1.000	123	0.8%	135	28.1%	58	22.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sod_Cu,superfamily_SOD_Cu_Zn
SPTBN2	6712	genome.wustl.edu	37	11	66455060	66455060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006946.2	-1	reviewed	p.R2187Q	0.018	44	0%	45	24.4%	53	47.1%	benign(0.064)	tolerated(0.57)	neutral(0.010)	HMMSmart_SM00150
PC	5091	genome.wustl.edu	37	11	66637839	66637839	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000920.3	-1	reviewed	p.P279	0.043	55	0%	57	47.4%	2	0%	-	-	-	HMMPfam_CPSase_L_D2,superfamily_SSF56059
RAD9A	5883	genome.wustl.edu	37	11	67160985	67160985	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004584.2	+1	reviewed	p.R85C	1.000	131	0%	165	29.7%	34	52.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Rad9,superfamily_DNA clamp
RPS6KB2	6199	genome.wustl.edu	37	11	67200453	67200453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003952.2	+1	reviewed	p.C216Y	1.000	43	0%	42	21.4%	78	52.5%	probably_damaging(0.994)	deleterious(0.04)	deleterious(0.801)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
ALDH3B2	222	genome.wustl.edu	37	11	67430749	67430749	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000695.3	-1	reviewed	p.Y365	0.000	140	0%	187	40.6%	23	43.4%	unknown(0)	-	-	NULL
SUV420H1	51111	genome.wustl.edu	37	11	67926281	67926281	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017635.3	-1	reviewed	p.R511I	0.986	257	0%	244	33.2%	5	60%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CPT1A	1374	genome.wustl.edu	37	11	68564342	68564342	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001876.3	-1	reviewed	p.N251	1.000	73	0%	89	27%	22	36.3%	-	-	-	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases
PPFIA1	8500	genome.wustl.edu	37	11	70194464	70194464	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003626.2	+1	reviewed	p.T701A	1.000	197	0%	251	39.4%	11	45.4%	possibly_damaging(0.949)	deleterious(0.01)	deleterious(0.798)	NULL
ARRB1	408	genome.wustl.edu	37	11	74980000	74980000	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004041.3	-1	validated	p.D342	0.556	196	0%	285	34.4%	6	33.3%	-	-	-	HMMPfam_Arrestin_C,superfamily_E set domains
MOGAT2	80168	genome.wustl.edu	37	11	75431190	75431190	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025098.2	+1	provisional	p.Y82C	1.000	307	0%	399	31.6%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_DAGAT
RSF1	51773	genome.wustl.edu	37	11	77388022	77388022	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016578.3	-1	validated	p.I1052	1.000	352	0%	262	24.4%	7	42.8%	-	-	-	NULL
GAB2	9846	genome.wustl.edu	37	11	77934595	77934595	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080491.2	-1	reviewed	p.I477N	1.000	316	0%	380	29.7%	1	0%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
ODZ4	26011	genome.wustl.edu	37	11	78369853	78369853	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098816.2	-1	validated	p.L2520	0.649	128	0%	141	36.2%	0	-	-	-	-	NULL
ODZ4	26011	genome.wustl.edu	37	11	78413244	78413244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098816.2	-1	validated	p.A1472T	1.000	149	0.7%	177	36.7%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_SSF101898,superfamily_TolB_C
CHORDC1	26973	genome.wustl.edu	37	11	89936592	89936592	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012124.2	-1	validated	p.K225E	1.000	201	0%	234	25.6%	16	50%	benign(0.018)	deleterious(0.05)	neutral(0.346)	NULL
FAT3	120114	genome.wustl.edu	37	11	92531306	92531306	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008781.2	+1	validated	p.D1709	0.066	154	0%	114	34.2%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
KIAA1731	85459	genome.wustl.edu	37	11	93462942	93462942	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033395.1	+1	validated	p.S2521Y	0.002	163	0%	112	28.6%	11	72.7%	benign(0.354)	deleterious(0)	deleterious(0.556)	NULL
FOLR4	390243	genome.wustl.edu	37	11	94039876	94039876	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000328458	+1	known	p.S112	0.015	118	0%	100	27%	0	-	-	-	-	HMMPfam_Folate_rec
CEP57	9702	genome.wustl.edu	37	11	95560970	95560970	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014679.3	+1	validated	p.A302	0.002	226	0%	224	33%	21	23.8%	-	-	-	HMMPfam_DUF1167
DYNC2H1	79659	genome.wustl.edu	37	11	102984957	102984957	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080463.1	+1	reviewed	p.D164	1.000	223	0%	188	30.9%	0	-	-	-	-	HMMPfam_DHC_N1
DYNC2H1	79659	genome.wustl.edu	37	11	103178561	103178561	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080463.1	+1	reviewed	e79+1	1.000	192	0.5%	186	32.3%	0	-	-	-	-	-
NPAT	4863	genome.wustl.edu	37	11	108060032	108060032	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002519.2	-1	validated	p.E119	1.000	326	0%	410	30.7%	3	33.3%	-	-	-	NULL
ATM	472	genome.wustl.edu	37	11	108121785	108121785	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000051.3	+1	reviewed	p.A531	0.987	213	0%	211	35.1%	0	-	-	-	-	superfamily_ARM repeat
ATM	472	genome.wustl.edu	37	11	108168036	108168036	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000051.3	+1	reviewed	p.M1644I	1.000	222	0%	246	28.5%	2	0%	benign(0)	tolerated(0.42)	neutral(0.014)	superfamily_ARM repeat
NCAM1	4684	genome.wustl.edu	37	11	113085170	113085170	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000401611	+1	known	p.S214	0.000	216	0%	255	29.8%	0	-	-	-	-	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
NCAM1	4684	genome.wustl.edu	37	11	113103490	113103490	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000401611	+1	known	p.V364	0.997	155	0%	197	29.9%	0	-	-	-	-	HMMSmart_IGc2,superfamily_SSF48726
REXO2	25996	genome.wustl.edu	37	11	114320588	114320588	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015523.3	+1	validated	p.E202G	1.000	369	0%	423	33.3%	81	45.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00479,superfamily_Ribonuclease H-like,HMMPfam_Exonuc_X-T
FAM55B	120406	genome.wustl.edu	37	11	114568999	114568999	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182495.5	+1	validated	p.T122M	0.000	660	0%	802	27.6%	0	-	benign(0.234)	tolerated(0.14)	neutral(0.273)	superfamily_E set domains
MLL	4297	genome.wustl.edu	37	11	118342585	118342585	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005933.2	+1	validated	p.H237	0.060	101	0%	119	29.4%	0	-	-	-	-	NULL
PHLDB1	23187	genome.wustl.edu	37	11	118498590	118498590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144758.1	+1	validated	p.R351W	0.998	24	0%	22	40.9%	6	33.3%	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	NULL
TREH	11181	genome.wustl.edu	37	11	118531435	118531435	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000264029	-1	known	p.R305	0.774	78	0%	105	19%	0	-	-	-	-	HMMPfam_Trehalase,superfamily_Six-hairpin glycosidases
HYOU1	10525	genome.wustl.edu	37	11	118923492	118923492	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130991.1	-1	reviewed	p.R282C	1.000	121	0%	137	29.2%	70	42.8%	benign(0.027)	deleterious(0.05)	neutral(0.347)	HMMPfam_HSP70,superfamily_Actin-like ATPase domain
VPS11	55823	genome.wustl.edu	37	11	118948275	118948275	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000300793	+1	known	p.G496V	1.000	209	0%	262	14.5%	21	19%	-	-	-	superfamily_ARM repeat
NLRX1	79671	genome.wustl.edu	37	11	119045218	119045218	+	Silent	SNP	C	C	T	rs191728935	by1000genomes	TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024618.2	+1	reviewed	p.Y302	0.008	156	0%	175	30.9%	8	62.5%	-	-	-	HMMPfam_NACHT
NLRX1	79671	genome.wustl.edu	37	11	119050572	119050572	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024618.2	+1	reviewed	p.P614	0.162	51	0%	33	33.3%	13	53.8%	-	-	-	NULL
CBL	867	genome.wustl.edu	37	11	119158653	119158653	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005188.2	+1	reviewed	p.A678D	1.000	511	0%	569	31.6%	0	-	possibly_damaging(0.906)	deleterious(0.01)	deleterious(0.765)	NULL
TRIM29	23650	genome.wustl.edu	37	11	120008361	120008361	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012101.3	-1	reviewed	p.L127V	0.944	42	0%	27	40.7%	26	61.5%	unknown(0)	-	-	NULL
TRIM29	23650	genome.wustl.edu	37	11	120008668	120008668	+	Silent	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012101.3	-1	reviewed	p.G24	0.688	23	0%	32	34.4%	27	44.4%	-	-	-	NULL
BLID	414899	genome.wustl.edu	37	11	121986546	121986546	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001786.2	-1	reviewed	p.I29V	0.000	113	0%	78	28.2%	0	-	unknown(0)	-	-	NULL
GRAMD1B	57476	genome.wustl.edu	37	11	123489387	123489387	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000322282	+1	known	e17-1	0.000	83	0%	107	12.1%	0	-	-	-	-	-
TMEM218	219854	genome.wustl.edu	37	11	124971136	124971136	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080546.1	-1	provisional	p.P58	0.945	133	0%	191	28.8%	13	46.1%	unknown(0)	-	-	NULL
ADAMTS8	11095	genome.wustl.edu	37	11	130286173	130286173	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007037.4	-1	reviewed	p.F383	0.888	65	0%	71	36.6%	1	100%	-	-	-	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
JAM3	83700	genome.wustl.edu	37	11	134018494	134018494	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032801.3	+1	reviewed	p.V300	0.002	151	0%	175	29.7%	3	0%	-	-	-	NULL
B3GAT1	27087	genome.wustl.edu	37	11	134252806	134252806	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018644.3	-1	reviewed	p.V239A	0.990	49	0%	51	35.3%	0	-	benign(0.013)	tolerated(0.09)	neutral(0.297)	HMMPfam_Glyco_transf_43,superfamily_SSF53448
SLC6A12	6539	genome.wustl.edu	37	12	302534	302534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122847.1	-1	validated	p.R480H	1.000	160	0%	193	27.5%	11	27.2%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_SNF
KDM5A	5927	genome.wustl.edu	37	12	463287	463287	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042603.1	-1	reviewed	p.P328	0.992	310	0.6%	337	26.1%	4	25%	-	-	-	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD
ERC1	23085	genome.wustl.edu	37	12	1346030	1346030	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178040.2	+1	reviewed	p.R816Q	0.999	274	0%	409	33%	3	66.6%	possibly_damaging(0.687)	tolerated(0.49)	neutral(0.256)	HMMPfam_Cast
TEAD4	7004	genome.wustl.edu	37	12	3104142	3104142	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003213.2	+1	reviewed	p.D70	0.601	75	0%	79	32.9%	36	41.6%	-	-	-	HMMPfam_TEA,HMMSmart_TEA
C12orf5	57103	genome.wustl.edu	37	12	4461522	4461522	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020375.2	+1	reviewed	p.N160H	0.027	193	0%	163	30.7%	19	52.6%	possibly_damaging(0.44)	tolerated(0.14)	neutral(0.393)	HMMPfam_PGAM,superfamily_SSF53254
FGF23	8074	genome.wustl.edu	37	12	4479909	4479909	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020638.2	-1	reviewed	p.T119M	0.017	20	0%	23	34.8%	0	-	possibly_damaging(0.842)	tolerated(0.21)	neutral(0.366)	HMMPfam_FGF,HMMSmart_FGF,superfamily_Cytok_IL1_like
KCNA1	3736	genome.wustl.edu	37	12	5021723	5021723	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000217.2	+1	reviewed	p.A393	1.000	85	0%	72	23.6%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
VWF	7450	genome.wustl.edu	37	12	6120864	6120864	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000552.3	-1	reviewed	p.R1921W	0.238	50	0%	62	38.7%	23	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
PLEKHG6	55200	genome.wustl.edu	37	12	6421468	6421468	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144856.1	+1	validated	p.R26W	0.193	89	0%	82	35.4%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PLEKHG6	55200	genome.wustl.edu	37	12	6427576	6427576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144856.1	+1	validated	p.R422Q	0.973	475	0%	860	32%	13	30.7%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
SCNN1A	6337	genome.wustl.edu	37	12	6471354	6471354	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001038.5	-1	reviewed	p.D246E	0.984	97	0%	135	25.2%	35	45.7%	benign(0.063)	tolerated(0.1)	neutral(0.290)	HMMPfam_ASC
NCAPD2	9918	genome.wustl.edu	37	12	6640213	6640213	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014865.3	+1	validated	p.V1364A	0.988	123	0%	126	24.6%	121	52%	possibly_damaging(0.665)	tolerated(0.62)	neutral(0.239)	NULL
NOP2	4839	genome.wustl.edu	37	12	6666419	6666419	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033714.1	-1	validated	p.T723A	0.000	194	0%	164	29.3%	123	42.2%	benign(0)	tolerated(0.32)	neutral(0.024)	NULL
LPAR5	57121	genome.wustl.edu	37	12	6729479	6729479	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142961.1	-1	reviewed	p.G312	0.002	21	0%	16	25%	5	40%	-	-	-	superfamily_Family A G protein-coupled receptor-like
C1RL	51279	genome.wustl.edu	37	12	7249440	7249440	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016546.2	-1	validated	p.S337	0.033	141	0%	171	40.4%	18	16.6%	-	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
CD163	9332	genome.wustl.edu	37	12	7656281	7656281	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004244.4	-1	validated	p.S2	0.001	358	0%	266	26.3%	0	-	-	-	-	NULL
MFAP5	8076	genome.wustl.edu	37	12	8804287	8804287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003480.2	-1	reviewed	p.A73V	0.763	254	0%	229	24.5%	2	50%	possibly_damaging(0.832)	tolerated(0.13)	deleterious(0.570)	HMMPfam_MAGP
CLEC1B	51266	genome.wustl.edu	37	12	10147683	10147683	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000428126	-1	known	p.D124G	0.013	103	0%	84	19%	0	-	benign(0.025)	tolerated(0.32)	neutral(0.025)	superfamily_C-type lectin-like
DUSP16	80824	genome.wustl.edu	37	12	12674030	12674030	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030640.2	-1	reviewed	p.M1I	1.000	447	0%	438	32.2%	0	-	unknown(0)	-	-	NULL
GRIN2B	2904	genome.wustl.edu	37	12	13717238	13717238	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000834.3	-1	reviewed	p.S978	1.000	185	0%	317	30.6%	0	-	-	-	-	HMMPfam_NMDAR2_C
H2AFJ	55766	genome.wustl.edu	37	12	14927761	14927761	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000228929	+1	known	e1+2	1.000	105	0%	180	30.6%	176	0%	-	-	-	-
WBP11	51729	genome.wustl.edu	37	12	14947559	14947559	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016312.2	-1	reviewed	p.V211	0.999	88	0%	139	16.5%	59	13.5%	-	-	-	NULL
GYS2	2998	genome.wustl.edu	37	12	21727230	21727230	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021957.3	-1	reviewed	p.V176I	0.934	284	0%	290	34.1%	0	-	benign(0)	tolerated(0.88)	-	HMMPfam_Glycogen_syn,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
LDHB	3945	genome.wustl.edu	37	12	21797012	21797012	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002300.6	-1	reviewed	p.V93A	1.000	201	0%	161	29.8%	320	39.3%	benign(0.12)	deleterious(0.03)	neutral(0.374)	HMMPfam_Ldh_1_N,superfamily_NAD(P)-binding Rossmann-fold domains
KIAA0528	9847	genome.wustl.edu	37	12	22643154	22643154	+	Splice_Site	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014802.1	-1	predicted	e11-2	0.997	146	0%	124	32.3%	0	-	-	-	-	-
LRMP	4033	genome.wustl.edu	37	12	25260873	25260873	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006152.2	+1	reviewed	p.G460D	0.998	218	0%	195	32.3%	3	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_MRVI1
KRAS	3845	genome.wustl.edu	37	12	25398281	25398281	+	Missense_Mutation	SNP	C	C	T	rs112445441	byCluster	TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033360.2	-1	reviewed	p.G13D	1.000	325	0%	346	28%	13	23%	benign(0.184)	deleterious(0)	neutral(0.462)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
ITPR2	3709	genome.wustl.edu	37	12	26775310	26775310	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002223.2	-1	validated	p.D1051N	1.000	288	0%	279	29.4%	1	100%	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	NULL
ASUN	55726	genome.wustl.edu	37	12	27087544	27087544	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018164.2	-1	validated	p.D82G	1.000	201	0%	215	31.6%	11	36.3%	possibly_damaging(0.566)	tolerated(0.07)	deleterious(0.512)	HMMPfam_DUF2151
ERGIC2	51290	genome.wustl.edu	37	12	29494149	29494149	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016570.2	-1	validated	p.V358	0.142	333	0%	369	29.3%	41	41.4%	possibly_damaging(0.903)	deleterious(0.01)	deleterious(0.764)	NULL
OVCH1	341350	genome.wustl.edu	37	12	29596323	29596323	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183378.2	-1	validated	p.E1043G	0.802	415	0%	323	31.6%	0	-	possibly_damaging(0.806)	tolerated(0.26)	neutral(0.338)	superfamily_Spermadhesin CUB domain
DENND5B	160518	genome.wustl.edu	37	12	31562305	31562305	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144973.3	-1	validated	p.R899*	1.000	138	0%	110	36.4%	0	-	-	-	-	HMMPfam_RUN,HMMSmart_SM00593
DNM1L	10059	genome.wustl.edu	37	12	32884055	32884055	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012062.3	+1	reviewed	p.I396S	1.000	455	0%	531	29.2%	37	43.2%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Dynamin_M
C12orf40	283461	genome.wustl.edu	37	12	40040227	40040227	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031748.2	+1	validated	p.V100A	0.001	181	0%	225	27.1%	0	-	possibly_damaging(0.636)	-	-	NULL
ADAMTS20	80070	genome.wustl.edu	37	12	43887030	43887030	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025003.3	-1	validated	p.S298	1.000	357	0%	367	31.9%	0	-	-	-	-	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
TMEM117	84216	genome.wustl.edu	37	12	44782202	44782202	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032256.1	+1	provisional	p.Y431C	1.000	295	0%	222	31.5%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
ANO6	196527	genome.wustl.edu	37	12	45797319	45797319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142679.1	+1	validated	p.P627L	1.000	124	0%	165	12.1%	16	6.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF590
FAM113B	91523	genome.wustl.edu	37	12	47629076	47629076	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138371.1	+1	predicted	p.R77H	0.998	95	0%	104	33.7%	17	47%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
MLL2	8085	genome.wustl.edu	37	12	49435215	49435215	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003482.3	-1	validated	p.L2113P	1.000	19	0%	25	36%	2	0%	unknown(0)	-	-	NULL
MLL2	8085	genome.wustl.edu	37	12	49438650	49438650	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003482.3	-1	validated	p.R1614W	1.000	166	0%	228	30.3%	0	-	unknown(0)	-	-	NULL
TUBA1A	7846	genome.wustl.edu	37	12	49579664	49579664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006009.2	-1	reviewed	p.G162D	1.000	231	0%	294	25.5%	67	1.4%	possibly_damaging(0.897)	deleterious(0)	deleterious(0.798)	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like
TROAP	10024	genome.wustl.edu	37	12	49722813	49722813	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005480.3	+1	validated	p.V332A	0.908	157	0%	143	31.5%	13	46.1%	possibly_damaging(0.888)	deleterious(0)	deleterious(0.792)	NULL
ASIC1	41	genome.wustl.edu	37	12	50475115	50475115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020039.2	+1	reviewed	p.V530M	1.000	28	0%	57	19.3%	1	0%	benign(0.051)	tolerated(0.11)	neutral(0.275)	NULL
LIMA1	51474	genome.wustl.edu	37	12	50571756	50571756	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113546.1	-1	validated	p.G458	1.000	465	0%	590	33.2%	71	40.8%	-	-	-	superfamily_Glucocorticoid receptor-like (DNA-binding domain)
FAM186A	121006	genome.wustl.edu	37	12	50749133	50749133	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145475.1	-1	provisional	p.Y494	0.000	240	0%	199	36.7%	0	-	-	-	-	NULL
KRT75	9119	genome.wustl.edu	37	12	52825420	52825420	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004693.2	-1	reviewed	p.D259	0.670	220	0%	273	35.2%	0	-	-	-	-	HMMPfam_Filament
PCBP2	5094	genome.wustl.edu	37	12	53858594	53858594	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005016.5	+1	reviewed	p.P214	1.000	138	0%	188	25.5%	582	42.9%	-	-	-	NULL
MAP3K12	7786	genome.wustl.edu	37	12	53875972	53875972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006301.2	-1	reviewed	p.R745H	1.000	329	0%	458	22.3%	3	0%	possibly_damaging(0.832)	tolerated(0.63)	neutral(0.321)	NULL
PPP1R1A	5502	genome.wustl.edu	37	12	54978106	54978106	+	Splice_Site	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006741.3	-1	validated	e2-2	1.000	174	0%	299	31.4%	0	-	-	-	-	-
PMEL	6490	genome.wustl.edu	37	12	56359746	56359746	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006928.3	-1	validated	p.A17D	0.917	490	0%	524	32.3%	0	-	unknown(0)	deleterious(0.05)	-	NULL
ANKRD52	283373	genome.wustl.edu	37	12	56648440	56648440	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173595.3	-1	validated	p.K205N	1.000	72	1.4%	78	15.4%	4	0%	benign(0.146)	tolerated(0.18)	neutral(0.069)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
PRIM1	5557	genome.wustl.edu	37	12	57127994	57127994	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000946.2	-1	reviewed	p.V394I	1.000	310	0%	263	27%	7	71.4%	benign(0.009)	tolerated(0.41)	neutral(0.015)	NULL
RDH16	8608	genome.wustl.edu	37	12	57346751	57346751	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003708.3	-1	validated	p.V199A	1.000	212	0%	231	32.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_NAD(P)-bd
LRP1	4035	genome.wustl.edu	37	12	57593699	57593699	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002332.2	+1	reviewed	p.S3302N	1.000	65	0%	55	41.8%	4	25%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_EGF,HMMSmart_SM00181,superfamily_EGF/Laminin
SRGAP1	57522	genome.wustl.edu	37	12	64491077	64491077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020762.2	+1	validated	p.V579I	1.000	194	0%	166	35.5%	3	33.3%	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
GNS	2799	genome.wustl.edu	37	12	65137014	65137014	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002076.3	-1	reviewed	p.A233	0.141	239	0%	338	35.2%	62	50%	-	-	-	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
CAND1	55832	genome.wustl.edu	37	12	67698914	67698914	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018448.3	+1	validated	p.S489I	1.000	211	0%	208	36.1%	31	45.1%	possibly_damaging(0.932)	deleterious(0.01)	deleterious(0.784)	superfamily_ARM repeat
NUP107	57122	genome.wustl.edu	37	12	69082803	69082803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020401.2	+1	reviewed	p.R24W	0.960	275	0%	363	33.1%	15	46.6%	benign(0.011)	deleterious(0)	neutral(0.445)	NULL
TBC1D15	64786	genome.wustl.edu	37	12	72311535	72311535	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022771.4	+1	reviewed	p.T504A	1.000	199	0%	210	26.7%	44	45.4%	benign(0.003)	tolerated(0.73)	neutral(0.002)	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
BBS10	79738	genome.wustl.edu	37	12	76742082	76742082	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024685.3	-1	reviewed	p.E19D	1.000	14	0%	32	18.8%	0	-	possibly_damaging(0.925)	tolerated(0.13)	deleterious(0.626)	superfamily_GroEL-ATPase
NAV3	89795	genome.wustl.edu	37	12	78574813	78574813	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014903.4	+1	validated	p.A1872T	0.999	167	0%	164	31.7%	0	-	benign(0)	tolerated(0.54)	neutral(0.007)	NULL
PTPRQ	374462	genome.wustl.edu	37	12	80899913	80899913	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000266688	+1	known	p.I795V	1.000	131	0%	99	28.3%	0	-	benign(0.08)	tolerated(0.45)	neutral(0.018)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PTPRQ	374462	genome.wustl.edu	37	12	81014089	81014089	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000266688	+1	known	p.A1849V	0.952	219	0%	219	34.2%	0	-	benign(0.323)	tolerated(0.18)	neutral(0.157)	NULL
TMTC3	160418	genome.wustl.edu	37	12	88547188	88547188	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181783.3	+1	reviewed	p.S104G	1.000	319	0%	345	31.6%	0	-	benign(0.063)	tolerated(0.07)	neutral(0.323)	NULL
