Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
KIAA1751	85452	genome.wustl.edu	37	1	1896434	1896434	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080484.1	-1	predicted	p.R490C	0.006	25	0%	28	39.3%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
TP73	7161	genome.wustl.edu	37	1	3598964	3598964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005427.2	+1	reviewed	p.G12D	0.950	15	0%	11	45.5%	0	-	probably_damaging(0.976)	tolerated(0.86)	neutral(0.418)	NULL
SRRM1	10250	genome.wustl.edu	37	1	24996069	24996069	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005839.3	+1	validated	p.K732T	1.000	37	0%	65	43.1%	18	38.8%	unknown(0)	deleterious(0.01)	-	NULL
PIGV	55650	genome.wustl.edu	37	1	27120898	27120898	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017837.2	+1	validated	p.L125V	0.823	181	0%	201	46.3%	17	64.7%	benign(0.01)	tolerated(0.56)	neutral(0.007)	HMMPfam_Mannosyl_trans2
EPB41	2035	genome.wustl.edu	37	1	29365895	29365895	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203343.2	+1	reviewed	p.F496	0.980	68	0%	111	56.8%	4	25%	-	-	-	HMMPfam_FA,superfamily_SSF50729
LOC100288450	100288450	genome.wustl.edu	37	1	29814726	29814726	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342037.1	-1	model	p.Y106	0.997	8	0.000	12	0.417	0	-	-	-	-	NULL
COL16A1	1307	genome.wustl.edu	37	1	32127292	32127292	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001856.3	-1	reviewed	p.P1232H	0.547	53	0%	61	50.8%	18	38.8%	unknown(0)	tolerated(0.12)	-	HMMPfam_Collagen
COL16A1	1307	genome.wustl.edu	37	1	32165441	32165441	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001856.3	-1	reviewed	p.G80E	1.000	78	0%	74	44.6%	2	0%	unknown(0)	deleterious(0)	-	HMMSmart_SM00210
SPOCD1	90853	genome.wustl.edu	37	1	32280086	32280086	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144569.4	-1	provisional	p.E283D	0.000	10	0%	11	45.5%	0	-	benign(0.181)	-	-	NULL
ZSCAN20	7579	genome.wustl.edu	37	1	33960964	33960964	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145238.3	+1	validated	p.R1007I	1.000	43	0%	74	44.6%	0	-	possibly_damaging(0.936)	deleterious(0.02)	deleterious(0.764)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CSMD2	114784	genome.wustl.edu	37	1	33992823	33992823	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052896.3	-1	validated	p.R3259W	1.000	89	0%	118	48.3%	0	-	probably_damaging(0.972)	tolerated(0.09)	deleterious(0.710)	NULL
C1orf94	84970	genome.wustl.edu	37	1	34677973	34677973	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134734.1	+1	validated	p.D563N	1.000	78	0%	103	54.4%	0	-	possibly_damaging(0.801)	deleterious(0)	deleterious(0.746)	NULL
GRIK3	2899	genome.wustl.edu	37	1	37271817	37271817	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000831.3	-1	reviewed	p.Y734	1.000	61	0%	73	39.7%	2	0%	-	-	-	HMMPfam_Lig_chan,HMMSmart_PBPe,superfamily_SSF53850
RSPO1	284654	genome.wustl.edu	37	1	38079995	38079995	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001038633.2	-1	reviewed	p.I99	0.082	22	0%	29	41.4%	1	0%	-	-	-	HMMSmart_SM00261,superfamily_Growth factor receptor domain
MACF1	23499	genome.wustl.edu	37	1	39800837	39800837	+	Silent	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033044.2	+1	reviewed	p.S1299	0.029	113	0%	131	42.7%	0	-	-	-	-	superfamily_SSF75399
KIAA0754	643314	genome.wustl.edu	37	1	39878348	39878348	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015038.1	+1	predicted	p.S804*	0.001	65	0%	87	37.9%	0	-	-	-	-	NULL
ZMPSTE24	10269	genome.wustl.edu	37	1	40758120	40758120	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005857.3	+1	reviewed	p.L403I	1.000	87	0%	129	45.7%	0	-	benign(0.172)	tolerated(0.41)	neutral(0.030)	HMMPfam_Peptidase_M48
WDR65	149465	genome.wustl.edu	37	1	43647494	43647494	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152498.3	+1	validated	p.I149	0.000	59	0%	65	43.1%	0	-	-	-	-	HMMSmart_WD40,superfamily_WD40_like
DMAP1	55929	genome.wustl.edu	37	1	44684374	44684374	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001034023.1	+1	reviewed	p.E223K	1.000	55	0%	45	42.2%	87	49.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NASP	4678	genome.wustl.edu	37	1	46083244	46083244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172164.1	+1	reviewed	p.S758L	0.032	60	0%	78	34.6%	715	42.3%	benign(0.139)	deleterious(0.03)	neutral(0.377)	NULL
PIK3R3	8503	genome.wustl.edu	37	1	46527650	46527650	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114172.1	-1	validated	p.E239*	1.000	317	0%	485	43.9%	0	-	-	-	-	NULL
STIL	6491	genome.wustl.edu	37	1	47767283	47767283	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001048166.1	-1	reviewed	p.S135A	0.502	123	0%	160	45%	0	-	possibly_damaging(0.947)	tolerated(0.07)	deleterious(0.710)	NULL
SPATA6	54558	genome.wustl.edu	37	1	48865309	48865309	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019073.1	-1	provisional	p.F165C	0.166	289	0%	372	48.4%	0	-	benign(0.207)	tolerated(0.2)	neutral(0.069)	NULL
ZCCHC11	23318	genome.wustl.edu	37	1	52954676	52954676	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009881.1	-1	validated	p.D474N	1.000	67	0%	126	11.1%	2	0%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	superfamily_Nucleotidyltransferase
INADL	10207	genome.wustl.edu	37	1	62393411	62393411	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176877.2	+1	reviewed	p.T1194A	0.925	159	0%	165	42.4%	2	100%	benign(0.001)	tolerated(0.76)	neutral(0.001)	NULL
ATG4C	84938	genome.wustl.edu	37	1	63284957	63284957	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032852.2	+1	reviewed	p.K226E	1.000	194	0%	276	43.8%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Peptidase_C54
CACHD1	57685	genome.wustl.edu	37	1	65157244	65157244	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020925.2	+1	validated	p.*1224	0.995	71	0%	90	38.9%	33	48.4%	-	-	-	NULL
IL12RB2	3595	genome.wustl.edu	37	1	67838398	67838398	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001559.2	+1	reviewed	p.M550R	0.173	48	0%	72	38.9%	0	-	benign(0.001)	tolerated(0.77)	neutral(0.001)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
LRRC40	55631	genome.wustl.edu	37	1	70618193	70618193	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017768.4	-1	validated	p.V454	1.000	114	0%	138	44.9%	2	50%	-	-	-	superfamily_SSF52058
C1orf173	127254	genome.wustl.edu	37	1	75108756	75108756	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002912.4	-1	validated	p.K90N	1.000	181	0%	228	43.9%	0	-	probably_damaging(0.98)	deleterious(0.02)	deleterious(0.807)	NULL
SLC44A5	204962	genome.wustl.edu	37	1	75672389	75672389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152697.4	-1	validated	p.R688I	1.000	248	0%	347	42.9%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_DUF580
MSH4	4438	genome.wustl.edu	37	1	76345821	76345821	+	Silent	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002440.2	+1	validated	p.I588	1.000	161	0%	230	49.6%	0	-	-	-	-	HMMPfam_MutS_III,HMMSmart_MUTSd,superfamily_DNA_repair_MutS_domIII
AK5	26289	genome.wustl.edu	37	1	77759637	77759637	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174858.1	+1	reviewed	p.L136R	1.000	83	0%	107	50.5%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_P-loop containing nucleoside triphosphate hydrolases
FUBP1	8880	genome.wustl.edu	37	1	78428511	78428511	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003902.3	-1	reviewed	p.R430C	1.000	248	0%	339	44.2%	13	38.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
SPATA1	100505741	genome.wustl.edu	37	1	84998600	84998600	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081472.1	+1	validated	p.S223Y	0.100	143	0%	203	43.8%	0	-	-	-	-	NULL
CTBS	1486	genome.wustl.edu	37	1	85029018	85029018	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004388.2	-1	validated	p.T293	0.000	130	0%	182	43.4%	6	50%	-	-	-	HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases
SSX2IP	117178	genome.wustl.edu	37	1	85121643	85121643	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014021.3	-1	reviewed	p.R421*	0.994	206	0%	264	38.6%	2	0%	-	-	-	NULL
WDR63	126820	genome.wustl.edu	37	1	85595745	85595745	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145172.3	+1	validated	p.R828C	0.983	97	0%	103	44.7%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CLCA4	22802	genome.wustl.edu	37	1	87025615	87025615	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012128.3	+1	reviewed	p.D54N	0.908	67	0%	104	44.2%	0	-	benign(0.049)	tolerated(0.23)	neutral(0.045)	HMMPfam_CLCA_N
RBMXL1	494115	genome.wustl.edu	37	1	89449383	89449383	+	Missense_Mutation	SNP	G	G	A	rs71216132		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000321792	-1	known	p.R43C	1.000	291	0%	387	33.1%	8	12.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
ZNF644	84146	genome.wustl.edu	37	1	91406185	91406185	+	Silent	SNP	C	C	T	rs148356542	by1000genomes	TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201269.1	-1	validated	p.T242	1.000	286	0%	388	39.7%	2	50%	-	-	-	NULL
EPHX4	253152	genome.wustl.edu	37	1	92508478	92508478	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173567.4	+1	validated	p.R139Q	0.996	148	0%	193	43%	0	-	benign(0.014)	tolerated(0.51)	neutral(0.009)	HMMPfam_Abhydrolase_1,superfamily_SSF53474
GLMN	11146	genome.wustl.edu	37	1	92754608	92754608	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053274.2	-1	reviewed	p.Q165	0.997	165	0%	217	50.7%	2	0%	-	-	-	HMMPfam_FKBP12
COL11A1	1301	genome.wustl.edu	37	1	103345392	103345392	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080629.2	-1	reviewed	p.R1719	1.000	87	0%	109	43.1%	0	-	-	-	-	HMMPfam_COLFI,HMMSmart_COLFI
AKNAD1	254268	genome.wustl.edu	37	1	109380274	109380274	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152763.3	-1	validated	p.E478D	0.139	262	0%	369	36.6%	0	-	benign(0.017)	tolerated(0.21)	neutral(0.044)	NULL
ST7L	54879	genome.wustl.edu	37	1	113134159	113134159	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017744.4	-1	reviewed	p.E230A	1.000	167	0%	268	44%	2	50%	possibly_damaging(0.944)	tolerated(0.38)	neutral(0.406)	HMMPfam_ST7
SYCP1	6847	genome.wustl.edu	37	1	115420748	115420748	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003176.2	+1	validated	p.E279K	1.000	97	0%	145	46.9%	0	-	benign(0.4)	deleterious(0.02)	deleterious(0.512)	HMMPfam_SCP-1
SLC22A15	55356	genome.wustl.edu	37	1	116574156	116574156	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018420.2	+1	validated	p.R300C	0.994	88	0%	156	44.9%	0	-	benign(0.251)	tolerated(0.1)	neutral(0.312)	superfamily_MFS general substrate transporter
CD58	965	genome.wustl.edu	37	1	117057253	117057253	+	RNA	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_026665.1	-1	reviewed	NULL	0.000	31	0%	28	35.7%	1	0%	-	-	-	-
LOC100131261	100131261	genome.wustl.edu	37	1	118320927	118320927	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001720964.1	-1	model	p.F68V	1.000	61	0%	66	42.4%	0	-	-	-	-	NULL
SPAG17	200162	genome.wustl.edu	37	1	118539232	118539232	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206996.2	-1	validated	p.E1637	1.000	211	0%	280	42.5%	0	-	-	-	-	NULL
HSD3B2	3284	genome.wustl.edu	37	1	119962178	119962178	+	Missense_Mutation	SNP	G	G	A	rs6211	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000198.3	+1	reviewed	p.E94K	0.026	77	0%	118	43.2%	0	-	benign(0.004)	tolerated(0.28)	neutral(0.032)	HMMPfam_3Beta_HSD,superfamily_NAD(P)-binding Rossmann-fold domains
LOC100132733	100132733	genome.wustl.edu	37	1	143230385	143230385	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001715342.2	-1	model	p.S73*	0.455	1183	0%	1765	14%	0	-	-	-	-	NULL
CHD1L	9557	genome.wustl.edu	37	1	146740479	146740479	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004284.3	+1	validated	p.T343A	0.970	249	0%	313	47%	4	0%	benign(0.012)	deleterious(0.03)	neutral(0.365)	superfamily_P-loop containing nucleoside triphosphate hydrolases
PI4KB	5298	genome.wustl.edu	37	1	151276082	151276082	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002651.1	-1	provisional	p.F497L	1.000	99	0%	85	43.5%	45	44.4%	benign(0.003)	tolerated(0.37)	neutral(0.019)	superfamily_Protein kinase-like (PK-like)
FLG	2312	genome.wustl.edu	37	1	152275759	152275759	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002016.1	-1	reviewed	p.D3868G	0.046	171	0%	210	47.1%	0	-	unknown(0)	tolerated(0.53)	-	HMMPfam_Filaggrin
FLG	2312	genome.wustl.edu	37	1	152276336	152276336	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002016.1	-1	reviewed	p.T3676A	0.000	135	0%	171	36.3%	0	-	possibly_damaging(0.725)	tolerated(0.4)	neutral(0.280)	NULL
PGLYRP3	114771	genome.wustl.edu	37	1	153276355	153276355	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052891.1	-1	provisional	p.Q169H	0.001	96	0%	116	39.7%	0	-	benign(0.005)	tolerated(0.23)	neutral(0.042)	HMMPfam_Amidase_2,HMMSmart_Ami_2
GON4L	54856	genome.wustl.edu	37	1	155735914	155735914	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037533.1	-1	validated	p.R1117Q	0.013	123	0%	176	48.3%	7	57.1%	possibly_damaging(0.9)	tolerated(0.14)	deleterious(0.606)	NULL
SYT11	23208	genome.wustl.edu	37	1	155838481	155838481	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152280.4	+1	reviewed	p.R254W	1.000	45	0%	61	45.9%	16	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
MEF2D	4209	genome.wustl.edu	37	1	156449095	156449095	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005920.2	-1	provisional	p.C217	0.999	45	0%	36	33.3%	19	10.5%	-	-	-	NULL
FCRL4	83417	genome.wustl.edu	37	1	157548416	157548416	+	Silent	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000438714	-1	known	p.R502	0.000	82	1.2%	114	43.9%	0	-	-	-	-	NULL
CD1A	909	genome.wustl.edu	37	1	158224988	158224988	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001763.2	+1	reviewed	p.D58G	0.113	99	0%	138	47.1%	0	-	benign(0.029)	deleterious(0.02)	neutral(0.385)	HMMPfam_MHC_I,superfamily_MHC_I/II-like_Ag-recog
MNDA	4332	genome.wustl.edu	37	1	158813902	158813902	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002432.1	+1	reviewed	p.S187L	0.001	239	0%	320	86.6%	1	0%	possibly_damaging(0.8)	tolerated(0.22)	neutral(0.343)	NULL
CCDC19	25790	genome.wustl.edu	37	1	159846520	159846520	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012337.2	-1	validated	p.R393H	1.000	96	0%	141	44.7%	128	47.6%	probably_damaging(0.972)	tolerated(0.14)	deleterious(0.663)	NULL
NCSTN	23385	genome.wustl.edu	37	1	160321968	160321968	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015331.2	+1	reviewed	p.R323H	1.000	72	0%	89	12.4%	30	30%	benign(0.011)	tolerated(0.05)	neutral(0.346)	HMMPfam_Nicastrin,superfamily_Zn-dependent exopeptidases
SLAMF6	114836	genome.wustl.edu	37	1	160461123	160461123	+	Silent	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052931.4	-1	reviewed	p.T146	0.985	81	0%	124	44.4%	0	-	-	-	-	superfamily_Immunoglobulin
DDR2	4921	genome.wustl.edu	37	1	162745450	162745450	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014796.1	+1	reviewed	p.F622Y	1.000	79	0%	118	44.1%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
UCK2	7371	genome.wustl.edu	37	1	165860501	165860501	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012474.3	+1	reviewed	p.E100*	1.000	90	0%	132	43.2%	11	18.1%	-	-	-	HMMPfam_PRK,superfamily_P-loop containing nucleoside triphosphate hydrolases
TADA1	117143	genome.wustl.edu	37	1	166829432	166829432	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053053.3	-1	validated	p.L228S	0.821	109	0.9%	161	47.2%	7	57.1%	benign(0.001)	tolerated(0.15)	neutral(0.241)	NULL
ADCY10	55811	genome.wustl.edu	37	1	167792252	167792252	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018417.4	-1	reviewed	p.Y1388D	0.996	191	0%	276	47.1%	0	-	probably_damaging(0.999)	tolerated(0.59)	deleterious(0.495)	superfamily_TPR-like
ADCY10	55811	genome.wustl.edu	37	1	167815028	167815028	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018417.4	-1	reviewed	p.R927Q	0.362	104	0%	150	44.7%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
TBX19	9095	genome.wustl.edu	37	1	168250354	168250354	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005149.2	+1	reviewed	p.R9Q	0.000	44	0%	71	40.8%	0	-	benign(0.001)	tolerated(0.63)	neutral(0.004)	NULL
BLZF1	8548	genome.wustl.edu	37	1	169349822	169349822	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003666.2	+1	validated	p.R258C	0.999	111	0%	155	52.9%	6	33.3%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
LOC646804	646804	genome.wustl.edu	37	1	171053032	171053032	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_929761.3	+1	model	p.L134I	0.968	94	0%	113	52.2%	0	-	-	-	-	NULL
FMO2	2327	genome.wustl.edu	37	1	171173094	171173094	+	Missense_Mutation	SNP	C	C	T	rs145420492		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001460.2	+1	reviewed	p.R240C	0.007	85	0%	120	48.3%	0	-	possibly_damaging(0.643)	tolerated(0.21)	neutral(0.270)	HMMPfam_FMO-like,superfamily_SSF51905
METTL13	51603	genome.wustl.edu	37	1	171759640	171759640	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015935.4	+1	validated	p.A453V	0.002	44	0%	51	39.2%	30	36.6%	benign(0.001)	tolerated(0.46)	neutral(0.012)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
AXDND1	126859	genome.wustl.edu	37	1	179414325	179414325	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144696.4	+1	validated	p.I595R	1.000	114	0%	165	44.8%	0	-	unknown(0)	deleterious(0.01)	-	NULL
CACNA1E	777	genome.wustl.edu	37	1	181453140	181453140	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000721.2	+1	reviewed	p.D87G	1.000	23	0%	14	64.3%	0	-	probably_damaging(0.959)	deleterious(0.01)	deleterious(0.808)	superfamily_Voltage-gated potassium channels
LAMC1	3915	genome.wustl.edu	37	1	183084751	183084751	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002293.3	+1	reviewed	p.S436Y	1.000	104	0%	121	43%	64	28.1%	probably_damaging(0.976)	tolerated(0.07)	deleterious(0.737)	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,superfamily_Grow_fac_recept
FAM58BP	339521	genome.wustl.edu	37	1	200183217	200183217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105517.1	+1	provisional	p.A176T	1.000	29	0%	33	45.5%	0	-	-	-	-	superfamily_Cyclin_like
ADORA1	134	genome.wustl.edu	37	1	203134411	203134411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000674.2	+1	reviewed	p.R122W	0.869	67	0%	56	44.6%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PRELP	5549	genome.wustl.edu	37	1	203452873	203452873	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002725.3	+1	reviewed	p.P187	0.000	25	0%	32	37.5%	3	0%	-	-	-	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,superfamily_L domain-like
NFASC	23114	genome.wustl.edu	37	1	204923458	204923458	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015090.3	+1	reviewed	p.A114T	1.000	62	0%	34	44.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
FAM72A	729533	genome.wustl.edu	37	1	206141509	206141509	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001123168.1	+1	predicted	p.I72	0.949	464	0.2%	623	15.6%	3	0%	-	-	-	NULL
C1orf186	440712	genome.wustl.edu	37	1	206239531	206239531	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000331555	-1	known	p.E123*	0.001	151	0%	200	46.5%	2	0%	-	-	-	NULL
CR2	1380	genome.wustl.edu	37	1	207646922	207646922	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001006658.2	+1	reviewed	p.R671C	0.000	85	0%	124	49.2%	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
SYT14	255928	genome.wustl.edu	37	1	210334290	210334290	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153262.2	+1	validated	p.L524R	1.000	150	0%	218	39.4%	0	-	possibly_damaging(0.76)	tolerated(0.67)	neutral(0.284)	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
MIA3	375056	genome.wustl.edu	37	1	222833085	222833085	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198551.2	+1	validated	p.R1606C	1.000	211	0%	302	45.4%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
BROX	148362	genome.wustl.edu	37	1	222903454	222903454	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144695.2	+1	validated	p.F308L	1.000	115	0%	174	49.4%	1	0%	probably_damaging(0.99)	deleterious(0.03)	deleterious(0.806)	HMMPfam_BRO1
OBSCN	84033	genome.wustl.edu	37	1	228461005	228461005	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000359599	+1	known	p.A518T	0.023	33	0%	42	50%	9	66.6%	probably_damaging(0.985)	tolerated(0.57)	neutral(0.438)	HMMPfam_I-set,superfamily_Immunoglobulin
OBSCN	84033	genome.wustl.edu	37	1	228557766	228557766	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098623.1	+1	reviewed	p.F6697L	0.129	28	0%	28	39.3%	6	0%	benign(0.133)	deleterious(0)	neutral(0.456)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SIPA1L2	57568	genome.wustl.edu	37	1	232626734	232626734	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020808.3	-1	validated	p.L564	0.066	66	0%	89	41.6%	1	100%	-	-	-	superfamily_Rap/Ran-GAP (Pfam 02145)
ARID4B	51742	genome.wustl.edu	37	1	235345691	235345691	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016374.5	-1	reviewed	p.N848T	0.998	268	0.4%	420	45.5%	0	-	benign(0.002)	tolerated(0.22)	neutral(0.042)	NULL
ARID4B	51742	genome.wustl.edu	37	1	235345793	235345793	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016374.5	-1	reviewed	p.K814T	0.998	322	0.3%	453	43.9%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