VEZT	55591	genome.wustl.edu	37	12	95676358	95676358	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017599.3	+1	validated	p.E422	1.000	209	0%	203	29.1%	18	38.8%	-	-	-	NULL
NTN4	59277	genome.wustl.edu	37	12	96077487	96077487	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021229.3	-1	validated	p.P394L	0.021	68	0%	90	36.7%	62	53.2%	benign(0)	tolerated(0.18)	neutral(0.056)	PatternScan_EGF_LAM_1,superfamily_EGF/Laminin
PARPBP	55010	genome.wustl.edu	37	12	102569363	102569363	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017915.2	+1	predicted	p.D227E	1.000	387	0%	375	30.9%	1	0%	possibly_damaging(0.849)	tolerated(0.24)	neutral(0.363)	superfamily_P-loop containing nucleoside triphosphate hydrolases
STAB2	55576	genome.wustl.edu	37	12	104054116	104054116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017564.9	+1	reviewed	p.R581Q	1.000	455	0%	550	28.9%	0	-	probably_damaging(0.999)	tolerated(0.15)	deleterious(0.732)	HMMPfam_Fasciclin,HMMSmart_FAS1,superfamily_BIgH3_FAS1
STAB2	55576	genome.wustl.edu	37	12	104142879	104142879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017564.9	+1	reviewed	p.A2128V	0.998	58	0%	84	28.6%	0	-	probably_damaging(0.999)	tolerated(1)	deleterious(0.490)	HMMSmart_EGF,superfamily_SSF57196
PRDM4	11108	genome.wustl.edu	37	12	108147732	108147732	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012406.3	-1	reviewed	p.L100	1.000	297	0%	308	29.5%	5	40%	-	-	-	NULL
ASCL4	121549	genome.wustl.edu	37	12	108169004	108169004	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203436.2	+1	validated	p.T4	0.000	48	0%	66	18.2%	0	-	-	-	-	NULL
UNG	7374	genome.wustl.edu	37	12	109540673	109540673	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080911.1	+1	reviewed	p.T188I	0.990	265	0%	326	29.4%	31	38.7%	benign(0.012)	deleterious(0.01)	neutral(0.406)	HMMPfam_UDG,superfamily_DNA glycosylase
IFT81	28981	genome.wustl.edu	37	12	110630487	110630487	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143779.1	+1	validated	p.L511	0.999	181	0%	216	25.9%	10	60%	-	-	-	NULL
ATP2A2	488	genome.wustl.edu	37	12	110765425	110765425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170665.3	+1	reviewed	p.G233D	1.000	187	0%	212	37.3%	139	43.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_Calcium ATPase transmembrane domain M
ACAD10	80724	genome.wustl.edu	37	12	112193520	112193520	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136538.1	+1	reviewed	p.A1035T	1.000	150	0%	173	28.9%	13	61.5%	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	HMMPfam_Acyl-CoA_dh_1,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like
C12orf51	283450	genome.wustl.edu	37	12	112688837	112688837	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000311694	-1	known	p.D681G	0.987	376	0%	358	30.2%	0	-	-	-	-	NULL
C12orf51	283450	genome.wustl.edu	37	12	112708042	112708042	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001109662.2	-1	validated	p.V290I	1.000	266	0%	355	34.1%	2	50%	possibly_damaging(0.873)	-	-	NULL
TPCN1	53373	genome.wustl.edu	37	12	113726109	113726109	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000428632	+1	known	p.A592	0.000	34	0%	57	31.6%	1	100%	-	-	-	NULL
RNFT2	84900	genome.wustl.edu	37	12	117187732	117187732	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001109903.1	+1	validated	p.P57Q	0.978	24	0%	25	36%	1	100%	benign(0.006)	tolerated(0.27)	neutral(0.034)	NULL
FBXW8	26259	genome.wustl.edu	37	12	117465277	117465277	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153348.2	+1	reviewed	p.N540	0.671	121	0%	157	28.7%	10	40%	-	-	-	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
CABP1	9478	genome.wustl.edu	37	12	121098562	121098562	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033677.1	+1	reviewed	p.F286	1.000	392	0.3%	596	32%	0	-	-	-	-	superfamily_EF-hand
HNF1A	6927	genome.wustl.edu	37	12	121437163	121437163	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000545.5	+1	reviewed	p.A532T	0.974	41	0%	46	37%	9	77.7%	benign(0)	tolerated(1)	-	HMMPfam_HNF-1B_C
MORN3	283385	genome.wustl.edu	37	12	122097189	122097189	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173855.4	-1	validated	p.R71*	0.989	286	0.7%	354	32.5%	0	-	-	-	-	HMMPfam_MORN,HMMSmart_SM00698,superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
SETD1B	23067	genome.wustl.edu	37	12	122255164	122255164	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015048.1	+1	validated	p.L981M	0.832	74	0%	64	25%	9	11.1%	unknown(0)	-	-	NULL
SETD1B	23067	genome.wustl.edu	37	12	122265480	122265480	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015048.1	+1	validated	p.R1755H	1.000	44	0%	31	35.5%	19	52.6%	unknown(0)	-	-	NULL
DNAH10	196385	genome.wustl.edu	37	12	124268496	124268496	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207437.3	+1	validated	p.G273	0.006	252	0%	371	29.1%	0	-	-	-	-	HMMPfam_DHC_N1
NCOR2	9612	genome.wustl.edu	37	12	124817804	124817804	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006312.3	-1	validated	p.T2216	0.004	61	0%	80	12.5%	70	15.7%	-	-	-	NULL
NCOR2	9612	genome.wustl.edu	37	12	124819055	124819055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006312.3	-1	validated	p.R2181C	0.944	5	0.000	23	0.435	66	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TMEM132B	114795	genome.wustl.edu	37	12	126138737	126138737	+	Silent	SNP	C	C	T	rs183486128	by1000genomes	TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052907.2	+1	provisional	p.C906	0.266	89	0%	96	18.8%	0	-	-	-	-	NULL
FZD10	11211	genome.wustl.edu	37	12	130648775	130648775	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007197.2	+1	reviewed	p.G430C	1.000	264	0%	360	25%	55	60%	unknown(0)	-	-	HMMPfam_Frizzled
SFSWAP	6433	genome.wustl.edu	37	12	132283990	132283990	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004592.2	+1	reviewed	p.A938V	1.000	74	0%	107	34.6%	44	45.4%	unknown(0)	deleterious(0)	-	NULL
EP400	57634	genome.wustl.edu	37	12	132446033	132446033	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015409.3	+1	validated	p.R290L	0.953	35	0%	38	39.5%	3	100%	unknown(0)	-	-	NULL
EP400	57634	genome.wustl.edu	37	12	132466816	132466816	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015409.3	+1	validated	p.A573	0.000	48	0%	96	35.4%	6	66.6%	-	-	-	NULL
EP400	57634	genome.wustl.edu	37	12	132530005	132530005	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015409.3	+1	validated	p.V2308A	0.871	130	0%	174	31.6%	16	62.5%	unknown(0)	-	-	NULL
GOLGA3	2802	genome.wustl.edu	37	12	133350795	133350795	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005895.3	-1	reviewed	p.A1419T	0.809	86	0%	120	40.8%	12	66.6%	benign(0.1)	deleterious(0.03)	neutral(0.372)	NULL
ZNF140	7699	genome.wustl.edu	37	12	133682648	133682648	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003440.2	+1	validated	p.R262Q	0.968	84	0%	91	31.9%	16	62.5%	possibly_damaging(0.454)	tolerated(1)	neutral(0.148)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF268	10795	genome.wustl.edu	37	12	133779658	133779658	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003415.2	+1	validated	p.H462	0.830	216	0%	178	31.5%	12	50%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZMYM2	7750	genome.wustl.edu	37	13	20605500	20605500	+	Silent	SNP	G	G	A	rs183448364	by1000genomes	TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003453.2	+1	validated	p.A631	0.520	346	0%	366	31.4%	12	33.3%	-	-	-	HMMPfam_zf-FCS
EFHA1	221154	genome.wustl.edu	37	13	22084232	22084232	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152726.2	-1	validated	p.I224M	0.302	158	0%	113	30.1%	33	36.3%	benign(0.003)	tolerated(0.23)	neutral(0.042)	superfamily_SSF47473
TNFRSF19	55504	genome.wustl.edu	37	13	24234545	24234545	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018647.2	+1	reviewed	p.L218	1.000	94	0%	128	31.2%	3	0%	-	-	-	NULL
ATP12A	479	genome.wustl.edu	37	13	25281302	25281302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001676.5	+1	reviewed	p.A771T	1.000	229	0.4%	234	37.2%	0	-	possibly_damaging(0.769)	deleterious(0)	deleterious(0.730)	superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M
CENPJ	55835	genome.wustl.edu	37	13	25466935	25466935	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018451.3	-1	reviewed	p.H1021R	0.994	583	0%	656	29.3%	6	50%	possibly_damaging(0.455)	tolerated(0.38)	neutral(0.166)	NULL
ATP8A2	51761	genome.wustl.edu	37	13	26133118	26133118	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016529.4	+1	validated	p.Y424F	1.000	403	0%	430	33%	0	-	benign(0.353)	tolerated(0.08)	neutral(0.411)	superfamily_HAD-like
PAN3	255967	genome.wustl.edu	37	13	28854577	28854577	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175854.7	+1	validated	p.R540*	1.000	193	0%	237	30%	6	33.3%	-	-	-	superfamily_Kinase_like
SLC7A1	6541	genome.wustl.edu	37	13	30091818	30091818	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003045.4	-1	validated	p.F468L	1.000	396	0%	404	39.9%	18	50%	benign(0.055)	tolerated(0.81)	neutral(0.004)	NULL
FRY	10129	genome.wustl.edu	37	13	32783024	32783024	+	Missense_Mutation	SNP	C	C	T	rs187526864	by1000genomes	TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000261575	+1	known	p.R156W	0.766	74	1.4%	108	33.3%	0	-	benign(0.126)	deleterious(0.02)	neutral(0.394)	NULL
FRY	10129	genome.wustl.edu	37	13	32811625	32811625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023037.2	+1	validated	p.E1974K	1.000	114	0%	170	28.8%	0	-	benign(0.051)	tolerated(0.5)	neutral(0.013)	NULL
FRY	10129	genome.wustl.edu	37	13	32811950	32811950	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023037.2	+1	validated	p.R2082Q	1.000	80	0%	56	25%	1	0%	probably_damaging(0.973)	deleterious(0.03)	deleterious(0.779)	NULL
NBEA	26960	genome.wustl.edu	37	13	36229811	36229811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015678.4	+1	validated	p.G2742R	1.000	276	0%	316	31.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
POSTN	10631	genome.wustl.edu	37	13	38158993	38158993	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006475.2	-1	validated	p.T323M	1.000	500	0%	523	30%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Fasciclin,HMMSmart_SM00554,superfamily_FAS1 domain
PROSER1	80209	genome.wustl.edu	37	13	39602404	39602404	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025138.3	-1	validated	p.N110S	0.996	366	0%	310	36.1%	3	0%	benign(0.133)	deleterious(0.04)	neutral(0.360)	NULL
ELF1	1997	genome.wustl.edu	37	13	41517096	41517096	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172373.3	-1	reviewed	p.R266	1.000	219	0%	221	31.2%	26	57.6%	-	-	-	HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_2,superfamily_SSF46785
KIAA0564	23078	genome.wustl.edu	37	13	42393434	42393434	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015058.1	-1	validated	p.P597S	1.000	181	0%	150	38%	4	50%	benign(0.097)	tolerated(0.46)	neutral(0.019)	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
ENSG00000170919	0	genome.wustl.edu	37	13	45964995	45964995	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000379050	+1	known	p.G58	0.999	261	0.4%	279	29%	58	0%	-	-	-	NULL
FAM194B	220081	genome.wustl.edu	37	13	46170846	46170846	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182542.2	-1	predicted	p.E99K	0.177	1122	0%	1255	31.3%	0	-	unknown(0)	tolerated(0.72)	-	NULL
SIAH3	283514	genome.wustl.edu	37	13	46358020	46358020	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198849.2	-1	validated	p.T103M	0.741	55	0%	97	16.5%	0	-	benign(0.004)	deleterious(0.02)	neutral(0.383)	superfamily_Traf_like
LCP1	3936	genome.wustl.edu	37	13	46730636	46730636	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002298.4	-1	reviewed	p.V143A	1.000	601	0%	741	31.2%	15	0%	benign(0.13)	tolerated(0.13)	neutral(0.264)	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology,superfamily_SSF47473
SETDB2	83852	genome.wustl.edu	37	13	50062517	50062517	+	Silent	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031915.2	+1	validated	p.T568	0.020	130	0%	124	29%	2	50%	-	-	-	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
SERPINE3	647174	genome.wustl.edu	37	13	51921353	51921353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001101320.1	+1	validated	p.T228M	0.254	215	0%	289	27%	0	-	benign(0.002)	tolerated(0.16)	neutral(0.059)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
THSD1	55901	genome.wustl.edu	37	13	52951753	52951753	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018676.3	-1	reviewed	p.Y784	0.889	288	0%	307	25.4%	3	33.3%	-	-	-	NULL
LOC341689	341689	genome.wustl.edu	37	13	59103253	59103253	+	RNA	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_017487.3	+1	model	NULL	0.489	249	0%	280	29.6%	0	-	-	-	-	-
DIAPH3	81624	genome.wustl.edu	37	13	60348930	60348930	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042517.1	-1	validated	p.N1064I	1.000	192	0%	201	31.3%	12	33.3%	benign(0.004)	deleterious(0)	neutral(0.445)	HMMSmart_SM00498,HMMPfam_Drf_DAD
TDRD3	81550	genome.wustl.edu	37	13	61109311	61109311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030794.2	+1	validated	p.G595R	1.000	342	0%	312	30.8%	20	20%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_SM00333,HMMPfam_TUDOR,superfamily_Tudor/PWWP/MBT
LOC390407	390407	genome.wustl.edu	37	13	61211971	61211971	+	RNA	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_078475.1	-1	model	NULL	0.996	62	0%	83	26.5%	0	-	-	-	-	-
KLHL1	57626	genome.wustl.edu	37	13	70275877	70275877	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020866.2	-1	validated	p.I735T	1.000	106	0%	101	35.6%	0	-	benign(0)	tolerated(0.59)	neutral(0.004)	HMMSmart_SM00612,superfamily_Galactose oxidase central domain
LMO7	4008	genome.wustl.edu	37	13	76391343	76391343	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015842.2	+1	reviewed	p.R432C	1.000	385	0%	445	36.4%	27	48.1%	possibly_damaging(0.806)	deleterious(0.03)	deleterious(0.668)	NULL
LMO7	4008	genome.wustl.edu	37	13	76415900	76415900	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015842.2	+1	reviewed	p.R1038K	0.000	143	0%	188	33%	37	48.6%	benign(0.156)	tolerated(0.88)	neutral(0.014)	NULL
CLN5	1203	genome.wustl.edu	37	13	77574739	77574739	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006493.2	+1	reviewed	p.T287A	1.000	325	0%	335	28.1%	13	23%	probably_damaging(0.998)	tolerated(0.33)	deleterious(0.498)	NULL
MYCBP2	23077	genome.wustl.edu	37	13	77752058	77752058	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015057.4	-1	validated	p.K1684R	1.000	238	0%	229	30.6%	3	33.3%	possibly_damaging(0.942)	tolerated(0.49)	neutral(0.398)	NULL
SPRY2	10253	genome.wustl.edu	37	13	80911200	80911200	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005842.2	-1	reviewed	p.D214G	1.000	222	0%	287	33.4%	53	49%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMPfam_Sprouty
EFNB2	1948	genome.wustl.edu	37	13	107145465	107145465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004093.2	-1	reviewed	p.G309S	1.000	114	0%	173	36.4%	3	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ARGLU1	55082	genome.wustl.edu	37	13	107211766	107211766	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000426600	-1	known	p.R146H	1.000	247	0%	235	29.4%	11	36.3%	possibly_damaging(0.923)	deleterious(0)	deleterious(0.817)	NULL
MYO16	23026	genome.wustl.edu	37	13	109707840	109707840	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015011.1	+1	validated	p.F1056L	1.000	381	0%	294	30.3%	0	-	probably_damaging(0.998)	tolerated(0.09)	deleterious(0.771)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
COL4A2	1284	genome.wustl.edu	37	13	111117886	111117886	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001846.2	+1	reviewed	p.D637	0.037	58	0%	50	34%	71	29.5%	-	-	-	HMMPfam_Collagen
ARHGEF7	8874	genome.wustl.edu	37	13	111935593	111935593	+	Silent	SNP	G	G	A	rs61758711		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113511.1	+1	reviewed	p.P632	0.564	83	0%	113	38.1%	12	50%	-	-	-	NULL
ATP11A	23250	genome.wustl.edu	37	13	113470479	113470479	+	Missense_Mutation	SNP	C	C	T	rs189256530	by1000genomes	TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032189.3	+1	reviewed	p.T175M	1.000	100	0%	164	32.9%	15	46.6%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_Calcium ATPase transmembrane domain M
TFDP1	7027	genome.wustl.edu	37	13	114290379	114290379	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007111.4	+1	reviewed	p.L259	1.000	181	0%	247	31.2%	87	44.8%	-	-	-	HMMPfam_DP
OR4M1	441670	genome.wustl.edu	37	14	20249136	20249136	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005500.1	+1	provisional	p.A219T	0.026	973	0%	1107	14.5%	0	-	benign(0.086)	tolerated(0.61)	neutral(0.010)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR4M1	441670	genome.wustl.edu	37	14	20249319	20249319	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005500.1	+1	provisional	p.I280V	0.900	609	0%	672	18.6%	0	-	benign(0.142)	tolerated(0.29)	neutral(0.041)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR4L1	122742	genome.wustl.edu	37	14	20529054	20529054	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004717.1	+1	provisional	p.P284L	0.996	164	0%	100	44%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_7tm_1,superfamily_SSF81321
TEP1	7011	genome.wustl.edu	37	14	20841478	20841478	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007110.4	-1	reviewed	p.T2255	0.001	124	0%	158	29.1%	8	50%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
OSGEP	55644	genome.wustl.edu	37	14	20915618	20915618	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017807.2	-1	validated	p.H311Y	1.000	211	0%	228	32.5%	53	41.5%	benign(0)	tolerated(0.82)	neutral(0.001)	NULL
OR6S1	341799	genome.wustl.edu	37	14	21109531	21109531	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001968.1	-1	provisional	p.F107S	0.997	128	0%	188	30.9%	0	-	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMPfam_7tm_1,superfamily_SSF81321
RNASE4	6038	genome.wustl.edu	37	14	21167780	21167780	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002937.3	+1	reviewed	p.I84V	0.980	152	0%	178	32%	2	0%	possibly_damaging(0.94)	tolerated(1)	neutral(0.385)	HMMPfam_RnaseA,HMMSmart_SM00092,superfamily_RNase A-like
SUPT16H	11198	genome.wustl.edu	37	14	21836520	21836520	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007192.3	-1	reviewed	p.R288H	1.000	248	0%	257	32.3%	20	30%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_M24,superfamily_Peptidase_M24_cat_core
SALL2	6297	genome.wustl.edu	37	14	21992021	21992021	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005407.1	-1	validated	p.A614V	0.999	42	0%	55	27.3%	0	-	possibly_damaging(0.915)	deleterious(0)	deleterious(0.811)	NULL
TRAC	28755	genome.wustl.edu	37	14	22997531	22997531	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000446346	+1	known	p.V120A	0.026	443	0%	496	31.5%	6	0%	-	-	-	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
MYH6	4624	genome.wustl.edu	37	14	23854219	23854219	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002471.3	-1	validated	p.M1732K	1.000	296	0%	296	28.7%	0	-	benign(0.01)	deleterious(0.02)	neutral(0.384)	HMMPfam_Myosin_tail_1
MYH7	4625	genome.wustl.edu	37	14	23884884	23884884	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000257.2	-1	reviewed	p.Q1704R	1.000	112	0%	124	32.3%	3	66.6%	possibly_damaging(0.921)	tolerated(0.19)	neutral(0.420)	HMMPfam_Myosin_tail_1
PCK2	5106	genome.wustl.edu	37	14	24569206	24569206	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004563.2	+1	reviewed	p.R340*	0.999	112	0%	85	34.1%	30	3.3%	-	-	-	HMMPfam_PEPCK,superfamily_PEP carboxykinase-like
DCAF11	80344	genome.wustl.edu	37	14	24587663	24587663	+	Missense_Mutation	SNP	G	G	A	rs192332230	by1000genomes	TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025230.4	+1	reviewed	p.R215H	1.000	195	0%	202	29.7%	47	51%	possibly_damaging(0.922)	deleterious(0.02)	deleterious(0.754)	HMMSmart_SM00320,superfamily_WD40 repeat-like
ADCY4	196883	genome.wustl.edu	37	14	24792659	24792659	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139247.2	-1	reviewed	p.F683Y	1.000	144	0%	229	24.9%	2	0%	benign(0.15)	tolerated(0.05)	neutral(0.358)	NULL
NFATC4	4776	genome.wustl.edu	37	14	24846074	24846074	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136022.1	+1	reviewed	p.T940	0.997	75	0%	96	30.2%	14	21.4%	-	-	-	NULL
NYNRIN	57523	genome.wustl.edu	37	14	24884877	24884877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025081.2	+1	validated	p.V1308I	0.794	152	0%	184	37%	17	64.7%	benign(0.004)	tolerated(1)	-	superfamily_Ribonuclease H-like
ENSG00000197358	0	genome.wustl.edu	37	14	28734064	28734064	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000355069	+1	known	p.R102K	0.988	478	0%	610	29.5%	0	-	-	-	-	HMMPfam_BNIP3
SCFD1	23256	genome.wustl.edu	37	14	31107345	31107345	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016106.2	+1	validated	p.Q109	1.000	134	0%	118	37.3%	7	28.5%	-	-	-	HMMPfam_Sec1,superfamily_Sec1-like
HECTD1	25831	genome.wustl.edu	37	14	31619420	31619420	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015382.2	-1	validated	p.E647G	1.000	375	0%	412	32.5%	10	30%	possibly_damaging(0.799)	deleterious(0.02)	deleterious(0.684)	superfamily_ARM repeat
ARHGAP5	394	genome.wustl.edu	37	14	32623887	32623887	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001030055.1	+1	reviewed	p.W1414*	1.000	394	0%	310	25.2%	24	66.6%	-	-	-	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
PRPF39	55015	genome.wustl.edu	37	14	45571879	45571879	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017922.3	+1	validated	p.L239	0.816	322	0%	322	22.4%	10	10%	-	-	-	HMMSmart_SM00386,superfamily_TPR-like
C14orf183	196913	genome.wustl.edu	37	14	50551880	50551880	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014830.1	-1	provisional	p.S195F	0.007	227	0%	284	33.5%	0	-	unknown(0)	-	-	NULL
MAP4K5	11183	genome.wustl.edu	37	14	50929418	50929418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006575.3	-1	reviewed	p.A301T	0.998	569	0%	537	28.5%	15	26.6%	benign(0)	tolerated(0.39)	neutral(0.016)	superfamily_Protein kinase-like (PK-like)
PSMC6	5706	genome.wustl.edu	37	14	53185020	53185020	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002806.3	+1	reviewed	p.A236D	1.000	468	0%	558	34.1%	68	47%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
MUDENG	55745	genome.wustl.edu	37	14	57741283	57741283	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018229.3	+1	validated	p.F132	0.859	190	0%	163	37.4%	5	60%	-	-	-	NULL
ACTR10	55860	genome.wustl.edu	37	14	58698893	58698893	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018477.2	+1	validated	p.V327A	1.000	206	0%	251	38.6%	45	53.3%	possibly_damaging(0.783)	tolerated(0.26)	neutral(0.327)	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067
DHRS7	51635	genome.wustl.edu	37	14	60616122	60616122	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016029.2	-1	validated	p.W307*	0.994	341	0%	393	30.5%	24	16.6%	-	-	-	superfamily_NAD(P)-binding Rossmann-fold domains
KCNH5	27133	genome.wustl.edu	37	14	63174832	63174832	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139318.3	-1	reviewed	p.N787	0.957	286	0.3%	326	36.8%	0	-	-	-	-	NULL
KCNH5	27133	genome.wustl.edu	37	14	63316554	63316554	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139318.3	-1	reviewed	p.T462	1.000	318	0%	317	37.2%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SYNE2	23224	genome.wustl.edu	37	14	64519763	64519763	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182914.2	+1	reviewed	p.E3044	0.020	68	0%	49	36.7%	1	0%	-	-	-	NULL
MTHFD1	4522	genome.wustl.edu	37	14	64909120	64909120	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005956.3	+1	reviewed	p.T712	1.000	109	0%	103	28.2%	77	32.4%	-	-	-	HMMPfam_FTHFS,superfamily_P-loop containing nucleoside triphosphate hydrolases