LYST	1130	genome.wustl.edu	37	1	235875429	235875429	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000081.2	-1	reviewed	p.E3285*	1.000	81	0%	108	43.5%	0	-	-	-	-	HMMPfam_Beach,superfamily_BEACH domain
LYST	1130	genome.wustl.edu	37	1	235929422	235929422	+	Silent	SNP	G	G	A	rs80338660		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000081.2	-1	reviewed	p.Y2026	0.997	219	0%	318	44.7%	0	-	-	-	-	NULL
LYST	1130	genome.wustl.edu	37	1	235973226	235973226	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000081.2	-1	reviewed	p.D298N	1.000	34	0%	45	42.2%	0	-	probably_damaging(0.998)	tolerated(0.33)	deleterious(0.498)	NULL
RYR2	6262	genome.wustl.edu	37	1	237494265	237494265	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.V86M	0.715	107	0%	148	45.9%	0	-	benign(0.002)	-	-	HMMPfam_Ins145_P3_rec
RYR2	6262	genome.wustl.edu	37	1	237982494	237982494	+	Splice_Site	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	e101+2	1.000	251	0%	230	43.9%	0	-	-	-	-	-
C1orf101	257044	genome.wustl.edu	37	1	244780960	244780960	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130957.1	+1	validated	p.R874C	0.864	293	0%	464	43.1%	0	-	probably_damaging(0.997)	tolerated(0.08)	deleterious(0.766)	NULL
NLRP3	114548	genome.wustl.edu	37	1	247582327	247582327	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079821.2	+1	reviewed	p.A77	0.001	63	0%	84	46.4%	0	-	-	-	-	HMMPfam_PAAD_DAPIN,superfamily_DEATH_like
NLRP3	114548	genome.wustl.edu	37	1	247582372	247582372	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079821.2	+1	reviewed	p.P92	0.000	87	0%	98	52%	0	-	-	-	-	superfamily_DEATH_like
OR2W3	343171	genome.wustl.edu	37	1	248058939	248058939	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001957.2	+1	provisional	p.F17L	0.433	57	0%	63	44.4%	0	-	benign(0.334)	tolerated(0.25)	neutral(0.142)	superfamily_SSF81321
OR14C36	127066	genome.wustl.edu	37	1	248512557	248512557	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001918.1	+1	provisional	p.T161A	0.009	111	0%	117	47%	0	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_7tm_1,superfamily_SSF81321
OR14C36	127066	genome.wustl.edu	37	1	248512601	248512601	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001918.1	+1	provisional	p.F175L	0.941	153	0%	165	37.6%	0	-	probably_damaging(0.998)	deleterious(0.05)	deleterious(0.820)	HMMPfam_7tm_1,superfamily_SSF81321
OR2T4	127074	genome.wustl.edu	37	1	248525701	248525701	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004696.1	+1	provisional	p.C273	0.115	171	0%	225	45.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR2T1	26696	genome.wustl.edu	37	1	248569976	248569976	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030904.1	+1	provisional	p.F227L	0.888	259	0.4%	317	32.5%	0	-	probably_damaging(0.994)	tolerated(0.12)	deleterious(0.713)	HMMPfam_7tm_1,superfamily_SSF81321
MYT1L	23040	genome.wustl.edu	37	2	1926672	1926672	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015025.2	-1	validated	p.S290L	0.333	111	0%	131	45%	0	-	benign(0.006)	tolerated(0.05)	neutral(0.345)	NULL
KLF11	8462	genome.wustl.edu	37	2	10188451	10188451	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003597.4	+1	reviewed	p.F329	0.942	99	0%	104	43.3%	21	52.3%	-	-	-	NULL
SMC6	79677	genome.wustl.edu	37	2	17860143	17860143	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142286.1	-1	validated	p.E965*	1.000	161	0%	189	41.8%	4	50%	-	-	-	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
PUM2	23369	genome.wustl.edu	37	2	20508299	20508299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015317.1	-1	provisional	p.R189C	1.000	65	0%	85	41.2%	0	-	probably_damaging(0.973)	deleterious(0.01)	deleterious(0.821)	NULL
APOB	338	genome.wustl.edu	37	2	21233605	21233605	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000384.2	-1	reviewed	p.A2045	0.000	173	0%	196	40.8%	0	-	-	-	-	NULL
ITSN2	50618	genome.wustl.edu	37	2	24431142	24431142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006277.2	-1	reviewed	p.D1548N	1.000	75	0%	102	39.2%	0	-	possibly_damaging(0.73)	tolerated(0.21)	neutral(0.310)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_PH domain-like
DNAJC5G	285126	genome.wustl.edu	37	2	27503072	27503072	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173650.1	+1	provisional	p.D187Y	0.008	207	0%	259	40.2%	0	-	possibly_damaging(0.517)	deleterious(0)	deleterious(0.619)	NULL
NLRC4	58484	genome.wustl.edu	37	2	32476336	32476336	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000360906	-1	known	p.F199	0.585	51	0%	79	50.6%	0	-	-	-	-	HMMPfam_NACHT,superfamily_P-loop containing nucleoside triphosphate hydrolases
BIRC6	57448	genome.wustl.edu	37	2	32689802	32689802	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016252.3	+1	reviewed	p.E1723K	1.000	232	0%	316	47.8%	1	0%	probably_damaging(0.971)	tolerated(0.23)	neutral(0.454)	NULL
HEATR5B	54497	genome.wustl.edu	37	2	37289162	37289162	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019024.1	-1	validated	p.R539Q	1.000	169	0%	251	44.6%	1	100%	probably_damaging(0.998)	tolerated(0.1)	deleterious(0.761)	superfamily_ARM repeat
PRKD3	23683	genome.wustl.edu	37	2	37501725	37501725	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005813.3	-1	reviewed	p.V497A	1.000	127	0%	156	37.2%	6	33.3%	possibly_damaging(0.743)	deleterious(0)	deleterious(0.717)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ABCG5	64240	genome.wustl.edu	37	2	44051398	44051398	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022436.2	-1	reviewed	p.D360Y	1.000	182	0%	246	41.9%	0	-	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	NULL
ABCG8	64241	genome.wustl.edu	37	2	44066196	44066196	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022437.2	+1	reviewed	p.A2T	0.945	10	0%	11	63.6%	0	-	benign(0.273)	deleterious(0)	deleterious(0.474)	NULL
LHCGR	3973	genome.wustl.edu	37	2	48914915	48914915	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000233.3	-1	reviewed	p.S674F	0.005	90	0%	89	30.3%	0	-	possibly_damaging(0.502)	deleterious(0)	deleterious(0.612)	NULL
LHCGR	3973	genome.wustl.edu	37	2	48941139	48941139	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000233.3	-1	reviewed	p.T197	0.931	188	0%	258	43.8%	0	-	-	-	-	superfamily_L domain-like
LHCGR	3973	genome.wustl.edu	37	2	48950794	48950794	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000233.3	-1	reviewed	p.T142M	0.999	161	0%	214	45.8%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	superfamily_L domain-like
ASB3	51130	genome.wustl.edu	37	2	53992689	53992689	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016115.3	-1	reviewed	p.Y7	0.162	96	0%	122	37.7%	4	50%	-	-	-	NULL
SPTBN1	6711	genome.wustl.edu	37	2	54880862	54880862	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003128.2	+1	reviewed	p.D1898	0.931	27	0%	18	50%	40	62.5%	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
RTN4	57142	genome.wustl.edu	37	2	55253601	55253601	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020532.4	-1	reviewed	p.N545T	0.022	190	0.5%	286	44.8%	0	-	benign(0)	tolerated(0.97)	-	NULL
SMEK2	57223	genome.wustl.edu	37	2	55825648	55825648	+	Silent	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122964.1	-1	validated	p.I275	1.000	93	0%	119	44.5%	2	100%	-	-	-	HMMPfam_DUF625,superfamily_ARM repeat
PNPT1	87178	genome.wustl.edu	37	2	55883448	55883448	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033109.3	-1	validated	p.L448R	1.000	279	0%	374	44.7%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_RNase_PH,superfamily_Ribosomal_S5_D2-typ_fold
WDPCP	51057	genome.wustl.edu	37	2	63664586	63664586	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015910.4	-1	validated	p.R201I	1.000	146	0%	205	38%	0	-	probably_damaging(0.984)	deleterious(0.02)	deleterious(0.814)	NULL
BMP10	27302	genome.wustl.edu	37	2	69093496	69093496	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014482.1	-1	reviewed	p.R181I	0.771	155	0%	164	41.5%	0	-	benign(0.017)	tolerated(0.17)	neutral(0.059)	HMMPfam_TGFb_propeptide
GMCL1	64395	genome.wustl.edu	37	2	70064778	70064778	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178439.3	+1	provisional	p.S120	1.000	113	0%	159	48.4%	0	-	-	-	-	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
CLEC4F	165530	genome.wustl.edu	37	2	71039680	71039680	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173535.2	-1	validated	p.L480V	0.152	53	0%	53	37.7%	0	-	possibly_damaging(0.8)	deleterious(0.05)	deleterious(0.646)	superfamily_C-type_lectin_fold
DQX1	165545	genome.wustl.edu	37	2	74745582	74745582	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133637.2	-1	validated	p.V715	1.000	69	0%	78	51.3%	2	100%	-	-	-	NULL
HK2	3099	genome.wustl.edu	37	2	75113463	75113463	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000189.4	+1	reviewed	p.G660R	1.000	178	0%	251	51.8%	64	29.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hexokinase_1,superfamily_SSF53067
TACR1	6869	genome.wustl.edu	37	2	75425876	75425876	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001058.3	-1	reviewed	p.R62I	1.000	155	0%	227	41%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
LRRTM1	347730	genome.wustl.edu	37	2	80530141	80530141	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178839.4	-1	validated	p.I268	1.000	39	0%	25	48%	489	41.3%	-	-	-	HMMPfam_LRR_1,superfamily_SSF52058
DNAH6	1768	genome.wustl.edu	37	2	84931283	84931283	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001370.1	+1	validated	p.D2774	0.978	114	0%	125	49.6%	2	0%	-	-	-	NULL
TSGA10	80705	genome.wustl.edu	37	2	99636836	99636836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025244.2	-1	validated	p.R575Q	1.000	169	0%	227	43.6%	0	-	probably_damaging(0.997)	tolerated(0.12)	deleterious(0.727)	NULL
LONRF2	164832	genome.wustl.edu	37	2	100917170	100917170	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198461.3	-1	validated	p.A334V	0.008	135	0%	137	45.3%	0	-	possibly_damaging(0.561)	tolerated(0.31)	neutral(0.218)	superfamily_TPR-like
RGPD3	653489	genome.wustl.edu	37	2	107040243	107040243	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144013.1	-1	validated	p.R1394C	0.930	307	0%	392	48.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ran_BP1,HMMSmart_RanBD,superfamily_SSF50729
ST6GAL2	84620	genome.wustl.edu	37	2	107460402	107460402	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142351.1	-1	validated	p.R11Q	0.995	24	0%	42	42.9%	1	100%	benign(0.233)	tolerated(0.31)	neutral(0.051)	NULL
CCDC138	165055	genome.wustl.edu	37	2	109492577	109492577	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144978.1	+1	provisional	p.I622M	1.000	180	0%	236	41.1%	0	-	possibly_damaging(0.898)	deleterious(0)	deleterious(0.799)	NULL
ANAPC1	64682	genome.wustl.edu	37	2	112541503	112541503	+	Silent	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022662.2	-1	validated	p.I1678	0.995	237	0%	306	38.6%	4	25%	-	-	-	NULL
FOXD4L1	200350	genome.wustl.edu	37	2	114257907	114257907	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012184.4	+1	reviewed	p.P358	0.968	73	0%	58	60.3%	2	100%	-	-	-	NULL
C2orf76	130355	genome.wustl.edu	37	2	120069246	120069246	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017927.2	-1	predicted	p.E86K	1.000	117	0%	144	38.9%	3	33.3%	possibly_damaging(0.538)	deleterious(0.01)	deleterious(0.588)	HMMPfam_DUF2340
PTPN4	5775	genome.wustl.edu	37	2	120677770	120677770	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002830.2	+1	reviewed	p.K318N	1.000	122	0%	158	48.7%	0	-	probably_damaging(0.965)	deleterious(0.01)	deleterious(0.812)	superfamily_SSF50729
MKI67IP	84365	genome.wustl.edu	37	2	122486076	122486076	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032390.4	-1	reviewed	p.R201C	0.005	208	0%	327	37.3%	2	0%	benign(0.389)	tolerated(0.12)	neutral(0.385)	NULL
CNTNAP5	129684	genome.wustl.edu	37	2	125627267	125627267	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130773.2	+1	reviewed	p.R1121*	0.000	88	0%	122	36.9%	0	-	-	-	-	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
LRP1B	53353	genome.wustl.edu	37	2	141607881	141607881	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018557.2	-1	validated	p.L1577I	1.000	135	0%	168	51.2%	0	-	probably_damaging(0.998)	tolerated(0.34)	deleterious(0.497)	superfamily_SSF57196,superfamily_SSF63825
KIF5C	3800	genome.wustl.edu	37	2	149793838	149793838	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000435030	+1	known	p.R111Q	1.000	47	0%	87	51.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
NEB	4703	genome.wustl.edu	37	2	152581387	152581387	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004543.4	-1	reviewed	p.S164L	1.000	278	0%	337	42.7%	0	-	probably_damaging(0.998)	tolerated(0.2)	deleterious(0.523)	HMMPfam_Nebulin,HMMSmart_SM00227
CACNB4	785	genome.wustl.edu	37	2	152695812	152695812	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000726.3	-1	reviewed	p.Y462D	1.000	147	0%	233	45.5%	0	-	benign(0.148)	tolerated(0.09)	neutral(0.309)	NULL
ACVR1	90	genome.wustl.edu	37	2	158622579	158622579	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105.4	-1	reviewed	p.R307Q	1.000	98	0%	118	30.5%	36	41.6%	possibly_damaging(0.835)	tolerated(0.18)	neutral(0.374)	superfamily_Kinase_like,HMMPfam_Pkinase
SLC4A10	57282	genome.wustl.edu	37	2	162751199	162751199	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022058.3	+1	reviewed	p.D372G	1.000	145	0%	237	43.5%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein
KCNH7	90134	genome.wustl.edu	37	2	163374662	163374662	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033272.2	-1	reviewed	p.F157C	1.000	40	0%	71	59.2%	0	-	benign(0)	tolerated(0.17)	neutral(0.059)	NULL
SCN7A	6332	genome.wustl.edu	37	2	167322036	167322036	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002976.2	-1	validated	p.E293K	0.972	88	0%	90	50%	0	-	benign(0.002)	tolerated(0.46)	neutral(0.012)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
NOSTRIN	115677	genome.wustl.edu	37	2	169717333	169717333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039724.3	+1	validated	p.S403F	1.000	135	0%	164	44.5%	5	40%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
LRP2	4036	genome.wustl.edu	37	2	170060656	170060656	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004525.2	-1	reviewed	p.R2614I	0.518	108	0%	131	11.5%	0	-	benign(0.246)	deleterious(0.01)	neutral(0.431)	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
LRP2	4036	genome.wustl.edu	37	2	170072852	170072852	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004525.2	-1	reviewed	p.L1913I	0.977	109	0%	123	46.3%	0	-	benign(0.003)	tolerated(0.28)	neutral(0.032)	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
PPIG	9360	genome.wustl.edu	37	2	170493494	170493494	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004792.2	+1	validated	p.R576*	0.993	211	0%	280	48.2%	33	45.4%	-	-	-	NULL
UBR3	130507	genome.wustl.edu	37	2	170804218	170804218	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172070.3	+1	validated	p.S1026Y	1.000	66	0%	74	37.8%	2	0%	benign(0.037)	tolerated(0.69)	neutral(0.004)	NULL
HOXD3	3232	genome.wustl.edu	37	2	177034349	177034349	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006898.4	+1	reviewed	p.Q169H	1.000	35	0%	56	57.1%	0	-	possibly_damaging(0.892)	tolerated(0.07)	deleterious(0.670)	NULL
TTC30A	92104	genome.wustl.edu	37	2	178482947	178482947	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152275.3	-1	validated	p.G161	0.992	61	0%	84	47.6%	14	57.1%	-	-	-	HMMSmart_TPR,superfamily_SSF48452
OSBPL6	114880	genome.wustl.edu	37	2	179247784	179247784	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145739.1	+1	reviewed	p.R556Q	1.000	61	0%	52	51.9%	8	37.5%	possibly_damaging(0.867)	tolerated(0.59)	neutral(0.341)	HMMPfam_Oxysterol_BP
TTN	7273	genome.wustl.edu	37	2	179444390	179444390	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.D19942Y	1.000	191	0%	231	42.4%	0	-	probably_damaging(0.964)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179474417	179474417	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.P14677S	1.000	155	0%	178	52.8%	0	-	benign(0.014)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179483192	179483192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.E13097K	1.000	73	0%	123	51.2%	1	100%	benign(0.014)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179485078	179485078	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.P12822	0.761	110	1.8%	132	47.7%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179494084	179494084	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.E12222K	1.000	131	0%	205	44.4%	0	-	benign(0.014)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179596569	179596569	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.R4434Q	0.981	57	0%	69	42%	0	-	unknown(0)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179602950	179602950	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.D3500N	1.000	96	0%	97	37.1%	0	-	benign(0.014)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179610792	179610792	+	Silent	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133379.3	-1	reviewed	p.L5445	0.481	123	0%	137	48.9%	0	-	-	-	-	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
TTN	7273	genome.wustl.edu	37	2	179614232	179614232	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133379.3	-1	reviewed	p.N4299H	0.027	70	0%	90	50%	0	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
TTN	7273	genome.wustl.edu	37	2	179632748	179632748	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133379.3	-1	reviewed	p.T3100A	0.002	118	0%	154	39%	0	-	benign(0.099)	-	-	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
TTN	7273	genome.wustl.edu	37	2	179641681	179641681	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133379.3	-1	reviewed	p.G1637V	1.000	110	0%	171	46.8%	0	-	benign(0.29)	-	-	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
SLC40A1	30061	genome.wustl.edu	37	2	190426873	190426873	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014585.5	-1	reviewed	p.N483H	1.000	66	0%	102	49%	34	55.8%	probably_damaging(0.999)	tolerated(0.23)	deleterious(0.532)	superfamily_MFS general substrate transporter
SDPR	8436	genome.wustl.edu	37	2	192700704	192700704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004657.5	-1	reviewed	p.R408H	0.000	8	0.000	11	0.727	1	0%	possibly_damaging(0.754)	deleterious(0.03)	deleterious(0.643)	NULL
DNAH7	56171	genome.wustl.edu	37	2	196642563	196642563	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018897.2	-1	validated	p.F3675	0.994	154	0%	202	48.5%	6	33.3%	-	-	-	HMMPfam_Dynein_heavy
DNAH7	56171	genome.wustl.edu	37	2	196750896	196750896	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018897.2	-1	validated	p.R1836I	0.991	169	0%	226	45.6%	0	-	benign(0)	tolerated(0.53)	neutral(0.007)	NULL
DNAH7	56171	genome.wustl.edu	37	2	196825401	196825401	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018897.2	-1	validated	p.K825T	0.001	133	0%	222	49.5%	0	-	benign(0)	tolerated(0.4)	neutral(0.016)	HMMPfam_DHC_N2
PGAP1	80055	genome.wustl.edu	37	2	197784871	197784871	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024989.3	-1	validated	p.I51L	1.000	200	0%	253	44.7%	0	-	benign(0.019)	deleterious(0.04)	neutral(0.350)	NULL
PLCL1	5334	genome.wustl.edu	37	2	198949217	198949217	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006226.3	+1	validated	p.N228H	1.000	53	0%	96	43.8%	0	-	probably_damaging(0.999)	tolerated(0.14)	deleterious(0.740)	HMMPfam_efhand_like,superfamily_SSF47473
PLCL1	5334	genome.wustl.edu	37	2	198949322	198949322	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006226.3	+1	validated	p.E263K	1.000	57	0%	79	41.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_efhand_like,superfamily_SSF47473
SATB2	23314	genome.wustl.edu	37	2	200136951	200136951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015265.3	-1	reviewed	p.E729K	0.869	117	0%	136	54.4%	1	0%	benign(0.224)	tolerated(0.05)	neutral(0.367)	NULL
CASP10	843	genome.wustl.edu	37	2	202073993	202073993	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032977.3	+1	reviewed	p.R375W	0.011	96	0%	120	37.5%	4	75%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Peptidase_C14,HMMSmart_CASc,superfamily_SSF52129
ALS2CR12	130540	genome.wustl.edu	37	2	202195204	202195204	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139163.2	-1	validated	p.R222C	0.348	90	0%	129	41.9%	0	-	possibly_damaging(0.865)	deleterious(0.03)	deleterious(0.700)	NULL
ZDBF2	57683	genome.wustl.edu	37	2	207171710	207171710	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020923.1	+1	validated	p.K820E	0.010	101	0%	118	40.7%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
PIKFYVE	200576	genome.wustl.edu	37	2	209169569	209169569	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015040.3	+1	reviewed	e11-1	1.000	101	0%	156	37.2%	0	-	-	-	-	-
MAP2	4133	genome.wustl.edu	37	2	210559864	210559864	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002374.3	+1	reviewed	p.F990	0.000	66	0%	83	55.4%	0	-	-	-	-	HMMPfam_MAP2_projctn
ABCA12	26154	genome.wustl.edu	37	2	215865634	215865634	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173076.2	-1	reviewed	p.A992T	0.011	157	0%	212	53.3%	0	-	benign(0)	tolerated(0.62)	neutral(0.004)	NULL