HSPA2	3306	genome.wustl.edu	37	14	65007630	65007630	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021979.3	+1	validated	p.V21	0.991	68	0%	114	39.5%	0	-	-	-	-	HMMPfam_HSP70,superfamily_SSF53067
LOC100287214	100287214	genome.wustl.edu	37	14	65008347	65008347	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343281.1	-1	model	p.L283F	1.000	24	0%	21	28.6%	0	-	-	-	-	HMMPfam_NAD-GH
HSPA2	3306	genome.wustl.edu	37	14	65008693	65008693	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021979.3	+1	validated	p.A376T	1.000	33	0%	30	36.7%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HSP70,superfamily_SSF53067
PLEKHG3	26030	genome.wustl.edu	37	14	65205515	65205515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015549.1	+1	validated	p.R431Q	0.559	108	0%	96	36.5%	18	27.7%	benign(0.029)	tolerated(0.06)	neutral(0.324)	NULL
MAGOH3P	90352	genome.wustl.edu	37	14	69328484	69328484	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000398874	+1	known	p.V2	0.378	133	0%	116	37.9%	0	-	-	-	-	NULL
ACTN1	87	genome.wustl.edu	37	14	69349236	69349236	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130004.1	-1	reviewed	p.L631P	1.000	71	0%	101	23.8%	151	56.2%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Spectrin,superfamily_Spectrin
SLC39A9	55334	genome.wustl.edu	37	14	69908877	69908877	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018375.3	+1	validated	p.H99	0.990	489	0.2%	599	35.6%	14	42.8%	-	-	-	HMMPfam_Zip
SLC10A1	6554	genome.wustl.edu	37	14	70246040	70246040	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003049.3	-1	validated	p.V202D	0.013	140	0%	227	36.6%	0	-	possibly_damaging(0.691)	deleterious(0.01)	deleterious(0.653)	HMMPfam_SBF
VRTN	55237	genome.wustl.edu	37	14	74823592	74823592	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018228.2	+1	validated	p.Q36*	0.995	107	0%	125	31.2%	0	-	-	-	-	NULL
LTBP2	4053	genome.wustl.edu	37	14	74995782	74995782	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000428.2	-1	reviewed	p.S677	0.000	22	0%	50	42%	3	100%	-	-	-	superfamily_TB module/8-cys domain
KIAA0317	9870	genome.wustl.edu	37	14	75130721	75130721	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039479.1	-1	validated	p.R750	1.000	167	0%	246	32.5%	21	42.8%	-	-	-	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
MLH3	27030	genome.wustl.edu	37	14	75515443	75515443	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040108.1	-1	reviewed	p.Y306H	1.000	218	0%	246	36.6%	1	100%	unknown(0)	deleterious(0.01)	-	superfamily_Ribosomal protein S5 domain 2-like
KCNK10	54207	genome.wustl.edu	37	14	88729846	88729846	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138317.2	-1	reviewed	p.N34	1.000	34	0%	30	26.7%	0	-	-	-	-	NULL
FOXN3	1112	genome.wustl.edu	37	14	89628892	89628892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085471.1	-1	reviewed	p.E447K	1.000	320	0%	401	35.7%	4	50%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
TDP1	55775	genome.wustl.edu	37	14	90455264	90455264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008744.1	+1	reviewed	p.A383T	0.000	260	0%	293	30.7%	17	41.1%	benign(0)	tolerated(0.41)	neutral(0.015)	HMMPfam_Tyr-DNA_phospho,superfamily_SSF56024
C14orf102	55051	genome.wustl.edu	37	14	90744726	90744726	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017970.2	-1	validated	p.R1150Q	1.000	36	0%	43	34.9%	3	66.6%	unknown(0)	deleterious(0)	-	NULL
TTC7B	145567	genome.wustl.edu	37	14	91059868	91059868	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010854.1	-1	provisional	p.H690R	1.000	60	0%	96	36.5%	11	63.6%	benign(0.097)	tolerated(0.89)	neutral(0.007)	superfamily_TPR-like
TTC7B	145567	genome.wustl.edu	37	14	91211165	91211165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010854.1	-1	provisional	p.A183T	0.997	236	0.4%	230	20.9%	5	20%	benign(0.171)	tolerated(0.37)	neutral(0.035)	superfamily_TPR-like
GPR68	8111	genome.wustl.edu	37	14	91700997	91700997	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003485.3	-1	validated	p.R143Q	1.000	56	0%	62	29%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
CCDC88C	440193	genome.wustl.edu	37	14	91739859	91739859	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080414.2	-1	validated	p.V1733I	0.430	59	0%	97	22.7%	27	40.7%	benign(0.003)	tolerated(0.48)	neutral(0.011)	NULL
CCDC88C	440193	genome.wustl.edu	37	14	91780390	91780390	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080414.2	-1	validated	p.K590	0.944	338	0%	379	24.5%	11	54.5%	-	-	-	NULL
FBLN5	10516	genome.wustl.edu	37	14	92349335	92349335	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006329.3	-1	reviewed	p.P275	0.982	187	0%	232	28%	4	0%	-	-	-	HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_EGF/Laminin
GOLGA5	9950	genome.wustl.edu	37	14	93282615	93282615	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005113.2	+1	reviewed	p.N447S	0.979	94	0%	103	30.1%	24	33.3%	benign(0.04)	tolerated(0.41)	neutral(0.017)	superfamily_Prefoldin,HMMPfam_Golgin_A5
DDX24	57062	genome.wustl.edu	37	14	94527382	94527382	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020414.3	-1	reviewed	p.M425T	1.000	234	0%	159	31.4%	61	47.5%	benign(0.429)	deleterious(0)	deleterious(0.584)	HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540
BCL11B	64919	genome.wustl.edu	37	14	99640590	99640590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138576.2	-1	reviewed	p.M861I	1.000	112	0%	142	33.8%	1	0%	benign(0.278)	deleterious(0)	deleterious(0.475)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
HHIPL1	84439	genome.wustl.edu	37	14	100118931	100118931	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127258.1	+1	validated	p.F209S	1.000	40	0%	43	23.3%	0	-	possibly_damaging(0.879)	deleterious(0.03)	deleterious(0.707)	superfamily_Soluble quinoprotein glucose dehydrogenase
CYP46A1	10858	genome.wustl.edu	37	14	100182183	100182183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006668.1	+1	reviewed	p.R244W	0.677	50	0%	52	26.9%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_p450,superfamily_Cytochrome_P450
EVL	51466	genome.wustl.edu	37	14	100602267	100602267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016337.2	+1	validated	p.P309L	0.604	81	0%	105	43.8%	65	44.6%	benign(0.167)	deleterious(0.03)	neutral(0.380)	NULL
DEGS2	123099	genome.wustl.edu	37	14	100616017	100616017	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206918.2	-1	reviewed	p.R38Q	1.000	14	0%	28	46.4%	3	33.3%	benign(0.288)	deleterious(0)	deleterious(0.533)	HMMPfam_Lipid_DES
WDR25	79446	genome.wustl.edu	37	14	100934379	100934379	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024515.4	+1	validated	p.G282R	0.959	123	0%	115	37.4%	17	52.9%	possibly_damaging(0.676)	tolerated(0.62)	neutral(0.244)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
TECPR2	9895	genome.wustl.edu	37	14	102901460	102901460	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014844.3	+1	validated	p.T769M	0.815	29	0%	31	16.1%	2	0%	possibly_damaging(0.933)	deleterious(0.01)	deleterious(0.784)	NULL
TDRD9	122402	genome.wustl.edu	37	14	104471611	104471611	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153046.2	+1	validated	p.R528C	0.999	189	0%	220	34.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
SIVA1	10572	genome.wustl.edu	37	14	105223024	105223024	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006427.3	+1	reviewed	p.A133T	0.945	177	0%	216	38%	356	48.5%	probably_damaging(0.959)	tolerated(0.39)	neutral(0.419)	PatternScan_2FE2S_FER_1,HMMPfam_Siva
KIAA0284	283638	genome.wustl.edu	37	14	105349571	105349571	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001112726.1	+1	validated	p.A259	0.178	55	0%	62	35.5%	30	43.3%	-	-	-	NULL
NUDT14	256281	genome.wustl.edu	37	14	105639490	105639490	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177533.3	-1	validated	p.I179	0.996	66	0%	92	23.9%	137	51%	-	-	-	HMMPfam_NUDIX,superfamily_NUDIX_hydrolase
IGHV3-53	28420	genome.wustl.edu	37	14	107049088	107049088	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390627	-1	known	p.V11	0.000	566	0%	782	25.3%	37	0%	-	-	-	NULL
NIPA2	81614	genome.wustl.edu	37	15	23012434	23012434	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008860.2	-1	reviewed	p.I98T	1.000	173	0%	182	34.1%	48	54.1%	benign(0.366)	deleterious(0.01)	deleterious(0.522)	HMMPfam_DUF803,superfamily_Multidrug resistance efflux transporter EmrE
ATP10A	57194	genome.wustl.edu	37	15	25947103	25947103	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024490.3	-1	reviewed	p.D907G	1.000	225	0%	370	33.5%	2	0%	probably_damaging(0.994)	tolerated(0.07)	deleterious(0.771)	superfamily_SSF56784
HERC2	8924	genome.wustl.edu	37	15	28414696	28414696	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004667.4	-1	reviewed	p.D3388V	1.000	227	0%	270	28.5%	10	50%	benign(0.033)	deleterious(0.01)	neutral(0.407)	NULL
HERC2	8924	genome.wustl.edu	37	15	28437149	28437149	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004667.4	-1	reviewed	p.D2803	0.776	63	0%	109	39.4%	1	100%	-	-	-	superfamily_Galactose-binding domain-like
HERC2	8924	genome.wustl.edu	37	15	28508242	28508242	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004667.4	-1	reviewed	p.P648	0.989	510	0%	648	28.1%	2	50%	-	-	-	HMMPfam_RCC1,HMMSmart_SM00706,superfamily_RCC1/BLIP-II
MTMR10	54893	genome.wustl.edu	37	15	31267176	31267176	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017762.2	-1	validated	p.E97K	0.999	285	0%	234	38%	4	75%	probably_damaging(0.974)	tolerated(0.12)	deleterious(0.676)	superfamily_PH domain-like
TRPM1	4308	genome.wustl.edu	37	15	31352801	31352801	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002420.4	-1	reviewed	p.W381*	1.000	117	0%	129	33.3%	0	-	-	-	-	NULL
CHRM5	1133	genome.wustl.edu	37	15	34355478	34355478	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012125.3	+1	validated	p.F187S	1.000	203	0%	262	31.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
AQR	9716	genome.wustl.edu	37	15	35202473	35202473	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014691.2	-1	validated	p.R509Q	0.997	142	0%	159	37.7%	9	44.4%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
SPTBN5	51332	genome.wustl.edu	37	15	42162755	42162755	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016642.2	-1	validated	p.T1782	0.000	77	0%	79	39.2%	0	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
PLA2G4E	123745	genome.wustl.edu	37	15	42278134	42278134	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080490.1	-1	provisional	p.A673V	0.633	198	0%	316	36.1%	2	100%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like
GANC	2595	genome.wustl.edu	37	15	42603004	42603004	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198141.2	+1	reviewed	p.P339	0.998	301	0%	318	18.2%	2	50%	-	-	-	HMMPfam_Glyco_hydro_31
STARD9	57519	genome.wustl.edu	37	15	42976871	42976871	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001129482.3	+1	model	p.Y984C	0.053	147	0%	208	26.4%	0	-	benign(0.313)	-	-	NULL
UBR1	197131	genome.wustl.edu	37	15	43294867	43294867	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174916.2	-1	reviewed	p.R1182H	1.000	172	0%	188	31.9%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ZSCAN29	146050	genome.wustl.edu	37	15	43658311	43658311	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152455.3	-1	validated	p.G407C	1.000	84	0%	93	29%	3	0%	possibly_damaging(0.655)	deleterious(0.01)	deleterious(0.636)	NULL
TP53BP1	7158	genome.wustl.edu	37	15	43749045	43749045	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001141980.1	-1	validated	p.N587	0.992	343	0%	418	34%	7	57.1%	-	-	-	NULL
SPG11	80208	genome.wustl.edu	37	15	44921007	44921007	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025137.3	-1	reviewed	p.L643	1.000	587	0%	670	32.7%	9	33.3%	-	-	-	NULL
DUOX1	53905	genome.wustl.edu	37	15	45427399	45427399	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017434.3	+1	reviewed	p.D135	1.000	37	0%	46	28.3%	2	100%	-	-	-	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
DUOX1	53905	genome.wustl.edu	37	15	45444212	45444212	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017434.3	+1	reviewed	p.Y1052C	1.000	66	0%	63	31.7%	1	0%	possibly_damaging(0.92)	tolerated(0.11)	deleterious(0.643)	NULL
AP4E1	23431	genome.wustl.edu	37	15	51242331	51242331	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007347.3	+1	validated	p.F505L	0.045	393	0%	351	33%	2	50%	benign(0)	tolerated(0.64)	neutral(0.003)	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
DMXL2	23312	genome.wustl.edu	37	15	51772990	51772990	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015263.3	-1	validated	p.V2105I	0.330	210	0%	215	31.2%	2	0%	unknown(0)	tolerated(0.46)	-	superfamily_WD40 repeat-like
ONECUT1	3175	genome.wustl.edu	37	15	53049804	53049804	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004498.1	-1	provisional	p.S449N	1.000	330	0%	309	34.6%	0	-	benign(0)	tolerated(0.21)	neutral(0.044)	superfamily_Homeodomain-like
WDR72	256764	genome.wustl.edu	37	15	53997362	53997362	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182758.2	-1	validated	p.I391F	0.064	283	0.4%	244	27.9%	2	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00320
RFX7	64864	genome.wustl.edu	37	15	56385858	56385858	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022841.5	-1	validated	p.G1356	0.943	329	0%	279	31.9%	3	33.3%	-	-	-	NULL
RORA	6095	genome.wustl.edu	37	15	60803596	60803596	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_134260.2	-1	reviewed	p.A250T	0.996	248	0%	301	34.6%	0	-	benign(0)	tolerated(0.68)	neutral(0.002)	NULL
HERC1	8925	genome.wustl.edu	37	15	63964812	63964812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003922.3	-1	reviewed	p.T2643M	1.000	297	0%	346	29.2%	5	40%	possibly_damaging(0.855)	-	-	NULL
ZWILCH	55055	genome.wustl.edu	37	15	66801172	66801172	+	RNA	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_003105.1	+1	validated	NULL	0.317	320	0%	425	29.9%	0	-	-	-	-	-
ZWILCH	55055	genome.wustl.edu	37	15	66840999	66840999	+	RNA	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_003105.1	+1	validated	NULL	0.000	67	0%	72	27.8%	17	52.9%	-	-	-	-
LCTL	197021	genome.wustl.edu	37	15	66856305	66856305	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207338.2	-1	validated	p.V105A	0.942	209	0.5%	247	30.4%	0	-	benign(0.428)	tolerated(0.11)	neutral(0.411)	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat
CORO2B	10391	genome.wustl.edu	37	15	68937618	68937618	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000261861	+1	known	p.F45L	1.000	70	0%	104	38.5%	0	-	benign(0.416)	tolerated(0.06)	neutral(0.457)	superfamily_WD40 repeat-like,HMMPfam_DUF1899
MYO9A	4649	genome.wustl.edu	37	15	72170529	72170529	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006901.2	-1	validated	p.L1928P	0.997	157	0%	129	33.3%	3	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
PARP6	56965	genome.wustl.edu	37	15	72559138	72559138	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020214.2	-1	provisional	p.D10G	1.000	393	0%	426	23.5%	20	60%	possibly_damaging(0.909)	deleterious(0.01)	deleterious(0.768)	NULL
CELF6	60677	genome.wustl.edu	37	15	72581221	72581221	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052840.4	-1	reviewed	p.H361Y	1.000	23	0%	28	32.1%	0	-	possibly_damaging(0.767)	tolerated(0.06)	deleterious(0.607)	superfamily_RNA-binding domain RBD
NEO1	4756	genome.wustl.edu	37	15	73562475	73562475	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002499.3	+1	validated	p.T873	0.007	185	0.5%	144	32.6%	21	57.1%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
HCN4	10021	genome.wustl.edu	37	15	73615569	73615569	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005477.2	-1	reviewed	p.P955	0.000	13	0%	16	37.5%	0	-	-	-	-	NULL
LMAN1L	79748	genome.wustl.edu	37	15	75113443	75113443	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021819.2	+1	validated	p.T312M	0.001	68	0%	85	27.1%	0	-	probably_damaging(0.987)	deleterious(0.02)	deleterious(0.820)	NULL
LMAN1L	79748	genome.wustl.edu	37	15	75115980	75115980	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021819.2	+1	validated	p.D427G	0.576	69	0%	131	21.4%	0	-	benign(0.05)	tolerated(0.25)	neutral(0.040)	NULL
ULK3	25989	genome.wustl.edu	37	15	75133825	75133825	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099436.1	-1	validated	p.E130	0.988	287	0%	382	29.3%	34	61.7%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
COMMD4	54939	genome.wustl.edu	37	15	75631381	75631381	+	Silent	SNP	G	G	A	rs139615169	by1000genomes	TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017828.3	+1	validated	p.A79	0.833	96	0%	112	36.6%	145	35.8%	-	-	-	HMMPfam_HCaRG
SIN3A	25942	genome.wustl.edu	37	15	75682066	75682066	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145357.1	-1	reviewed	p.L983P	1.000	290	0%	340	33.5%	50	62%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SIN3A	25942	genome.wustl.edu	37	15	75694266	75694266	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145357.1	-1	reviewed	p.R485C	1.000	235	0%	256	30.9%	9	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PAH,superfamily_PAH
ADAMTSL3	57188	genome.wustl.edu	37	15	84553880	84553880	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207517.2	+1	validated	p.V330M	0.973	314	0%	415	33.7%	0	-	benign(0.005)	tolerated(0.08)	neutral(0.300)	NULL
ALPK3	57538	genome.wustl.edu	37	15	85384034	85384034	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020778.4	+1	validated	p.C710	0.000	79	0%	90	32.2%	3	66.6%	-	-	-	NULL
AKAP13	11214	genome.wustl.edu	37	15	86286988	86286988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006738.4	+1	reviewed	p.G2779E	0.914	70	0%	79	35.4%	27	40.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
C15orf42	90381	genome.wustl.edu	37	15	90138672	90138672	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152259.3	+1	validated	p.R577H	1.000	256	0%	340	29.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIF7	374654	genome.wustl.edu	37	15	90191962	90191962	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198525.2	-1	validated	p.I323F	1.000	25	0%	75	42.7%	0	-	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
IQGAP1	8826	genome.wustl.edu	37	15	91009572	91009572	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003870.3	+1	reviewed	p.R647C	1.000	214	0%	336	30.7%	33	39.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ADAMTS17	170691	genome.wustl.edu	37	15	100801717	100801717	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139057.2	-1	reviewed	p.P333Q	0.015	155	0%	176	28.4%	2	50%	benign(0.001)	deleterious(0.04)	neutral(0.349)	"superfamily_Metalloproteases (""zincins"") catalytic domain"
ADAMTS17	170691	genome.wustl.edu	37	15	100801760	100801760	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139057.2	-1	reviewed	p.R319*	0.034	166	0.6%	172	29.1%	1	0%	-	-	-	"superfamily_Metalloproteases (""zincins"") catalytic domain"
PCSK6	5046	genome.wustl.edu	37	15	101872180	101872180	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000331826	-1	known	p.T638S	0.813	128	0%	178	29.8%	2	100%	benign(0.002)	tolerated(1)	-	NULL
SOLH	6650	genome.wustl.edu	37	16	603375	603375	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005632.2	+1	reviewed	p.N1040	0.977	41	0%	45	33.3%	108	56.4%	-	-	-	NULL
RHOT2	89941	genome.wustl.edu	37	16	720752	720752	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138769.1	+1	provisional	p.D206	0.950	52	0%	55	25.5%	39	43.5%	-	-	-	superfamily_EF-hand
WDR24	84219	genome.wustl.edu	37	16	737174	737174	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032259.2	-1	provisional	p.T301M	0.993	51	0%	68	33.8%	6	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like
RPUSD1	113000	genome.wustl.edu	37	16	837452	837452	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_058192.2	-1	validated	p.T70A	1.000	35	0%	28	17.9%	43	37.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PseudoU_synth_2,superfamily_PsdUridine_synth_cat_dom
BAIAP3	8938	genome.wustl.edu	37	16	1394285	1394285	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000440627	+1	known	p.G164R	0.039	130	0%	165	40.6%	10	50%	unknown(0)	tolerated(0.71)	-	NULL
CLCN7	1186	genome.wustl.edu	37	16	1507326	1507326	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001287.4	-1	reviewed	p.I251L	1.000	129	0%	154	31.8%	54	50%	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	HMMPfam_Voltage_CLC,superfamily_Cl-channel_core
TSC2	7249	genome.wustl.edu	37	16	2133796	2133796	+	Silent	SNP	G	G	A	rs137854255		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000548.3	+1	reviewed	p.R1328	0.097	72	0%	100	31%	38	57.8%	-	-	-	NULL
PKD1	5310	genome.wustl.edu	37	16	2154628	2154628	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009944.2	-1	reviewed	p.L2678F	0.997	20	0%	42	14.3%	9	22.2%	benign(0.08)	tolerated(0.29)	neutral(0.035)	HMMPfam_REJ
CEMP1	752014	genome.wustl.edu	37	16	2580562	2580562	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001048212.2	-1	validated	p.S171R	0.000	224	0%	258	27.1%	11	54.5%	unknown(0)	-	-	NULL
KCTD5	54442	genome.wustl.edu	37	16	2752376	2752376	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018992.3	+1	validated	p.Y191C	1.000	102	0%	131	37.4%	46	45.6%	possibly_damaging(0.721)	deleterious(0)	deleterious(0.706)	NULL
PRSS22	64063	genome.wustl.edu	37	16	2905693	2905693	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022119.3	-1	reviewed	p.L147	0.000	85	0%	174	37.9%	138	52.8%	-	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
ZNF205	7755	genome.wustl.edu	37	16	3169603	3169603	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042428.1	+1	validated	p.G314	0.792	36	0%	30	43.3%	41	48.7%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF213	7760	genome.wustl.edu	37	16	3187441	3187441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134655.1	+1	validated	p.G54R	0.000	35	0%	34	14.7%	5	20%	benign(0)	tolerated(0.31)	neutral(0.027)	HMMPfam_SCAN,HMMSmart_SM00431
ZNF213	7760	genome.wustl.edu	37	16	3190866	3190866	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134655.1	+1	validated	p.R300W	0.966	12	0%	10	50%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
OR1F1	4992	genome.wustl.edu	37	16	3255121	3255121	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012360.1	+1	provisional	p.L292P	1.000	95	0%	83	27.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SSF81321
SLX4	84464	genome.wustl.edu	37	16	3639605	3639605	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032444.2	-1	provisional	p.R1345H	0.000	225	0%	333	31.8%	5	40%	possibly_damaging(0.865)	tolerated(0.5)	neutral(0.345)	NULL
CREBBP	1387	genome.wustl.edu	37	16	3779350	3779350	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004380.2	-1	reviewed	p.P1900A	1.000	81	0%	192	36.5%	16	43.7%	probably_damaging(0.981)	tolerated(0.19)	deleterious(0.475)	NULL
CREBBP	1387	genome.wustl.edu	37	16	3817857	3817857	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004380.2	-1	reviewed	p.I1038M	0.000	794	0%	1142	32.3%	8	62.5%	unknown(0)	tolerated(0.14)	-	NULL
ADCY9	115	genome.wustl.edu	37	16	4164453	4164453	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001116.2	-1	reviewed	p.E331*	1.000	332	0%	419	28.2%	4	50%	-	-	-	HMMSmart_SM00044
UBN1	29855	genome.wustl.edu	37	16	4902950	4902950	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079514.1	+1	validated	p.S11Y	1.000	180	0%	192	33.3%	7	42.8%	possibly_damaging(0.848)	deleterious(0)	deleterious(0.770)	NULL
PPL	5493	genome.wustl.edu	37	16	4933910	4933910	+	Silent	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002705.4	-1	reviewed	p.L1582	0.934	256	0%	325	36%	118	55%	-	-	-	NULL
PPL	5493	genome.wustl.edu	37	16	4934127	4934127	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002705.4	-1	reviewed	p.G1510D	0.966	78	0%	68	22.1%	93	36.5%	probably_damaging(0.97)	tolerated(1)	neutral(0.412)	NULL