FN1	2335	genome.wustl.edu	37	2	216285397	216285397	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_212482.1	-1	reviewed	p.V558	0.367	113	0%	149	51.7%	218	16.9%	-	-	-	HMMSmart_SM00058,superfamily_Fibronectin type I module
EPHA4	2043	genome.wustl.edu	37	2	222322589	222322589	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004438.3	-1	reviewed	p.E480	1.000	72	0%	98	44.9%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
WDFY1	57590	genome.wustl.edu	37	2	224744851	224744851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020830.3	-1	reviewed	p.R388H	0.998	69	0%	97	44.3%	12	33.3%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40
NYAP2	57624	genome.wustl.edu	37	2	226491740	226491740	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020864.1	+1	validated	p.K576E	1.000	37	0%	51	39.2%	0	-	unknown(0)	-	-	NULL
COL4A3	1285	genome.wustl.edu	37	2	228102730	228102730	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000091.3	+1	reviewed	p.K45R	0.993	146	0%	209	44%	0	-	probably_damaging(0.996)	deleterious(0.05)	deleterious(0.807)	HMMPfam_Collagen
COL4A3	1285	genome.wustl.edu	37	2	228173943	228173943	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000315699	+1	known	p.R1496*	1.000	55	0%	60	40%	0	-	-	-	-	NULL
AGFG1	3267	genome.wustl.edu	37	2	228389519	228389519	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135187.1	+1	reviewed	p.K194N	1.000	141	0%	193	44%	8	37.5%	possibly_damaging(0.701)	tolerated(0.52)	neutral(0.261)	NULL
B3GNT7	93010	genome.wustl.edu	37	2	232263222	232263222	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145236.2	+1	validated	p.F264	0.680	27	0%	31	48.4%	4	0%	-	-	-	HMMPfam_Galactosyl_T
SPP2	6694	genome.wustl.edu	37	2	234959457	234959457	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006944.2	+1	reviewed	p.T9	0.045	186	0.5%	256	44.5%	0	-	-	-	-	NULL
HDLBP	3069	genome.wustl.edu	37	2	242189359	242189359	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005336.3	-1	validated	p.R470H	1.000	85	0%	77	44.2%	151	41.7%	benign(0.149)	tolerated(0.57)	neutral(0.019)	HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF54791
CHL1	10752	genome.wustl.edu	37	3	419601	419601	+	Missense_Mutation	SNP	G	G	A	rs186218301	by1000genomes	TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006614.2	+1	reviewed	p.D618N	0.007	186	0%	246	48.8%	0	-	benign(0.062)	deleterious(0.03)	neutral(0.368)	HMMSmart_SM00409,superfamily_Immunoglobulin
CNTN6	27255	genome.wustl.edu	37	3	1337345	1337345	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014461.2	+1	reviewed	p.R172Q	0.461	88	0%	116	37.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_IG,superfamily_SSF48726
CNTN4	152330	genome.wustl.edu	37	3	2613202	2613202	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175607.1	+1	reviewed	p.W5*	1.000	169	0%	233	45.1%	0	-	-	-	-	NULL
ITPR1	3708	genome.wustl.edu	37	3	4714929	4714929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099952.2	+1	reviewed	p.E772K	0.999	27	0%	32	53.1%	0	-	benign(0.045)	tolerated(0.19)	neutral(0.052)	NULL
ITPR1	3708	genome.wustl.edu	37	3	4730238	4730238	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099952.2	+1	reviewed	p.F1245L	1.000	84	0%	111	55.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RYDR_ITPR
ITPR1	3708	genome.wustl.edu	37	3	4817094	4817094	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099952.2	+1	reviewed	p.E2002*	1.000	114	0%	157	50.3%	0	-	-	-	-	HMMPfam_RIH_assoc
CAND2	23066	genome.wustl.edu	37	3	12854769	12854769	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012298.2	+1	validated	p.H203	0.958	117	0%	135	20.7%	1	0%	-	-	-	superfamily_ARM-type_fold
ANKRD28	23243	genome.wustl.edu	37	3	15726828	15726828	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015199.2	-1	provisional	p.L735R	1.000	77	0%	70	32.9%	12	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
ANKRD28	23243	genome.wustl.edu	37	3	15726889	15726889	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015199.2	-1	provisional	p.R715W	0.943	65	0%	103	41.7%	14	28.5%	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	HMMPfam_Ank,superfamily_Ankyrin repeat
GALNTL2	117248	genome.wustl.edu	37	3	16268892	16268892	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_054110.4	+1	validated	p.K602T	1.000	141	0%	187	41.7%	0	-	probably_damaging(0.992)	tolerated(0.16)	deleterious(0.507)	HMMPfam_Ricin_B_lectin,HMMSmart_RICIN,superfamily_RicinB_like
KAT2B	8850	genome.wustl.edu	37	3	20141413	20141413	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003884.4	+1	reviewed	p.K212N	1.000	67	0%	83	33.7%	0	-	benign(0.304)	tolerated(0.06)	neutral(0.417)	HMMPfam_PCAF_N
KAT2B	8850	genome.wustl.edu	37	3	20167607	20167607	+	Splice_Site	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003884.4	+1	reviewed	e10+2	1.000	67	0%	60	38.3%	0	-	-	-	-	-
SGOL1	151648	genome.wustl.edu	37	3	20216136	20216136	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012410.2	-1	provisional	p.R296I	0.837	155	0%	239	44.4%	0	-	probably_damaging(0.96)	deleterious(0.02)	deleterious(0.786)	NULL
TRIM71	131405	genome.wustl.edu	37	3	32932742	32932742	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039111.1	+1	provisional	p.F682	0.954	16	0%	15	33.3%	0	-	-	-	-	superfamily_SSF101898
UBP1	7342	genome.wustl.edu	37	3	33434923	33434923	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128161.1	-1	validated	p.E472*	1.000	122	0%	156	38.5%	9	11.1%	-	-	-	NULL
EPM2AIP1	9852	genome.wustl.edu	37	3	37033920	37033920	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014805.3	-1	reviewed	p.H217N	0.825	26	0%	33	33.3%	11	18.1%	benign(0.081)	tolerated(0.27)	neutral(0.040)	NULL
GOLGA4	2803	genome.wustl.edu	37	3	37340494	37340494	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002078.4	+1	reviewed	p.E329*	1.000	79	0%	112	50%	0	-	-	-	-	NULL
GOLGA4	2803	genome.wustl.edu	37	3	37340794	37340794	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002078.4	+1	reviewed	p.E340K	1.000	68	0%	79	34.2%	1	0%	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	NULL
GOLGA4	2803	genome.wustl.edu	37	3	37369229	37369229	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002078.4	+1	reviewed	p.K1951T	1.000	124	0%	165	42.4%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SCN10A	6336	genome.wustl.edu	37	3	38797316	38797316	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006514.2	-1	validated	p.K475T	0.228	171	0%	230	48.7%	0	-	benign(0.054)	tolerated(0.24)	neutral(0.041)	NULL
ZNF620	253639	genome.wustl.edu	37	3	40558152	40558152	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175888.2	+1	validated	p.R356Q	0.032	88	0%	112	42%	6	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF445	353274	genome.wustl.edu	37	3	44489424	44489424	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181489.5	-1	validated	p.Y580C	0.000	77	0%	94	38.3%	1	0%	benign(0)	tolerated(0.18)	neutral(0.056)	NULL
LTF	4057	genome.wustl.edu	37	3	46491455	46491455	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002343.2	-1	reviewed	p.D316Y	0.999	120	0%	119	42%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Transferrin,HMMSmart_TR_FER,superfamily_SSF53850
SETD2	29072	genome.wustl.edu	37	3	47139459	47139459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014159.6	-1	reviewed	p.R1710C	0.999	94	0%	149	33.6%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MAP4	4134	genome.wustl.edu	37	3	47951018	47951018	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030884.3	-1	reviewed	p.Q238	0.000	83	0%	134	56.7%	0	-	-	-	-	NULL
IQCF2	389123	genome.wustl.edu	37	3	51895692	51895692	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203424.1	+1	validated	p.R4*	0.000	109	0%	138	43.5%	0	-	-	-	-	NULL
TLR9	54106	genome.wustl.edu	37	3	52258313	52258313	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017442.2	-1	reviewed	p.A7T	0.003	21	0%	16	56.2%	0	-	benign(0.001)	tolerated(0.44)	neutral(0.013)	NULL
ENSG00000222345	0	genome.wustl.edu	37	3	52725401	52725401	+	RNA	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000410413	+1	novel	NULL	0.996	59	0%	77	49.4%	0	-	-	-	-	-
CCDC66	285331	genome.wustl.edu	37	3	56597852	56597852	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001141947.1	+1	validated	p.K81N	0.987	147	0%	164	40.9%	0	-	possibly_damaging(0.929)	deleterious(0)	deleterious(0.821)	NULL
FAM208A	23272	genome.wustl.edu	37	3	56667304	56667304	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001112736.1	-1	validated	p.V1172A	0.529	153	0%	226	46.5%	6	50%	benign(0.004)	tolerated(0.27)	neutral(0.034)	NULL
ARHGEF3	50650	genome.wustl.edu	37	3	56992908	56992908	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000486829	-1	known	p.G30D	0.919	196	0%	253	53.8%	1	100%	unknown(0)	-	-	NULL
DNAH12	201625	genome.wustl.edu	37	3	57509594	57509594	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178504.4	-1	validated	p.R63I	0.008	191	0%	287	40.1%	0	-	benign(0.082)	deleterious(0.03)	neutral(0.370)	NULL
ABHD6	57406	genome.wustl.edu	37	3	58242342	58242342	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020676.5	+1	validated	p.V10A	1.000	184	0%	187	46%	7	57.1%	benign(0.021)	tolerated(0.27)	neutral(0.035)	NULL
CADPS	8618	genome.wustl.edu	37	3	62484866	62484866	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003716.3	-1	reviewed	p.L893I	1.000	187	0%	222	53.6%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_DUF1041
SYNPR	132204	genome.wustl.edu	37	3	63264220	63264220	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130003.1	+1	validated	p.V4A	1.000	70	0%	99	54.5%	0	-	benign(0.001)	tolerated(0.34)	neutral(0.023)	NULL
TMF1	7110	genome.wustl.edu	37	3	69077425	69077425	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007114.2	-1	validated	p.N872K	0.999	227	0%	347	38%	2	50%	benign(0.059)	tolerated(0.89)	neutral(0.004)	NULL
PPP4R2	151987	genome.wustl.edu	37	3	73114163	73114163	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174907.2	+1	provisional	p.E267K	0.996	62	0%	117	45.3%	5	80%	possibly_damaging(0.949)	tolerated(0.1)	deleterious(0.679)	HMMPfam_PPP4R2
C3orf38	285237	genome.wustl.edu	37	3	88202563	88202563	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000318887	+1	known	p.K106T	0.989	103	0%	182	45.6%	1	0%	possibly_damaging(0.918)	tolerated(0.28)	neutral(0.400)	NULL
CRYBG3	131544	genome.wustl.edu	37	3	97631113	97631113	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153605.2	+1	validated	p.R755*	1.000	235	0%	307	43.3%	1	0%	-	-	-	HMMPfam_Crystall,HMMSmart_SM00247,superfamily_gamma-Crystallin-like
MINA	84864	genome.wustl.edu	37	3	97664069	97664069	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042533.1	-1	validated	p.V453I	0.999	161	0%	260	41.9%	1	0%	benign(0.029)	tolerated(0.13)	neutral(0.254)	NULL
TOMM70A	9868	genome.wustl.edu	37	3	100105720	100105720	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014820.3	-1	validated	p.L143V	0.998	206	0%	275	45.1%	1	0%	benign(0.001)	tolerated(0.17)	neutral(0.059)	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452
PVRL3	25945	genome.wustl.edu	37	3	110852683	110852683	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015480.1	+1	provisional	p.G424V	1.000	146	0%	125	33.6%	2	100%	probably_damaging(1)	tolerated(0.96)	deleterious(0.500)	NULL
SLC9A10	285335	genome.wustl.edu	37	3	111923167	111923167	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183061.1	-1	validated	p.V690	0.001	155	0%	235	44.3%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
HGD	3081	genome.wustl.edu	37	3	120393784	120393784	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000187.3	-1	reviewed	p.S47L	0.999	137	0%	178	38.2%	4	25%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_HgmA,superfamily_RmlC-like cupins
DTX3L	151636	genome.wustl.edu	37	3	122289345	122289345	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138287.3	+1	validated	p.R660Q	0.745	130	0%	178	44.4%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PARP15	165631	genome.wustl.edu	37	3	122340315	122340315	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113523.1	+1	validated	p.I363T	0.951	104	0%	166	45.8%	0	-	benign(0.032)	tolerated(0.08)	neutral(0.301)	HMMPfam_Macro,HMMSmart_SM00506,superfamily_Macro domain-like
ALDH1L1	10840	genome.wustl.edu	37	3	125855661	125855661	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012190.2	-1	reviewed	p.F430	0.998	61	0%	67	37.3%	23	100%	-	-	-	HMMPfam_Aldedh,superfamily_Aldehyde_DH/Histidinol_DH
C3orf22	152065	genome.wustl.edu	37	3	126268815	126268815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152533.1	-1	predicted	p.R108C	0.000	104	0%	111	43.2%	0	-	probably_damaging(0.998)	tolerated(0.05)	deleterious(0.820)	NULL
COL6A5	256076	genome.wustl.edu	37	3	130107922	130107922	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153264.5	+1	validated	p.F787	1.000	163	0%	235	44.7%	0	-	-	-	-	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
COL6A6	131873	genome.wustl.edu	37	3	130368337	130368337	+	Silent	SNP	C	C	T	rs145622340	by1000genomes	TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102608.1	+1	provisional	p.F1888	0.988	20	0%	24	58.3%	0	-	-	-	-	HMMSmart_SM00327,superfamily_vWA-like
DNAJC13	23317	genome.wustl.edu	37	3	132176147	132176147	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015268.3	+1	validated	p.A462T	1.000	290	0%	411	47%	3	33.3%	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	superfamily_ARM repeat
ATP1B3	483	genome.wustl.edu	37	3	141644433	141644433	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001679.2	+1	reviewed	p.K244*	0.005	151	0%	190	35.3%	134	37.3%	-	-	-	HMMPfam_Na_K-ATPase
GK5	256356	genome.wustl.edu	37	3	141923565	141923565	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039547.2	-1	validated	p.K128T	1.000	268	0.4%	317	45.1%	0	-	possibly_damaging(0.833)	tolerated(0.17)	neutral(0.377)	HMMPfam_FGGY_N,superfamily_Actin-like ATPase domain
SLC9A9	285195	genome.wustl.edu	37	3	143551039	143551039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173653.3	-1	reviewed	p.R67Q	1.000	188	0%	288	44.1%	0	-	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMPfam_Na_H_Exchanger
FAM194A	131831	genome.wustl.edu	37	3	150404100	150404100	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152394.3	-1	validated	p.A199T	0.015	211	0%	313	44.1%	0	-	possibly_damaging(0.471)	deleterious(0)	deleterious(0.600)	NULL
P2RY14	9934	genome.wustl.edu	37	3	150931779	150931779	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081455.1	-1	reviewed	p.I109S	1.000	69	0%	91	47.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
AADAC	13	genome.wustl.edu	37	3	151538226	151538226	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001086.2	+1	reviewed	p.V139	0.261	147	0%	203	45.8%	0	-	-	-	-	HMMPfam_Abhydrolase_3,superfamily_alpha/beta-Hydrolases
MME	4311	genome.wustl.edu	37	3	154802112	154802112	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000902.3	+1	reviewed	p.Y52	0.761	51	0%	64	45.3%	0	-	-	-	-	NULL
MME	4311	genome.wustl.edu	37	3	154886415	154886415	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000902.3	+1	reviewed	e18+1	1.000	198	0%	253	45.1%	0	-	-	-	-	-
IL12A	3592	genome.wustl.edu	37	3	159713299	159713299	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000882.2	+1	reviewed	p.R239W	0.533	166	0%	223	40.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_IL12,superfamily_4_helix_cytokine
SI	6476	genome.wustl.edu	37	3	164773029	164773029	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001041.3	-1	reviewed	p.E489*	1.000	163	0%	226	53.1%	0	-	-	-	-	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases
SI	6476	genome.wustl.edu	37	3	164776971	164776971	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001041.3	-1	reviewed	p.K421N	1.000	184	0%	248	47.2%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases
SLITRK3	22865	genome.wustl.edu	37	3	164906545	164906545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014926.2	-1	validated	p.R692W	0.998	28	0%	38	55.3%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
SLITRK3	22865	genome.wustl.edu	37	3	164907220	164907220	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014926.2	-1	validated	p.D467N	0.996	85	0%	108	38%	0	-	benign(0.008)	tolerated(0.38)	neutral(0.018)	HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058
HRG	3273	genome.wustl.edu	37	3	186387811	186387811	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000412.2	+1	reviewed	p.S129R	0.992	118	0%	171	41.5%	0	-	probably_damaging(0.994)	tolerated(1)	neutral(0.452)	superfamily_Cystatin/monellin
XXYLT1	152002	genome.wustl.edu	37	3	194790519	194790519	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152531.4	-1	validated	p.F369	0.887	31	0%	40	45%	49	32.6%	-	-	-	superfamily_Nucleotide-diphospho-sugar transferases
LRCH3	84859	genome.wustl.edu	37	3	197547275	197547275	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032773.2	+1	provisional	p.R205I	1.000	168	0%	194	51%	3	66.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_SSF52058
ZNF732	654254	genome.wustl.edu	37	4	266039	266039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001137608.1	-1	provisional	p.D203N	0.298	144	0%	180	41.1%	0	-	benign(0.014)	deleterious(0.02)	neutral(0.384)	HMMSmart_ZnF_C2H2,superfamily_SSF48695
ZNF732	654254	genome.wustl.edu	37	4	289892	289892	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001137608.1	-1	provisional	p.K19T	0.017	155	0%	273	37.7%	2	0%	possibly_damaging(0.448)	tolerated(0.07)	neutral(0.466)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ATP5I	521	genome.wustl.edu	37	4	667163	667163	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007100.2	-1	reviewed	p.E40G	0.998	405	0%	521	14.8%	736	16.3%	possibly_damaging(0.767)	deleterious(0.01)	deleterious(0.690)	HMMPfam_ATP-synt_E
LETM1	3954	genome.wustl.edu	37	4	1838249	1838249	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012318.2	-1	reviewed	p.F215	0.980	82	0%	87	58.6%	12	50%	-	-	-	HMMPfam_LETM1
HAUS3	79441	genome.wustl.edu	37	4	2240738	2240738	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024511.5	-1	provisional	p.I314M	1.000	141	0%	174	43.1%	1	0%	benign(0.011)	tolerated(0.25)	neutral(0.037)	NULL
NOP14	8602	genome.wustl.edu	37	4	2940596	2940596	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003703.1	-1	validated	p.E846K	1.000	210	0%	274	46.4%	3	66.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Nop14
KIAA0232	9778	genome.wustl.edu	37	4	6865325	6865325	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100590.1	+1	validated	p.P1072	0.806	91	0%	113	42.5%	3	33.3%	-	-	-	NULL
METTL19	152992	genome.wustl.edu	37	4	8467223	8467223	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152544.1	+1	provisional	p.E85*	0.998	233	0%	292	44.9%	0	-	-	-	-	HMMPfam_AdoMet_MTase
ENSG00000219492	0	genome.wustl.edu	37	4	9386201	9386201	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000508324	-1	known	p.Q148P	0.030	194	0%	248	41.1%	0	-	possibly_damaging(0.435)	deleterious(0.04)	deleterious(0.491)	superfamily_C2H2 and C2HC zinc fingers
GPR125	166647	genome.wustl.edu	37	4	22456543	22456543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145290.2	-1	validated	p.R140Q	1.000	200	0.5%	285	47.4%	1	100%	benign(0.354)	tolerated(0.48)	neutral(0.122)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
PI4K2B	55300	genome.wustl.edu	37	4	25270155	25270155	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018323.3	+1	validated	p.N390S	1.000	140	0%	193	47.2%	0	-	probably_damaging(0.999)	tolerated(0.17)	deleterious(0.549)	HMMPfam_PI3_PI4_kinase
TBC1D19	55296	genome.wustl.edu	37	4	26750037	26750037	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018317.2	+1	validated	p.R442C	1.000	141	0.7%	192	42.2%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
ARAP2	116984	genome.wustl.edu	37	4	36134993	36134993	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015230.2	-1	reviewed	p.G1094	1.000	161	0%	154	39%	0	-	-	-	-	HMMSmart_SM00233,superfamily_PH domain-like
TLR6	10333	genome.wustl.edu	37	4	38830079	38830079	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006068.3	-1	validated	p.S339*	0.066	93	0%	97	43.3%	0	-	-	-	-	superfamily_SSF52058
RFC1	5981	genome.wustl.edu	37	4	39322117	39322117	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002913.3	-1	reviewed	p.E327	0.047	261	0%	362	50.6%	0	-	-	-	-	NULL
PDS5A	23244	genome.wustl.edu	37	4	39924328	39924328	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100399.1	-1	reviewed	p.L190V	1.000	116	0%	148	49.3%	2	50%	benign(0.017)	tolerated(1)	neutral(0.001)	superfamily_ARM repeat
LIMCH1	22998	genome.wustl.edu	37	4	41608017	41608017	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014988.2	+1	validated	p.R161Q	1.000	166	0%	235	47.2%	4	50%	probably_damaging(0.989)	tolerated(0.07)	deleterious(0.758)	superfamily_Calponin-homology domain CH-domain
DCAF4L1	285429	genome.wustl.edu	37	4	41984123	41984123	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029955.3	+1	validated	p.R105Q	0.956	44	0%	60	53.3%	0	-	benign(0.014)	tolerated(0.78)	neutral(0.002)	superfamily_WD40 repeat-like
SLC30A9	10463	genome.wustl.edu	37	4	42080230	42080230	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006345.3	+1	validated	p.E517A	1.000	94	0%	124	45.2%	3	0%	probably_damaging(0.984)	tolerated(0.17)	deleterious(0.489)	HMMPfam_Cation_efflux