C16orf89	146556	genome.wustl.edu	37	16	5094354	5094354	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098514.1	-1	validated	p.R399C	0.000	265	0%	423	26.2%	0	-	unknown(0)	-	-	NULL
PDXDC1	23042	genome.wustl.edu	37	16	15130022	15130022	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015027.2	+1	validated	p.P753S	0.006	179	0%	173	35.3%	100	44%	benign(0.277)	tolerated(0.3)	neutral(0.058)	NULL
LOC100288226	100288226	genome.wustl.edu	37	16	15221643	15221643	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343422.1	+1	model	p.K95E	1.000	56	0%	52	19.2%	24	20.8%	unknown(0)	-	-	NULL
NDE1	54820	genome.wustl.edu	37	16	15788055	15788055	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143979.1	+1	reviewed	p.T246I	1.000	109	0%	101	35.6%	13	76.9%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_NUDE_C
MYH11	4629	genome.wustl.edu	37	16	15812255	15812255	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040114.1	-1	reviewed	p.I1745F	0.998	97	0%	79	26.6%	1	0%	benign(0.057)	deleterious(0)	neutral(0.448)	HMMPfam_Myosin_tail_1
MYH11	4629	genome.wustl.edu	37	16	15814784	15814784	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040114.1	-1	reviewed	p.N1575S	1.000	211	0%	228	33.3%	3	0%	benign(0.256)	deleterious(0.04)	neutral(0.376)	HMMPfam_Myosin_tail_1
NOMO3	408050	genome.wustl.edu	37	16	16337029	16337029	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004067.2	+1	reviewed	p.V105M	1.000	905	0%	1055	10.1%	17	23.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
VWA3A	146177	genome.wustl.edu	37	16	22134971	22134971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173615.3	+1	validated	p.R492Q	0.987	164	0%	183	31.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
EEF2K	29904	genome.wustl.edu	37	16	22276176	22276176	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013302.3	+1	reviewed	p.E472G	0.998	161	0%	231	37.2%	5	20%	possibly_damaging(0.861)	tolerated(0.11)	deleterious(0.605)	NULL
PALB2	79728	genome.wustl.edu	37	16	23646870	23646870	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024675.3	-1	reviewed	p.T333A	0.000	357	0%	328	25.6%	4	75%	benign(0.243)	deleterious(0)	deleterious(0.469)	NULL
ARHGAP17	55114	genome.wustl.edu	37	16	24981853	24981853	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001006634.1	-1	validated	p.T83S	0.008	446	0%	480	27.9%	13	30.7%	benign(0)	tolerated(0.25)	neutral(0.037)	HMMPfam_BAR,HMMSmart_SM00721
IL4R	3566	genome.wustl.edu	37	16	27356224	27356224	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000418.2	+1	reviewed	p.A82T	0.000	89	0%	101	40.6%	35	57.1%	benign(0.002)	tolerated(1)	-	superfamily_Fibronectin type III,HMMPfam_IL4Ra_N
KIAA0556	23247	genome.wustl.edu	37	16	27777769	27777769	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015202.2	+1	validated	p.K1317E	1.000	67	0%	71	28.2%	4	75%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	superfamily_Galactose-binding domain-like
APOBR	55911	genome.wustl.edu	37	16	28508302	28508302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018690.2	+1	reviewed	p.R638Q	0.000	69	0%	68	25%	6	0%	benign(0.366)	tolerated(0.57)	neutral(0.123)	NULL
RABEP2	79874	genome.wustl.edu	37	16	28920012	28920012	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024816.2	-1	validated	p.R388Q	0.999	195	0%	236	25.4%	25	64%	probably_damaging(0.994)	tolerated(0.74)	neutral(0.454)	HMMPfam_Rab5-bind
DOC2A	8448	genome.wustl.edu	37	16	30018406	30018406	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003586.2	-1	reviewed	p.A220	0.819	45	0%	58	27.6%	0	-	-	-	-	superfamily_C2_CaLB
MAPK3	5595	genome.wustl.edu	37	16	30128010	30128010	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002746.2	-1	reviewed	p.P373	0.988	34	0%	31	29%	123	50.4%	-	-	-	superfamily_Protein kinase-like (PK-like)
ITGAL	3683	genome.wustl.edu	37	16	30506048	30506048	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002209.2	+1	reviewed	p.F460	0.996	246	0%	317	32.5%	2	0%	-	-	-	HMMPfam_FG-GAP,HMMSmart_SM00191,superfamily_Integrin alpha N-terminal domain
SRCAP	10847	genome.wustl.edu	37	16	30718620	30718620	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006662.2	+1	validated	p.C141	1.000	141	0%	186	33.9%	7	42.8%	-	-	-	HMMPfam_HSA,HMMSmart_SM00573
SRCAP	10847	genome.wustl.edu	37	16	30721282	30721282	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006662.2	+1	validated	p.L323	1.000	152	0%	242	31.4%	10	30%	-	-	-	NULL
SRCAP	10847	genome.wustl.edu	37	16	30747906	30747906	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006662.2	+1	validated	p.S2323	0.197	101	0%	105	31.4%	12	91.6%	-	-	-	NULL
SRCAP	10847	genome.wustl.edu	37	16	30749579	30749579	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006662.2	+1	validated	p.Q2740*	1.000	67	0%	77	28.6%	36	44.4%	-	-	-	NULL
RNF40	9810	genome.wustl.edu	37	16	30783428	30783428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014771.2	+1	reviewed	p.R916W	0.998	97	0%	131	30.5%	67	47.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF646	9726	genome.wustl.edu	37	16	31088375	31088375	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014699.3	+1	validated	p.C244R	0.997	99	0%	97	39.2%	4	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ITGAX	3687	genome.wustl.edu	37	16	31367985	31367985	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000887.3	+1	reviewed	p.N61	0.194	105	0%	94	14.9%	0	-	-	-	-	HMMSmart_Int_alpha,superfamily_SSF69318
RPGRIP1L	23322	genome.wustl.edu	37	16	53635992	53635992	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015272.2	-1	reviewed	p.A1315V	0.913	289	0%	312	24.7%	6	16.6%	benign(0.041)	deleterious(0)	neutral(0.447)	NULL
MMP2	4313	genome.wustl.edu	37	16	55532271	55532271	+	Silent	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004530.4	+1	reviewed	p.G560	0.640	175	0%	210	33.3%	17	0%	-	-	-	superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX
NLRC5	84166	genome.wustl.edu	37	16	57093404	57093404	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032206.3	+1	validated	p.I1316F	0.202	128	0%	165	27.9%	42	45.2%	benign(0.275)	deleterious(0.02)	neutral(0.412)	superfamily_RNI-like
FAM192A	80011	genome.wustl.edu	37	16	57207697	57207697	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024946.2	-1	validated	p.R24W	1.000	554	0.2%	615	32.5%	47	51%	benign(0.003)	deleterious(0.04)	neutral(0.349)	HMMPfam_Nefa_Nip30_N
RSPRY1	89970	genome.wustl.edu	37	16	57238576	57238576	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133368.1	+1	provisional	p.I2	1.000	238	0%	226	32.7%	13	46.1%	-	-	-	NULL
CNGB1	1258	genome.wustl.edu	37	16	57937840	57937840	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001297.4	-1	reviewed	p.R894C	1.000	228	0%	226	31.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_cAMP-binding domain-like
TEPP	374739	genome.wustl.edu	37	16	58018221	58018221	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199046.2	+1	validated	p.A135S	0.416	220	0%	230	24.3%	0	-	possibly_damaging(0.664)	tolerated(0.07)	deleterious(0.554)	NULL
CNOT1	23019	genome.wustl.edu	37	16	58559235	58559235	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016284.3	-1	validated	p.N2211S	1.000	351	0%	461	34.7%	111	41.4%	probably_damaging(0.984)	tolerated(0.06)	deleterious(0.753)	HMMPfam_Not1
CDH11	1009	genome.wustl.edu	37	16	65032487	65032487	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001797.2	-1	reviewed	p.N167	0.911	171	0%	196	33.2%	0	-	possibly_damaging(0.735)	deleterious(0.02)	deleterious(0.651)	HMMPfam_Cadherin,superfamily_Cadherin-like
DYNC1LI2	1783	genome.wustl.edu	37	16	66783105	66783105	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006141.2	-1	validated	p.R98Q	1.000	503	0%	700	32.6%	17	29.4%	benign(0.006)	tolerated(0.39)	neutral(0.016)	HMMPfam_DLIC,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIAA0895L	653319	genome.wustl.edu	37	16	67210741	67210741	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040715.1	-1	validated	p.A463	0.669	74	0%	86	27.9%	14	57.1%	-	-	-	NULL
FHOD1	29109	genome.wustl.edu	37	16	67263705	67263705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013241.2	-1	reviewed	p.R1135C	1.000	133	0%	145	32.4%	58	37.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FHOD1	29109	genome.wustl.edu	37	16	67270542	67270542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013241.2	-1	reviewed	p.G413S	0.000	75	0%	105	31.4%	8	75%	probably_damaging(0.971)	deleterious(0.03)	deleterious(0.777)	NULL
CHTF8	54921	genome.wustl.edu	37	16	69154264	69154264	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000306585	-1	known	p.R23Q	1.000	234	0%	271	36.2%	39	41%	unknown(0)	deleterious(0)	-	NULL
CIRH1A	84916	genome.wustl.edu	37	16	69184590	69184590	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032830.2	+1	reviewed	p.P297T	0.969	182	0%	200	29%	61	47.5%	benign(0.005)	tolerated(0.83)	neutral(0.001)	HMMSmart_SM00320,superfamily_WD40 repeat-like
VPS4A	27183	genome.wustl.edu	37	16	69349965	69349965	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013245.2	+1	reviewed	p.E26K	1.000	84	0%	103	32%	43	46.5%	benign(0.008)	tolerated(0.31)	neutral(0.027)	HMMPfam_MIT,HMMSmart_SM00745
PDPR	55066	genome.wustl.edu	37	16	70190439	70190439	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017990.3	+1	validated	p.R766H	1.000	313	0%	372	18.5%	3	66.6%	probably_damaging(0.965)	deleterious(0.02)	deleterious(0.790)	HMMPfam_GCV_T_C,superfamily_SSF101790
HYDIN	54768	genome.wustl.edu	37	16	71096197	71096197	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032821.2	-1	validated	p.T751A	0.000	185	0%	180	27.8%	0	-	benign(0)	tolerated(0.78)	neutral(0.001)	NULL
HYDIN	54768	genome.wustl.edu	37	16	71101160	71101160	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000288168	-1	known	p.S703L	0.000	52	0%	40	27.5%	0	-	benign(0.424)	-	-	NULL
LOC401859	401859	genome.wustl.edu	37	16	74255307	74255307	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344115.1	+1	model	p.G158E	1.000	26	0%	32	40.6%	0	-	-	-	-	HMMPfam_Pro_isomerase,superfamily_Cyclophilin-like
CHST6	4166	genome.wustl.edu	37	16	75513508	75513508	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021615.4	-1	reviewed	p.A73	0.163	12	0%	21	61.9%	2	50%	-	-	-	HMMPfam_Sulfotransfer_1,superfamily_SSF52540
CNTNAP4	85445	genome.wustl.edu	37	16	76532533	76532533	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033401.3	+1	reviewed	p.Q769R	0.995	247	0%	248	27.8%	0	-	-	-	-	NULL
MBTPS1	8720	genome.wustl.edu	37	16	84129262	84129262	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003791.2	-1	reviewed	p.P190	0.023	108	0%	143	33.6%	22	54.5%	-	-	-	superfamily_Pept_S8_S53
TAF1C	9013	genome.wustl.edu	37	16	84213294	84213294	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005679.2	-1	reviewed	p.C621	0.000	15	0%	32	34.4%	21	66.6%	-	-	-	NULL
ZCCHC14	23174	genome.wustl.edu	37	16	87446744	87446744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015144.2	-1	validated	p.S417L	0.996	77	0%	86	32.6%	6	50%	unknown(0)	deleterious(0)	-	NULL
SLC7A5	8140	genome.wustl.edu	37	16	87902661	87902661	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003486.5	-1	validated	p.V123A	1.000	43	0%	52	30.8%	40	55%	benign(0.09)	tolerated(1)	neutral(0.006)	HMMPfam_AA_permease
ZC3H18	124245	genome.wustl.edu	37	16	88697657	88697657	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144604.3	+1	validated	p.V938M	1.000	47	0%	51	25.5%	46	43.4%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
CBFA2T3	863	genome.wustl.edu	37	16	88951587	88951587	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005187.4	-1	reviewed	p.S328R	1.000	135	0%	152	28.9%	1	0%	benign(0.024)	deleterious(0.05)	neutral(0.346)	NULL
LOC100289515	100289515	genome.wustl.edu	37	16	89167455	89167455	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344124.1	-1	model	p.C129R	0.006	59	0%	77	24.7%	1	0%	-	-	-	NULL
ZNF778	197320	genome.wustl.edu	37	16	89289569	89289569	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182531.2	+1	validated	p.A41V	0.004	300	0.7%	460	28.7%	1	100%	benign(0)	tolerated(0.13)	neutral(0.253)	superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ANKRD11	29123	genome.wustl.edu	37	16	89334972	89334972	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013275.4	-1	validated	p.H2636Y	1.000	61	0%	95	25.3%	22	45.4%	benign(0.044)	tolerated(0.7)	neutral(0.005)	NULL
ANKRD11	29123	genome.wustl.edu	37	16	89345738	89345738	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013275.4	-1	validated	p.T2404	0.659	62	0%	68	36.8%	17	52.9%	-	-	-	NULL
FANCA	2175	genome.wustl.edu	37	16	89831414	89831414	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000135.2	-1	reviewed	p.V888I	0.000	101	0%	161	29.2%	12	41.6%	benign(0.026)	tolerated(0.44)	neutral(0.014)	NULL
TUBB3	10381	genome.wustl.edu	37	16	90001646	90001646	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006086.2	+1	validated	p.L263M	1.000	64	0%	101	23.8%	176	38.6%	probably_damaging(0.962)	deleterious(0)	deleterious(0.850)	superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C
C17orf97	400566	genome.wustl.edu	37	17	263084	263084	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013672.4	+1	validated	p.T150	0.000	225	0%	337	31.5%	12	41.6%	-	-	-	NULL
GLOD4	51031	genome.wustl.edu	37	17	679144	679144	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016080.3	-1	validated	p.S93P	1.000	147	0%	139	38.1%	65	50.7%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Glyoxalase
SMYD4	114826	genome.wustl.edu	37	17	1686672	1686672	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052928.2	-1	validated	p.R707W	1.000	27	0%	39	33.3%	4	50%	probably_damaging(0.953)	deleterious(0.01)	deleterious(0.802)	superfamily_TPR-like
RPA1	6117	genome.wustl.edu	37	17	1782886	1782886	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002945.3	+1	validated	p.A329T	0.999	150	0%	225	10.2%	55	7.2%	benign(0.031)	deleterious(0.03)	neutral(0.366)	superfamily_Nucleic acid-binding proteins
RPA1	6117	genome.wustl.edu	37	17	1791997	1791997	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002945.3	+1	validated	p.V468A	0.998	137	0%	160	29.4%	53	52.8%	possibly_damaging(0.558)	deleterious(0.01)	deleterious(0.596)	HMMPfam_Rep_fac-A_C,superfamily_Nucleic acid-binding proteins
RAP1GAP2	23108	genome.wustl.edu	37	17	2929681	2929681	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015085.4	+1	reviewed	p.S635A	1.000	25	0%	32	25%	9	66.6%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
ITGAE	3682	genome.wustl.edu	37	17	3657109	3657109	+	Missense_Mutation	SNP	C	C	T	rs2272605	byCluster;byFrequency	TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002208.4	-1	reviewed	p.A499T	0.001	64	0%	59	30.5%	5	0%	benign(0)	tolerated(0.27)	neutral(0.034)	HMMSmart_Int_alpha,superfamily_SSF69318
CAMKK1	84254	genome.wustl.edu	37	17	3769245	3769245	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172207.2	-1	reviewed	p.R506W	0.990	148	0%	147	38.8%	4	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CAMKK1	84254	genome.wustl.edu	37	17	3788965	3788965	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172207.2	-1	reviewed	p.A6V	0.514	74	0%	77	28.6%	1	100%	benign(0.209)	deleterious(0.01)	neutral(0.426)	NULL
P2RX1	5023	genome.wustl.edu	37	17	3802294	3802294	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002558.2	-1	reviewed	p.N300	0.304	179	0.6%	256	24.6%	1	0%	-	-	-	HMMPfam_P2X_receptor
PELP1	27043	genome.wustl.edu	37	17	4576669	4576669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014389.2	-1	validated	p.R574H	0.157	52	0%	71	32.4%	40	45%	unknown(0)	tolerated(0.59)	-	HMMPfam_NUC202
VMO1	284013	genome.wustl.edu	37	17	4688848	4688848	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182566.2	-1	validated	p.N140D	0.994	77	0%	116	35.3%	6	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_VOMI,superfamily_VOMI
GP1BA	2811	genome.wustl.edu	37	17	4835905	4835905	+	Silent	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000173.5	+1	reviewed	p.P2	0.950	126	0%	181	29.8%	0	-	-	-	-	NULL
GP1BA	2811	genome.wustl.edu	37	17	4836225	4836225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000173.5	+1	reviewed	p.P109L	0.984	50	0%	48	27.1%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_SSF52058
SLC52A1	55065	genome.wustl.edu	37	17	4937156	4937156	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001104577.1	-1	validated	p.A210T	0.643	67	0%	103	24.3%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
FAM64A	54478	genome.wustl.edu	37	17	6348629	6348629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019013.1	+1	provisional	p.P67S	0.959	89	0%	81	34.6%	9	55.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DUF1466
DLG4	1742	genome.wustl.edu	37	17	7096996	7096996	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001365.3	-1	reviewed	p.T570	0.007	220	0.5%	270	30.7%	4	25%	-	-	-	superfamily_SH3,superfamily_SSF52540
DLG4	1742	genome.wustl.edu	37	17	7100284	7100284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001365.3	-1	reviewed	p.R335Q	1.000	83	0%	107	34.6%	9	22.2%	benign(0.159)	tolerated(0.37)	neutral(0.033)	HMMPfam_PDZ_assoc
POLR2A	5430	genome.wustl.edu	37	17	7400677	7400677	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000937.3	+1	validated	p.D274	1.000	38	0%	33	45.5%	26	34.6%	-	-	-	HMMPfam_RNA_pol_Rpb1_1,superfamily_SSF64484
POLR2A	5430	genome.wustl.edu	37	17	7403995	7403995	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000937.3	+1	validated	p.W570L	1.000	239	0%	326	32.2%	25	36%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RNA_pol_Rpb1_3,superfamily_SSF64484
EIF4A1	1973	genome.wustl.edu	37	17	7481145	7481145	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001416.2	+1	validated	p.H303Y	1.000	236	0%	329	31.6%	1798	45.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH2	146754	genome.wustl.edu	37	17	7689629	7689629	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020877.2	+1	validated	p.R2106H	0.047	78	0%	117	35%	0	-	benign(0.002)	tolerated(0.05)	neutral(0.345)	HMMPfam_AAA_5
CHD3	1107	genome.wustl.edu	37	17	7804274	7804274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005271.2	+1	reviewed	p.C1087Y	1.000	228	0%	290	29.3%	19	47.3%	probably_damaging(0.994)	-	-	HMMPfam_SNF2_N
CHD3	1107	genome.wustl.edu	37	17	7813890	7813890	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005271.2	+1	reviewed	p.T1971M	0.999	77	0%	70	42.9%	113	40.7%	benign(0.073)	-	-	NULL
ALOX12B	242	genome.wustl.edu	37	17	7979992	7979992	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001139.2	-1	reviewed	p.G449R	0.134	132	0%	194	37.1%	0	-	possibly_damaging(0.952)	tolerated(0.39)	neutral(0.412)	HMMPfam_Lipoxygenase,superfamily_Lipoxygenase
PER1	5187	genome.wustl.edu	37	17	8045140	8045140	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002616.2	-1	reviewed	p.R1195W	1.000	153	0%	136	33.1%	21	42.8%	possibly_damaging(0.952)	deleterious(0.01)	deleterious(0.801)	NULL
PFAS	5198	genome.wustl.edu	37	17	8171914	8171914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012393.2	+1	reviewed	p.R1149Q	1.000	49	0%	61	36.1%	22	40.9%	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	superfamily_Class I glutamine amidotransferase-like
DNAH9	1770	genome.wustl.edu	37	17	11806206	11806206	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001372.3	+1	reviewed	p.P3859	0.797	92	0%	93	31.2%	0	-	-	-	-	HMMPfam_Dynein_heavy
ARHGAP44	9912	genome.wustl.edu	37	17	12862044	12862044	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014859.4	+1	validated	p.F451	1.000	242	0%	358	28.5%	5	20%	-	-	-	NULL
HS3ST3B1	9953	genome.wustl.edu	37	17	14248392	14248392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006041.1	+1	reviewed	p.T201M	1.000	125	0%	155	19.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
RAI1	10743	genome.wustl.edu	37	17	17699242	17699242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030665.3	+1	reviewed	p.R994W	0.256	31	0%	20	50%	9	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MYO15A	51168	genome.wustl.edu	37	17	18023309	18023309	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016239.3	+1	reviewed	p.Y399H	0.886	54	0%	88	34.1%	0	-	probably_damaging(0.976)	-	-	NULL
MAPK7	5598	genome.wustl.edu	37	17	19284087	19284087	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002749.3	+1	reviewed	p.L189	0.800	144	0%	233	24.5%	12	25%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_MAPK,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ENSG00000167524	0	genome.wustl.edu	37	17	26940119	26940119	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000301037	-1	known	p.C152R	1.000	338	0%	379	27.4%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SSH2	85464	genome.wustl.edu	37	17	27959445	27959445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033389.2	-1	reviewed	p.R896C	0.992	296	0.3%	237	34.2%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PSMD11	5717	genome.wustl.edu	37	17	30781618	30781618	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002815.2	+1	reviewed	p.E100V	1.000	256	0%	281	34.9%	73	41%	benign(0.327)	deleterious(0.01)	deleterious(0.508)	NULL
TMEM98	26022	genome.wustl.edu	37	17	31260263	31260263	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033504.1	+1	validated	p.V68A	1.000	289	0%	396	30.6%	2	0%	benign(0.005)	tolerated(0.29)	neutral(0.029)	NULL
RFFL	117584	genome.wustl.edu	37	17	33353415	33353415	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017368.1	-1	validated	p.H53R	0.996	98	0%	97	29.9%	4	50%	benign(0.003)	tolerated(0.54)	neutral(0.007)	superfamily_FYVE/PHD zinc finger
SLFN13	146857	genome.wustl.edu	37	17	33767766	33767766	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144682.5	-1	validated	p.H848Y	0.000	461	0%	559	34%	4	50%	benign(0)	tolerated(0.14)	neutral(0.249)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ACACA	31	genome.wustl.edu	37	17	35641817	35641817	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198834.1	-1	reviewed	p.I131M	1.000	278	0%	271	35.1%	1	0%	benign(0)	tolerated(0.42)	neutral(0.014)	NULL
MLLT6	4302	genome.wustl.edu	37	17	36868110	36868110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005937.3	+1	validated	p.R188Q	0.936	226	0%	287	23%	12	16.6%	possibly_damaging(0.6)	deleterious(0.05)	deleterious(0.553)	NULL
FBXO47	494188	genome.wustl.edu	37	17	37111107	37111107	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008777.2	-1	validated	e4+2	1.000	161	0%	216	31.5%	0	-	-	-	-	-
CACNB1	782	genome.wustl.edu	37	17	37343135	37343135	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000723.3	-1	reviewed	p.C154	0.990	61	0%	66	25.8%	0	-	-	-	-	HMMPfam_SH3_1,superfamily_SH3-domain
PSMD3	5709	genome.wustl.edu	37	17	38140708	38140708	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002809.2	+1	reviewed	p.R128*	1.000	152	0%	225	31.6%	63	1.5%	-	-	-	superfamily_TPR-like
NR1D1	9572	genome.wustl.edu	37	17	38252061	38252061	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021724.2	-1	provisional	p.A295V	1.000	162	0%	183	29%	31	45.1%	possibly_damaging(0.476)	tolerated(0.06)	deleterious(0.480)	NULL
KRT25	147183	genome.wustl.edu	37	17	38910199	38910199	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181534.3	-1	reviewed	p.D194	1.000	254	0%	257	27.6%	0	-	-	-	-	HMMPfam_Filament
KRT12	3859	genome.wustl.edu	37	17	39022440	39022440	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000223.3	-1	reviewed	p.N206S	1.000	173	0%	205	27.3%	1	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Filament
KRT12	3859	genome.wustl.edu	37	17	39023176	39023176	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000223.3	-1	reviewed	p.A88V	0.033	82	0%	92	37%	1	0%	unknown(0)	tolerated(0.18)	-	NULL
KRT20	54474	genome.wustl.edu	37	17	39041140	39041140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019010.1	-1	reviewed	p.V100M	0.000	252	0%	273	22.7%	0	-	benign(0.263)	tolerated(0.11)	neutral(0.299)	HMMPfam_Filament