GABRA4	2557	genome.wustl.edu	37	4	46930528	46930528	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000809.2	-1	reviewed	p.R460Q	0.001	93	0%	147	45.6%	0	-	benign(0)	tolerated(0.32)	neutral(0.024)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
SLAIN2	57606	genome.wustl.edu	37	4	48422227	48422227	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000510595	+1	known	p.L91F	0.991	156	0%	194	45.9%	31	51.6%	-	-	-	NULL
EXOC1	55763	genome.wustl.edu	37	4	56759755	56759755	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024924.1	+1	reviewed	p.R588C	1.000	128	0%	175	47.4%	9	33.3%	possibly_damaging(0.847)	tolerated(0.06)	deleterious(0.647)	HMMPfam_Sec3
AASDH	132949	genome.wustl.edu	37	4	57204813	57204813	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181806.2	-1	validated	p.S1018P	0.127	80	0%	113	49.6%	11	9%	probably_damaging(0.972)	tolerated(0.25)	neutral(0.451)	superfamily_Quinoprotein alcohol dehydrogenase-like
STAP1	26228	genome.wustl.edu	37	4	68472075	68472075	+	Nonstop_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012108.2	+1	reviewed	p.*296C	0.721	248	0%	347	40.1%	0	-	-	-	-	NULL
UGT2A3	79799	genome.wustl.edu	37	4	69817445	69817445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024743.3	-1	validated	p.L12F	0.465	42	0%	44	34.1%	0	-	possibly_damaging(0.86)	tolerated(0.2)	neutral(0.382)	PatternScan_HMA_1
UGT2B28	54490	genome.wustl.edu	37	4	70276621	70276621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000436035	+1	known	p.R18Q	1.000	390	0%	531	42%	0	-	-	-	-	HMMPfam_UDPGT,superfamily_SSF53756
CABS1	85438	genome.wustl.edu	37	4	71201725	71201725	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033122.3	+1	validated	p.F323	0.000	100	0%	106	39.6%	0	-	-	-	-	NULL
PROL1	58503	genome.wustl.edu	37	4	71275511	71275511	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021225.4	+1	reviewed	p.N156H	0.000	588	0%	656	45.3%	0	-	unknown(0)	-	-	NULL
MUC7	4589	genome.wustl.edu	37	4	71347468	71347468	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145006.1	+1	reviewed	p.S336L	0.000	345	0%	440	42.7%	0	-	possibly_damaging(0.873)	tolerated(0.12)	deleterious(0.600)	NULL
GRSF1	2926	genome.wustl.edu	37	4	71691038	71691038	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000514161	-1	known	p.R393Q	0.005	45	0%	74	44.6%	104	50%	-	-	-	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
ADAMTS3	9508	genome.wustl.edu	37	4	73156675	73156675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014243.1	-1	reviewed	p.R943H	1.000	62	0%	77	40.3%	1	0%	possibly_damaging(0.952)	deleterious(0.04)	deleterious(0.744)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
THAP6	152815	genome.wustl.edu	37	4	76447105	76447105	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000508105	+1	known	p.L109I	0.002	182	0%	250	46.4%	0	-	unknown(0)	-	-	NULL
NUP54	53371	genome.wustl.edu	37	4	77055443	77055443	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017426.2	-1	reviewed	p.E199*	1.000	128	0%	191	45.5%	0	-	-	-	-	NULL
CDS1	1040	genome.wustl.edu	37	4	85569775	85569775	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001263.3	+1	reviewed	p.I441T	0.987	129	0%	176	39.8%	0	-	benign(0.366)	deleterious(0)	deleterious(0.561)	NULL
HERC6	55008	genome.wustl.edu	37	4	89352419	89352419	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017912.3	+1	validated	p.Y738H	0.993	198	0%	301	45.5%	3	66.6%	possibly_damaging(0.696)	deleterious(0.03)	deleterious(0.614)	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
TSPAN5	10098	genome.wustl.edu	37	4	99399918	99399918	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005723.3	-1	reviewed	p.N165T	1.000	112	0%	131	43.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Tetraspanin,HMMPfam_Tetraspannin
ADH6	130	genome.wustl.edu	37	4	100128601	100128601	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102470.1	-1	reviewed	e7+2	0.995	148	0%	235	46.4%	0	-	-	-	-	-
LEF1	51176	genome.wustl.edu	37	4	108999412	108999412	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016269.4	-1	reviewed	p.K324N	0.998	169	0%	237	39.7%	71	53.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box
SEC24B	10427	genome.wustl.edu	37	4	110431172	110431172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006323.2	+1	reviewed	p.R561W	1.000	318	0%	455	45.3%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_beta-sandwich domain of Sec23/24
SEC24B	10427	genome.wustl.edu	37	4	110434911	110434911	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006323.2	+1	reviewed	p.E638*	1.000	125	0%	206	40.8%	2	50%	-	-	-	HMMPfam_zf-Sec23_Sec24,superfamily_Zn-finger domain of Sec23/24,superfamily_beta-sandwich domain of Sec23/24
GAR1	54433	genome.wustl.edu	37	4	110739247	110739247	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018983.3	+1	reviewed	e2+1	1.000	122	0%	152	47.4%	0	-	-	-	-	-
PITX2	5308	genome.wustl.edu	37	4	111542467	111542467	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000325.5	-1	reviewed	p.K88	1.000	47	0%	51	47.1%	2	0%	-	-	-	superfamily_Homeodomain-like
C4orf21	55345	genome.wustl.edu	37	4	113540267	113540267	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000505019	-1	known	p.L311V	0.000	89	0%	132	48.5%	0	-	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	NULL
UGT8	7368	genome.wustl.edu	37	4	115586857	115586857	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128174.1	+1	validated	p.K329N	0.997	313	0%	400	45.3%	1	0%	benign(0.002)	tolerated(0.19)	neutral(0.050)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
NDST4	64579	genome.wustl.edu	37	4	115891702	115891702	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022569.1	-1	provisional	p.R369W	0.000	229	0%	301	45.2%	0	-	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	NULL
NDST4	64579	genome.wustl.edu	37	4	115997707	115997707	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022569.1	-1	provisional	p.I162	0.923	78	0%	96	46.9%	0	-	-	-	-	NULL
TRAM1L1	133022	genome.wustl.edu	37	4	118006209	118006209	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152402.2	-1	validated	p.A114V	0.067	150	0%	166	34.3%	1	0%	benign(0)	tolerated(0.44)	neutral(0.013)	HMMPfam_TRAM1
NDNF	79625	genome.wustl.edu	37	4	121958768	121958768	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024574.3	-1	validated	p.E120*	0.996	70	0%	74	47.3%	0	-	-	-	-	NULL
KIAA1109	84162	genome.wustl.edu	37	4	123160676	123160676	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015312.3	+1	reviewed	p.P1280R	0.103	85	0%	99	43.4%	0	-	benign(0.006)	deleterious(0.02)	neutral(0.383)	NULL
KIAA1109	84162	genome.wustl.edu	37	4	123264685	123264685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015312.3	+1	reviewed	p.S4158F	1.000	85	0%	105	40%	6	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ADAD1	132612	genome.wustl.edu	37	4	123305046	123305046	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139243.3	+1	validated	p.S152P	1.000	195	0%	237	43.9%	0	-	probably_damaging(0.964)	tolerated(0.12)	deleterious(0.667)	HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like
SPRY1	10252	genome.wustl.edu	37	4	124323012	124323012	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005841.1	+1	validated	p.Y89C	0.914	46	0%	57	43.9%	2	50%	possibly_damaging(0.93)	tolerated(0.16)	neutral(0.436)	NULL
FAT4	79633	genome.wustl.edu	37	4	126371237	126371237	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024582.4	+1	validated	p.F3022L	0.000	88	0%	101	33.7%	0	-	benign(0)	tolerated(0.76)	neutral(0.001)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
LARP1B	55132	genome.wustl.edu	37	4	129099656	129099656	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018078.2	+1	reviewed	p.S585	0.122	154	0%	199	43.2%	1	100%	-	-	-	NULL
PABPC4L	132430	genome.wustl.edu	37	4	135121241	135121241	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114734.1	-1	validated	p.E312K	0.999	212	0%	267	46.1%	1	0%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD
USP38	84640	genome.wustl.edu	37	4	144134979	144134979	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032557.5	+1	validated	p.S617L	1.000	83	0%	94	52.1%	1	0%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_UCH,superfamily_Cysteine proteinases
SMARCA5	8467	genome.wustl.edu	37	4	144445525	144445525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003601.2	+1	reviewed	p.R142Q	1.000	94	0%	127	42.5%	5	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_SSF52540
SLC10A7	84068	genome.wustl.edu	37	4	147247143	147247143	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029998.3	-1	validated	p.I147	0.765	123	0%	195	44.1%	0	-	-	-	-	HMMPfam_SBF
DCLK2	166614	genome.wustl.edu	37	4	151114356	151114356	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040260.2	+1	validated	p.R275C	1.000	429	0%	536	46.8%	0	-	possibly_damaging(0.59)	deleterious(0)	deleterious(0.648)	HMMPfam_DCX,HMMSmart_SM00537,superfamily_Doublecortin (DC)
LRBA	987	genome.wustl.edu	37	4	151842405	151842405	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006726.2	-1	validated	p.M197T	1.000	159	0%	172	45.3%	0	-	benign(0.051)	deleterious(0.01)	neutral(0.409)	superfamily_Concanavalin A-like lectins/glucanases,superfamily_ARM repeat
FBXW7	55294	genome.wustl.edu	37	4	153244185	153244185	+	Nonsense_Mutation	SNP	G	G	A	rs144247898		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033632.2	-1	reviewed	p.R658*	1.000	246	0%	304	45.4%	3	33.3%	-	-	-	HMMSmart_SM00320
FBXW7	55294	genome.wustl.edu	37	4	153332919	153332919	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033632.2	-1	reviewed	p.R13*	1.000	134	0%	168	45.2%	4	75%	-	-	-	NULL
GRIA2	2891	genome.wustl.edu	37	4	158282167	158282167	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083619.1	+1	reviewed	p.A766V	1.000	220	0%	255	40.8%	0	-	benign(0.005)	deleterious(0.01)	neutral(0.406)	HMMPfam_Lig_chan,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II
RAPGEF2	9693	genome.wustl.edu	37	4	160252620	160252620	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014247.2	+1	validated	p.F341S	1.000	123	0%	190	42.6%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_RasGEF_N,HMMSmart_RasGEFN,superfamily_Ras_GEF
RAPGEF2	9693	genome.wustl.edu	37	4	160274670	160274670	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014247.2	+1	validated	p.L1214V	0.993	76	1.3%	79	59.5%	8	50%	benign(0.05)	deleterious(0.03)	neutral(0.367)	NULL
NPY5R	4889	genome.wustl.edu	37	4	164272516	164272516	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006174.2	+1	provisional	p.R364Q	0.974	199	0%	231	49.4%	0	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_7tm_1,superfamily_SSF81321
TKTL2	84076	genome.wustl.edu	37	4	164393029	164393029	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032136.4	-1	validated	p.V620I	1.000	134	0%	141	48.9%	0	-	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	superfamily_Transketo_C_like
TKTL2	84076	genome.wustl.edu	37	4	164393031	164393031	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032136.4	-1	validated	p.A619V	1.000	132	0%	139	42.4%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Transketo_C_like
GALNTL6	442117	genome.wustl.edu	37	4	173734789	173734789	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001034845.2	+1	validated	p.R280*	1.000	50	0%	70	42.9%	0	-	-	-	-	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
CEP44	80817	genome.wustl.edu	37	4	175231080	175231080	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145314.1	+1	validated	p.S253L	0.000	140	0%	191	45%	0	-	benign(0)	tolerated(1)	-	NULL
STOX2	56977	genome.wustl.edu	37	4	184931994	184931994	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020225.1	+1	provisional	p.S668L	0.078	15	0%	23	43.5%	0	-	benign(0.032)	tolerated(0.12)	neutral(0.262)	NULL
CASP3	836	genome.wustl.edu	37	4	185553522	185553522	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004346.3	-1	reviewed	p.V69	0.094	245	0%	348	48.6%	1	100%	-	-	-	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like
CCDC110	256309	genome.wustl.edu	37	4	186379706	186379706	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152775.3	-1	validated	p.E679*	0.994	194	0%	241	45.2%	0	-	-	-	-	NULL
ZFP42	132625	genome.wustl.edu	37	4	188924697	188924697	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174900.3	+1	validated	p.R246W	0.999	74	0%	100	47%	0	-	possibly_damaging(0.893)	deleterious(0.01)	deleterious(0.758)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LRRC14B	389257	genome.wustl.edu	37	5	195280	195280	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080478.1	+1	provisional	p.E453K	0.000	37	0%	40	50%	1	0%	benign(0)	tolerated(0.94)	-	NULL
AHRR	57491	genome.wustl.edu	37	5	353861	353861	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020731.3	+1	reviewed	p.A31T	0.005	17	0%	17	41.2%	0	-	benign(0.004)	tolerated(0.35)	neutral(0.021)	NULL
C5orf38	153571	genome.wustl.edu	37	5	2752847	2752847	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178569.2	+1	provisional	p.P104	0.000	18	0%	15	46.7%	0	-	-	-	-	NULL
ADAMTS16	170690	genome.wustl.edu	37	5	5146303	5146303	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139056.2	+1	reviewed	p.I79S	0.129	20	0%	37	59.5%	6	50%	possibly_damaging(0.558)	deleterious(0.02)	deleterious(0.574)	NULL
TRIO	7204	genome.wustl.edu	37	5	14293230	14293230	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007118.2	+1	validated	p.A388G	1.000	77	0%	80	43.8%	13	30.7%	unknown(0)	tolerated(0.06)	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
FAM105A	54491	genome.wustl.edu	37	5	14610362	14610362	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019018.2	+1	validated	p.D337G	1.000	54	0%	50	32%	2	50%	benign(0.009)	deleterious(0.04)	neutral(0.349)	NULL
PRDM9	56979	genome.wustl.edu	37	5	23522948	23522948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020227.2	+1	provisional	p.R279Q	0.973	46	0%	63	39.7%	0	-	possibly_damaging(0.516)	tolerated(1)	neutral(0.173)	HMMSmart_SET,superfamily_SSF82199
CDH10	1008	genome.wustl.edu	37	5	24509906	24509906	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006727.2	-1	reviewed	p.R342I	0.794	118	0%	155	43.2%	0	-	probably_damaging(0.994)	deleterious(0.04)	deleterious(0.801)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
ADAMTS12	81792	genome.wustl.edu	37	5	33751564	33751564	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030955.2	-1	reviewed	p.I193	0.457	126	0%	162	37.7%	0	-	-	-	-	HMMPfam_Pep_M12B_propep
RXFP3	51289	genome.wustl.edu	37	5	33937393	33937393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016568.3	+1	validated	p.S183L	0.995	39	0%	26	53.8%	0	-	possibly_damaging(0.598)	deleterious(0.01)	deleterious(0.613)	HMMPfam_7tm_1,superfamily_SSF81321
RAI14	26064	genome.wustl.edu	37	5	34803837	34803837	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145525.1	+1	validated	p.A96T	0.996	67	0%	70	50%	36	13.8%	possibly_damaging(0.889)	deleterious(0)	deleterious(0.794)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
SPEF2	79925	genome.wustl.edu	37	5	35793302	35793302	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024867.3	+1	validated	p.F1532	0.167	107	0%	128	35.2%	6	16.6%	-	-	-	NULL
MRPS30	10884	genome.wustl.edu	37	5	44811174	44811174	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016640.3	+1	reviewed	p.R222Q	1.000	180	0%	225	47.1%	9	55.5%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_PDCD9
PPAP2A	8611	genome.wustl.edu	37	5	54721147	54721147	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176895.1	-1	reviewed	p.D249N	1.000	178	0%	291	41.2%	1	0%	possibly_damaging(0.483)	tolerated(0.06)	deleterious(0.483)	HMMPfam_PAP2,superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase
DDX4	54514	genome.wustl.edu	37	5	55063726	55063726	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024415.2	+1	validated	p.E118K	1.000	128	0%	161	42.2%	0	-	unknown(0)	-	-	NULL
IL31RA	133396	genome.wustl.edu	37	5	55212787	55212787	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139017.4	+1	validated	p.R712C	0.000	64	0%	54	51.9%	0	-	benign(0)	tolerated(0.12)	neutral(0.261)	NULL
DEPDC1B	55789	genome.wustl.edu	37	5	59893588	59893588	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018369.2	-1	validated	p.R528*	1.000	255	0%	383	42.8%	1	0%	-	-	-	NULL
MARVELD2	153562	genome.wustl.edu	37	5	68737429	68737429	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001038603.2	+1	validated	p.R542I	1.000	205	0%	263	46.4%	0	-	probably_damaging(0.989)	deleterious(0.02)	deleterious(0.823)	HMMPfam_Occludin_ELL
GFM2	84340	genome.wustl.edu	37	5	74021922	74021922	+	Silent	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032380.3	-1	reviewed	p.R586	0.657	118	0%	156	45.5%	5	20%	-	-	-	superfamily_Ribosomal protein S5 domain 2-like
IQGAP2	10788	genome.wustl.edu	37	5	75888751	75888751	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006633.2	+1	validated	e9+1	1.000	94	0%	128	42.2%	0	-	-	-	-	-
RASA1	5921	genome.wustl.edu	37	5	86674233	86674233	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002890.1	+1	reviewed	p.R789*	1.000	96	0%	132	49.2%	6	0%	-	-	-	HMMPfam_RasGAP,HMMSmart_SM00323,superfamily_GTPase activation domain GAP
RASA1	5921	genome.wustl.edu	37	5	86676356	86676356	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002890.1	+1	reviewed	p.Q878H	1.000	242	0%	295	46.4%	2	50%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_RasGAP,HMMSmart_SM00323,superfamily_GTPase activation domain GAP
MEF2C	4208	genome.wustl.edu	37	5	88018658	88018658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000506554	-1	known	p.F371S	1.000	155	0%	204	43.6%	2	0%	unknown(0)	tolerated(0.8)	-	NULL
FAM172A	83989	genome.wustl.edu	37	5	92956759	92956759	+	Silent	SNP	G	G	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032042.5	-1	validated	p.A395	0.930	31	0%	18	50%	6	50%	-	-	-	NULL
FAM172A	83989	genome.wustl.edu	37	5	93217243	93217243	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032042.5	-1	validated	p.R240Q	1.000	409	0%	508	44.1%	0	-	possibly_damaging(0.946)	tolerated(0.42)	neutral(0.404)	HMMPfam_Arb2
KIAA0825	285600	genome.wustl.edu	37	5	93820574	93820574	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145678.1	-1	validated	p.F344	0.979	137	0%	202	43.6%	0	-	-	-	-	NULL
LNPEP	4012	genome.wustl.edu	37	5	96315297	96315297	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005575.2	+1	reviewed	p.K159*	1.000	66	0%	107	47.7%	0	-	-	-	-	superfamily_Leukotriene A4 hydrolase N-terminal domain
FER	2241	genome.wustl.edu	37	5	108171463	108171463	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005246.2	+1	reviewed	p.E146*	1.000	124	0%	132	34.8%	0	-	-	-	-	NULL
WDR36	134430	genome.wustl.edu	37	5	110443024	110443024	+	Silent	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139281.2	+1	reviewed	p.I460	0.996	151	0%	198	40.9%	2	50%	-	-	-	superfamily_WD40_like
APC	324	genome.wustl.edu	37	5	112173917	112173917	+	Nonsense_Mutation	SNP	C	C	T	rs121913333		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000038.4	+1	reviewed	p.R876*	1.000	62	0%	115	53%	0	-	-	-	-	NULL
APC	324	genome.wustl.edu	37	5	112175639	112175639	+	Nonsense_Mutation	SNP	C	C	T	rs121913332		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000038.4	+1	reviewed	p.R1450*	1.000	139	0%	179	48%	0	-	-	-	-	NULL
DCP2	167227	genome.wustl.edu	37	5	112328433	112328433	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152624.4	+1	validated	p.K133T	1.000	197	0%	259	42.1%	0	-	possibly_damaging(0.654)	deleterious(0.01)	deleterious(0.636)	HMMPfam_NUDIX,superfamily_Nudix,PatternScan_NUDIX
YTHDC2	64848	genome.wustl.edu	37	5	112888986	112888986	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022828.3	+1	validated	p.F599	1.000	97	0%	136	36%	0	-	-	-	-	superfamily_SSF52540
CCDC112	153733	genome.wustl.edu	37	5	114607090	114607090	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040440.2	-1	validated	p.E384D	1.000	476	0%	609	43.5%	0	-	possibly_damaging(0.837)	tolerated(0.49)	neutral(0.330)	NULL
CCDC112	153733	genome.wustl.edu	37	5	114620507	114620507	+	Silent	SNP	G	G	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040440.2	-1	validated	p.R72	0.972	115	0%	154	50%	1	0%	-	-	-	NULL
PRR16	51334	genome.wustl.edu	37	5	120022105	120022105	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016644.1	+1	provisional	p.R183W	0.963	62	0%	84	51.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF608	57507	genome.wustl.edu	37	5	123980330	123980330	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020747.2	-1	validated	p.H1244N	1.000	72	0%	102	31.4%	1	0%	possibly_damaging(0.891)	tolerated(1)	neutral(0.350)	NULL
ZNF608	57507	genome.wustl.edu	37	5	124080429	124080429	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020747.2	-1	validated	p.F85C	1.000	240	0%	304	41.8%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
SLC12A2	6558	genome.wustl.edu	37	5	127520157	127520157	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001046.2	+1	validated	p.R1133	1.000	219	0%	311	44.4%	12	50%	-	-	-	NULL
ACSL6	23305	genome.wustl.edu	37	5	131326623	131326623	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009185.1	-1	validated	p.G103D	0.970	25	0%	15	33.3%	0	-	benign(0)	tolerated(1)	-	superfamily_SSF56801
CDKL3	51265	genome.wustl.edu	37	5	133643848	133643848	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113575.1	-1	reviewed	p.L449F	0.083	129	0%	198	47%	2	50%	benign(0.002)	tolerated(0.14)	neutral(0.249)	NULL