KRT13	3860	genome.wustl.edu	37	17	39658841	39658841	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153490.2	-1	reviewed	p.A343	0.014	75	0%	101	36.6%	41	85.3%	-	-	-	HMMPfam_Filament
STAT3	6774	genome.wustl.edu	37	17	40498610	40498610	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139276.2	-1	reviewed	p.R84*	1.000	281	0%	245	29.4%	32	3.1%	-	-	-	HMMPfam_STAT_int,superfamily_Transcription factor STAT-4 N-domain
COASY	80347	genome.wustl.edu	37	17	40717048	40717048	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042532.2	+1	validated	p.R458W	1.000	231	0%	288	34%	126	41.2%	possibly_damaging(0.836)	deleterious(0.03)	deleterious(0.684)	HMMPfam_CoaE,superfamily_SSF52540
TUBG1	7283	genome.wustl.edu	37	17	40766321	40766321	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001070.4	+1	reviewed	p.R296Q	1.000	134	0%	167	29.3%	90	38.8%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C
TUBG2	27175	genome.wustl.edu	37	17	40817816	40817816	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016437.2	+1	validated	p.G272S	0.999	320	0%	425	38.1%	21	4.7%	probably_damaging(1)	tolerated(1)	deleterious(0.500)	superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C
CNTNAP1	8506	genome.wustl.edu	37	17	40837389	40837389	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003632.2	+1	reviewed	p.Y222	0.883	42	0%	66	34.8%	0	-	-	-	-	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
VAT1	10493	genome.wustl.edu	37	17	41170144	41170144	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000315674	-1	known	p.A225T	1.000	193	0%	219	41.6%	89	47.1%	benign(0.004)	tolerated(0.14)	neutral(0.249)	NULL
C17orf53	78995	genome.wustl.edu	37	17	42226248	42226248	+	Silent	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024032.3	+1	validated	p.P359	0.805	213	0%	319	14.1%	2	50%	-	-	-	NULL
TMUB2	79089	genome.wustl.edu	37	17	42267919	42267919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001076674.1	+1	validated	p.R218H	1.000	136	0%	131	34.4%	59	47.4%	benign(0.316)	deleterious(0.01)	deleterious(0.505)	HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like
ITGA2B	3674	genome.wustl.edu	37	17	42457993	42457993	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000419.3	-1	reviewed	p.G472R	0.996	265	0%	398	32.2%	0	-	possibly_damaging(0.825)	deleterious(0.01)	deleterious(0.718)	HMMPfam_FG-GAP,HMMSmart_SM00191,superfamily_Integrin alpha N-terminal domain
GJC1	10052	genome.wustl.edu	37	17	42882784	42882784	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080383.1	-1	reviewed	p.N134	0.629	465	0.2%	495	28.5%	1	100%	-	-	-	NULL
KIF18B	146909	genome.wustl.edu	37	17	43012694	43012694	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080443.1	-1	provisional	p.E135V	1.000	147	0%	188	27.1%	2	50%	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
DCAKD	79877	genome.wustl.edu	37	17	43101812	43101812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128631.1	-1	validated	p.P229S	0.998	92	0%	132	30.3%	31	54.8%	unknown(0)	-	-	NULL
FMNL1	752	genome.wustl.edu	37	17	43323872	43323872	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005892.3	+1	reviewed	p.V1071A	1.000	127	0%	227	29.5%	3	0%	unknown(0)	tolerated(0.98)	-	NULL
TBKBP1	9755	genome.wustl.edu	37	17	45774521	45774521	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014726.2	+1	validated	p.V139M	0.996	157	0%	272	18%	4	0%	probably_damaging(0.99)	tolerated(0.23)	deleterious(0.483)	NULL
MRPL10	124995	genome.wustl.edu	37	17	45904012	45904012	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145255.2	-1	reviewed	p.P175S	0.991	75	0%	117	23.1%	51	41.1%	benign(0.097)	tolerated(0.1)	neutral(0.294)	NULL
SLC35B1	10237	genome.wustl.edu	37	17	47781533	47781533	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005827.1	-1	provisional	p.A195V	1.000	317	0%	442	29.6%	118	42.3%	possibly_damaging(0.671)	deleterious(0.02)	deleterious(0.621)	HMMPfam_UAA
XYLT2	64132	genome.wustl.edu	37	17	48434050	48434050	+	Missense_Mutation	SNP	T	T	C	rs145209463		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022167.2	+1	reviewed	p.M554T	0.993	55	0%	56	25%	17	47%	benign(0)	tolerated(0.53)	neutral(0.007)	NULL
LRRC59	55379	genome.wustl.edu	37	17	48462480	48462480	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018509.3	-1	validated	p.P225	0.020	340	0%	377	34.5%	181	44.7%	-	-	-	NULL
RSAD1	55316	genome.wustl.edu	37	17	48560721	48560721	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018346.1	+1	provisional	p.P309S	0.989	91	0%	95	30.5%	11	27.2%	benign(0.024)	tolerated(0.79)	neutral(0.002)	HMMPfam_HemN_C,superfamily_SSF102114
SPATA20	64847	genome.wustl.edu	37	17	48628660	48628660	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000503063	+1	known	p.I502S	0.000	16	0.000	9	0.444	0	-	-	-	-	NULL
KIF2B	84643	genome.wustl.edu	37	17	51902247	51902247	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032559.4	+1	validated	p.Q618R	0.000	324	0%	421	34.4%	0	-	benign(0.049)	tolerated(0.94)	neutral(0.003)	NULL
AKAP1	8165	genome.wustl.edu	37	17	55183902	55183902	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003488.3	+1	reviewed	p.A359	0.385	190	0%	259	32%	24	37.5%	-	-	-	HMMPfam_RII_binding_1
SKA2	348235	genome.wustl.edu	37	17	57196747	57196747	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182620.3	-1	validated	p.R77H	0.100	532	0.2%	607	36.1%	30	43.3%	benign(0.006)	tolerated(0.05)	neutral(0.345)	NULL
APPBP2	10513	genome.wustl.edu	37	17	58529256	58529256	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006380.2	-1	reviewed	p.R497*	1.000	171	0.6%	155	29.7%	17	11.7%	-	-	-	HMMSmart_SM00028,superfamily_TPR-like
EFCAB3	146779	genome.wustl.edu	37	17	60491150	60491150	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144933.1	+1	validated	p.I361V	0.101	245	0%	221	30.8%	0	-	possibly_damaging(0.869)	deleterious(0)	deleterious(0.782)	NULL
TANC2	26115	genome.wustl.edu	37	17	61278158	61278158	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025185.3	+1	validated	p.S129R	1.000	318	0%	282	19.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FTSJ3	117246	genome.wustl.edu	37	17	61898462	61898462	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017647.3	-1	reviewed	p.R634C	0.000	98	0%	122	23%	42	40.4%	probably_damaging(0.97)	tolerated(0.06)	deleterious(0.735)	NULL
ENSG00000232457	0	genome.wustl.edu	37	17	62950334	62950334	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000413214	+1	known	p.G31	0.717	136	0%	174	28.2%	0	-	-	-	-	superfamily_MFS general substrate transporter
PRKCA	5578	genome.wustl.edu	37	17	64731714	64731714	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002737.2	+1	reviewed	p.K388	1.000	193	0%	332	30.4%	7	42.8%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PITPNC1	26207	genome.wustl.edu	37	17	65529056	65529056	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012417.2	+1	reviewed	p.Y63H	1.000	71	0%	122	36.9%	55	43.6%	benign(0.032)	tolerated(1)	neutral(0.002)	HMMPfam_IP_trans,superfamily_Bet v1-like
SOX9	6662	genome.wustl.edu	37	17	70118957	70118957	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000346.3	+1	reviewed	p.R177W	1.000	36	0%	53	32.1%	64	45.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_HMG-box
SOX9	6662	genome.wustl.edu	37	17	70119768	70119768	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000346.3	+1	reviewed	p.R257H	1.000	41	0%	40	22.5%	52	36.5%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	NULL
CD300LB	124599	genome.wustl.edu	37	17	72522141	72522141	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174892.2	-1	validated	p.K76R	0.000	325	0%	331	27.5%	0	-	benign(0.081)	tolerated(0.32)	neutral(0.030)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
MIF4GD	57409	genome.wustl.edu	37	17	73262994	73262994	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020679.2	-1	validated	p.N200D	1.000	91	0%	103	30.1%	33	48.4%	probably_damaging(0.996)	tolerated(0.21)	deleterious(0.506)	HMMPfam_MIF4G,superfamily_ARM-type_fold
GRB2	2885	genome.wustl.edu	37	17	73322034	73322034	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002086.4	-1	reviewed	p.A82T	1.000	185	0.5%	228	26.8%	70	54.2%	probably_damaging(0.979)	tolerated(0.06)	deleterious(0.744)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
UNC13D	201294	genome.wustl.edu	37	17	73839346	73839346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199242.2	-1	reviewed	p.R52Q	1.000	31	0%	42	26.2%	18	33.3%	benign(0.012)	tolerated(0.3)	neutral(0.029)	NULL
FBF1	85302	genome.wustl.edu	37	17	73908311	73908311	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080542.1	-1	provisional	p.H1094N	0.001	50	0%	76	35.5%	28	50%	possibly_damaging(0.667)	tolerated(0.13)	deleterious(0.488)	NULL
EVPL	2125	genome.wustl.edu	37	17	74017803	74017803	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001988.2	-1	validated	p.D289	0.951	23	0%	37	45.9%	24	37.5%	-	-	-	HMMSmart_SM00150,superfamily_Spectrin repeat
SEPT9	10801	genome.wustl.edu	37	17	75484880	75484880	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113491.1	+1	reviewed	p.R399H	1.000	144	0%	163	28.2%	225	43.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Septin,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH17	8632	genome.wustl.edu	37	17	76454711	76454711	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000389840	-1	known	p.A3291S	0.336	457	0%	556	20%	0	-	benign(0.024)	tolerated(0.36)	neutral(0.021)	NULL
SLC26A11	284129	genome.wustl.edu	37	17	78222443	78222443	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173626.3	+1	reviewed	p.R498W	0.994	72	0%	77	19.5%	13	53.8%	benign(0.081)	deleterious(0.01)	neutral(0.412)	HMMPfam_STAS,superfamily_STAS
AATK	9625	genome.wustl.edu	37	17	79095472	79095472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080395.2	-1	reviewed	p.A755V	0.003	12	0%	28	32.1%	0	-	benign(0.108)	deleterious(0)	neutral(0.453)	NULL
SLC38A10	124565	genome.wustl.edu	37	17	79249910	79249910	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037984.1	-1	validated	p.A257	0.044	66	0%	105	29.5%	40	45%	-	-	-	HMMPfam_Aa_trans
BAHCC1	57597	genome.wustl.edu	37	17	79414442	79414442	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000436173	+1	known	p.R1182*	0.000	22	0%	41	34.1%	1	100%	-	-	-	NULL
BAHCC1	57597	genome.wustl.edu	37	17	79425860	79425860	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000436173	+1	known	p.R1824C	1.000	34	0%	25	20%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C17orf70	80233	genome.wustl.edu	37	17	79514606	79514606	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025161.5	-1	validated	p.T350M	0.001	78	0%	105	40%	22	22.7%	benign(0.406)	tolerated(0.1)	neutral(0.417)	NULL
FASN	2194	genome.wustl.edu	37	17	80042524	80042524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004104.4	-1	reviewed	p.R1545C	1.000	78	0%	89	33.7%	95	42.1%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_GroES-like
ZNF750	79755	genome.wustl.edu	37	17	80788076	80788076	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024702.2	-1	reviewed	p.A705V	0.000	148	0%	216	35.6%	4	50%	benign(0)	tolerated(0.87)	neutral(0.001)	NULL
COLEC12	81035	genome.wustl.edu	37	18	331711	331711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130386.2	-1	validated	p.E674K	1.000	380	0%	445	31.9%	0	-	possibly_damaging(0.653)	-	-	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
METTL4	64863	genome.wustl.edu	37	18	2567101	2567101	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022840.3	-1	validated	p.F39L	0.000	167	0%	238	12.6%	2	50%	benign(0.003)	tolerated(0.23)	neutral(0.042)	NULL
SMCHD1	23347	genome.wustl.edu	37	18	2728475	2728475	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015295.2	+1	validated	p.V932L	1.000	280	0%	223	30.5%	6	16.6%	probably_damaging(0.974)	tolerated(0.37)	neutral(0.435)	NULL
EMILIN2	84034	genome.wustl.edu	37	18	2909747	2909747	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032048.2	+1	validated	p.P918	1.000	264	0%	320	37.2%	15	13.3%	-	-	-	HMMPfam_C1q,superfamily_TNF_like
LPIN2	9663	genome.wustl.edu	37	18	2923856	2923856	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014646.2	-1	reviewed	p.S697	0.998	262	0.4%	287	28.9%	2	50%	-	-	-	HMMPfam_LNS2,HMMSmart_LNS2,superfamily_SSF56784
MYOM1	8736	genome.wustl.edu	37	18	3102520	3102520	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003803.3	-1	reviewed	p.V1176A	0.720	326	0%	339	33.9%	0	-	benign(0.01)	tolerated(0.76)	neutral(0.002)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
MYOM1	8736	genome.wustl.edu	37	18	3119939	3119939	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003803.3	-1	reviewed	p.M1016V	0.993	103	0%	134	34.3%	0	-	benign(0)	tolerated(0.53)	neutral(0.007)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
DLGAP1	9229	genome.wustl.edu	37	18	3729264	3729264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004746.2	-1	provisional	p.R488C	1.000	18	0%	37	45.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LAMA1	284217	genome.wustl.edu	37	18	7032152	7032152	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005559.2	-1	validated	p.R729	0.000	117	0%	144	27.1%	0	-	-	-	-	HMMSmart_SM00180,PatternScan_EGF_LAM_1,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin
ENSG00000168738	0	genome.wustl.edu	37	18	10800433	10800433	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000302079	-1	known	p.H299R	1.000	163	0%	183	25.1%	0	-	benign(0.013)	tolerated(0.59)	neutral(0.005)	NULL
ENSG00000153081	0	genome.wustl.edu	37	18	11619707	11619707	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000283050	-1	known	p.C285Y	0.013	93	0%	169	31.4%	0	-	possibly_damaging(0.76)	tolerated(0.15)	deleterious(0.522)	HMMPfam_NPIP
PTPN2	5771	genome.wustl.edu	37	18	12794321	12794321	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002828.2	-1	reviewed	p.A402T	0.994	299	0%	316	34.2%	18	88.8%	possibly_damaging(0.507)	deleterious(0.01)	deleterious(0.575)	NULL
MC5R	4161	genome.wustl.edu	37	18	13825978	13825978	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005913.1	+1	provisional	p.Y72H	1.000	222	0%	271	32.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ANKRD30B	374860	genome.wustl.edu	37	18	14763986	14763986	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145029.1	+1	validated	p.C374	0.025	114	0%	131	22.9%	0	-	-	-	-	NULL
ZNF521	25925	genome.wustl.edu	37	18	22804579	22804579	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015461.2	-1	validated	p.K1101	1.000	201	0%	145	33.1%	0	-	-	-	-	NULL
DSC3	1825	genome.wustl.edu	37	18	28609589	28609589	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001941.3	-1	reviewed	p.S120	0.003	152	0%	154	31.2%	0	-	-	-	-	superfamily_Cadherin-like
DSG4	147409	genome.wustl.edu	37	18	28993483	28993483	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134453.1	+1	reviewed	p.T1035	0.653	81	0%	117	28.2%	0	-	-	-	-	NULL
TRAPPC8	22878	genome.wustl.edu	37	18	29487515	29487515	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014939.3	-1	validated	p.V433M	1.000	243	0%	223	25.6%	4	25%	possibly_damaging(0.789)	tolerated(0.12)	deleterious(0.556)	NULL
MEP1B	4225	genome.wustl.edu	37	18	29787295	29787295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005925.2	+1	validated	p.H210Y	1.000	151	0%	174	33.3%	0	-	benign(0.42)	deleterious(0)	deleterious(0.581)	"HMMPfam_Astacin,superfamily_Metalloproteases (""zincins"") catalytic domain"
ASXL3	80816	genome.wustl.edu	37	18	31318763	31318763	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030632.1	+1	provisional	p.C465	0.998	132	0%	78	25.6%	0	-	-	-	-	NULL
NOL4	8715	genome.wustl.edu	37	18	31803196	31803196	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003787.3	-1	validated	p.Y8H	1.000	94	0%	119	27.7%	0	-	benign(0.304)	tolerated(0.48)	neutral(0.105)	NULL
GALNT1	2589	genome.wustl.edu	37	18	33283600	33283600	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020474.3	+1	reviewed	p.D509G	1.000	259	0%	238	31.9%	70	40%	possibly_damaging(0.915)	tolerated(0.08)	deleterious(0.666)	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,superfamily_Ricin B-like lectins
RPRD1A	55197	genome.wustl.edu	37	18	33607273	33607273	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018170.3	-1	provisional	p.T163S	1.000	157	0%	159	30.8%	19	42.1%	possibly_damaging(0.808)	tolerated(0.68)	neutral(0.306)	NULL
CELF4	56853	genome.wustl.edu	37	18	34854349	34854349	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020180.3	-1	reviewed	p.Q242	1.000	30	0%	32	40.6%	0	-	-	-	-	NULL
RNF165	494470	genome.wustl.edu	37	18	44013367	44013367	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152470.2	+1	validated	p.D92	1.000	26	0%	27	40.7%	0	-	-	-	-	NULL
ST8SIA5	29906	genome.wustl.edu	37	18	44272211	44272211	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013305.4	-1	reviewed	p.Q78*	1.000	164	0%	206	28.2%	1	0%	-	-	-	NULL
DYM	54808	genome.wustl.edu	37	18	46783417	46783417	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017653.3	-1	reviewed	p.R475C	0.994	269	0%	254	31.1%	26	50%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_Dymeclin
CXXC1	30827	genome.wustl.edu	37	18	47812296	47812296	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001101654.1	-1	validated	p.H154Q	0.926	72	0%	79	38%	52	46.1%	unknown(0)	tolerated(0.34)	-	NULL
ME2	4200	genome.wustl.edu	37	18	48473420	48473420	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002396.4	+1	reviewed	p.F541L	1.000	168	0%	189	30.2%	29	31%	benign(0.001)	tolerated(0.14)	neutral(0.249)	superfamily_NAD(P)-bd
DCC	1630	genome.wustl.edu	37	18	51013309	51013309	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005215.3	+1	reviewed	p.F1293	0.416	178	0%	207	33.3%	0	-	-	-	-	HMMPfam_Neogenin_C
ALPK2	115701	genome.wustl.edu	37	18	56182259	56182259	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052947.3	-1	validated	p.A1999T	1.000	172	0%	220	28.6%	0	-	possibly_damaging(0.561)	tolerated(0.08)	deleterious(0.491)	HMMPfam_Alpha_kinase,HMMSmart_SM00811,superfamily_Protein kinase-like (PK-like)
KIAA1468	57614	genome.wustl.edu	37	18	59949537	59949537	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020854.3	+1	validated	e25-2	1.000	237	0%	239	32.6%	1	0%	-	-	-	-
PHLPP1	23239	genome.wustl.edu	37	18	60570204	60570204	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194449.2	+1	validated	p.V306I	0.013	207	0%	210	31%	7	28.5%	benign(0.01)	tolerated(0.47)	neutral(0.011)	superfamily_L domain-like
VPS4B	9525	genome.wustl.edu	37	18	61064394	61064394	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004869.3	-1	reviewed	p.T322M	0.209	357	0%	370	39.2%	56	48.2%	probably_damaging(0.956)	deleterious(0)	deleterious(0.844)	HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
RTTN	25914	genome.wustl.edu	37	18	67753848	67753848	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173630.3	-1	validated	e32+1	1.000	196	0%	164	24.4%	0	-	-	-	-	-
RTTN	25914	genome.wustl.edu	37	18	67759947	67759947	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173630.3	-1	validated	p.L1333	1.000	227	0%	261	31.8%	1	0%	-	-	-	NULL
ZNF407	55628	genome.wustl.edu	37	18	72343403	72343403	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017757.2	+1	reviewed	p.V143A	0.000	179	0%	207	33.8%	1	100%	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
GALR1	2587	genome.wustl.edu	37	18	74962958	74962958	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001480.3	+1	reviewed	p.A152T	1.000	39	0%	52	42.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MIER2	54531	genome.wustl.edu	37	19	307463	307463	+	Silent	SNP	C	C	T	rs2289868		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017550.1	-1	provisional	p.S424	0.454	11	0%	18	22.2%	23	17.3%	-	-	-	NULL
HCN2	610	genome.wustl.edu	37	19	603797	603797	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001194.3	+1	validated	p.V296M	1.000	123	0%	227	15%	1	0%	possibly_damaging(0.949)	deleterious(0)	deleterious(0.838)	HMMPfam_Ion_trans,superfamily_SSF81324
FSTL3	10272	genome.wustl.edu	37	19	681547	681547	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005860.2	+1	reviewed	p.A240	0.456	26	0%	37	21.6%	23	26%	-	-	-	HMMSmart_SM00280,HMMPfam_Kazal_2,superfamily_Kazal-type serine protease inhibitors
KLK10	5655	genome.wustl.edu	37	19	691881	691881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_214710.3	-1	validated	p.A120T	0.000	74	0%	106	23.6%	0	-	benign(0.001)	tolerated(0.24)	neutral(0.037)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
C19orf21	126353	genome.wustl.edu	37	19	758459	758459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173481.2	+1	predicted	p.R505C	0.021	52	0%	46	23.9%	126	53.9%	benign(0.377)	deleterious(0.03)	deleterious(0.485)	NULL
ABCA7	10347	genome.wustl.edu	37	19	1042361	1042361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019112.3	+1	reviewed	p.D155N	0.005	49	0%	70	22.9%	14	42.8%	unknown(0)	-	-	NULL
SBNO2	22904	genome.wustl.edu	37	19	1111055	1111055	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014963.2	-1	validated	p.G949	0.962	88	0%	66	31.8%	165	39.3%	-	-	-	NULL
NDUFS7	374291	genome.wustl.edu	37	19	1393315	1393315	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024407.4	+1	reviewed	p.D177G	1.000	58	0%	51	39.2%	241	41.9%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	HMMPfam_Oxidored_q6,PatternScan_COMPLEX1_20K,superfamily_Nickel-iron hydrogenase small subunit
ATP8B3	148229	genome.wustl.edu	37	19	1792052	1792052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138813.2	-1	reviewed	p.R713H	0.041	30	0%	20	35%	0	-	probably_damaging(0.99)	deleterious(0.03)	deleterious(0.806)	superfamily_SSF56784,superfamily_SSF81660
REXO1	57455	genome.wustl.edu	37	19	1828261	1828261	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020695.3	-1	validated	p.P176Q	0.002	8	0.000	24	0.375	5	60%	benign(0.293)	deleterious(0.05)	neutral(0.436)	NULL
CSNK1G2	1455	genome.wustl.edu	37	19	1978657	1978657	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001319.6	+1	validated	p.L119	1.000	18	0%	30	36.7%	53	39.6%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
BTBD2	55643	genome.wustl.edu	37	19	1990753	1990753	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017797.3	-1	reviewed	p.D251	0.953	170	0%	214	27.6%	86	34.8%	-	-	-	HMMPfam_BACK
DOT1L	84444	genome.wustl.edu	37	19	2189732	2189732	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032482.2	+1	validated	p.F68L	1.000	39	0%	70	10%	11	18.1%	possibly_damaging(0.499)	deleterious(0.02)	deleterious(0.549)	superfamily_SSF53335
DOT1L	84444	genome.wustl.edu	37	19	2213545	2213545	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032482.2	+1	validated	p.N522S	0.996	82	0%	144	27.8%	11	54.5%	probably_damaging(0.973)	deleterious(0.01)	deleterious(0.821)	NULL
DIRAS1	148252	genome.wustl.edu	37	19	2717777	2717777	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145173.3	-1	validated	p.V10M	1.000	47	0%	48	31.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_RAS,HMMPfam_Ras,superfamily_SSF52540
TLE2	7089	genome.wustl.edu	37	19	2997883	2997883	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003260.4	-1	validated	p.G732V	1.000	244	0%	275	21.1%	49	57.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
CELF5	60680	genome.wustl.edu	37	19	3282370	3282370	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021938.3	+1	reviewed	p.L305	1.000	88	0%	94	31.9%	0	-	-	-	-	NULL
MATK	4145	genome.wustl.edu	37	19	3779022	3779022	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002378.3	-1	reviewed	p.K390E	1.000	40	0%	51	21.6%	0	-	possibly_damaging(0.669)	deleterious(0)	deleterious(0.681)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
EEF2	1938	genome.wustl.edu	37	19	3977878	3977878	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001961.3	-1	reviewed	p.V669A	1.000	74	0%	83	30.1%	2509	44.4%	benign(0.098)	deleterious(0.03)	neutral(0.372)	HMMPfam_EFG_IV,superfamily_Ribosomal protein S5 domain 2-like