CDKL3	51265	genome.wustl.edu	37	5	133702067	133702067	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113575.1	-1	reviewed	p.E50*	1.000	182	0%	256	46.9%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PKD2L2	27039	genome.wustl.edu	37	5	137235301	137235301	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014386.2	+1	validated	p.S207	0.968	143	0%	179	47.5%	0	-	-	-	-	HMMPfam_PKD_channel
PKD2L2	27039	genome.wustl.edu	37	5	137242064	137242064	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014386.2	+1	validated	p.E306*	0.931	271	0.4%	431	42.7%	0	-	-	-	-	HMMPfam_PKD_channel
WNT8A	7478	genome.wustl.edu	37	5	137420265	137420265	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_058244.2	+1	reviewed	p.E61K	1.000	53	0%	53	45.3%	0	-	possibly_damaging(0.892)	deleterious(0.03)	deleterious(0.716)	HMMPfam_wnt,HMMSmart_SM00097
KDM3B	51780	genome.wustl.edu	37	5	137767186	137767186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016604.3	+1	validated	p.R1715C	1.000	71	0%	104	45.2%	43	55.8%	benign(0.157)	tolerated(0.16)	neutral(0.073)	HMMSmart_SM00558,superfamily_Clavaminate synthase-like
MATR3	9782	genome.wustl.edu	37	5	138661049	138661049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000394800	+1	known	p.S738L	1.000	23	0%	33	33.3%	5	40%	benign(0)	tolerated(0.35)	neutral(0.021)	NULL
PCDHA6	56142	genome.wustl.edu	37	5	140208566	140208566	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018909.2	+1	reviewed	p.R297Q	0.000	80	0%	100	48%	0	-	benign(0.011)	tolerated(0.09)	neutral(0.297)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA11	56138	genome.wustl.edu	37	5	140249494	140249494	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018902.3	+1	reviewed	p.R269Q	0.000	39	0%	53	50.9%	1	100%	benign(0.006)	tolerated(0.33)	neutral(0.024)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA13	56136	genome.wustl.edu	37	5	140262269	140262269	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018904.2	+1	reviewed	p.R139Q	0.000	105	0%	98	40.8%	0	-	benign(0.222)	tolerated(0.66)	neutral(0.024)	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHAC1	56135	genome.wustl.edu	37	5	140308704	140308704	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018898.3	+1	reviewed	p.D743Y	0.995	122	0%	153	45.1%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
PCDHB3	56132	genome.wustl.edu	37	5	140480968	140480968	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018937.2	+1	reviewed	p.P245	0.000	27	0%	48	35.4%	2	50%	-	-	-	superfamily_Cadherin-like
PCDHB15	56121	genome.wustl.edu	37	5	140626688	140626688	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018935.2	+1	reviewed	p.F514	0.998	41	0%	45	33.3%	2	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHGA4	56111	genome.wustl.edu	37	5	140737062	140737062	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018917.2	+1	reviewed	p.K765N	0.989	73	0%	92	44.6%	2	50%	-	-	-	NULL
PCDHGC3	5098	genome.wustl.edu	37	5	140856895	140856895	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002588.2	+1	reviewed	p.K404N	1.000	61	0%	53	43.4%	14	57.1%	probably_damaging(0.998)	tolerated(0.56)	deleterious(0.481)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
KCTD16	57528	genome.wustl.edu	37	5	143586978	143586978	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020768.3	+1	validated	p.E234G	1.000	86	0%	74	43.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SPINK5	11005	genome.wustl.edu	37	5	147478852	147478852	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127698.1	+1	reviewed	p.E356*	0.756	141	0%	198	42.4%	0	-	-	-	-	NULL
ABLIM3	22885	genome.wustl.edu	37	5	148617051	148617051	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014945.2	+1	validated	p.A310V	1.000	80	1.3%	102	44.1%	0	-	probably_damaging(0.954)	deleterious(0.01)	deleterious(0.803)	NULL
PCYOX1L	78991	genome.wustl.edu	37	5	148742293	148742293	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024028.3	+1	validated	p.G61E	0.718	36	0%	30	26.7%	14	28.5%	possibly_damaging(0.8)	tolerated(0.86)	neutral(0.301)	HMMPfam_DAO,superfamily_FAD/NAD(P)-binding domain
FAM114A2	10827	genome.wustl.edu	37	5	153390854	153390854	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018691.2	-1	validated	p.T314P	1.000	132	0%	185	43.8%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
SLIT3	6586	genome.wustl.edu	37	5	168123364	168123364	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003062.2	-1	validated	p.C1005	0.337	113	0%	122	50%	12	0%	-	-	-	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_CA,superfamily_EGF/Laminin
FAF2	23197	genome.wustl.edu	37	5	175919247	175919247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014613.2	+1	reviewed	p.V133I	1.000	100	0%	157	45.9%	6	50%	benign(0.051)	tolerated(0.06)	neutral(0.326)	NULL
GPRIN1	114787	genome.wustl.edu	37	5	176026161	176026161	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052899.2	-1	validated	p.T225	0.000	35	0%	57	54.4%	0	-	-	-	-	NULL
HK3	3101	genome.wustl.edu	37	5	176323148	176323148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002115.2	-1	reviewed	p.G5R	0.029	38	0%	45	42.2%	0	-	possibly_damaging(0.631)	deleterious(0.02)	deleterious(0.604)	NULL
RNF130	55819	genome.wustl.edu	37	5	179405223	179405223	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018434.4	-1	reviewed	p.V276	0.979	121	0%	188	47.3%	84	46.4%	-	-	-	HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850
MYLK4	340156	genome.wustl.edu	37	6	2685747	2685747	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012418.3	-1	validated	p.K135N	1.000	67	0%	74	40.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
F13A1	2162	genome.wustl.edu	37	6	6225075	6225075	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000129.3	-1	reviewed	p.E273K	0.864	48	0%	53	47.2%	2	0%	benign(0.001)	tolerated(0.2)	neutral(0.049)	superfamily_SSF54001
CAGE1	285782	genome.wustl.edu	37	6	7356295	7356295	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000502583	-1	known	p.D754G	0.998	510	0%	674	44.2%	0	-	benign(0.063)	deleterious(0)	neutral(0.449)	NULL
DSP	1832	genome.wustl.edu	37	6	7583375	7583375	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004415.2	+1	reviewed	p.T1960	0.003	100	0%	126	46.8%	20	30%	-	-	-	NULL
DSP	1832	genome.wustl.edu	37	6	7584968	7584968	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004415.2	+1	reviewed	p.E2491D	0.843	83	0%	120	45%	50	60%	benign(0)	tolerated(0.53)	neutral(0.007)	HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Plakin repeat
BMP6	654	genome.wustl.edu	37	6	7862669	7862669	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001718.4	+1	reviewed	p.R381Q	0.567	38	0%	29	62.1%	3	0%	possibly_damaging(0.85)	deleterious(0.03)	deleterious(0.692)	NULL
ELOVL2	54898	genome.wustl.edu	37	6	11000334	11000334	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017770.3	-1	validated	p.E107K	1.000	170	0%	243	41.2%	0	-	benign(0.016)	tolerated(0.13)	neutral(0.253)	HMMPfam_ELO
HIVEP1	3096	genome.wustl.edu	37	6	12120281	12120281	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002114.2	+1	validated	p.A85T	0.000	140	0%	217	46.5%	0	-	benign(0)	tolerated(0.18)	neutral(0.056)	NULL
TBC1D7	51256	genome.wustl.edu	37	6	13327056	13327056	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143964.1	-1	validated	p.K25N	1.000	201	0%	279	13.3%	8	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Ypt/Rab-GAP domain of gyp1p
HIST1H3G	8355	genome.wustl.edu	37	6	26271326	26271326	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003534.2	-1	reviewed	p.A96G	1.000	51	0%	54	50%	1	0%	benign(0.001)	-	-	HMMSmart_SM00428,HMMPfam_Histone,superfamily_Histone-fold
PGBD1	84547	genome.wustl.edu	37	6	28269871	28269871	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032507.3	+1	reviewed	p.S747L	0.822	118	0%	160	43.1%	5	60%	possibly_damaging(0.832)	tolerated(0.06)	deleterious(0.639)	NULL
MDC1	9656	genome.wustl.edu	37	6	30672771	30672771	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014641.2	-1	reviewed	p.N1397H	0.001	158	0%	251	45.8%	5	60%	benign(0.005)	tolerated(0.13)	neutral(0.253)	NULL
CYP21A2	1589	genome.wustl.edu	37	6	32006555	32006555	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000500.5	+1	reviewed	p.A87T	0.458	97	0%	99	34.3%	1	100%	benign(0.029)	tolerated(0.09)	neutral(0.298)	HMMPfam_p450,superfamily_Cytochrome_P450
MLN	4295	genome.wustl.edu	37	6	33768936	33768936	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002418.2	-1	reviewed	p.V2G	1.000	22	0%	37	35.1%	0	-	possibly_damaging(0.881)	deleterious(0)	deleterious(0.788)	NULL
TAF11	6882	genome.wustl.edu	37	6	34847766	34847766	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005643.2	-1	reviewed	p.F161	1.000	230	0%	348	39.1%	10	0%	-	-	-	HMMPfam_TAFII28,superfamily_Histone-fold
ARMC12	221481	genome.wustl.edu	37	6	35715059	35715059	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145028.3	+1	predicted	p.E183K	0.996	149	0%	153	37.3%	2	50%	probably_damaging(0.996)	tolerated(0.12)	deleterious(0.722)	HMMPfam_DUF634,superfamily_ARM-type_fold
SRPK1	6732	genome.wustl.edu	37	6	35854584	35854584	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003137.3	-1	reviewed	p.R132H	0.999	222	0%	332	50.9%	3	66.6%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PNPLA1	285848	genome.wustl.edu	37	6	36270181	36270181	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145716.1	+1	validated	p.R354Q	0.000	47	0%	79	51.9%	0	-	benign(0.012)	tolerated(0.38)	neutral(0.018)	NULL
MTCH1	23787	genome.wustl.edu	37	6	36945015	36945015	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014341.1	-1	provisional	p.R221C	1.000	13	0%	20	40%	298	47.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Mitochondrial carrier
BTBD9	114781	genome.wustl.edu	37	6	38548205	38548205	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099272.1	-1	reviewed	p.E275*	1.000	79	0%	136	43.4%	0	-	-	-	-	superfamily_Gal_bind_like
ENPP5	59084	genome.wustl.edu	37	6	46133195	46133195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021572.4	-1	validated	p.R312Q	0.270	263	0.4%	332	42.2%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Phosphodiest,superfamily_Alkaline phosphatase-like
TNFRSF21	27242	genome.wustl.edu	37	6	47253803	47253803	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014452.3	-1	reviewed	p.N209D	1.000	89	0%	74	43.2%	161	44%	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	HMMSmart_TNFR
OPN5	221391	genome.wustl.edu	37	6	47754306	47754306	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181744.2	+1	reviewed	p.K62N	1.000	208	0%	313	48.2%	0	-	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	HMMPfam_7tm_1,superfamily_SSF81321
CRISP2	7180	genome.wustl.edu	37	6	49665641	49665641	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142407.1	-1	validated	p.G149	0.995	202	0%	239	52.7%	0	-	-	-	-	HMMSmart_SM00198,HMMPfam_SCP,superfamily_PR-1-like
TFAP2D	83741	genome.wustl.edu	37	6	50712944	50712944	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172238.3	+1	validated	p.K336N	1.000	165	0%	234	42.3%	0	-	benign(0.012)	tolerated(1)	neutral(0.001)	HMMPfam_TF_AP-2
DST	667	genome.wustl.edu	37	6	56362287	56362287	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015548.4	-1	reviewed	p.E4082K	1.000	118	0%	130	41.5%	3	0%	possibly_damaging(0.946)	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DST	667	genome.wustl.edu	37	6	56484057	56484057	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001723.5	-1	reviewed	p.R1592I	0.935	189	0%	260	10.8%	0	-	probably_damaging(0.976)	deleterious(0.01)	deleterious(0.824)	NULL
EYS	346007	genome.wustl.edu	37	6	66200512	66200512	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142800.1	-1	reviewed	p.I279M	0.923	150	0%	179	41.3%	0	-	probably_damaging(0.983)	tolerated(0.11)	deleterious(0.701)	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_EGF/Laminin
BAI3	577	genome.wustl.edu	37	6	69349008	69349008	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001704.2	+1	reviewed	p.E147D	0.997	82	0%	110	53.6%	0	-	benign(0)	tolerated(0.61)	neutral(0.004)	NULL
LMBRD1	55788	genome.wustl.edu	37	6	70386117	70386117	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018368.3	-1	reviewed	p.S519L	1.000	246	0%	314	45.9%	13	61.5%	probably_damaging(0.996)	tolerated(0.13)	deleterious(0.714)	NULL
SMAP1	60682	genome.wustl.edu	37	6	71566692	71566692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001044305.1	+1	reviewed	p.S307F	1.000	111	0%	152	35.5%	8	37.5%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
RIMS1	22999	genome.wustl.edu	37	6	73000540	73000540	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014989.4	+1	reviewed	p.A1238V	1.000	54	0%	67	35.8%	0	-	possibly_damaging(0.496)	tolerated(0.16)	neutral(0.225)	NULL
FILIP1	27145	genome.wustl.edu	37	6	76024624	76024624	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015687.2	-1	validated	p.S308	0.001	284	0%	334	40.7%	0	-	-	-	-	HMMPfam_CortBP2
CYB5R4	51167	genome.wustl.edu	37	6	84603248	84603248	+	Silent	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016230.3	+1	validated	p.V79	1.000	246	0%	308	43.8%	2	100%	-	-	-	HMMPfam_Cyt-b5,superfamily_Cyt_B5
SNX14	57231	genome.wustl.edu	37	6	86238022	86238022	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153816.3	-1	reviewed	p.E651	1.000	321	0%	422	46.7%	3	66.6%	-	-	-	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
PNISR	25957	genome.wustl.edu	37	6	99848823	99848823	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015491.1	-1	validated	p.R671*	1.000	528	0%	665	42.4%	35	34.2%	-	-	-	NULL
PREP	5550	genome.wustl.edu	37	6	105821283	105821283	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002726.3	-1	reviewed	p.F186L	1.000	132	0%	180	45.6%	42	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_S9_N,superfamily_Peptidase_S9A_N
AKD1	221264	genome.wustl.edu	37	6	109814732	109814732	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000424296	-1	known	p.K938T	1.000	151	0%	204	48.5%	1	100%	possibly_damaging(0.719)	deleterious(0.04)	deleterious(0.609)	NULL
LAMA4	3910	genome.wustl.edu	37	6	112454034	112454034	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105206.1	-1	reviewed	p.S1252Y	1.000	175	0%	260	48.1%	0	-	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	superfamily_Concanavalin A-like lectins/glucanases
FAM26F	441168	genome.wustl.edu	37	6	116784637	116784637	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010919.1	+1	predicted	p.C239W	0.998	137	0%	195	46.2%	1	100%	probably_damaging(0.989)	deleterious(0.02)	deleterious(0.823)	NULL
BET3L	100128327	genome.wustl.edu	37	6	116864552	116864552	+	Silent	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001139444.2	-1	validated	p.L18	0.989	137	0%	228	41.7%	0	-	-	-	-	HMMPfam_TRAPP
RSPH4A	345895	genome.wustl.edu	37	6	116938194	116938194	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010892.2	+1	reviewed	p.E136	0.026	107	0%	125	40.8%	5	80%	-	-	-	NULL
KPNA5	3841	genome.wustl.edu	37	6	117010567	117010567	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002269.2	+1	reviewed	p.R30Q	1.000	198	0.5%	302	40.4%	0	-	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMPfam_IBB
KPNA5	3841	genome.wustl.edu	37	6	117050820	117050820	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002269.2	+1	reviewed	p.N450H	1.000	168	0%	195	46.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
RFX6	222546	genome.wustl.edu	37	6	117201716	117201716	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173560.2	+1	validated	p.E130D	0.993	164	0%	193	44%	0	-	benign(0.01)	tolerated(0.59)	neutral(0.005)	HMMPfam_RFX_DNA_binding,superfamily_SSF46785
C6orf170	221322	genome.wustl.edu	37	6	121655505	121655505	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152730.4	-1	validated	p.K24N	1.000	58	0%	60	38.3%	0	-	probably_damaging(0.995)	tolerated(0.26)	deleterious(0.492)	NULL
HSF2	3298	genome.wustl.edu	37	6	122741341	122741341	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004506.3	+1	validated	p.E219*	1.000	272	0%	343	40.8%	0	-	-	-	-	NULL
HDDC2	51020	genome.wustl.edu	37	6	125619920	125619920	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016063.2	-1	validated	p.I83	1.000	291	0%	374	48.1%	25	12%	-	-	-	HMMSmart_SM00471,HMMPfam_HD
HINT3	135114	genome.wustl.edu	37	6	126293444	126293444	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138571.4	+1	validated	p.R120I	0.968	192	0%	225	41.3%	3	66.6%	possibly_damaging(0.903)	tolerated(0.09)	deleterious(0.654)	HMMPfam_HIT,superfamily_His_triad-like_motif
RSPO3	84870	genome.wustl.edu	37	6	127476430	127476430	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032784.3	+1	reviewed	p.K161E	0.987	147	0%	202	50.5%	2	0%	possibly_damaging(0.946)	tolerated(0.06)	deleterious(0.713)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
LAMA2	3908	genome.wustl.edu	37	6	129785508	129785508	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000426.3	+1	reviewed	p.R2356C	1.000	107	0%	148	42.6%	4	25%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_ConA_like_lec_gl
SAMD3	154075	genome.wustl.edu	37	6	130465892	130465892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017373.2	-1	validated	p.E446K	1.000	37	0%	77	42.9%	0	-	possibly_damaging(0.753)	tolerated(0.3)	neutral(0.305)	NULL
VNN2	8875	genome.wustl.edu	37	6	133072350	133072350	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004665.2	-1	reviewed	p.E378	0.000	167	0%	237	43.5%	0	-	-	-	-	NULL
NHSL1	57224	genome.wustl.edu	37	6	138754312	138754312	+	Silent	SNP	G	G	A	rs112913420	by1000genomes	TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144060.1	-1	validated	p.F390	0.007	124	0%	145	49%	2	0%	-	-	-	NULL
VTA1	51534	genome.wustl.edu	37	6	142525197	142525197	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016485.3	+1	provisional	p.S258F	0.984	259	0%	304	46.1%	15	33.3%	possibly_damaging(0.476)	tolerated(0.07)	deleterious(0.476)	HMMPfam_DUF605
SASH1	23328	genome.wustl.edu	37	6	148808762	148808762	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015278.3	+1	validated	p.E214K	0.986	21	0%	35	40%	0	-	possibly_damaging(0.647)	deleterious(0)	deleterious(0.671)	NULL
PPIL4	85313	genome.wustl.edu	37	6	149842201	149842201	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139126.2	-1	reviewed	p.G326E	1.000	278	0%	336	42%	3	33.3%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	superfamily_RNA-binding domain RBD
IYD	389434	genome.wustl.edu	37	6	150690236	150690236	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203395.2	+1	reviewed	p.A23	0.003	66	0%	95	42.1%	0	-	-	-	-	NULL
SYNE1	23345	genome.wustl.edu	37	6	152651599	152651599	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.R4741C	0.984	83	0%	71	46.5%	0	-	probably_damaging(1)	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
VIP	7432	genome.wustl.edu	37	6	153077365	153077365	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000431366	+1	known	p.E94*	1.000	102	0%	122	36.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Hormone_2,HMMSmart_SM00070,PatternScan_GLUCAGON
PLG	5340	genome.wustl.edu	37	6	161134082	161134082	+	Missense_Mutation	SNP	G	G	A	rs141045811	by1000genomes	TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000301.3	+1	reviewed	p.D158N	0.990	81	0%	160	47.5%	0	-	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMPfam_Kringle,HMMSmart_KR,superfamily_Kringle-like,PatternScan_KRINGLE_1
PLG	5340	genome.wustl.edu	37	6	161139746	161139746	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000301.3	+1	reviewed	p.C324	0.994	75	0%	91	41.8%	0	-	-	-	-	HMMPfam_Kringle,HMMSmart_KR,superfamily_Kringle-like,PatternScan_KRINGLE_1
T	6862	genome.wustl.edu	37	6	166578343	166578343	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003181.2	-1	reviewed	p.A205T	0.998	139	0%	155	46.5%	0	-	benign(0.289)	deleterious(0.01)	deleterious(0.495)	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd
T	6862	genome.wustl.edu	37	6	166581059	166581059	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003181.2	-1	reviewed	p.E7	0.998	7	0.000	16	0.438	0	-	-	-	-	NULL
MLLT4	4301	genome.wustl.edu	37	6	168276057	168276057	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040001.1	+1	validated	p.P206	0.623	119	0%	123	41.5%	0	-	-	-	-	NULL
RNF216P1	441191	genome.wustl.edu	37	7	5028766	5028766	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000404006	+1	known	p.E53*	1.000	95	0%	138	46.4%	0	-	-	-	-	NULL
RBAK	57786	genome.wustl.edu	37	7	5104405	5104405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021163.3	+1	reviewed	p.R440W	0.731	61	0%	78	44.9%	0	-	probably_damaging(1)	tolerated(0.2)	deleterious(0.549)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CCZ1	51622	genome.wustl.edu	37	7	5939968	5939968	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015622.5	+1	validated	p.K58N	1.000	426	0%	646	35.1%	3	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_DUF2049
ENSG00000198580	0	genome.wustl.edu	37	7	6713789	6713789	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000401847	+1	known	p.R61I	1.000	7	0.000	11	0.727	0	-	benign(0.001)	deleterious(0.01)	neutral(0.406)	superfamily_C2H2 and C2HC zinc fingers
ZNF12	7559	genome.wustl.edu	37	7	6730531	6730531	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016265.3	-1	reviewed	p.R681I	1.000	167	0%	248	46%	0	-	probably_damaging(0.996)	tolerated(0.09)	deleterious(0.758)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF12	7559	genome.wustl.edu	37	7	6730862	6730862	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016265.3	-1	reviewed	p.H571N	1.000	103	0%	148	39.2%	0	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
DGKB	1607	genome.wustl.edu	37	7	14378235	14378235	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004080.2	-1	reviewed	p.S677Y	1.000	221	0%	270	44.4%	0	-	benign(0.093)	deleterious(0.01)	neutral(0.413)	HMMPfam_DAGK_acc,HMMSmart_SM00045
ISPD	729920	genome.wustl.edu	37	7	16298581	16298581	+	Silent	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001101426.3	-1	validated	p.I330	0.016	94	0%	133	43.6%	2	0%	-	-	-	NULL
SOSTDC1	25928	genome.wustl.edu	37	7	16502378	16502378	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015464.2	-1	reviewed	p.R139H	1.000	116	0%	103	41.7%	19	73.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sclerostin
DNAH11	8701	genome.wustl.edu	37	7	21924013	21924013	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003777.3	+1	reviewed	p.F4171	1.000	85	0%	113	46.9%	1	100%	-	-	-	HMMPfam_Dynein_heavy
FAM126A	84668	genome.wustl.edu	37	7	22985591	22985591	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032581.3	-1	reviewed	p.E395*	1.000	95	0%	142	45.1%	0	-	-	-	-	NULL
PDE1C	5137	genome.wustl.edu	37	7	31864484	31864484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005020.1	-1	provisional	p.S468L	1.000	89	0%	89	43.8%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	superfamily_SSF109604
ELMO1	9844	genome.wustl.edu	37	7	37251016	37251016	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014800.9	-1	reviewed	p.R354Q	1.000	103	0%	141	43.3%	4	25%	benign(0.269)	tolerated(0.46)	neutral(0.041)	HMMPfam_ELMO_CED12
SFRP4	6424	genome.wustl.edu	37	7	37951817	37951817	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003014.3	-1	reviewed	p.R232Q	0.983	224	0%	278	43.2%	12	8.3%	benign(0.172)	deleterious(0.01)	neutral(0.421)	superfamily_TIMP_like,HMMPfam_NTR,HMMSmart_C345C
GLI3	2737	genome.wustl.edu	37	7	42005181	42005181	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000168.5	-1	reviewed	p.E1164K	1.000	33	0%	22	45.5%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
GLI3	2737	genome.wustl.edu	37	7	42079764	42079764	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000168.5	-1	reviewed	p.D301N	1.000	159	0%	197	41.6%	5	0%	possibly_damaging(0.929)	deleterious(0)	deleterious(0.821)	NULL
C7orf25	79020	genome.wustl.edu	37	7	42950356	42950356	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099858.1	-1	validated	p.F106L	0.993	201	0%	253	40.7%	1	100%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_DUF1308
PSMA2	5683	genome.wustl.edu	37	7	42964341	42964341	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002787.4	-1	reviewed	p.E103*	1.000	135	0%	182	41.8%	127	4.7%	-	-	-	HMMPfam_Proteasome,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)
OGDH	4967	genome.wustl.edu	37	7	44664106	44664106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002541.3	+1	reviewed	p.S55L	0.999	97	0%	114	39.5%	9	55.5%	possibly_damaging(0.594)	deleterious(0.03)	deleterious(0.570)	NULL
OGDH	4967	genome.wustl.edu	37	7	44714840	44714840	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002541.3	+1	reviewed	p.F333	0.791	69	0%	98	41.8%	15	33.3%	-	-	-	HMMPfam_E1_dh,superfamily_SSF52518
GRB10	2887	genome.wustl.edu	37	7	50685802	50685802	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005311.4	-1	reviewed	p.Q271P	1.000	117	0%	131	44.3%	0	-	possibly_damaging(0.88)	tolerated(0.14)	deleterious(0.593)	NULL
WBSCR17	64409	genome.wustl.edu	37	7	71036293	71036293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022479.1	+1	reviewed	p.S329L	0.999	164	0%	229	46.7%	0	-	benign(0.319)	tolerated(1)	neutral(0.100)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
LAT2	7462	genome.wustl.edu	37	7	73634560	73634560	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014146.3	+1	reviewed	p.L81	0.860	63	0%	90	47.8%	3	33.3%	-	-	-	NULL
MDH2	4191	genome.wustl.edu	37	7	75695641	75695641	+	Silent	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005918.2	+1	reviewed	p.S310	0.888	45	0%	89	21.3%	137	17.5%	-	-	-	HMMPfam_Ldh_1_C,superfamily_Lactate_DH/Glyco_hydro_4_C
PHTF2	57157	genome.wustl.edu	37	7	77522973	77522973	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127357.1	+1	validated	p.E32K	1.000	208	0%	343	41.7%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
CD36	948	genome.wustl.edu	37	7	80303417	80303417	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000072.3	+1	reviewed	p.A458D	0.998	249	0%	362	43.4%	0	-	possibly_damaging(0.687)	deleterious(0.01)	deleterious(0.651)	NULL
HGF	3082	genome.wustl.edu	37	7	81346567	81346567	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000601.4	-1	reviewed	p.D462E	1.000	133	0%	190	46.3%	0	-	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	HMMPfam_Kringle,HMMSmart_SM00130,superfamily_Kringle-like
PCLO	27445	genome.wustl.edu	37	7	82476539	82476539	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033026.5	-1	validated	p.G4560E	1.000	167	0%	185	43.2%	0	-	unknown(0)	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
PCLO	27445	genome.wustl.edu	37	7	82584596	82584596	+	Silent	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033026.5	-1	validated	p.S1891	1.000	244	0%	313	41.5%	0	-	-	-	-	NULL
KIAA1324L	222223	genome.wustl.edu	37	7	86521173	86521173	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142749.2	-1	validated	p.T966M	1.000	134	0.7%	173	38.2%	0	-	possibly_damaging(0.952)	deleterious(0.03)	deleterious(0.760)	NULL
KIAA1324L	222223	genome.wustl.edu	37	7	86522377	86522377	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142749.2	-1	validated	p.K909Q	1.000	107	0%	108	43.5%	3	100%	benign(0.299)	tolerated(0.47)	neutral(0.103)	NULL
CROT	54677	genome.wustl.edu	37	7	86991113	86991113	+	Silent	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143935.1	+1	reviewed	p.S192	0.995	126	0%	141	48.9%	1	100%	-	-	-	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases
ABCB1	5243	genome.wustl.edu	37	7	87179256	87179256	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000927.3	-1	reviewed	p.R489C	1.000	169	0%	229	50.7%	0	-	probably_damaging(0.96)	tolerated(0.06)	deleterious(0.726)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
SAMD9	54809	genome.wustl.edu	37	7	92731165	92731165	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017654.2	-1	validated	p.R1416*	0.095	157	0%	208	40.4%	1	100%	-	-	-	NULL
CCDC132	55610	genome.wustl.edu	37	7	92963457	92963457	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017667.2	+1	validated	p.S669N	1.000	178	0%	230	44.8%	3	33.3%	possibly_damaging(0.807)	deleterious(0.04)	deleterious(0.653)	NULL
PPP1R9A	55607	genome.wustl.edu	37	7	94539496	94539496	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017650.2	+1	validated	p.R24Q	1.000	39	0%	57	43.9%	0	-	unknown(0)	tolerated(0.12)	-	NULL
DYNC1I1	1780	genome.wustl.edu	37	7	95614127	95614127	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004411.4	+1	validated	p.A211V	0.997	115	0%	154	44.8%	0	-	benign(0)	tolerated(0.41)	neutral(0.015)	superfamily_WD40 repeat-like
DYNC1I1	1780	genome.wustl.edu	37	7	95614248	95614248	+	Silent	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004411.4	+1	validated	p.I251	1.000	155	0%	276	51.8%	0	-	-	-	-	superfamily_WD40 repeat-like
ASNS	440	genome.wustl.edu	37	7	97482687	97482687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001673.4	-1	reviewed	p.R417K	1.000	137	0%	180	46.7%	5	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Asn_synthase,superfamily_SSF52402
AZGP1	563	genome.wustl.edu	37	7	99565730	99565730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000411734	-1	known	p.D218N	0.000	44	0%	63	42.9%	0	-	unknown(0)	tolerated(1)	-	NULL
MUC12	10071	genome.wustl.edu	37	7	100642736	100642736	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000379442	+1	known	p.E3107	0.002	901	0.2%	1138	8.4%	0	-	-	-	-	NULL
CUX1	1523	genome.wustl.edu	37	7	101758501	101758501	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181552.2	+1	reviewed	p.R208*	1.000	153	0%	196	46.9%	1	0%	-	-	-	NULL
RELN	5649	genome.wustl.edu	37	7	103207069	103207069	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005045.3	-1	reviewed	p.R1576*	1.000	61	0%	92	38%	0	-	-	-	-	NULL
ATXN7L1	222255	genome.wustl.edu	37	7	105305536	105305536	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020725.1	-1	validated	p.A185	0.042	226	0%	389	45.5%	0	-	-	-	-	NULL
SLC26A4	5172	genome.wustl.edu	37	7	107341555	107341555	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000441.1	+1	reviewed	p.D573Y	1.000	135	0%	193	42.5%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_STAS,superfamily_STAS
DOCK4	9732	genome.wustl.edu	37	7	111503570	111503570	+	Silent	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000445943	-1	known	p.S765Y	1.000	51	0%	60	51.7%	1	0%	-	-	-	NULL
C7orf60	154743	genome.wustl.edu	37	7	112462308	112462308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152556.2	-1	validated	p.L237F	1.000	73	0%	84	46.4%	0	-	possibly_damaging(0.855)	tolerated(0.67)	neutral(0.333)	NULL
FOXP2	93986	genome.wustl.edu	37	7	114299666	114299666	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148898.2	+1	reviewed	p.E554*	1.000	186	0%	215	43.7%	0	-	-	-	-	HMMPfam_Fork_head,HMMSmart_FH,superfamily_SSF46785
MET	4233	genome.wustl.edu	37	7	116339804	116339804	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127500.1	+1	reviewed	p.T222	0.000	112	0%	132	46.2%	1	100%	-	-	-	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
KCND2	3751	genome.wustl.edu	37	7	120372996	120372996	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012281.2	+1	reviewed	p.I385M	0.989	192	0%	232	48.7%	0	-	possibly_damaging(0.94)	deleterious(0)	deleterious(0.830)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CADPS2	93664	genome.wustl.edu	37	7	122091447	122091447	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017954.10	-1	reviewed	p.N757H	1.000	52	0%	81	51.9%	4	75%	possibly_damaging(0.923)	tolerated(0.59)	neutral(0.377)	NULL
RNF148	378925	genome.wustl.edu	37	7	122342351	122342351	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198085.1	-1	validated	p.A152T	0.702	105	0%	135	43.7%	0	-	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	HMMPfam_PA,superfamily_SSF52025
ASB15	142685	genome.wustl.edu	37	7	123276991	123276991	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080928.3	+1	validated	p.F575V	1.000	80	0%	109	33%	0	-	benign(0.139)	deleterious(0.01)	neutral(0.418)	HMMPfam_SOCS_box,HMMSmart_SM00253
WASL	8976	genome.wustl.edu	37	7	123346375	123346375	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003941.2	-1	reviewed	p.R131Q	1.000	145	0%	191	37.2%	1	0%	benign(0.263)	tolerated(0.57)	neutral(0.034)	HMMPfam_WH1,HMMSmart_WH1,superfamily_SSF50729
MIR593	693178	genome.wustl.edu	37	7	127721947	127721947	+	RNA	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000384856	+1	known	NULL	0.000	150	0%	201	49.3%	0	-	-	-	-	-
FAM71F2	346653	genome.wustl.edu	37	7	128323110	128323110	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012454.3	+1	validated	p.R276I	0.998	80	0%	86	59.3%	0	-	probably_damaging(0.96)	deleterious(0)	deleterious(0.848)	NULL
ENSG00000245606	0	genome.wustl.edu	37	7	130008574	130008574	+	RNA	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000501661	-1	known	NULL	0.000	17	0%	11	36.4%	0	-	-	-	-	-
EXOC4	60412	genome.wustl.edu	37	7	132990779	132990779	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021807.3	+1	reviewed	p.R207Q	0.994	98	0%	140	42.9%	16	43.7%	benign(0.036)	tolerated(0.31)	neutral(0.029)	NULL
DGKI	9162	genome.wustl.edu	37	7	137151664	137151664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000453654	-1	known	p.R541Q	1.000	123	0%	142	37.3%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
TRBV6-8	28599	genome.wustl.edu	37	7	142124290	142124290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390376	-1	known	p.R63K	0.007	137	0%	157	13.4%	0	-	benign(0.001)	tolerated(0.07)	neutral(0.319)	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
ARHGEF5	7984	genome.wustl.edu	37	7	144060789	144060789	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005435.3	+1	reviewed	p.E343K	0.000	383	0%	519	26.8%	2	0%	benign(0)	deleterious(0.03)	neutral(0.364)	NULL
TPK1	27010	genome.wustl.edu	37	7	144320267	144320267	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022445.3	-1	reviewed	p.D116Y	0.075	342	0%	422	43.4%	0	-	unknown(0)	deleterious(0.02)	-	HMMPfam_TPK_catalytic,superfamily_TPK_catalytic
EZH2	2146	genome.wustl.edu	37	7	148504761	148504761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004456.3	-1	reviewed	p.E745K	1.000	105	0%	108	48.1%	71	45%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
TMEM176B	28959	genome.wustl.edu	37	7	150490234	150490234	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001101311.1	-1	validated	p.R181Q	0.000	82	0%	102	48%	224	69.1%	benign(0.003)	tolerated(0.3)	neutral(0.029)	HMMPfam_LR8
ABCF2	10061	genome.wustl.edu	37	7	150912716	150912716	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005692.3	-1	reviewed	p.R502*	0.986	118	0%	188	43.6%	74	16.2%	-	-	-	HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_SSF52540
ESYT2	57488	genome.wustl.edu	37	7	158560362	158560362	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020728.2	-1	validated	p.R351W	1.000	69	0%	99	38.4%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CSMD1	64478	genome.wustl.edu	37	8	2824263	2824263	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033225.5	-1	validated	p.S2978P	1.000	32	0%	43	53.5%	0	-	probably_damaging(0.99)	tolerated(0.06)	deleterious(0.764)	superfamily_Complement control module/SCR domain
CSMD1	64478	genome.wustl.edu	37	8	3008926	3008926	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033225.5	-1	validated	p.I2009	0.032	141	0%	191	44.5%	0	-	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
ANGPT2	285	genome.wustl.edu	37	8	6420363	6420363	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001147.2	-1	reviewed	p.K31N	0.974	78	0%	79	44.3%	4	0%	possibly_damaging(0.61)	deleterious(0)	deleterious(0.656)	NULL
MTMR7	9108	genome.wustl.edu	37	8	17163438	17163438	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004686.4	-1	reviewed	p.E394*	1.000	117	0%	185	41.1%	0	-	-	-	-	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
MTMR7	9108	genome.wustl.edu	37	8	17198899	17198899	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004686.4	-1	reviewed	p.F235	1.000	61	0%	68	41.2%	1	0%	-	-	-	HMMPfam_Myotub-related,superfamily_(Phosphotyrosine protein) phosphatases II
NEFL	4747	genome.wustl.edu	37	8	24813204	24813204	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000221169	-1	known	p.A276T	1.000	46	0%	41	53.7%	2	50%	-	-	-	HMMPfam_Filament
DPYSL2	1808	genome.wustl.edu	37	8	26484797	26484797	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001386.4	+1	validated	p.D203N	0.999	89	0%	126	40.5%	47	31.9%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Amidohydro_1,superfamily_Composite domain of metallo-dependent hydrolases,superfamily_Metallo-dependent hydrolases
EPHX2	2053	genome.wustl.edu	37	8	27361207	27361207	+	Silent	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001979.4	+1	reviewed	p.I91	0.780	42	0%	48	39.6%	1	0%	-	-	-	HMMPfam_Hydrolase,superfamily_SSF56784
PBK	55872	genome.wustl.edu	37	8	27680651	27680651	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018492.2	-1	reviewed	p.R75Q	0.868	137	0%	236	39%	1	0%	benign(0.001)	tolerated(0.59)	neutral(0.004)	superfamily_Kinase_like,HMMPfam_Pkinase
C8orf80	389643	genome.wustl.edu	37	8	27884561	27884561	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010906.1	-1	provisional	p.I721	0.990	56	0%	64	53.1%	0	-	-	-	-	NULL
KIF13B	23303	genome.wustl.edu	37	8	29006260	29006260	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015254.3	-1	validated	p.K549N	0.998	146	0%	234	44.9%	0	-	benign(0.018)	tolerated(0.39)	neutral(0.017)	NULL
NRG1	3084	genome.wustl.edu	37	8	32621621	32621621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013956.3	+1	reviewed	p.A547T	0.999	42	0%	58	53.4%	0	-	benign(0)	tolerated(0.7)	neutral(0.002)	HMMPfam_Neuregulin
UNC5D	137970	genome.wustl.edu	37	8	35631843	35631843	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080872.2	+1	validated	p.F835	1.000	158	0%	202	39.6%	0	-	-	-	-	NULL
IDO1	3620	genome.wustl.edu	37	8	39785539	39785539	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002164.4	+1	validated	p.I349	0.025	64	0%	78	42.3%	12	50%	-	-	-	HMMPfam_IDO
GINS4	84296	genome.wustl.edu	37	8	41397443	41397443	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032336.2	+1	validated	p.A135V	0.534	42	0%	61	50.8%	9	33.3%	benign(0)	tolerated(0.28)	neutral(0.032)	HMMPfam_Sld5
HOOK3	84376	genome.wustl.edu	37	8	42873529	42873529	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032410.3	+1	validated	p.E682G	1.000	39	0%	54	53.7%	5	0%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_HOOK
MCM4	4173	genome.wustl.edu	37	8	48875323	48875323	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005914.2	+1	reviewed	e5-1	1.000	211	0%	321	38.9%	0	-	-	-	-	-
OPRK1	4986	genome.wustl.edu	37	8	54142028	54142028	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000912.3	-1	validated	p.S324	1.000	62	0%	63	54%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
MTFR1	9650	genome.wustl.edu	37	8	66620182	66620182	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014637.3	+1	reviewed	p.S290I	1.000	90	0%	104	36.5%	3	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
CSPP1	79848	genome.wustl.edu	37	8	68007897	68007897	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077204.1	+1	validated	p.E329*	1.000	45	0%	61	49.2%	1	0%	-	-	-	NULL
C8orf34	116328	genome.wustl.edu	37	8	69633640	69633640	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052958.1	+1	predicted	p.E347K	0.997	393	0%	495	42.8%	0	-	benign(0.097)	tolerated(0.19)	neutral(0.057)	NULL
SULF1	23213	genome.wustl.edu	37	8	70517113	70517113	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128204.1	+1	validated	p.V441	0.999	49	0%	71	42.3%	23	0%	-	-	-	superfamily_Alkaline_phosphatase_core
TRPA1	8989	genome.wustl.edu	37	8	72948639	72948639	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007332.2	-1	reviewed	p.T813	0.668	75	0%	92	41.3%	0	-	-	-	-	HMMPfam_Ion_trans
JPH1	56704	genome.wustl.edu	37	8	75227326	75227326	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020647.2	-1	reviewed	p.K303N	1.000	96	0%	135	43.7%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_MORN,HMMSmart_SM00698,superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
ZFHX4	79776	genome.wustl.edu	37	8	77776581	77776581	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024721.4	+1	validated	p.S3499F	1.000	126	0%	166	51.8%	2	50%	probably_damaging(0.998)	-	-	NULL
SLC7A13	157724	genome.wustl.edu	37	8	87242487	87242487	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138817.2	-1	validated	p.I7T	0.786	24	0%	23	34.8%	0	-	benign(0.021)	deleterious(0)	neutral(0.446)	NULL
CPNE3	8895	genome.wustl.edu	37	8	87543409	87543409	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003909.3	+1	reviewed	p.R113	1.000	134	0%	172	50%	2	0%	-	-	-	HMMSmart_C2,superfamily_C2_CaLB
LRRC69	100130742	genome.wustl.edu	37	8	92147945	92147945	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001129890.1	+1	provisional	p.I210S	0.026	95	0%	122	49.2%	0	-	benign(0.019)	tolerated(0.5)	neutral(0.011)	HMMPfam_LRR_1,superfamily_L domain-like
TMEM67	91147	genome.wustl.edu	37	8	94815840	94815840	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153704.5	+1	reviewed	p.F750L	1.000	436	0%	634	41.8%	1	0%	possibly_damaging(0.932)	tolerated(0.22)	neutral(0.420)	HMMPfam_Meckelin
CCNE2	9134	genome.wustl.edu	37	8	95905111	95905111	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_057749.1	-1	reviewed	p.F84L	1.000	163	0%	237	45.1%	0	-	benign(0.001)	tolerated(0.73)	neutral(0.002)	NULL
C8orf47	203111	genome.wustl.edu	37	8	99102024	99102024	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173549.2	+1	validated	p.R260I	0.000	66	0%	68	48.5%	0	-	benign(0)	tolerated(0.1)	neutral(0.286)	NULL
ENSG00000228224	0	genome.wustl.edu	37	8	102381222	102381222	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000419462	+1	known	p.S29P	1.000	114	0%	151	41.1%	1	0%	-	-	-	NULL
UBR5	51366	genome.wustl.edu	37	8	103323706	103323706	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015902.4	-1	reviewed	p.R813*	1.000	74	1.4%	106	47.2%	0	-	-	-	-	NULL
SYBU	55638	genome.wustl.edu	37	8	110587169	110587169	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099744.1	-1	validated	p.S653L	1.000	47	0%	46	47.8%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CSMD3	114788	genome.wustl.edu	37	8	113318320	113318320	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198123.1	-1	validated	p.R2663*	0.999	111	0%	145	54.5%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD3	114788	genome.wustl.edu	37	8	113694850	113694850	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198123.1	-1	validated	p.E833A	1.000	96	0%	155	47.1%	0	-	unknown(0)	tolerated(0.47)	-	superfamily_Spermadhesin CUB domain,superfamily_Complement control module/SCR domain