CCDC94	55702	genome.wustl.edu	37	19	4247164	4247164	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018074.4	+1	provisional	p.L7	0.999	429	0%	656	35.8%	14	50%	-	-	-	HMMPfam_DUF572
FSD1	79187	genome.wustl.edu	37	19	4312031	4312031	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024333.2	+1	reviewed	p.T228I	0.891	38	0%	51	41.2%	2	0%	possibly_damaging(0.736)	deleterious(0.02)	deleterious(0.652)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
CHAF1A	10036	genome.wustl.edu	37	19	4443092	4443092	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000344143	+1	known	p.N720K	0.000	28	0%	33	39.4%	51	37.2%	unknown(0)	-	-	NULL
UBXN6	80700	genome.wustl.edu	37	19	4454061	4454061	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025241.2	-1	validated	p.Q38R	0.009	229	0%	267	31.5%	65	60%	benign(0.276)	tolerated(0.43)	neutral(0.043)	NULL
PLIN5	440503	genome.wustl.edu	37	19	4531784	4531784	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013706.2	-1	validated	p.T37	0.001	9	0.000	13	0.308	2	0%	-	-	-	HMMPfam_Perilipin
SEMA6B	10501	genome.wustl.edu	37	19	4555495	4555495	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032108.2	-1	reviewed	p.L185I	1.000	175	0%	237	21.5%	3	0%	probably_damaging(0.963)	tolerated(0.36)	neutral(0.426)	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
DPP9	91039	genome.wustl.edu	37	19	4683626	4683626	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139159.4	-1	reviewed	p.E732K	1.000	57	0%	75	32%	36	52.7%	possibly_damaging(0.49)	tolerated(0.51)	neutral(0.172)	HMMPfam_Peptidase_S9,superfamily_SSF53474
LOC100133070	100133070	genome.wustl.edu	37	19	4793732	4793732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001719147.1	-1	model	p.V82I	0.924	49	0%	78	39.7%	25	40%	-	-	-	NULL
PTPRS	5802	genome.wustl.edu	37	19	5238951	5238951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002850.3	-1	reviewed	p.R610W	0.051	22	0%	24	20.8%	15	46.6%	probably_damaging(0.997)	tolerated(0.18)	deleterious(0.522)	superfamily_Fibronectin type III
SAFB2	9667	genome.wustl.edu	37	19	5595452	5595452	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014649.2	-1	validated	p.S613	0.041	407	0.2%	517	21.7%	41	34.1%	-	-	-	superfamily_SSF54928
LONP1	9361	genome.wustl.edu	37	19	5711909	5711909	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004793.2	-1	reviewed	p.D248G	0.619	55	0%	62	17.7%	47	44.6%	benign(0)	tolerated(0.42)	neutral(0.014)	HMMPfam_LON,HMMSmart_LON
DUS3L	56931	genome.wustl.edu	37	19	5790344	5790344	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020175.2	-1	validated	p.Y34C	1.000	79	0%	69	14.5%	21	9.5%	possibly_damaging(0.71)	tolerated(0.18)	neutral(0.312)	NULL
TNFSF14	8740	genome.wustl.edu	37	19	6669948	6669948	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003807.3	-1	reviewed	p.L45M	0.649	50	0%	56	44.6%	0	-	possibly_damaging(0.527)	tolerated(0.07)	deleterious(0.497)	NULL
C3	718	genome.wustl.edu	37	19	6684649	6684649	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000064.2	-1	reviewed	p.Y1348D	0.587	464	0%	566	33%	2372	49.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C3	718	genome.wustl.edu	37	19	6697357	6697357	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000064.2	-1	reviewed	p.V932M	1.000	106	0%	103	28.2%	1476	47.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
INSR	3643	genome.wustl.edu	37	19	7166347	7166347	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000208.2	-1	reviewed	p.D560V	1.000	178	0%	195	27.2%	9	44.4%	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	HMMSmart_SM00060,superfamily_Fibronectin type III
ARHGEF18	23370	genome.wustl.edu	37	19	7506653	7506653	+	Splice_Site	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130955.1	+1	reviewed	e2+2	0.999	184	0%	269	33.5%	0	-	-	-	-	-
LRRC8E	80131	genome.wustl.edu	37	19	7963967	7963967	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025061.3	+1	validated	p.I187T	0.000	71	0%	95	30.5%	12	41.6%	benign(0)	tolerated(0.6)	neutral(0.004)	NULL
MUC16	94025	genome.wustl.edu	37	19	9090867	9090867	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.E316	0.000	241	0%	255	31.4%	0	-	-	-	-	NULL
OR7D4	125958	genome.wustl.edu	37	19	9324655	9324655	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005191.1	-1	provisional	p.P287S	1.000	108	0%	117	32.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ZNF426	79088	genome.wustl.edu	37	19	9639398	9639398	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024106.1	-1	provisional	p.T441	0.932	245	0%	308	29.9%	2	50%	-	-	-	HMMSmart_SM00614,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
RDH8	50700	genome.wustl.edu	37	19	10132330	10132330	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015725.2	+1	validated	p.T281A	0.483	147	0%	141	29.8%	0	-	benign(0)	tolerated(0.58)	neutral(0.005)	NULL
S1PR2	9294	genome.wustl.edu	37	19	10335502	10335502	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004230.3	-1	validated	p.T27M	0.002	93	0%	96	27.1%	3	33.3%	benign(0.004)	tolerated(0.16)	neutral(0.059)	superfamily_SSF81321
ICAM5	7087	genome.wustl.edu	37	19	10402825	10402825	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003259.3	+1	reviewed	p.Y263C	0.745	24	0%	38	26.3%	4	75%	possibly_damaging(0.872)	deleterious(0.01)	deleterious(0.745)	superfamily_Immunoglobulin
TSPAN16	26526	genome.wustl.edu	37	19	11411948	11411948	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012466.2	+1	reviewed	p.D138	0.000	301	0%	362	33.1%	0	-	-	-	-	superfamily_Tetraspanin,HMMPfam_Tetraspannin
RAB3D	9545	genome.wustl.edu	37	19	11448018	11448018	+	Missense_Mutation	SNP	C	C	T	rs144965675	by1000genomes	TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004283.3	-1	validated	p.D20N	1.000	163	0%	233	33%	27	33.3%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	superfamily_SSF52540
CNN1	1264	genome.wustl.edu	37	19	11657756	11657756	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001299.4	+1	validated	p.Q121R	1.000	106	0%	156	17.3%	7	0%	benign(0.216)	deleterious(0.05)	neutral(0.366)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
WDR83	84292	genome.wustl.edu	37	19	12786340	12786340	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099737.2	+1	reviewed	p.A268P	0.553	43	0%	61	24.6%	15	20%	benign(0)	tolerated(0.21)	neutral(0.044)	HMMSmart_SM00320,superfamily_WD40 repeat-like
DNASE2	1777	genome.wustl.edu	37	19	12989361	12989361	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001375.2	-1	reviewed	p.Y182H	0.996	240	0%	375	33.1%	102	46%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DNase_II
ZSWIM4	65249	genome.wustl.edu	37	19	13910606	13910606	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023072.2	+1	validated	p.E76K	1.000	164	0%	202	31.2%	5	40%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
SAMD1	90378	genome.wustl.edu	37	19	14200064	14200064	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138352.1	-1	provisional	p.R249	0.998	227	0%	356	32.3%	52	40.3%	-	-	-	NULL
LPHN1	22859	genome.wustl.edu	37	19	14281581	14281581	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008701.2	-1	reviewed	p.V103M	1.000	115	0%	118	35.6%	5	40%	possibly_damaging(0.805)	tolerated(0.16)	neutral(0.362)	HMMPfam_Gal_Lectin
PKN1	5585	genome.wustl.edu	37	19	14557323	14557323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_213560.1	+1	reviewed	p.A193V	0.934	30	0%	27	40.7%	24	20.8%	benign(0.007)	tolerated(0.34)	neutral(0.023)	HMMPfam_HR1,HMMSmart_SM00742,superfamily_HR1 repeat
PKN1	5585	genome.wustl.edu	37	19	14562725	14562725	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_213560.1	+1	reviewed	p.G358E	0.746	87	0%	58	34.5%	16	43.7%	possibly_damaging(0.49)	deleterious(0.02)	deleterious(0.546)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
NOTCH3	4854	genome.wustl.edu	37	19	15272434	15272434	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000435.2	-1	reviewed	p.D2002G	1.000	60	0%	75	28%	73	43.8%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Ank,superfamily_Ankyrin repeat
NOTCH3	4854	genome.wustl.edu	37	19	15292508	15292508	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000435.2	-1	reviewed	p.C891S	1.000	39	0%	36	38.9%	60	36.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_CA,superfamily_EGF/Laminin
EPS15L1	58513	genome.wustl.edu	37	19	16536053	16536053	+	Silent	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021235.1	-1	provisional	p.P211	0.016	53	0%	92	39.1%	14	71.4%	-	-	-	HMMSmart_EH,superfamily_SSF47473
NWD1	284434	genome.wustl.edu	37	19	16905361	16905361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007525.2	+1	validated	p.A966T	0.997	219	0%	251	28.3%	1	100%	benign(0.018)	tolerated(0.23)	neutral(0.042)	superfamily_WD40 repeat-like
NWD1	284434	genome.wustl.edu	37	19	16918719	16918719	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007525.2	+1	validated	p.S1218	0.005	127	0%	134	32.8%	1	0%	-	-	-	superfamily_WD40 repeat-like
MYO9B	4650	genome.wustl.edu	37	19	17213222	17213222	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004145.3	+1	reviewed	p.N232S	1.000	61	0%	75	42.7%	19	31.5%	possibly_damaging(0.917)	tolerated(0.11)	deleterious(0.639)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYO9B	4650	genome.wustl.edu	37	19	17320502	17320502	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004145.3	+1	reviewed	p.L1911H	0.605	175	0%	193	32.6%	48	43.7%	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	NULL
ANO8	57719	genome.wustl.edu	37	19	17435671	17435671	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020959.2	-1	validated	p.A1062	0.063	28	0%	36	19.4%	17	29.4%	-	-	-	NULL
PGLS	25796	genome.wustl.edu	37	19	17628609	17628609	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012088.2	+1	validated	p.R197*	0.918	134	0%	166	36.1%	225	17.3%	-	-	-	HMMPfam_Glucosamine_iso,superfamily_SSF100950
FCHO1	23149	genome.wustl.edu	37	19	17885228	17885228	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015122.2	+1	validated	p.K287N	1.000	71	0%	83	24.1%	3	0%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	NULL
IL12RB1	3594	genome.wustl.edu	37	19	18174739	18174739	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005535.1	-1	reviewed	p.A522V	0.929	46	0%	35	48.6%	3	33.3%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PIK3R2	5296	genome.wustl.edu	37	19	18272782	18272782	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005027.2	+1	validated	p.E274	0.989	192	0%	256	19.1%	5	20%	-	-	-	HMMSmart_SM00324,superfamily_GTPase activation domain GAP
PIK3R2	5296	genome.wustl.edu	37	19	18276972	18276972	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005027.2	+1	validated	p.E473	1.000	67	0%	95	36.8%	59	44%	-	-	-	NULL
KIAA1683	80726	genome.wustl.edu	37	19	18377277	18377277	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145304.1	-1	validated	p.T358M	0.000	263	0%	356	36%	0	-	unknown(0)	tolerated(0.08)	-	NULL
ELL	8178	genome.wustl.edu	37	19	18557131	18557131	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006532.3	-1	validated	p.S564	0.823	36	0%	42	33.3%	16	50%	-	-	-	HMMPfam_Occludin_ELL
NR2C2AP	126382	genome.wustl.edu	37	19	19313364	19313364	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176880.4	-1	validated	p.T50	0.014	52	0%	66	15.2%	62	17.7%	-	-	-	superfamily_Gal_bind_like
NCAN	1463	genome.wustl.edu	37	19	19338349	19338349	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004386.2	+1	validated	p.K640	0.043	69	0%	105	24.8%	0	-	-	-	-	NULL
CILP2	148113	genome.wustl.edu	37	19	19656414	19656414	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153221.2	+1	validated	p.R1020	0.000	14	0%	18	27.8%	4	75%	-	-	-	NULL
ZNF85	7639	genome.wustl.edu	37	19	21132685	21132685	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003429.3	+1	validated	p.E455D	0.498	90	0%	96	30.2%	4	25%	benign(0.023)	deleterious(0.01)	neutral(0.407)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF208	7757	genome.wustl.edu	37	19	22154765	22154765	+	Missense_Mutation	SNP	G	G	C	rs191756909	by1000genomes	TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007153.3	-1	provisional	p.T896S	0.997	325	0%	312	33%	0	-	possibly_damaging(0.458)	tolerated(0.11)	neutral(0.421)	superfamily_SSF57667
LOC100287226	100287226	genome.wustl.edu	37	19	22496969	22496969	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343636.1	+1	model	p.T117	0.000	23	0%	34	52.9%	0	-	-	-	-	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF98	148198	genome.wustl.edu	37	19	22574937	22574937	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098626.1	-1	validated	p.T367I	0.000	156	0%	134	22.4%	0	-	benign(0.096)	tolerated(0.33)	neutral(0.031)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF730	100129543	genome.wustl.edu	37	19	23329399	23329399	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001719792.2	+1	model	p.Y538C	0.033	20	0%	38	28.9%	2	100%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF724P	440519	genome.wustl.edu	37	19	23405577	23405577	+	Silent	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000418100	-1	known	p.S490	0.000	40	0%	40	37.5%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
URI1	8725	genome.wustl.edu	37	19	30499999	30499999	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003796.2	+1	reviewed	p.M258I	0.000	189	0%	210	28.6%	54	42.5%	benign(0)	tolerated(0.58)	neutral(0.005)	NULL
ZNF536	9745	genome.wustl.edu	37	19	30935044	30935044	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014717.1	+1	provisional	p.V192G	1.000	9	0.000	20	0.200	0	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	NULL
ZNF507	22847	genome.wustl.edu	37	19	32873800	32873800	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136156.1	+1	validated	p.Y891	0.899	120	0%	84	33.3%	3	33.3%	-	-	-	NULL
ANKRD27	84079	genome.wustl.edu	37	19	33130312	33130312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032139.2	-1	validated	p.E356K	0.996	244	0%	270	36.3%	13	61.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_VPS9,HMMSmart_VPS9,superfamily_SSF109993
KIAA0355	9710	genome.wustl.edu	37	19	34843731	34843731	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014686.3	+1	validated	p.A1028	0.990	47	0%	62	14.5%	6	16.6%	-	-	-	NULL
ZNF599	148103	genome.wustl.edu	37	19	35251020	35251020	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007248.2	-1	validated	p.C229F	0.962	189	0%	191	37.2%	0	-	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
HPN	3249	genome.wustl.edu	37	19	35551533	35551533	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002151.2	+1	reviewed	p.R208Q	1.000	61	0%	70	30%	1	100%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
LGI4	163175	genome.wustl.edu	37	19	35617879	35617879	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139284.2	-1	validated	p.V224A	1.000	46	0%	46	30.4%	0	-	possibly_damaging(0.922)	tolerated(0.26)	neutral(0.405)	HMMPfam_EPTP
FFAR3	2865	genome.wustl.edu	37	19	35862706	35862706	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000246538	+1	known	p.V149M	0.990	187	0%	242	21.9%	0	-	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMPfam_7tm_1,superfamily_SSF81321
GAPDHS	26330	genome.wustl.edu	37	19	36034283	36034283	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014364.4	+1	reviewed	p.D261	0.184	91	0%	115	26.1%	0	-	-	-	-	HMMPfam_Gp_dh_C,superfamily_SSF55347
RBM42	79171	genome.wustl.edu	37	19	36124095	36124095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024321.3	+1	provisional	p.P209S	1.000	47	0%	43	25.6%	69	50.7%	unknown(0)	deleterious(0.01)	-	NULL
MLL4	9757	genome.wustl.edu	37	19	36216690	36216690	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014727.1	+1	reviewed	p.T1286A	1.000	74	0%	58	34.5%	12	33.3%	possibly_damaging(0.45)	-	-	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD
MLL4	9757	genome.wustl.edu	37	19	36224407	36224407	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014727.1	+1	reviewed	p.G2319	0.676	58	0%	49	36.7%	12	50%	-	-	-	NULL
MLL4	9757	genome.wustl.edu	37	19	36227817	36227817	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014727.1	+1	reviewed	p.A2434	0.263	83	0%	82	30.5%	37	48.6%	-	-	-	HMMPfam_FYRC,HMMSmart_SM00542
ARHGAP33	115703	genome.wustl.edu	37	19	36278718	36278718	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052948.3	+1	reviewed	p.N923S	1.000	48	0%	39	38.5%	3	0%	possibly_damaging(0.806)	deleterious(0)	deleterious(0.748)	NULL
NPHS1	4868	genome.wustl.edu	37	19	36339590	36339590	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004646.3	-1	reviewed	p.R373	0.995	69	0%	91	14.3%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_C2-set_2,superfamily_Immunoglobulin
KIRREL2	84063	genome.wustl.edu	37	19	36348029	36348029	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199180.2	+1	validated	p.R3M	0.944	31	0%	67	29.9%	0	-	unknown(0)	-	-	NULL
APLP1	333	genome.wustl.edu	37	19	36362917	36362917	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024807.1	+1	reviewed	p.T277A	0.000	71	0%	67	34.3%	9	22.2%	benign(0.001)	tolerated(0.2)	neutral(0.049)	NULL
APLP1	333	genome.wustl.edu	37	19	36364547	36364547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024807.1	+1	reviewed	p.R330C	1.000	147	0%	191	29.8%	14	50%	possibly_damaging(0.859)	deleterious(0)	deleterious(0.776)	superfamily_CAPPD an extracellular domain of amyloid beta A4 protein
ZNF260	339324	genome.wustl.edu	37	19	37005930	37005930	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012756.2	-1	validated	p.T71A	0.001	297	0%	417	31.7%	2	50%	possibly_damaging(0.7)	tolerated(0.59)	neutral(0.256)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF382	84911	genome.wustl.edu	37	19	37100926	37100926	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032825.3	+1	validated	p.L37S	0.999	395	0%	480	29.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF569	148266	genome.wustl.edu	37	19	37905145	37905145	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152484.2	-1	validated	p.Y139H	0.003	322	0%	306	31.4%	4	50%	benign(0)	tolerated(0.54)	neutral(0.007)	NULL
RYR1	6261	genome.wustl.edu	37	19	39062760	39062760	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000540.2	+1	reviewed	p.A4616	0.033	143	0.7%	236	30.1%	0	-	-	-	-	HMMPfam_RR_TM4-6
ACTN4	81	genome.wustl.edu	37	19	39195619	39195619	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004924.3	+1	reviewed	p.T148I	1.000	236	0%	256	26.6%	241	43.1%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology
PAF1	54623	genome.wustl.edu	37	19	39876906	39876906	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019088.2	-1	provisional	p.E441K	1.000	222	0%	267	31.5%	127	43.3%	unknown(0)	tolerated(0.37)	-	HMMPfam_Paf1
PAF1	54623	genome.wustl.edu	37	19	39881473	39881473	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019088.2	-1	provisional	p.R11L	1.000	35	0%	66	13.6%	30	6.6%	possibly_damaging(0.644)	tolerated(0.06)	deleterious(0.548)	NULL
SUPT5H	6829	genome.wustl.edu	37	19	39955497	39955497	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001111020.2	+1	validated	p.E228D	1.000	95	0%	141	27.7%	60	30%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Supt5,HMMSmart_SM00738
SUPT5H	6829	genome.wustl.edu	37	19	39963058	39963058	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001111020.2	+1	validated	p.V654M	1.000	130	0%	154	21.4%	58	22.4%	benign(0.003)	tolerated(0.15)	neutral(0.241)	NULL
FCGBP	8857	genome.wustl.edu	37	19	40424137	40424137	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003890.2	-1	validated	p.D689G	0.000	95	0%	131	18.3%	0	-	benign(0.002)	tolerated(0.15)	neutral(0.241)	HMMPfam_C8
FCGBP	8857	genome.wustl.edu	37	19	40433280	40433280	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003890.2	-1	validated	p.D330G	0.997	72	0%	71	25.4%	0	-	possibly_damaging(0.915)	deleterious(0)	deleterious(0.811)	NULL
ZNF546	339327	genome.wustl.edu	37	19	40520656	40520656	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178544.3	+1	validated	p.G493	0.668	148	0%	203	33%	2	0%	-	-	-	superfamily_SSF57667
ENSG00000229113	0	genome.wustl.edu	37	19	42027642	42027642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000439847	-1	known	p.S214N	0.011	264	0%	251	38.2%	0	-	-	-	-	NULL
ZNF526	116115	genome.wustl.edu	37	19	42729787	42729787	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133444.1	+1	provisional	p.G411D	0.014	32	0%	45	28.9%	7	71.4%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_C2H2 and C2HC zinc fingers
GSK3A	2931	genome.wustl.edu	37	19	42736683	42736683	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019884.2	-1	validated	p.R417H	1.000	164	0%	159	31.4%	161	44%	benign(0.398)	deleterious(0.01)	deleterious(0.534)	superfamily_Kinase_like
MEGF8	1954	genome.wustl.edu	37	19	42856560	42856560	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001410.2	+1	validated	p.H1034L	1.000	35	0%	30	53.3%	2	100%	probably_damaging(0.998)	tolerated(0.51)	deleterious(0.483)	PatternScan_ASX_HYDROXYL,HMMSmart_EGF_CA,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_SSF57196
LYPD5	284348	genome.wustl.edu	37	19	44303021	44303021	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031749.2	-1	validated	p.T105A	0.000	39	0%	39	48.7%	17	41.1%	possibly_damaging(0.704)	tolerated(0.28)	neutral(0.285)	superfamily_Snake toxin-like
ZNF225	7768	genome.wustl.edu	37	19	44622657	44622657	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013362.2	+1	validated	p.D55	0.001	344	0%	461	36%	0	-	-	-	-	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF234	10780	genome.wustl.edu	37	19	44660711	44660711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144824.1	+1	validated	p.C181Y	1.000	372	0%	386	25.6%	0	-	benign(0.014)	deleterious(0.02)	neutral(0.384)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF227	7770	genome.wustl.edu	37	19	44738976	44738976	+	Silent	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182490.1	+1	provisional	p.L131	0.499	150	0%	169	31.4%	2	50%	-	-	-	NULL
ZNF235	9310	genome.wustl.edu	37	19	44792033	44792033	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004234.4	-1	reviewed	p.V519M	0.003	389	0%	360	33.1%	0	-	probably_damaging(0.984)	tolerated(0.1)	deleterious(0.717)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZFP112	7771	genome.wustl.edu	37	19	44832910	44832910	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083335.1	-1	validated	p.R473H	0.000	193	0%	131	25.2%	0	-	benign(0.013)	tolerated(0.09)	neutral(0.297)	superfamily_C2H2 and C2HC zinc fingers
BCAM	4059	genome.wustl.edu	37	19	45317470	45317470	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005581.3	+1	reviewed	p.R282	0.035	58	0%	73	32.9%	84	35.7%	-	-	-	HMMSmart_IGc2,superfamily_SSF48726
GEMIN7	79760	genome.wustl.edu	37	19	45593627	45593627	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007269.1	+1	reviewed	p.G85	0.838	49	0%	50	24%	39	51.2%	-	-	-	NULL
SYMPK	8189	genome.wustl.edu	37	19	46326057	46326057	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004819.2	-1	reviewed	p.I916	0.768	189	0%	342	27.5%	63	34.9%	-	-	-	NULL
SLC1A5	6510	genome.wustl.edu	37	19	47278930	47278930	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005628.2	-1	validated	p.R488H	0.403	107	0%	150	24%	113	53.9%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
ARHGAP35	2909	genome.wustl.edu	37	19	47422139	47422139	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004491.4	+1	reviewed	p.N69	1.000	170	0%	212	34.9%	3	0%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
CCDC114	93233	genome.wustl.edu	37	19	48806098	48806098	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144577.3	-1	validated	p.A328T	0.000	71	0%	70	30%	1	100%	benign(0)	tolerated(0.41)	neutral(0.015)	NULL
IZUMO1	284359	genome.wustl.edu	37	19	49245182	49245182	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182575.2	-1	validated	p.T206	0.678	83	0%	91	30.8%	0	-	-	-	-	superfamily_Immunoglobulin