CSMD3	114788	genome.wustl.edu	37	8	113871468	113871468	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198123.1	-1	validated	p.G554E	1.000	117	0%	165	48.5%	0	-	unknown(0)	tolerated(0.22)	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
DEPTOR	64798	genome.wustl.edu	37	8	121021281	121021281	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022783.2	+1	validated	p.A337V	1.000	132	0%	201	45.3%	65	46.1%	benign(0.208)	tolerated(0.21)	neutral(0.064)	superfamily_PDZ
RNF139	11236	genome.wustl.edu	37	8	125499376	125499376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007218.3	+1	reviewed	p.R496W	1.000	91	1.1%	113	37.2%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF572	137209	genome.wustl.edu	37	8	125989133	125989133	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152412.2	+1	validated	p.R208I	1.000	43	0%	49	44.9%	0	-	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
OC90	729330	genome.wustl.edu	37	8	133051289	133051289	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080399.2	-1	validated	p.S180Y	0.996	120	0%	147	44.9%	0	-	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	HMMPfam_Phospholip_A2_1,HMMSmart_SM00085,superfamily_Phospholipase A2 PLA2
TG	7038	genome.wustl.edu	37	8	134024252	134024252	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003235.4	+1	reviewed	p.F2123L	0.727	70	0%	73	43.8%	0	-	benign(0.178)	deleterious(0.04)	neutral(0.365)	NULL
WISP1	8840	genome.wustl.edu	37	8	134239875	134239875	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003882.2	+1	reviewed	p.C342	1.000	144	0%	125	48%	2	0%	-	-	-	HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot
FAM135B	51059	genome.wustl.edu	37	8	139144855	139144855	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015912.3	-1	validated	p.G1401E	1.000	99	0%	124	48.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SMARCA2	6595	genome.wustl.edu	37	9	2058342	2058342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003070.3	+1	reviewed	p.R467W	1.000	131	0%	144	51.4%	0	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMPfam_HSA,HMMSmart_SM00573
VLDLR	7436	genome.wustl.edu	37	9	2643728	2643728	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003383.3	+1	reviewed	p.S307	0.007	159	0%	176	41.5%	33	63.6%	-	-	-	HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module
CDC37L1	55664	genome.wustl.edu	37	9	4684942	4684942	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017913.2	+1	validated	p.A66	0.760	151	0%	260	45.8%	7	57.1%	-	-	-	NULL
RANBP6	26953	genome.wustl.edu	37	9	6013745	6013745	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012416.2	-1	validated	p.K621N	1.000	56	0%	76	51.3%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM-type_fold
MPDZ	8777	genome.wustl.edu	37	9	13162788	13162788	+	Silent	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000433359	-1	known	p.L25V	0.805	222	0%	311	49.8%	2	100%	-	-	-	NULL
KIAA1797	54914	genome.wustl.edu	37	9	20907219	20907219	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017794.3	+1	validated	p.R899Q	0.989	132	0%	180	44.4%	8	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM-type_fold
ACO1	48	genome.wustl.edu	37	9	32425975	32425975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002197.2	+1	reviewed	p.P443L	1.000	79	0%	111	55%	30	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aconitase,superfamily_Aconitase iron-sulfur domain,PatternScan_ACONITASE_1
SPINK4	27290	genome.wustl.edu	37	9	33245130	33245130	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014471.1	+1	provisional	p.K28Q	0.036	101	0%	95	37.9%	0	-	probably_damaging(0.972)	tolerated(0.08)	deleterious(0.714)	superfamily_SSF100895
ANKRD18B	441459	genome.wustl.edu	37	9	33548787	33548787	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001718334.2	+1	model	p.L733F	0.023	101	0%	153	45.1%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
C9orf131	138724	genome.wustl.edu	37	9	35043213	35043213	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203299.2	+1	validated	p.F196C	1.000	81	0%	120	47.5%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
ZCCHC7	84186	genome.wustl.edu	37	9	37305547	37305547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032226.2	+1	validated	p.R263C	0.983	189	0%	237	45.6%	9	55.5%	probably_damaging(0.995)	tolerated(0.05)	deleterious(0.803)	superfamily_Retrovirus zinc finger-like domains
LOC100289454	100289454	genome.wustl.edu	37	9	44067721	44067721	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342913.1	-1	model	p.D35N	0.456	61	0%	78	43.6%	0	-	-	-	-	NULL
MIR204	406987	genome.wustl.edu	37	9	73424988	73424988	+	RNA	SNP	A	A	C	rs112971695		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000385200	-1	known	NULL	1.000	73	0%	92	39.1%	0	-	-	-	-	-
TRPM3	80036	genome.wustl.edu	37	9	73442876	73442876	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007471.2	-1	reviewed	p.S287N	1.000	186	0%	266	51.5%	0	-	benign(0.004)	tolerated(1)	-	NULL
FAM75D1	389763	genome.wustl.edu	37	9	84604702	84604702	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001670.2	+1	validated	p.R66G	0.004	211	0.5%	278	46.8%	0	-	probably_damaging(0.958)	deleterious(0.03)	deleterious(0.766)	NULL
CTSL1	1514	genome.wustl.edu	37	9	90343652	90343652	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001912.4	+1	reviewed	p.M183I	1.000	179	0%	245	41.6%	12	16.6%	benign(0.126)	deleterious(0.01)	neutral(0.416)	HMMPfam_Peptidase_C1,HMMSmart_Pept_C1,superfamily_SSF54001
S1PR3	1903	genome.wustl.edu	37	9	91616326	91616326	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005226.2	+1	reviewed	p.H71N	1.000	14	0%	17	41.2%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
PTPDC1	138639	genome.wustl.edu	37	9	96860687	96860687	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152422.3	+1	reviewed	p.F611L	0.003	61	0%	88	42%	1	0%	benign(0.008)	deleterious(0.02)	neutral(0.383)	NULL
ZNF782	158431	genome.wustl.edu	37	9	99581972	99581972	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001662.1	-1	provisional	p.L111F	0.110	125	0%	141	39%	0	-	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	NULL
TDRD7	23424	genome.wustl.edu	37	9	100235779	100235779	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014290.2	+1	validated	p.D650	0.863	84	0%	117	46.2%	5	20%	-	-	-	HMMPfam_TUDOR
TBC1D2	55357	genome.wustl.edu	37	9	100973032	100973032	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018421.3	-1	validated	p.E527K	0.043	15	0%	24	54.2%	11	27.2%	benign(0)	tolerated(0.79)	neutral(0.001)	NULL
GALNT12	79695	genome.wustl.edu	37	9	101608364	101608364	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024642.3	+1	validated	p.E522K	0.000	50	0%	85	41.2%	12	16.6%	benign(0)	tolerated(0.42)	neutral(0.014)	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,superfamily_Ricin B-like lectins
GRIN3A	116443	genome.wustl.edu	37	9	104390670	104390670	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133445.2	-1	reviewed	p.S789F	1.000	137	0%	182	45.1%	0	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_Lig_chan,HMMSmart_PBPe,superfamily_SSF53850
SMC2	10592	genome.wustl.edu	37	9	106864248	106864248	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042550.1	+1	validated	p.S215L	1.000	149	0%	182	43.4%	0	-	benign(0.164)	deleterious(0.02)	neutral(0.398)	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
OR13C4	138804	genome.wustl.edu	37	9	107288680	107288680	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001919.1	-1	provisional	p.D271Y	0.000	114	0%	116	39.7%	0	-	possibly_damaging(0.939)	deleterious(0.01)	deleterious(0.790)	HMMPfam_7tm_1,superfamily_SSF81321
NIPSNAP3A	25934	genome.wustl.edu	37	9	107513294	107513294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015469.1	+1	provisional	p.R40C	1.000	199	0%	241	39.8%	0	-	probably_damaging(0.96)	tolerated(0.08)	deleterious(0.703)	HMMPfam_NIPSNAP
ABCA1	19	genome.wustl.edu	37	9	107555525	107555525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005502.2	-1	reviewed	p.A1855T	1.000	95	0%	102	47.1%	0	-	benign(0.344)	tolerated(0.1)	neutral(0.395)	NULL
ZNF483	158399	genome.wustl.edu	37	9	114304249	114304249	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133464.2	+1	validated	p.L345R	0.975	96	0%	99	48.5%	0	-	probably_damaging(0.991)	tolerated(0.12)	deleterious(0.705)	NULL
C9orf43	257169	genome.wustl.edu	37	9	116185621	116185621	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152786.1	+1	predicted	p.L167M	0.000	100	0%	111	50.5%	1	0%	possibly_damaging(0.926)	deleterious(0)	deleterious(0.819)	NULL
AKNA	80709	genome.wustl.edu	37	9	117103986	117103986	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000320310	-1	known	p.R309Q	0.000	57	0%	65	47.7%	26	42.3%	unknown(0)	tolerated(0.33)	-	NULL
ASTN2	23245	genome.wustl.edu	37	9	119583045	119583045	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198187.3	-1	reviewed	p.K686	1.000	68	0%	70	45.7%	6	66.6%	-	-	-	superfamily_EGF/Laminin
CDK5RAP2	55755	genome.wustl.edu	37	9	123177407	123177407	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018249.4	-1	reviewed	p.R1403Q	1.000	175	0%	210	40%	6	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CNTRL	11064	genome.wustl.edu	37	9	123904422	123904422	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007018.4	+1	reviewed	p.E915D	1.000	60	0%	129	50.4%	0	-	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	NULL
SH2D3C	10044	genome.wustl.edu	37	9	130501088	130501088	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170600.2	-1	validated	p.F840	1.000	22	0%	30	40%	16	0%	-	-	-	HMMSmart_SM00147
SET	6418	genome.wustl.edu	37	9	131453465	131453465	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122821.1	+1	validated	p.E43D	1.000	133	0%	162	45.1%	76	55.2%	possibly_damaging(0.694)	tolerated(0.12)	deleterious(0.510)	HMMPfam_NAP
PRRC2B	84726	genome.wustl.edu	37	9	134350648	134350648	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013318.3	+1	validated	p.M1044I	0.025	34	0%	30	50%	3	33.3%	benign(0)	tolerated(0.13)	neutral(0.253)	NULL
PRRC2B	84726	genome.wustl.edu	37	9	134357826	134357826	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000451855	+1	known	p.D417N	0.557	39	0%	52	51.9%	13	46.1%	-	-	-	NULL
SETX	23064	genome.wustl.edu	37	9	135203500	135203500	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015046.5	-1	reviewed	p.R1162I	0.957	131	0%	135	44.4%	0	-	benign(0.312)	deleterious(0)	deleterious(0.542)	NULL
SNORD36C	26813	genome.wustl.edu	37	9	136217719	136217719	+	RNA	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_000016.1	+1	validated	NULL	1.000	46	0%	33	48.5%	2	50%	-	-	-	-
ADAMTS13	11093	genome.wustl.edu	37	9	136324231	136324231	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139025.3	+1	reviewed	p.Y1405H	0.981	24	0%	19	47.4%	18	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Spermadhesin CUB domain
INPP5E	56623	genome.wustl.edu	37	9	139324228	139324228	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019892.3	-1	reviewed	p.E612*	0.960	93	0%	99	39.4%	5	20%	-	-	-	superfamily_DNase I-like
SEC16A	9919	genome.wustl.edu	37	9	139368836	139368836	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014866.1	-1	validated	p.F1078L	0.000	14	0%	18	44.4%	14	28.5%	possibly_damaging(0.737)	tolerated(0.26)	neutral(0.303)	NULL
NELF	26012	genome.wustl.edu	37	9	140351895	140351895	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130969.1	-1	reviewed	p.K198E	1.000	11	0.000	8	0.625	275	54.5%	benign(0.315)	deleterious(0.01)	deleterious(0.504)	NULL
CACNA1B	774	genome.wustl.edu	37	9	141016070	141016070	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000718.2	+1	validated	p.F2213	0.042	46	0%	38	47.4%	0	-	-	-	-	NULL
ZMYND11	10771	genome.wustl.edu	37	10	288047	288047	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006624.4	+1	reviewed	p.V266	0.993	182	0%	225	43.6%	16	68.7%	-	-	-	HMMPfam_PWWP,HMMSmart_PWWP,superfamily_SSF63748
ITIH2	3698	genome.wustl.edu	37	10	7762890	7762890	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002216.2	+1	validated	p.F234	0.989	88	0%	110	41.8%	0	-	-	-	-	NULL
OPTN	10133	genome.wustl.edu	37	10	13160971	13160971	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008211.1	+1	reviewed	p.L237P	1.000	88	0%	143	49.7%	5	60%	probably_damaging(0.995)	tolerated(0.07)	deleterious(0.776)	NULL
ITGA8	8516	genome.wustl.edu	37	10	15634241	15634241	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003638.1	-1	provisional	p.F758	1.000	231	0%	285	44.6%	0	-	-	-	-	HMMPfam_Integrin_alpha2,superfamily_SSF69179
KIAA1217	56243	genome.wustl.edu	37	10	24832671	24832671	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019590.3	+1	validated	p.S1491Y	0.005	67	0%	82	63.4%	15	60%	possibly_damaging(0.509)	tolerated(0.05)	deleterious(0.516)	NULL
PDSS1	23590	genome.wustl.edu	37	10	27024210	27024210	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014317.3	+1	reviewed	p.I291	0.296	234	0%	352	44.9%	11	27.2%	-	-	-	HMMPfam_polyprenyl_synt,superfamily_Terpenoid synthases
ANKRD26	22852	genome.wustl.edu	37	10	27335393	27335393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014915.2	-1	validated	p.S625L	0.000	231	0%	371	44.7%	0	-	possibly_damaging(0.564)	tolerated(0.21)	neutral(0.236)	NULL
ARMC4	55130	genome.wustl.edu	37	10	28229609	28229609	+	Silent	SNP	C	C	T	rs189617150	by1000genomes	TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018076.2	-1	validated	p.T623	0.000	58	0%	71	50.7%	1	0%	-	-	-	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
ARMC4	55130	genome.wustl.edu	37	10	28274124	28274124	+	Silent	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018076.2	-1	validated	p.I133	0.210	93	0%	121	48.8%	0	-	-	-	-	NULL
SVIL	6840	genome.wustl.edu	37	10	29788177	29788177	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021738.2	-1	reviewed	p.R1178*	0.003	91	0%	104	38.5%	6	16.6%	-	-	-	NULL
MTPAP	55149	genome.wustl.edu	37	10	30630462	30630462	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018109.3	-1	validated	p.N89H	1.000	152	0%	184	46.7%	1	100%	benign(0.163)	deleterious(0.02)	neutral(0.398)	NULL
ZNF438	220929	genome.wustl.edu	37	10	31137752	31137752	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143766.1	-1	validated	p.T528A	0.987	91	0%	124	43.5%	23	43.4%	benign(0.228)	deleterious(0)	neutral(0.467)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PARD3	56288	genome.wustl.edu	37	10	34626240	34626240	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019619.3	-1	validated	p.F844	1.000	233	0%	266	50.4%	3	33.3%	-	-	-	NULL
HNRNPF	3185	genome.wustl.edu	37	10	43882987	43882987	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098204.1	-1	reviewed	p.R116*	1.000	109	0%	145	12.4%	475	1.2%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
ZNF485	220992	genome.wustl.edu	37	10	44112612	44112612	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145312.3	+1	validated	p.R374I	0.999	105	0%	141	46.8%	0	-	benign(0.195)	tolerated(0.05)	neutral(0.364)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
FAM21C	253725	genome.wustl.edu	37	10	46280320	46280320	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015262.2	+1	validated	p.L885I	1.000	551	0.2%	725	30.8%	0	-	possibly_damaging(0.932)	deleterious(0)	deleterious(0.823)	NULL
PPYR1	5540	genome.wustl.edu	37	10	47086873	47086873	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005972.4	+1	validated	p.F30L	0.985	151	0%	197	22.3%	0	-	benign(0.001)	tolerated(0.34)	neutral(0.023)	superfamily_Family A G protein-coupled receptor-like
FRMPD2	143162	genome.wustl.edu	37	10	49393669	49393669	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001018071.3	-1	reviewed	p.R762S	0.000	176	0%	209	38.8%	0	-	probably_damaging(0.959)	deleterious(0.04)	deleterious(0.752)	NULL
ERCC6	2074	genome.wustl.edu	37	10	50678344	50678344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000124.2	-1	reviewed	p.R1221Q	0.998	345	0%	464	46.8%	1	100%	probably_damaging(0.992)	tolerated(0.06)	deleterious(0.770)	NULL
ANK3	288	genome.wustl.edu	37	10	61832027	61832027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020987.2	-1	reviewed	p.S2871L	0.997	72	0%	94	50%	0	-	benign(0.195)	-	-	NULL
EIF4EBP2	1979	genome.wustl.edu	37	10	72179676	72179676	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004096.4	+1	reviewed	p.R51Q	1.000	132	0%	166	36.7%	36	50%	benign(0.116)	deleterious(0)	neutral(0.454)	HMMPfam_eIF_4EBP
PRF1	5551	genome.wustl.edu	37	10	72358087	72358087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083116.1	-1	reviewed	p.R464W	0.000	41	0%	33	36.4%	0	-	benign(0.045)	deleterious(0.02)	neutral(0.386)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
C10orf105	414152	genome.wustl.edu	37	10	73475974	73475974	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000441508	-1	known	p.A41T	0.905	38	0%	34	38.2%	0	-	probably_damaging(0.965)	-	-	NULL
PLAU	5328	genome.wustl.edu	37	10	75672052	75672052	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002658.3	+1	reviewed	p.K55	1.000	61	0%	83	44.6%	7	14.2%	-	-	-	PatternScan_EGF_1,superfamily_Kringle-like
FAM213A	84293	genome.wustl.edu	37	10	82187096	82187096	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032333.4	+1	validated	p.F140L	0.986	102	0%	189	41.8%	24	62.5%	possibly_damaging(0.89)	deleterious(0)	deleterious(0.794)	NULL
PTEN	5728	genome.wustl.edu	37	10	89692775	89692775	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.Q87*	1.000	249	0.4%	285	41.8%	5	60%	-	-	-	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89692905	89692905	+	Missense_Mutation	SNP	G	G	A	rs121913292		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.R130Q	1.000	180	0%	245	47.3%	5	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89692947	89692947	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.K144T	1.000	141	0%	168	43.5%	4	50%	benign(0.002)	tolerated(0.4)	neutral(0.016)	HMMPfam_DSPc,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
LIPF	8513	genome.wustl.edu	37	10	90429648	90429648	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004190.2	+1	reviewed	p.K159N	0.867	142	0%	206	41.7%	0	-	benign(0.001)	tolerated(0.94)	-	HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases
LIPA	3988	genome.wustl.edu	37	10	91007373	91007373	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000235.2	-1	reviewed	p.C11	0.002	180	0%	271	47.6%	0	-	-	-	-	NULL
IFIT2	3433	genome.wustl.edu	37	10	91066223	91066223	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001547.4	+1	validated	p.K170N	0.013	34	0%	60	48.3%	0	-	probably_damaging(0.999)	tolerated(0.36)	deleterious(0.510)	HMMPfam_TPR_1,superfamily_SSF48452
IFIT1B	439996	genome.wustl.edu	37	10	91144053	91144053	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010987.2	+1	validated	p.K328T	0.034	45	0%	37	37.8%	0	-	benign(0.05)	deleterious(0.03)	neutral(0.367)	superfamily_TPR-like
CYP26A1	1592	genome.wustl.edu	37	10	94834926	94834926	+	Silent	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000783.3	+1	reviewed	p.L242	1.000	12	0%	14	50%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
CYP26A1	1592	genome.wustl.edu	37	10	94836395	94836395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000783.3	+1	reviewed	p.R365Q	0.994	149	0%	240	44.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_p450,superfamily_Cytochrome_P450
CYP26A1	1592	genome.wustl.edu	37	10	94836903	94836903	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000783.3	+1	reviewed	p.E446*	1.000	60	0%	77	61%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
MYOF	26509	genome.wustl.edu	37	10	95161286	95161286	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013451.3	-1	reviewed	p.R336C	0.001	119	0%	149	38.3%	0	-	benign(0.019)	tolerated(0.06)	neutral(0.324)	HMMPfam_FerI
PLCE1	51196	genome.wustl.edu	37	10	96068341	96068341	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016341.3	+1	reviewed	p.Y1963C	1.000	101	0%	127	42.5%	3	33.3%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
HELLS	3070	genome.wustl.edu	37	10	96322454	96322454	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018063.3	+1	reviewed	p.N114H	0.988	174	0%	213	43.7%	0	-	possibly_damaging(0.654)	tolerated(0.09)	deleterious(0.526)	NULL
ABCC2	1244	genome.wustl.edu	37	10	101605438	101605438	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000392.3	+1	reviewed	p.R1349G	1.000	96	0%	122	49.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
SEC31B	25956	genome.wustl.edu	37	10	102249808	102249808	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015490.3	-1	reviewed	p.C974	0.001	45	0%	40	40%	1	100%	-	-	-	NULL
NFKB2	4791	genome.wustl.edu	37	10	104157319	104157319	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077494.1	+1	validated	p.E180*	1.000	45	0%	65	35.4%	5	0%	-	-	-	superfamily_p53-like transcription factors,HMMPfam_RHD
MIR1307	100302174	genome.wustl.edu	37	10	105154065	105154065	+	RNA	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000408840	-1	known	NULL	0.138	96	0%	103	50.5%	4	100%	-	-	-	-
DCLRE1A	9937	genome.wustl.edu	37	10	115596905	115596905	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014881.3	-1	provisional	p.R960*	1.000	295	0%	443	47.2%	2	50%	-	-	-	HMMPfam_DRMBL