PLEKHA4	57664	genome.wustl.edu	37	19	49362328	49362328	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020904.2	-1	validated	p.R254Q	0.983	5	0.000	14	0.429	2	50%	probably_damaging(0.974)	tolerated(0.21)	neutral(0.460)	NULL
PLEKHA4	57664	genome.wustl.edu	37	19	49363675	49363675	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020904.2	-1	validated	p.D136	0.995	109	0%	122	32%	2	50%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
SNRNP70	6625	genome.wustl.edu	37	19	49601948	49601948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003089.4	+1	validated	p.G127E	1.000	622	0%	871	32.3%	184	51%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
PRR12	57479	genome.wustl.edu	37	19	50098178	50098178	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020719.1	+1	validated	p.A196T	1.000	75	0%	71	40.8%	12	50%	unknown(0)	-	-	NULL
SCAF1	58506	genome.wustl.edu	37	19	50154498	50154498	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021228.2	+1	validated	p.E284D	0.051	36	0%	52	38.5%	55	47.2%	unknown(0)	deleterious(0)	-	NULL
VRK3	51231	genome.wustl.edu	37	19	50511009	50511009	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016440.3	-1	reviewed	p.S122G	0.000	177	0%	246	33.7%	24	45.8%	benign(0.002)	tolerated(0.57)	neutral(0.006)	NULL
NAPSA	9476	genome.wustl.edu	37	19	50862997	50862997	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004851.1	-1	reviewed	p.R264H	1.000	97	0%	114	40.4%	7	71.4%	possibly_damaging(0.948)	deleterious(0.02)	deleterious(0.774)	HMMPfam_Asp,superfamily_Pept_Aspartic
POLD1	5424	genome.wustl.edu	37	19	50905736	50905736	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002691.2	+1	validated	p.G262S	0.997	35	0%	50	34%	22	86.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DNA_pol_B_exo,superfamily_RNaseH_fold
SYT3	84258	genome.wustl.edu	37	19	51128670	51128670	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032298.2	-1	validated	p.I518	1.000	66	0%	99	33.3%	0	-	-	-	-	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
KLK1	3816	genome.wustl.edu	37	19	51322463	51322463	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002257.2	-1	reviewed	p.A259V	0.000	186	0%	251	29.5%	1	0%	benign(0.001)	tolerated(0.27)	neutral(0.034)	superfamily_Trypsin-like serine proteases
KLK6	5653	genome.wustl.edu	37	19	51470491	51470491	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012964.1	-1	reviewed	p.H44R	0.832	119	0%	157	29.3%	28	39.2%	benign(0.003)	tolerated(1)	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
VSIG10L	147645	genome.wustl.edu	37	19	51840604	51840604	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000335624	-1	known	p.R286	0.035	91	0%	56	26.8%	8	12.5%	-	-	-	NULL
ZNF615	284370	genome.wustl.edu	37	19	52496202	52496202	+	Silent	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198480.2	-1	provisional	p.G709	0.043	399	0%	445	29.9%	2	0%	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF841	284371	genome.wustl.edu	37	19	52569865	52569865	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136499.1	-1	validated	p.A424T	0.926	301	0%	361	28.8%	8	25%	benign(0)	tolerated(1)	-	superfamily_SSF57667
ZNF528	84436	genome.wustl.edu	37	19	52919440	52919440	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032423.2	+1	validated	p.A445	0.010	152	0%	181	34.8%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF600	162966	genome.wustl.edu	37	19	53269149	53269149	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198457.2	-1	validated	p.N620K	0.000	307	0%	311	26.7%	25	56%	possibly_damaging(0.872)	tolerated(0.18)	neutral(0.395)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF816	125893	genome.wustl.edu	37	19	53454709	53454709	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031665.1	-1	validated	p.K107E	0.000	357	0%	423	33.1%	6	66.6%	benign(0.001)	tolerated(1)	-	NULL
VN1R4	317703	genome.wustl.edu	37	19	53770555	53770555	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173857.2	-1	validated	p.K122E	0.000	221	0%	303	17.8%	0	-	probably_damaging(0.972)	deleterious(0.01)	deleterious(0.820)	HMMPfam_V1R,superfamily_Family A G protein-coupled receptor-like
ZNF765	91661	genome.wustl.edu	37	19	53910953	53910953	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040185.1	+1	provisional	p.I49F	0.000	192	0%	211	25.6%	1	0%	possibly_damaging(0.687)	deleterious(0)	deleterious(0.690)	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
PRKCG	5582	genome.wustl.edu	37	19	54403680	54403680	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002739.3	+1	reviewed	p.A461T	1.000	186	0%	178	32%	0	-	benign(0.057)	deleterious(0.03)	neutral(0.368)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
CACNG7	59284	genome.wustl.edu	37	19	54418733	54418733	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031896.3	+1	reviewed	p.V133D	1.000	340	0%	398	33.2%	0	-	possibly_damaging(0.867)	tolerated(0.07)	deleterious(0.655)	HMMPfam_PMP22_Claudin
TARM1	441864	genome.wustl.edu	37	19	54577337	54577337	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135686.1	-1	provisional	p.T165A	0.000	205	0%	212	25.9%	0	-	benign(0.006)	tolerated(0.57)	neutral(0.006)	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726
PRPF31	26121	genome.wustl.edu	37	19	54625967	54625967	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015629.3	+1	reviewed	p.T138	0.005	190	0.5%	214	37.9%	84	47.6%	-	-	-	HMMPfam_NOSIC,superfamily_Nop domain
LILRA4	23547	genome.wustl.edu	37	19	54848370	54848370	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012276.3	-1	reviewed	p.T333A	0.001	219	0%	288	26%	0	-	probably_damaging(0.988)	deleterious(0.02)	deleterious(0.821)	HMMSmart_SM00409,superfamily_Immunoglobulin
LILRA1	11024	genome.wustl.edu	37	19	55106256	55106256	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006863.1	+1	provisional	p.T66I	0.000	449	0%	495	28.3%	0	-	possibly_damaging(0.662)	tolerated(0.4)	neutral(0.250)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
RDH13	112724	genome.wustl.edu	37	19	55559732	55559732	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138412.3	-1	reviewed	p.V137A	1.000	50	0%	99	25.3%	34	44.1%	possibly_damaging(0.454)	deleterious(0)	deleterious(0.593)	PatternScan_ADH_SHORT,superfamily_NAD(P)-binding Rossmann-fold domains
PPP6R1	22870	genome.wustl.edu	37	19	55751206	55751206	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014931.3	-1	validated	p.N517	1.000	124	0%	105	38.1%	91	47.2%	-	-	-	HMMPfam_SAPS
FAM71E2	284418	genome.wustl.edu	37	19	55869746	55869746	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145402.1	-1	predicted	p.S830	0.000	73	0%	77	31.2%	0	-	-	-	-	NULL
IL11	3589	genome.wustl.edu	37	19	55879637	55879637	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000641.2	-1	reviewed	p.P124S	0.893	19	0%	20	45%	1	0%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_IL11
RPL28	6158	genome.wustl.edu	37	19	55897789	55897789	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136135.1	+1	reviewed	p.K22E	1.000	134	0%	151	29.8%	3542	42.1%	benign(0.007)	tolerated(0.43)	neutral(0.013)	HMMPfam_Ribosomal_L28e
NLRP9	338321	genome.wustl.edu	37	19	56244764	56244764	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176820.2	-1	reviewed	p.R145*	0.000	154	0%	176	30.1%	0	-	-	-	-	NULL
NLRP5	126206	genome.wustl.edu	37	19	56538692	56538692	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153447.4	+1	reviewed	p.D365N	0.056	51	0%	73	24.7%	0	-	probably_damaging(0.987)	deleterious(0.02)	deleterious(0.820)	HMMPfam_NACHT,superfamily_SSF52540
ZSCAN5B	342933	genome.wustl.edu	37	19	56701831	56701831	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080456.2	-1	validated	p.G285R	0.000	398	0%	583	33.3%	0	-	benign(0.044)	tolerated(0.17)	neutral(0.061)	NULL
ZFP28	140612	genome.wustl.edu	37	19	57066654	57066654	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020828.1	+1	provisional	p.I834F	0.044	392	0%	434	30%	0	-	possibly_damaging(0.697)	deleterious(0.02)	deleterious(0.633)	superfamily_SSF57667
ZNF71	58491	genome.wustl.edu	37	19	57133691	57133691	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021216.4	+1	validated	p.R346C	0.038	117	0%	160	38.1%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF805	390980	genome.wustl.edu	37	19	57765114	57765114	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145078.1	+1	validated	p.H176	1.000	170	0%	190	12.1%	1	0%	unknown(0)	deleterious(0)	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF135	7694	genome.wustl.edu	37	19	58572974	58572974	+	Silent	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000391699	+1	known	p.*26L	0.175	260	0%	345	28.1%	0	-	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF135	7694	genome.wustl.edu	37	19	58579348	58579348	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003436.3	+1	validated	p.C499Y	0.918	175	0%	202	23.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF132	7691	genome.wustl.edu	37	19	58951176	58951176	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003433.3	-1	validated	p.S5G	0.000	25	0%	34	20.6%	0	-	benign(0.095)	-	-	NULL
ZNF324	25799	genome.wustl.edu	37	19	58980578	58980578	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014347.1	+1	provisional	p.Y9C	1.000	139	0%	155	31.6%	6	0%	probably_damaging(0.995)	tolerated(0.17)	deleterious(0.516)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
DEFB129	140881	genome.wustl.edu	37	20	210316	210316	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080831.2	+1	validated	p.S152	0.000	341	0%	516	31.4%	0	-	-	-	-	NULL
CSNK2A1	1457	genome.wustl.edu	37	20	485865	485865	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001895.3	-1	reviewed	p.D37V	1.000	392	0%	415	32.5%	34	47%	possibly_damaging(0.598)	deleterious(0)	deleterious(0.651)	superfamily_Protein kinase-like (PK-like)
SNPH	9751	genome.wustl.edu	37	20	1277825	1277825	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014723.2	+1	reviewed	p.Y29	1.000	69	0%	68	41.2%	4	75%	-	-	-	NULL
SIRPD	128646	genome.wustl.edu	37	20	1532523	1532523	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178460.2	-1	validated	p.K79E	0.011	460	0%	446	31.4%	0	-	benign(0.071)	tolerated(0.72)	neutral(0.007)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
CPXM1	56265	genome.wustl.edu	37	20	2776025	2776025	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019609.4	-1	reviewed	p.F586	0.987	163	0%	236	20.3%	9	0%	-	-	-	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
SMOX	54498	genome.wustl.edu	37	20	4167471	4167471	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175842.1	+1	reviewed	p.A485T	1.000	161	0%	155	34.8%	4	75%	benign(0.355)	tolerated(0.23)	neutral(0.154)	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain
PRND	23627	genome.wustl.edu	37	20	4705253	4705253	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012409.2	+1	reviewed	p.S19N	0.292	32	0%	32	28.1%	0	-	possibly_damaging(0.557)	deleterious(0)	deleterious(0.635)	NULL
PRNT	149830	genome.wustl.edu	37	20	4713121	4713121	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000326539	-1	known	p.A68T	0.001	199	0%	332	31.6%	0	-	benign(0.355)	deleterious(0)	deleterious(0.557)	NULL
PLCB1	23236	genome.wustl.edu	37	20	8717719	8717719	+	Silent	SNP	C	C	T	rs189186909	by1000genomes	TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015192.2	+1	reviewed	p.Y696	0.336	361	0%	290	32.1%	2	0%	-	-	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
TASP1	55617	genome.wustl.edu	37	20	13514675	13514675	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017714.2	-1	reviewed	p.V263	0.990	182	0%	161	26.1%	4	75%	-	-	-	HMMPfam_Asparaginase_2,superfamily_SSF56235
ESF1	51575	genome.wustl.edu	37	20	13763615	13763615	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016649.3	-1	provisional	p.R58C	0.995	196	0%	279	29%	4	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CSRP2BP	57325	genome.wustl.edu	37	20	18163817	18163817	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020536.4	+1	reviewed	p.R620H	0.708	239	0%	292	29.1%	10	10%	benign(0.051)	tolerated(0.34)	neutral(0.026)	NULL
THBD	7056	genome.wustl.edu	37	20	23028961	23028961	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000361.2	-1	reviewed	p.F394S	0.406	26	0%	39	17.9%	8	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_EGF/Laminin
SYNDIG1	79953	genome.wustl.edu	37	20	24523789	24523789	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024893.1	+1	provisional	p.A19V	0.266	82	0%	91	35.2%	0	-	benign(0.001)	tolerated(0.31)	neutral(0.027)	NULL
BCL2L1	598	genome.wustl.edu	37	20	30253823	30253823	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138578.1	-1	reviewed	p.N211D	1.000	151	0%	223	33.2%	240	48.3%	possibly_damaging(0.685)	tolerated(0.81)	neutral(0.245)	superfamily_Bcl-2 inhibitors of programmed cell death
BPIFB2	80341	genome.wustl.edu	37	20	31596455	31596455	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025227.1	+1	reviewed	p.T25	0.050	52	0%	76	31.6%	0	-	-	-	-	superfamily_Bactericidal permeability-increasing protein BPI
CBFA2T2	9139	genome.wustl.edu	37	20	32207345	32207345	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005093.3	+1	reviewed	p.E157G	1.000	262	0%	260	28.8%	3	33.3%	possibly_damaging(0.91)	deleterious(0)	deleterious(0.807)	HMMPfam_TAFH,HMMSmart_SM00549
CBFA2T2	9139	genome.wustl.edu	37	20	32232290	32232290	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005093.3	+1	reviewed	p.S551	0.985	62	0%	61	14.8%	13	15.3%	-	-	-	NULL
NCOA6	23054	genome.wustl.edu	37	20	33345744	33345744	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014071.2	-1	reviewed	p.Q269	0.002	185	0.5%	212	31.1%	15	46.6%	-	-	-	NULL
MYH7B	57644	genome.wustl.edu	37	20	33576005	33576005	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020884.3	+1	reviewed	p.I551	0.997	254	0%	350	29.4%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYH7B	57644	genome.wustl.edu	37	20	33586667	33586667	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020884.3	+1	reviewed	p.S1422I	1.000	22	0%	46	43.5%	0	-	benign(0.021)	tolerated(0.09)	neutral(0.297)	HMMPfam_Myosin_tail_1
EPB41L1	2036	genome.wustl.edu	37	20	34797778	34797778	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012156.2	+1	reviewed	p.P679	0.167	32	0%	40	35%	6	50%	-	-	-	NULL
C20orf132	140699	genome.wustl.edu	37	20	35772143	35772143	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000400441	-1	known	p.N438D	0.046	385	0.3%	437	29.3%	1	100%	benign(0.059)	tolerated(0.42)	neutral(0.018)	superfamily_ARM repeat
RPRD1B	58490	genome.wustl.edu	37	20	36676795	36676795	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021215.3	+1	validated	p.N109K	1.000	225	0%	261	31%	3	100%	benign(0.005)	tolerated(0.06)	neutral(0.323)	HMMSmart_SM00582,HMMPfam_DUF618,superfamily_ENTH/VHS domain
RALGAPB	57148	genome.wustl.edu	37	20	37128248	37128248	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020336.2	+1	validated	p.S238G	1.000	296	0%	315	31.1%	5	60%	possibly_damaging(0.596)	deleterious(0.03)	deleterious(0.571)	NULL
CHD6	84181	genome.wustl.edu	37	20	40050516	40050516	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032221.3	-1	reviewed	p.G1587S	1.000	101	0%	108	40.7%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PTPRT	11122	genome.wustl.edu	37	20	41385153	41385153	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133170.3	-1	reviewed	p.R270S	1.000	87	0%	102	34.3%	0	-	possibly_damaging(0.495)	tolerated(0.25)	neutral(0.202)	superfamily_Immunoglobulin
TOX2	84969	genome.wustl.edu	37	20	42679991	42679991	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098797.1	+1	validated	p.R153W	0.997	19	0%	23	47.8%	2	0%	possibly_damaging(0.893)	deleterious(0.02)	deleterious(0.735)	NULL
WFDC5	149708	genome.wustl.edu	37	20	43739418	43739418	+	Splice_Site	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145652.2	-1	reviewed	e2-2	1.000	61	0%	87	46%	0	-	-	-	-	-
SYS1	90196	genome.wustl.edu	37	20	43995544	43995544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033542.2	+1	validated	p.R87Q	1.000	145	1.4%	180	38.3%	70	34.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SYS1
PIGT	51604	genome.wustl.edu	37	20	44044839	44044839	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015937.4	+1	reviewed	p.L15M	0.983	24	0%	27	22.2%	40	22.5%	unknown(0)	-	-	HMMPfam_Gpi16
UBE2C	11065	genome.wustl.edu	37	20	44444262	44444262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007019.2	+1	reviewed	p.T100M	1.000	180	0%	180	37.8%	199	41.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like
ZSWIM1	90204	genome.wustl.edu	37	20	44512485	44512485	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080603.4	+1	validated	p.T418	0.005	35	0%	38	26.3%	20	50%	-	-	-	NULL
ZNF335	63925	genome.wustl.edu	37	20	44578026	44578026	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022095.3	-1	reviewed	p.G1255	0.998	133	0%	178	14.6%	19	21%	-	-	-	NULL
LOC100287179	100287179	genome.wustl.edu	37	20	45085085	45085085	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343708.1	-1	model	p.K41E	0.020	57	0%	62	29%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF334	55713	genome.wustl.edu	37	20	45130416	45130416	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018102.3	-1	validated	p.E521G	0.000	195	0%	143	32.9%	0	-	benign(0.038)	deleterious(0.01)	neutral(0.408)	superfamily_SSF57667
CSE1L	1434	genome.wustl.edu	37	20	47689117	47689117	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001316.2	+1	reviewed	p.A317T	1.000	330	0%	393	30.8%	51	52.9%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMPfam_Cse1,superfamily_ARM repeat
STAU1	6780	genome.wustl.edu	37	20	47736559	47736559	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017453.2	-1	reviewed	p.Q358R	1.000	205	0%	313	34.5%	66	46.9%	possibly_damaging(0.861)	tolerated(0.09)	deleterious(0.629)	superfamily_dsRNA-binding domain-like
ZNFX1	57169	genome.wustl.edu	37	20	47865501	47865501	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021035.2	-1	validated	p.R1354W	0.001	108	0%	133	32.3%	28	60.7%	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	NULL
SLC9A8	23315	genome.wustl.edu	37	20	48481292	48481292	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015266.1	+1	validated	p.D290V	1.000	276	0%	398	34.4%	6	66.6%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_Na_H_Exchanger
FAM209A	200232	genome.wustl.edu	37	20	55100887	55100887	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012971.3	+1	validated	p.G93S	0.004	153	0%	127	33.9%	0	-	benign(0.08)	tolerated(0.74)	neutral(0.007)	NULL
NPEPL1	79716	genome.wustl.edu	37	20	57289643	57289643	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024663.3	+1	validated	p.A444T	1.000	96	0%	96	32.3%	59	44%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_M17,superfamily_Zn-dependent exopeptidases
TH1L	51497	genome.wustl.edu	37	20	57565975	57565975	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198976.1	+1	reviewed	p.A276T	1.000	59	0%	64	37.5%	62	43.5%	possibly_damaging(0.49)	tolerated(0.22)	neutral(0.205)	HMMPfam_TH1
GATA5	140628	genome.wustl.edu	37	20	61040974	61040974	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080473.4	-1	reviewed	p.P277S	1.000	101	0%	118	33.9%	0	-	benign(0.085)	deleterious(0.01)	neutral(0.412)	HMMPfam_GATA,HMMSmart_ZnF_GATA,superfamily_SSF57716
C20orf166	128826	genome.wustl.edu	37	20	61167795	61167795	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178463.3	+1	validated	p.F89L	0.000	77	0%	82	19.5%	0	-	unknown(0)	-	-	NULL
SLCO4A1	28231	genome.wustl.edu	37	20	61296341	61296341	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016354.3	+1	validated	p.A393T	1.000	179	0%	210	21.4%	201	24.8%	benign(0.016)	tolerated(0.18)	neutral(0.057)	HMMPfam_OATP,superfamily_MFS general substrate transporter
PRIC285	85441	genome.wustl.edu	37	20	62198257	62198257	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037335.2	-1	reviewed	p.W818*	1.000	22	0%	16	62.5%	15	6.6%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
ABHD16B	140701	genome.wustl.edu	37	20	62492980	62492980	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080622.3	+1	validated	p.W29*	1.000	7	0.000	16	0.312	8	62.5%	-	-	-	NULL
ABHD16B	140701	genome.wustl.edu	37	20	62493938	62493938	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080622.3	+1	validated	p.L349	0.637	10	0%	16	50%	5	0%	-	-	-	superfamily_SSF53474
IGHV1OR15-5	100384884	genome.wustl.edu	37	21	10863045	10863045	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000302092	+1	known	p.Y114C	1.000	516	0%	652	14.7%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726
TMPRSS15	5651	genome.wustl.edu	37	21	19770564	19770564	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002772.2	-1	reviewed	p.D76	0.891	303	0%	214	26.2%	0	-	-	-	-	HMMPfam_SEA,HMMSmart_SM00200,superfamily_SEA domain
LOC100288213	100288213	genome.wustl.edu	37	21	27254023	27254023	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343739.1	+1	model	p.V34I	0.095	195	0%	206	42.7%	860	47.5%	-	-	-	NULL
APP	351	genome.wustl.edu	37	21	27277345	27277345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000484.3	-1	reviewed	p.T652A	1.000	322	0%	595	29.6%	781	41.9%	benign(0.001)	tolerated(0.44)	neutral(0.013)	NULL
USP16	10600	genome.wustl.edu	37	21	30403058	30403058	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001032410.1	+1	reviewed	p.K68	0.457	227	0%	271	12.9%	13	7.6%	-	-	-	HMMPfam_zf-UBP,HMMSmart_SM00290
CLDN17	26285	genome.wustl.edu	37	21	31538801	31538801	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012131.2	-1	reviewed	p.R45	0.028	123	0%	67	25.4%	0	-	-	-	-	HMMPfam_PMP22_Claudin
KRTAP6-1	337966	genome.wustl.edu	37	21	31986107	31986107	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181602.1	-1	validated	p.G39	0.877	351	0%	402	25.4%	0	-	-	-	-	NULL
TIAM1	7074	genome.wustl.edu	37	21	32496998	32496998	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003253.2	-1	validated	p.R1383Q	0.989	185	0%	188	37.2%	0	-	possibly_damaging(0.905)	deleterious(0.01)	deleterious(0.765)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
SCAF4	57466	genome.wustl.edu	37	21	33057360	33057360	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020706.2	-1	reviewed	e19+2	1.000	102	0%	95	32.6%	5	80%	-	-	-	-
SCAF4	57466	genome.wustl.edu	37	21	33065697	33065697	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020706.2	-1	reviewed	p.R475*	0.009	290	0%	317	33.8%	13	23%	-	-	-	superfamily_RNA-binding domain RBD
MRAP	56246	genome.wustl.edu	37	21	33679007	33679007	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178817.3	+1	reviewed	p.L55F	1.000	258	0%	327	36.4%	0	-	possibly_damaging(0.822)	tolerated(0.33)	neutral(0.335)	NULL
URB1	9875	genome.wustl.edu	37	21	33717062	33717062	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014825.2	-1	validated	p.W1358*	0.990	131	0%	141	22%	6	16.6%	-	-	-	superfamily_ARM repeat
GCFC1	94104	genome.wustl.edu	37	21	34123515	34123515	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016631.3	-1	reviewed	p.A508T	1.000	249	0%	240	27.9%	9	22.2%	benign(0.344)	deleterious(0.01)	deleterious(0.514)	HMMPfam_GCFC
DOPEY2	9980	genome.wustl.edu	37	21	37602769	37602769	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005128.2	+1	validated	p.G563S	0.000	204	0%	248	30.6%	8	37.5%	benign(0)	tolerated(0.94)	-	NULL
DSCAM	1826	genome.wustl.edu	37	21	41416156	41416156	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001389.3	-1	validated	p.N1744	1.000	311	0%	461	29.5%	0	-	-	-	-	NULL
C2CD2	25966	genome.wustl.edu	37	21	43334719	43334719	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015500.1	-1	validated	p.P278S	0.000	131	0%	157	30.6%	4	100%	benign(0.001)	tolerated(0.6)	neutral(0.004)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
ABCG1	9619	genome.wustl.edu	37	21	43705996	43705996	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004915.3	+1	reviewed	p.V289I	1.000	376	0.3%	488	24%	9	22.2%	benign(0.002)	tolerated(1)	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCG1	9619	genome.wustl.edu	37	21	43706095	43706095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004915.3	+1	reviewed	p.A322S	0.998	306	0%	423	28.4%	7	14.2%	probably_damaging(0.969)	deleterious(0.04)	deleterious(0.760)	NULL
U2AF1	7307	genome.wustl.edu	37	21	44513332	44513332	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025203.1	-1	reviewed	p.E201	0.999	61	0%	90	37.8%	226	51.3%	-	-	-	NULL
AIRE	326	genome.wustl.edu	37	21	45706579	45706579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000383.2	+1	reviewed	p.G91D	0.999	52	0%	45	31.1%	0	-	benign(0.07)	deleterious(0.02)	neutral(0.388)	HMMPfam_Sp100
PFKL	5211	genome.wustl.edu	37	21	45745048	45745048	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002626.4	+1	reviewed	p.C630	1.000	72	0%	89	33.7%	338	45.5%	-	-	-	HMMPfam_PFK,superfamily_Phosphofructokinase
TSPEAR	54084	genome.wustl.edu	37	21	45947239	45947239	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144991.2	-1	provisional	p.V362D	0.246	538	0%	759	29%	0	-	benign(0.017)	tolerated(0.51)	neutral(0.009)	HMMPfam_EPTP
SLC19A1	6573	genome.wustl.edu	37	21	46951607	46951607	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194255.1	-1	validated	p.D215	0.000	33	0%	48	37.5%	17	64.7%	-	-	-	HMMPfam_Folate_carrier,superfamily_MFS general substrate transporter
MCM3AP	8888	genome.wustl.edu	37	21	47693340	47693340	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003906.3	-1	reviewed	p.Y720H	1.000	74	0%	93	37.6%	16	68.7%	probably_damaging(0.999)	tolerated(0.11)	deleterious(0.762)	HMMPfam_SAC3_GANP
PCNT	5116	genome.wustl.edu	37	21	47786895	47786895	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006031.5	+1	reviewed	p.W1002C	0.000	132	0%	186	27.4%	2	0%	benign(0.002)	tolerated(0.18)	neutral(0.056)	NULL
MICAL3	57553	genome.wustl.edu	37	22	18374263	18374263	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015241.2	-1	provisional	p.R561H	1.000	153	0.7%	187	27.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
DGCR2	9993	genome.wustl.edu	37	22	19052432	19052432	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005137.2	-1	reviewed	p.Q159	1.000	80	0%	82	40.2%	43	51.1%	-	-	-	HMMSmart_CLECT,superfamily_C-type_lectin_fold
DGCR2	9993	genome.wustl.edu	37	22	19076897	19076897	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005137.2	-1	reviewed	p.D62	0.610	44	0%	76	40.8%	52	55.7%	-	-	-	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich
SERPIND1	3053	genome.wustl.edu	37	22	21133973	21133973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000185.3	+1	reviewed	p.R125C	1.000	103	0%	106	21.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Serpin,superfamily_Serpins
TOP3B	8940	genome.wustl.edu	37	22	22326262	22326262	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003935.3	-1	reviewed	p.N124S	1.000	152	0%	235	35.7%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Prokaryotic type I DNA topoisomerase,HMMSmart_SM00493,HMMPfam_Toprim
PRAME	23532	genome.wustl.edu	37	22	22890990	22890990	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006115.3	-1	reviewed	p.S343	0.688	49	0%	44	36.4%	15	53.3%	-	-	-	superfamily_RNI-like
IGLV3-10	28803	genome.wustl.edu	37	22	23154538	23154538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390315	+1	known	p.T36M	0.000	156	0%	212	31.1%	317	0%	benign(0.249)	deleterious(0.03)	neutral(0.390)	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
GGT5	2687	genome.wustl.edu	37	22	24622121	24622121	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099781.1	-1	reviewed	p.H384	0.001	31	0%	34	26.5%	0	-	-	-	-	HMMPfam_G_glu_transpept
SPECC1L	23384	genome.wustl.edu	37	22	24718298	24718298	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145468.1	+1	validated	p.C450	1.000	85	0%	136	32.4%	9	44.4%	-	-	-	NULL
FAM211B	388886	genome.wustl.edu	37	22	24982245	24982245	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207644.2	-1	validated	p.D186G	1.000	53	0%	67	26.9%	25	32%	benign(0.264)	deleterious(0.01)	neutral(0.433)	superfamily_RNI-like
SGSM1	129049	genome.wustl.edu	37	22	25264720	25264720	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039948.2	+1	validated	p.S397G	0.998	141	0.7%	174	27.6%	0	-	benign(0.089)	tolerated(0.37)	neutral(0.025)	NULL
MN1	4330	genome.wustl.edu	37	22	28147005	28147005	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000424656	-1	known	p.R72*	1.000	97	0%	131	27.5%	9	44.4%	-	-	-	NULL
MN1	4330	genome.wustl.edu	37	22	28194827	28194827	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002430.2	-1	reviewed	p.R569W	1.000	12	0%	10	50%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNRF3	84133	genome.wustl.edu	37	22	29444383	29444383	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032173.2	+1	validated	p.R207W	0.999	140	0%	168	29.8%	7	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box
AP1B1	162	genome.wustl.edu	37	22	29747174	29747174	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127.3	-1	reviewed	p.A381T	1.000	121	0%	155	29.7%	90	52.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Adaptin_N,superfamily_ARM repeat
SEC14L4	284904	genome.wustl.edu	37	22	30886166	30886166	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174977.3	-1	reviewed	p.V383	1.000	182	0%	373	36.7%	0	-	unknown(0)	-	-	superfamily_Supernatant protein factor (SPF) C-terminal domain
OSBP2	23762	genome.wustl.edu	37	22	31091325	31091325	+	Silent	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030758.3	+1	reviewed	p.S143	0.000	27	0%	48	39.6%	2	100%	-	-	-	NULL
SMTN	6525	genome.wustl.edu	37	22	31493037	31493037	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_134270.1	+1	reviewed	p.R694C	1.000	104	0%	104	30.8%	34	35.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PRR14L	253143	genome.wustl.edu	37	22	32111910	32111910	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173566.2	-1	validated	p.N639D	0.000	303	0%	327	33%	3	33.3%	possibly_damaging(0.915)	tolerated(0.27)	neutral(0.400)	NULL
SYN3	8224	genome.wustl.edu	37	22	32914264	32914264	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003490.3	-1	reviewed	p.Q459R	1.000	108	0%	145	25.5%	0	-	unknown(0)	tolerated(0.45)	-	NULL
ISX	91464	genome.wustl.edu	37	22	35478540	35478540	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008494.1	+1	validated	p.T87A	0.994	111	0%	122	27%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
MYH9	4627	genome.wustl.edu	37	22	36696278	36696278	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002473.4	-1	reviewed	p.S957	0.134	128	0%	185	24.3%	103	48.5%	-	-	-	NULL
TST	7263	genome.wustl.edu	37	22	37414320	37414320	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003312.4	-1	reviewed	p.V152I	0.000	142	0%	160	30%	57	49.1%	benign(0)	tolerated(0.18)	neutral(0.056)	superfamily_Rhodanese/Cell cycle control phosphatase
TRIOBP	11078	genome.wustl.edu	37	22	38130948	38130948	+	Silent	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039141.2	+1	reviewed	p.T1535	0.000	41	0%	52	36.5%	0	-	-	-	-	NULL
MICALL1	85377	genome.wustl.edu	37	22	38327935	38327935	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033386.2	+1	validated	p.R671C	1.000	94	0%	128	32%	64	46.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SUN2	25777	genome.wustl.edu	37	22	39134093	39134093	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000414211	-1	known	p.H211Y	0.044	54	0%	58	31%	1	0%	unknown(0)	-	-	NULL
NPTXR	23467	genome.wustl.edu	37	22	39222695	39222695	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014293.2	-1	reviewed	p.N303S	1.000	171	0%	307	35.5%	0	-	probably_damaging(0.999)	tolerated(0.11)	deleterious(0.762)	HMMPfam_Pentaxin,HMMSmart_SM00159,superfamily_Concanavalin A-like lectins/glucanases
APOBEC3C	27350	genome.wustl.edu	37	22	39413931	39413931	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014508.2	+1	reviewed	p.S112N	0.000	164	0%	230	30.4%	15	20%	unknown(0)	-	-	HMMPfam_APOBEC_N,superfamily_Cytidine deaminase-like
L3MBTL2	83746	genome.wustl.edu	37	22	41605742	41605742	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031488.4	+1	validated	p.D23N	0.998	180	0%	250	33.2%	19	52.6%	unknown(0)	deleterious(0.03)	-	NULL
TEF	7008	genome.wustl.edu	37	22	41790222	41790222	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003216.2	+1	reviewed	p.L200F	1.000	72	0%	74	24.3%	0	-	possibly_damaging(0.81)	tolerated(0.16)	neutral(0.364)	NULL
PACSIN2	11252	genome.wustl.edu	37	22	43284715	43284715	+	Silent	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007229.3	-1	reviewed	p.S181	0.847	700	0%	1113	33%	56	51.7%	-	-	-	NULL
PHF21B	112885	genome.wustl.edu	37	22	45312463	45312463	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138415.3	-1	validated	p.G87	1.000	42	0%	68	35.3%	0	-	-	-	-	NULL
WNT7B	7477	genome.wustl.edu	37	22	46318801	46318801	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_058238.2	-1	reviewed	p.H329N	1.000	58	0%	54	27.8%	32	46.8%	benign(0.424)	deleterious(0)	deleterious(0.582)	HMMPfam_wnt,HMMSmart_SM00097
CELSR1	9620	genome.wustl.edu	37	22	46768799	46768799	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014246.1	-1	reviewed	p.G2580	0.951	112	0%	112	34.8%	38	60.5%	-	-	-	HMMPfam_7tm_2
PLXNB2	23654	genome.wustl.edu	37	22	50719865	50719865	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012401.2	-1	validated	p.V1196M	0.206	20	0%	35	40%	625	43.3%	benign(0.002)	deleterious(0.04)	neutral(0.349)	NULL
PLXNB2	23654	genome.wustl.edu	37	22	50728645	50728645	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012401.2	-1	validated	p.R123	0.000	35	0%	35	40%	170	51.1%	-	-	-	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
CHKB	1120	genome.wustl.edu	37	22	51019897	51019897	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005198.4	-1	reviewed	p.E178G	1.000	108	0%	136	36%	73	31.5%	possibly_damaging(0.901)	tolerated(0.08)	deleterious(0.657)	HMMPfam_Choline_kinase,superfamily_Protein kinase-like (PK-like)
CRLF2	64109	genome.wustl.edu	37	X	1325329	1325329	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000381567	-1	known	p.Y116H	0.002	351	0%	416	30.8%	0	-	probably_damaging(0.999)	tolerated(0.53)	deleterious(0.498)	superfamily_Fibronectin type III
PNPLA4	8228	genome.wustl.edu	37	X	7889752	7889752	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142389.1	-1	reviewed	e3+2	1.000	503	0%	552	17.6%	0	-	-	-	-	-
KAL1	3730	genome.wustl.edu	37	X	8538694	8538694	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000216.2	-1	reviewed	p.V303A	0.001	202	0%	169	34.9%	1	0%	benign(0)	tolerated(0.42)	neutral(0.014)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
FAM9A	171482	genome.wustl.edu	37	X	8763186	8763186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174951.3	-1	validated	p.G255E	0.000	211	0%	208	34.6%	0	-	unknown(0)	-	-	NULL
GPR143	4935	genome.wustl.edu	37	X	9709438	9709438	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000447366	-1	known	p.Y211H	0.995	263	0%	282	39%	21	9.5%	-	-	-	HMMPfam_Ocular_alb
SHROOM2	357	genome.wustl.edu	37	X	9863781	9863781	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001649.2	+1	reviewed	p.P611	0.000	15	0%	18	50%	2	50%	-	-	-	NULL
ARHGAP6	395	genome.wustl.edu	37	X	11162284	11162284	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013427.2	-1	reviewed	p.G664	0.993	87	0%	61	16.4%	0	-	-	-	-	NULL
RAB9A	9367	genome.wustl.edu	37	X	13727258	13727258	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004251.3	+1	provisional	p.R131	0.997	165	0%	153	29.4%	187	44.9%	-	-	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
ASB11	140456	genome.wustl.edu	37	X	15333674	15333674	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080873.1	-1	reviewed	p.F18	1.000	223	0%	189	32.3%	0	-	-	-	-	NULL
FIGF	2277	genome.wustl.edu	37	X	15402026	15402026	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004469.2	-1	reviewed	p.Y15H	0.011	313	0%	345	29.3%	0	-	benign(0.001)	tolerated(0.48)	neutral(0.011)	NULL
KLHL34	257240	genome.wustl.edu	37	X	21675715	21675715	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153270.1	-1	provisional	p.E64D	0.946	14	0%	19	36.8%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
SMS	6611	genome.wustl.edu	37	X	21995182	21995182	+	Silent	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000457085	+1	known	p.T203A	0.859	135	0%	114	29.8%	124	0%	-	-	-	HMMPfam_Spermine_synth
DDX53	168400	genome.wustl.edu	37	X	23018494	23018494	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182699.2	+1	validated	p.A107V	0.000	174	0%	147	35.4%	0	-	benign(0.001)	tolerated(0.27)	neutral(0.034)	HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF54791
DCAF8L1	139425	genome.wustl.edu	37	X	27998726	27998726	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017930.1	-1	reviewed	p.V242	0.998	99	0%	108	25%	0	-	-	-	-	HMMSmart_WD40,superfamily_WD40_like
FAM47A	158724	genome.wustl.edu	37	X	34149537	34149537	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203408.3	-1	validated	p.T287A	0.016	71	0%	87	29.9%	0	-	benign(0.105)	tolerated(0.22)	neutral(0.050)	NULL
CYBB	1536	genome.wustl.edu	37	X	37658213	37658213	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000397.3	+1	reviewed	p.I227T	1.000	218	0%	158	34.8%	2	0%	benign(0.057)	deleterious(0.01)	neutral(0.409)	NULL
ZNF157	7712	genome.wustl.edu	37	X	47272695	47272695	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003446.3	+1	reviewed	p.H408R	1.000	218	0%	241	33.6%	0	-	benign(0.32)	deleterious(0)	deleterious(0.544)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
WDR13	64743	genome.wustl.edu	37	X	48463354	48463354	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017883.4	+1	reviewed	p.D464	0.995	65	0%	58	43.1%	158	91.7%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
HDAC6	10013	genome.wustl.edu	37	X	48676754	48676754	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006044.2	+1	reviewed	p.P708S	0.998	70	0%	90	33.3%	22	90.9%	benign(0)	tolerated(0.25)	neutral(0.037)	HMMPfam_Hist_deacetyl,superfamily_SSF52768
CCNB3	85417	genome.wustl.edu	37	X	50051790	50051790	+	Silent	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033031.2	+1	reviewed	p.V207	0.000	109	0%	76	32.9%	0	-	-	-	-	NULL
LOC100288024	100288024	genome.wustl.edu	37	X	53221942	53221942	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344194.1	+1	model	p.T35A	0.962	29	0%	30	36.7%	54	37%	unknown(0)	-	-	NULL
WNK3	65267	genome.wustl.edu	37	X	54319611	54319611	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020922.4	-1	reviewed	p.Y615H	0.988	371	0%	379	34.3%	0	-	benign(0.001)	tolerated(0.86)	neutral(0.001)	superfamily_Kinase_like
FGD1	2245	genome.wustl.edu	37	X	54475361	54475361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004463.2	-1	reviewed	p.V772I	0.890	89	0%	86	23.3%	20	0%	benign(0.019)	tolerated(0.22)	neutral(0.043)	HMMPfam_FYVE,HMMSmart_FYVE,superfamily_FYVE_PHD_ZnF
RRAGB	10325	genome.wustl.edu	37	X	55748676	55748676	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016656.3	+1	validated	p.A62T	1.000	455	0%	601	29.6%	4	0%	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	superfamily_P-loop containing nucleoside triphosphate hydrolases
UBQLN2	29978	genome.wustl.edu	37	X	56591402	56591402	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013444.3	+1	reviewed	p.T366A	1.000	74	0%	102	38.2%	45	0%	possibly_damaging(0.76)	tolerated(0.09)	deleterious(0.578)	NULL
ASB12	142689	genome.wustl.edu	37	X	63444860	63444860	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130388.2	-1	reviewed	p.R215H	0.999	127	0%	104	23.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Ank,superfamily_ANK
ASB12	142689	genome.wustl.edu	37	X	63445357	63445357	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130388.2	-1	reviewed	p.E49	0.974	154	0%	236	28.8%	0	-	-	-	-	superfamily_ANK
MSN	4478	genome.wustl.edu	37	X	64951040	64951040	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002444.2	+1	reviewed	p.R180H	0.998	270	0%	295	31.2%	122	76.2%	benign(0.019)	deleterious(0.05)	neutral(0.346)	PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41
IGBP1	3476	genome.wustl.edu	37	X	69366575	69366575	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001551.2	+1	reviewed	p.Y192C	1.000	451	0%	565	32.9%	75	0%	possibly_damaging(0.672)	tolerated(0.11)	deleterious(0.510)	HMMPfam_TAP42
DLG3	1741	genome.wustl.edu	37	X	69712093	69712093	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021120.3	+1	reviewed	p.G553R	1.000	156	0%	182	37.9%	11	100%	possibly_damaging(0.598)	deleterious(0)	deleterious(0.651)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
MED12	9968	genome.wustl.edu	37	X	70354597	70354597	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005120.2	+1	reviewed	p.V1588M	1.000	326	0%	434	30.2%	17	88.2%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
NLGN3	54413	genome.wustl.edu	37	X	70373349	70373349	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018977.3	+1	reviewed	p.G160	1.000	264	0%	386	27.7%	1	100%	-	-	-	HMMPfam_COesterase,superfamily_SSF53474
PHKA1	5255	genome.wustl.edu	37	X	71839137	71839137	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002637.3	-1	reviewed	p.P719H	1.000	262	0%	249	10.8%	5	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_PHK_AB
RLIM	51132	genome.wustl.edu	37	X	73811737	73811737	+	Silent	SNP	T	T	C	rs113198776		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016120.3	-1	reviewed	p.S471	0.000	146	0%	164	36.6%	8	100%	-	-	-	NULL
UPRT	139596	genome.wustl.edu	37	X	74520817	74520817	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000373379	+1	known	p.R280	0.000	286	0%	305	29.5%	0	-	-	-	-	NULL
RPS6KA6	27330	genome.wustl.edu	37	X	83361410	83361410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014496.4	-1	reviewed	p.C443Y	1.000	386	0%	369	30.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
BTK	695	genome.wustl.edu	37	X	100614309	100614309	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000061.2	-1	reviewed	p.S289N	1.000	215	0%	298	11.1%	1	0%	unknown(0)	tolerated(0.06)	-	HMMPfam_SH2,HMMSmart_SH2,superfamily_SSF55550
NXF5	55998	genome.wustl.edu	37	X	101096868	101096868	+	Silent	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032946.2	-1	reviewed	p.P43	0.498	515	0.2%	493	28.6%	0	-	-	-	-	HMMPfam_Tap-RNA_bind,superfamily_RNA-binding domain RBD
ALG13	79868	genome.wustl.edu	37	X	110980081	110980081	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000394780	+1	known	p.V890E	0.589	383	0%	350	32%	13	30.7%	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	NULL
ZCCHC16	340595	genome.wustl.edu	37	X	111698755	111698755	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004308.2	+1	validated	p.T267A	0.710	70	0%	73	21.9%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
LRCH2	57631	genome.wustl.edu	37	X	114347854	114347854	+	Silent	SNP	A	A	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020871.3	-1	validated	p.L741	1.000	252	0%	175	30.9%	0	-	-	-	-	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology
LOC642357	642357	genome.wustl.edu	37	X	114937783	114937783	+	RNA	SNP	C	C	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_016681.3	+1	model	NULL	1.000	164	0%	184	33.2%	0	-	-	-	-	-
WDR44	54521	genome.wustl.edu	37	X	117543590	117543590	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019045.4	+1	reviewed	p.G558*	1.000	215	0%	172	31.4%	4	0%	-	-	-	superfamily_WD40 repeat-like
KIAA1210	57481	genome.wustl.edu	37	X	118221157	118221157	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020721.1	-1	validated	p.M1346V	0.000	177	0%	220	32.3%	0	-	benign(0.006)	tolerated(0.47)	neutral(0.011)	NULL
ZBTB33	10009	genome.wustl.edu	37	X	119388273	119388273	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006777.3	+1	reviewed	p.I335V	0.610	256	0%	243	35.4%	7	85.7%	benign(0)	tolerated(1)	-	NULL
ATP1B4	23439	genome.wustl.edu	37	X	119509382	119509382	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142447.2	+1	reviewed	p.Y240N	1.000	273	0%	245	22.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Na_K-ATPase
GRIA3	2892	genome.wustl.edu	37	X	122459979	122459979	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000264357	+1	known	p.R204H	1.000	227	0%	332	27.4%	0	-	probably_damaging(0.987)	tolerated(0.4)	neutral(0.453)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
THOC2	57187	genome.wustl.edu	37	X	122760483	122760483	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081550.1	-1	validated	p.R930C	1.000	477	0%	374	31%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
BCORL1	63035	genome.wustl.edu	37	X	129189948	129189948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021946.3	+1	reviewed	p.R1658K	0.907	101	0%	143	35%	5	100%	benign(0.017)	tolerated(0.76)	neutral(0.002)	NULL
ELF4	2000	genome.wustl.edu	37	X	129208685	129208685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127197.1	-1	reviewed	p.V40I	1.000	177	0%	223	31.4%	13	0%	possibly_damaging(0.937)	tolerated(0.1)	deleterious(0.669)	NULL
RBMX2	51634	genome.wustl.edu	37	X	129546815	129546815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016024.2	+1	validated	p.R321H	0.000	48	0%	27	25.9%	20	85%	unknown(0)	tolerated(0.46)	-	NULL
HS6ST2	90161	genome.wustl.edu	37	X	131763055	131763055	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077188.1	-1	reviewed	p.V378	0.999	135	0%	149	36.9%	0	-	-	-	-	HMMPfam_HS6ST
PHF6	84295	genome.wustl.edu	37	X	133527637	133527637	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001015877.1	+1	reviewed	p.R116Q	1.000	410	0%	343	13.1%	12	33.3%	benign(0.025)	tolerated(0.49)	neutral(0.011)	HMMSmart_SM00249
DDX26B	203522	genome.wustl.edu	37	X	134690175	134690175	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182540.4	+1	validated	p.V381A	1.000	530	0%	528	31.8%	1	0%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	NULL
GPR112	139378	genome.wustl.edu	37	X	135426792	135426792	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153834.3	+1	reviewed	p.E309	0.006	312	0%	257	26.5%	0	-	-	-	-	NULL
F9	2158	genome.wustl.edu	37	X	138619222	138619222	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000133.3	+1	reviewed	p.N48D	0.994	242	0%	209	33.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00069,superfamily_GLA-domain
UBE2NL	389898	genome.wustl.edu	37	X	142967648	142967648	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012989.1	+1	reviewed	p.A149V	1.000	318	0%	344	28.8%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMSmart_UBCc,superfamily_UBQ-conjugat/RWD-like
MAGEA1	4100	genome.wustl.edu	37	X	152482516	152482516	+	Silent	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004988.4	-1	reviewed	p.T165	0.000	276	0.4%	312	31.7%	0	-	-	-	-	HMMPfam_MAGE
ATP2B3	492	genome.wustl.edu	37	X	152813327	152813327	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001344.2	+1	reviewed	p.M331I	1.000	213	0%	370	31.1%	0	-	benign(0.018)	tolerated(0.49)	neutral(0.011)	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transmembrane domain M
PLXNB3	5365	genome.wustl.edu	37	X	153043438	153043438	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005393.2	+1	reviewed	p.N1766S	1.000	85	0%	111	34.2%	0	-	benign(0.082)	deleterious(0)	neutral(0.451)	superfamily_Rho_GAP,HMMPfam_Plexin_cytopl
L1CAM	3897	genome.wustl.edu	37	X	153141287	153141287	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000425.3	-1	reviewed	p.V2A	0.979	37	0%	61	27.9%	0	-	benign(0)	tolerated(0.42)	neutral(0.014)	NULL
HCFC1	3054	genome.wustl.edu	37	X	153222767	153222767	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A15X-01A-11D-A122-09	TCGA-D1-A15X-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005334.2	-1	reviewed	p.T784M	0.999	139	0%	121	28.9%	17	70.5%	probably_damaging(0.977)	deleterious(0.01)	deleterious(0.825)	NULL