TDRD1	56165	genome.wustl.edu	37	10	115962020	115962020	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198795.1	+1	reviewed	p.S220*	0.980	319	0%	477	44.7%	0	-	-	-	-	NULL
GFRA1	2674	genome.wustl.edu	37	10	117884785	117884785	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005264.4	-1	reviewed	p.E239D	1.000	22	0%	45	51.1%	5	0%	benign(0.001)	tolerated(0.25)	neutral(0.037)	superfamily_GDNF receptor-like (Pfam 02351)
GFRA1	2674	genome.wustl.edu	37	10	118029035	118029035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005264.4	-1	reviewed	p.R133Q	1.000	195	0%	317	45.1%	8	100%	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	NULL
KIAA1598	57698	genome.wustl.edu	37	10	118671344	118671344	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127211.1	-1	validated	p.S439L	0.918	161	0.6%	219	41.6%	0	-	benign(0)	tolerated(0.3)	neutral(0.029)	NULL
KCNK18	338567	genome.wustl.edu	37	10	118969585	118969585	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181840.1	+1	provisional	p.F310	0.293	295	0%	401	45.9%	0	-	-	-	-	HMMPfam_Ion_trans_2,superfamily_SSF81324
SEC23IP	11196	genome.wustl.edu	37	10	121658165	121658165	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007190.2	+1	reviewed	p.S130	0.000	81	0%	123	39%	8	25%	-	-	-	NULL
WDR11	55717	genome.wustl.edu	37	10	122630798	122630798	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018117.11	+1	reviewed	p.R471C	0.990	88	0%	79	55.7%	24	58.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_WD40_like
TACC2	10579	genome.wustl.edu	37	10	123843045	123843045	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206862.2	+1	reviewed	p.A344T	0.000	17	0.000	9	0.556	0	-	benign(0)	deleterious(0.02)	neutral(0.383)	NULL
PLEKHA1	59338	genome.wustl.edu	37	10	124189401	124189401	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001974.1	+1	validated	p.D388Y	0.169	67	0%	112	19.6%	19	5.2%	possibly_damaging(0.805)	deleterious(0.04)	deleterious(0.652)	NULL
C10orf90	118611	genome.wustl.edu	37	10	128153290	128153290	+	Silent	SNP	A	A	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004298.2	-1	validated	p.V503	0.002	44	0%	49	40.8%	0	-	-	-	-	NULL
DOCK1	1793	genome.wustl.edu	37	10	128908585	128908585	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000398025	+1	known	p.E843K	1.000	107	0%	126	47.6%	36	38.8%	benign(0.001)	tolerated(0.31)	neutral(0.027)	NULL
MKI67	4288	genome.wustl.edu	37	10	129899886	129899886	+	Missense_Mutation	SNP	C	C	A	rs192859477	by1000genomes	TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002417.4	-1	reviewed	p.R3114I	0.007	191	0%	274	50.4%	2	50%	possibly_damaging(0.85)	deleterious(0.02)	deleterious(0.710)	NULL
TCERG1L	256536	genome.wustl.edu	37	10	133058637	133058637	+	Silent	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174937.3	-1	validated	p.A247	0.262	24	0%	14	57.1%	0	-	-	-	-	NULL
PAOX	196743	genome.wustl.edu	37	10	135197561	135197561	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152911.2	+1	validated	p.K322N	0.995	53	1.9%	93	50.5%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain,superfamily_FAD-linked reductases C-terminal domain
MUC2	4583	genome.wustl.edu	37	11	1102462	1102462	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002457.2	+1	reviewed	p.E2612K	0.011	49	0%	38	34.2%	0	-	unknown(0)	-	-	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1
MUC5B	727897	genome.wustl.edu	37	11	1264527	1264527	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002458.1	+1	validated	p.T2142	0.003	329	0%	311	42.8%	137	16%	-	-	-	NULL
LOC338651	338651	genome.wustl.edu	37	11	1618876	1618876	+	RNA	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_021489.1	+1	validated	NULL	0.003	37	0%	27	48.1%	3	66.6%	-	-	-	-
KRTAP5-5	439915	genome.wustl.edu	37	11	1651699	1651699	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001480.2	+1	validated	p.S210L	0.000	71	0%	57	36.8%	0	-	unknown(0)	tolerated(0.27)	-	NULL
OR51G1	79324	genome.wustl.edu	37	11	4945476	4945476	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005237.1	-1	provisional	p.P32T	0.949	60	1.7%	68	39.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SSF81321
OR52D1	390066	genome.wustl.edu	37	11	5510013	5510013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005163.2	+1	validated	p.A26V	0.000	117	0%	146	58.2%	0	-	benign(0)	tolerated(0.74)	neutral(0.002)	superfamily_Family A G protein-coupled receptor-like
OR56A4	120793	genome.wustl.edu	37	11	6023301	6023301	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005179.2	-1	provisional	p.N360H	0.041	176	0%	231	52.4%	0	-	benign(0.008)	tolerated(0.07)	neutral(0.319)	superfamily_SSF81321
TPP1	1200	genome.wustl.edu	37	11	6638988	6638988	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000391.3	-1	reviewed	p.E83D	1.000	125	0%	136	36%	35	28.5%	-	-	-	superfamily_Protease propeptides/inhibitors,HMMPfam_Pro-kuma_activ
OLFML1	283298	genome.wustl.edu	37	11	7509565	7509565	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198474.3	+1	validated	p.E113K	0.566	75	0%	79	49.4%	1	0%	possibly_damaging(0.946)	tolerated(0.1)	deleterious(0.676)	NULL
USP47	55031	genome.wustl.edu	37	11	11941986	11941986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017944.3	+1	validated	p.R320Q	1.000	219	0%	274	46.4%	3	33.3%	possibly_damaging(0.791)	deleterious(0.02)	deleterious(0.679)	HMMPfam_UCH,superfamily_Cysteine proteinases
SPON1	10418	genome.wustl.edu	37	11	14284295	14284295	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006108.2	+1	validated	p.R678Q	0.282	55	0%	49	46.9%	15	6.6%	unknown(0)	-	-	NULL
PIK3C2A	5286	genome.wustl.edu	37	11	17190949	17190949	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002645.2	-1	validated	p.T114A	0.984	124	0%	165	42.4%	2	100%	benign(0)	tolerated(0.32)	neutral(0.024)	NULL
TPH1	7166	genome.wustl.edu	37	11	18042681	18042681	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004179.2	-1	reviewed	p.G398R	1.000	214	0%	327	47.4%	38	47.3%	benign(0.404)	tolerated(0.21)	neutral(0.174)	HMMPfam_Biopterin_H,superfamily_Aromatic aminoacid monoxygenases catalytic and oligomerization domains
MRGPRX4	117196	genome.wustl.edu	37	11	18195162	18195162	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_054032.3	+1	validated	p.R120H	1.000	149	0%	235	49.4%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
DCDC1	341019	genome.wustl.edu	37	11	31312208	31312208	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181807.2	-1	validated	p.E316K	1.000	210	0%	241	42.3%	0	-	possibly_damaging(0.792)	tolerated(0.08)	deleterious(0.597)	superfamily_SSF89837
IMMP1L	196294	genome.wustl.edu	37	11	31455020	31455020	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144981.1	-1	provisional	p.R140Q	1.000	144	0%	144	36.8%	4	50%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_Pept_S24_S26_C
RCN1	5954	genome.wustl.edu	37	11	32118836	32118836	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002901.2	+1	reviewed	p.K134T	0.990	136	0%	157	44.6%	26	65.3%	benign(0.049)	tolerated(0.56)	neutral(0.009)	HMMSmart_EFh,PatternScan_EF_HAND_1,superfamily_SSF47473
QSER1	79832	genome.wustl.edu	37	11	32954371	32954371	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001076786.1	+1	provisional	p.Y394D	1.000	71	0%	101	48.5%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
SLC1A2	6506	genome.wustl.edu	37	11	35308434	35308434	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004171.3	-1	reviewed	p.T386A	1.000	110	0%	159	39%	0	-	probably_damaging(1)	tolerated(0.21)	deleterious(0.544)	HMMPfam_SDF
EXT2	2132	genome.wustl.edu	37	11	44257894	44257894	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000401.3	+1	reviewed	p.L676I	1.000	80	0%	125	45.6%	112	45.5%	possibly_damaging(0.614)	tolerated(0.06)	deleterious(0.535)	HMMPfam_Glyco_transf_64,superfamily_Nucleotide-diphospho-sugar transferases
TSPAN18	90139	genome.wustl.edu	37	11	44940779	44940779	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130783.4	+1	validated	p.F116L	1.000	116	0%	122	46.7%	1	0%	benign(0)	tolerated(0.5)	neutral(0.010)	superfamily_Tetraspanin,HMMPfam_Tetraspannin
CKAP5	9793	genome.wustl.edu	37	11	46785056	46785056	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008938.1	-1	validated	p.N1221S	1.000	128	0%	165	44.2%	7	42.8%	benign(0.122)	deleterious(0.01)	neutral(0.416)	superfamily_ARM repeat
LRP4	4038	genome.wustl.edu	37	11	46900811	46900811	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002334.3	-1	reviewed	p.R957H	1.000	27	0%	28	64.3%	43	46.5%	benign(0.159)	tolerated(0.22)	neutral(0.056)	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
DDB2	1643	genome.wustl.edu	37	11	47256905	47256905	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000107.2	+1	reviewed	p.C322F	0.016	37	0%	49	42.9%	126	45.2%	benign(0.04)	tolerated(0.06)	neutral(0.325)	superfamily_WD40 repeat-like
PTPRJ	5795	genome.wustl.edu	37	11	48181596	48181596	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002843.3	+1	reviewed	p.K1185E	1.000	69	0%	98	45.9%	8	37.5%	benign(0.397)	tolerated(0.54)	neutral(0.135)	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
OR5AS1	219447	genome.wustl.edu	37	11	55798814	55798814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001921.1	+1	provisional	p.R307K	0.001	104	0%	128	45.3%	0	-	benign(0)	tolerated(1)	-	superfamily_SSF81321
OR9G4	283189	genome.wustl.edu	37	11	56510348	56510348	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005284.1	-1	provisional	p.E314*	0.785	295	0%	474	43.9%	0	-	-	-	-	superfamily_SSF81321
OR5AK3P	81228	genome.wustl.edu	37	11	56738807	56738807	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000326876	+1	known	p.R95W	0.000	64	0%	85	48.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
SLC43A3	29015	genome.wustl.edu	37	11	57193520	57193520	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014096.2	-1	validated	p.Y42*	1.000	41	0%	40	45%	11	18.1%	-	-	-	NULL
MED19	219541	genome.wustl.edu	37	11	57472676	57472676	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153450.1	-1	provisional	p.T81	1.000	77	0%	116	39.7%	25	32%	-	-	-	HMMPfam_Med19
OR10W1	81341	genome.wustl.edu	37	11	58034737	58034737	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207374.3	-1	validated	p.I198	0.001	56	0%	76	34.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5A1	219982	genome.wustl.edu	37	11	59210965	59210965	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004728.1	+1	provisional	p.V108	0.000	109	0%	133	42.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
MS4A14	84689	genome.wustl.edu	37	11	60184235	60184235	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032597.3	+1	validated	p.K598N	0.000	52	0%	73	39.7%	0	-	benign(0.053)	tolerated(1)	neutral(0.004)	NULL
MS4A14	84689	genome.wustl.edu	37	11	60184283	60184283	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032597.3	+1	validated	p.K614N	0.001	49	0%	82	36.6%	0	-	benign(0.224)	tolerated(0.42)	neutral(0.036)	NULL
AHNAK	79026	genome.wustl.edu	37	11	62287257	62287257	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001620.1	-1	validated	p.L4878V	0.002	99	0%	142	42.3%	2	0%	benign(0.196)	tolerated(0.29)	neutral(0.048)	NULL
STX5	6811	genome.wustl.edu	37	11	62575006	62575006	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003164.3	-1	validated	p.L335F	1.000	179	0.6%	231	51.5%	100	53%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NRXN2	9379	genome.wustl.edu	37	11	64402838	64402838	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015080.2	-1	reviewed	p.R1164C	1.000	10	0%	17	47.1%	11	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases
NRXN2	9379	genome.wustl.edu	37	11	64453131	64453131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015080.2	-1	reviewed	p.R380Q	1.000	47	2.1%	51	62.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
CLPB	81570	genome.wustl.edu	37	11	72114073	72114073	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030813.3	-1	provisional	p.V160A	1.000	82	0%	101	49.5%	7	42.8%	possibly_damaging(0.695)	tolerated(0.37)	neutral(0.268)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
PGM2L1	283209	genome.wustl.edu	37	11	74056590	74056590	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173582.3	-1	validated	p.N381S	0.673	260	0%	329	44.4%	1	100%	benign(0.003)	tolerated(0.11)	neutral(0.272)	superfamily_Phosphoglucomutase first 3 domains
XRRA1	143570	genome.wustl.edu	37	11	74651894	74651894	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182969.1	-1	validated	p.D10E	0.995	42	0%	50	38%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
RSF1	51773	genome.wustl.edu	37	11	77451804	77451804	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016578.3	-1	validated	p.D184Y	1.000	136	0%	208	40.4%	8	12.5%	possibly_damaging(0.761)	tolerated(0.11)	deleterious(0.553)	NULL
ODZ4	26011	genome.wustl.edu	37	11	78369199	78369199	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098816.2	-1	validated	p.D2738	0.042	62	0%	46	52.2%	4	25%	-	-	-	NULL
DLG2	1740	genome.wustl.edu	37	11	84245768	84245768	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142699.1	-1	reviewed	p.R122*	1.000	134	0%	187	35.3%	0	-	-	-	-	HMMPfam_MAGUK_N_PEST
CCDC83	220047	genome.wustl.edu	37	11	85630543	85630543	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173556.3	+1	provisional	p.S442Y	0.985	109	0%	148	47.3%	0	-	possibly_damaging(0.946)	deleterious(0.01)	deleterious(0.796)	NULL
FAT3	120114	genome.wustl.edu	37	11	92534954	92534954	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008781.2	+1	validated	p.A2925	0.994	33	0%	31	54.8%	0	-	-	-	-	superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
CCDC67	159989	genome.wustl.edu	37	11	93129471	93129471	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181645.3	+1	validated	p.L436V	0.998	133	0%	179	41.3%	0	-	benign(0.01)	tolerated(0.26)	neutral(0.035)	NULL
MED17	9440	genome.wustl.edu	37	11	93545171	93545171	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004268.4	+1	reviewed	p.R633*	1.000	227	0%	341	41.3%	5	0%	-	-	-	HMMPfam_DUF2364
HEPHL1	341208	genome.wustl.edu	37	11	93778987	93778987	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098672.1	+1	validated	p.E107K	1.000	107	0%	149	41.6%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	superfamily_Cupredoxin,HMMPfam_Cu-oxidase_3
CCDC82	79780	genome.wustl.edu	37	11	96116456	96116456	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024725.3	-1	validated	p.K323T	1.000	317	0%	439	45.1%	0	-	benign(0.344)	tolerated(0.08)	neutral(0.408)	NULL
MMP27	64066	genome.wustl.edu	37	11	102567552	102567552	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022122.2	-1	reviewed	p.L212I	1.000	155	0%	201	44.8%	0	-	benign(0.319)	tolerated(0.07)	neutral(0.418)	"HMMPfam_Peptidase_M10,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain"
MMP27	64066	genome.wustl.edu	37	11	102576439	102576439	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022122.2	-1	reviewed	p.R3C	0.080	121	0%	135	34.1%	0	-	benign(0.004)	tolerated(0.2)	neutral(0.049)	NULL
DYNC2H1	79659	genome.wustl.edu	37	11	103029661	103029661	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080463.1	+1	reviewed	p.R1428I	1.000	112	0%	133	47.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DHC_N2
DYNC2H1	79659	genome.wustl.edu	37	11	103151095	103151095	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080463.1	+1	reviewed	p.A3579T	1.000	259	0%	205	63.4%	1	100%	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	NULL
DYNC2H1	79659	genome.wustl.edu	37	11	103194654	103194654	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080463.1	+1	reviewed	p.K3999T	1.000	137	0%	148	45.9%	6	66.6%	benign(0)	tolerated(0.69)	neutral(0.002)	HMMPfam_Dynein_heavy
CASP4	837	genome.wustl.edu	37	11	104825573	104825573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001225.3	-1	reviewed	p.R55W	0.000	328	0%	381	44.6%	4	25%	benign(0.245)	tolerated(0.13)	neutral(0.278)	HMMPfam_CARD,HMMSmart_SM00114,superfamily_DEATH domain
CASP5	838	genome.wustl.edu	37	11	104866559	104866559	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136112.1	-1	reviewed	p.S419*	0.821	254	0%	326	42%	0	-	-	-	-	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like
ATM	472	genome.wustl.edu	37	11	108205739	108205739	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000051.3	+1	reviewed	p.S2685*	1.000	172	0.6%	207	42.5%	1	0%	-	-	-	superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat
RDX	5962	genome.wustl.edu	37	11	110118502	110118502	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002906.3	-1	reviewed	p.R339I	1.000	548	0%	777	43.4%	1	0%	benign(0.093)	deleterious(0.02)	neutral(0.390)	HMMPfam_ERM,superfamily_PH domain-like
C11orf88	399949	genome.wustl.edu	37	11	111404492	111404492	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207430.2	+1	validated	p.L148I	1.000	131	0%	177	37.9%	2	100%	benign(0.024)	tolerated(0.54)	neutral(0.009)	NULL
ENSG00000214264	0	genome.wustl.edu	37	11	112053875	112053875	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000397969	+1	known	p.E139D	1.000	169	0%	197	38.6%	0	-	-	-	-	HMMPfam_Pentapeptide
C11orf34	349633	genome.wustl.edu	37	11	112119612	112119612	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145024.1	-1	provisional	p.L178	0.010	100	0%	141	39.7%	0	-	-	-	-	NULL
NNMT	4837	genome.wustl.edu	37	11	114182997	114182997	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006169.2	+1	reviewed	p.A198V	0.083	37	0%	38	47.4%	384	34.6%	benign(0.009)	deleterious(0)	neutral(0.445)	HMMPfam_NNMT_PNMT_TEMT,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
DSCAML1	57453	genome.wustl.edu	37	11	117306492	117306492	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020693.2	-1	provisional	p.A1642S	1.000	63	0%	84	39.3%	0	-	benign(0.001)	tolerated(0.63)	neutral(0.004)	NULL
TRIM29	23650	genome.wustl.edu	37	11	119998185	119998185	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012101.3	-1	reviewed	p.A331	0.106	65	0%	64	48.4%	1	0%	-	-	-	NULL
MIR100	406892	genome.wustl.edu	37	11	122022940	122022940	+	RNA	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000385259	-1	known	NULL	0.380	140	0%	133	42.9%	0	-	-	-	-	-
OR10S1	219873	genome.wustl.edu	37	11	123847934	123847934	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004474.1	-1	provisional	p.C155	0.001	68	0%	51	45.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PANX3	116337	genome.wustl.edu	37	11	124489504	124489504	+	Silent	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052959.2	+1	reviewed	p.V284	0.505	85	0%	151	41.1%	0	-	-	-	-	NULL
SRPR	6734	genome.wustl.edu	37	11	126134095	126134095	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003139.3	-1	reviewed	p.I593	1.000	43	0%	55	45.5%	317	44.7%	-	-	-	HMMPfam_SRP54,superfamily_SSF52540
ENSG00000118976	0	genome.wustl.edu	37	12	3949559	3949559	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000237841	+1	known	p.K364N	0.001	309	0%	317	45.7%	0	-	-	-	-	NULL
GDF3	9573	genome.wustl.edu	37	12	7842975	7842975	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020634.1	-1	reviewed	p.F198	0.000	48	0%	50	50%	0	-	-	-	-	NULL
CLEC6A	93978	genome.wustl.edu	37	12	8629918	8629918	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007033.1	+1	provisional	p.F163C	0.746	168	0%	290	43.4%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_Lectin_C,HMMSmart_CLECT,superfamily_C-type_lectin_fold
PZP	5858	genome.wustl.edu	37	12	9318693	9318693	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002864.2	-1	validated	p.R738Q	0.058	129	0%	195	46.7%	0	-	probably_damaging(0.999)	tolerated(0.39)	deleterious(0.506)	NULL
PZP	5858	genome.wustl.edu	37	12	9333638	9333638	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002864.2	-1	validated	p.R594C	0.096	33	0%	50	46%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_A2M_N_2
CSDA	8531	genome.wustl.edu	37	12	10865863	10865863	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003651.4	-1	validated	p.R174W	1.000	23	0%	22	40.9%	262	45%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
ATF7IP	55729	genome.wustl.edu	37	12	14613980	14613980	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018179.3	+1	validated	p.R904*	0.992	69	0%	86	53.5%	1	100%	-	-	-	NULL
ATF7IP	55729	genome.wustl.edu	37	12	14649176	14649176	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018179.3	+1	validated	p.R1098*	0.997	74	1.4%	67	35.8%	21	61.9%	-	-	-	NULL
PIK3C2G	5288	genome.wustl.edu	37	12	18699323	18699323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004570.4	+1	reviewed	p.R1142C	1.000	183	0%	242	44.6%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like)
PYROXD1	79912	genome.wustl.edu	37	12	21621560	21621560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024854.3	+1	validated	p.A459T	1.000	110	0%	144	47.2%	1	100%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
GYS2	2998	genome.wustl.edu	37	12	21716167	21716167	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021957.3	-1	reviewed	p.F312L	0.998	133	0%	178	43.3%	0	-	probably_damaging(0.982)	tolerated(0.11)	deleterious(0.698)	HMMPfam_Glycogen_syn,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
GYS2	2998	genome.wustl.edu	37	12	21721829	21721829	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021957.3	-1	reviewed	p.E265*	1.000	148	0%	210	46.7%	0	-	-	-	-	HMMPfam_Glycogen_syn,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
ABCC9	10060	genome.wustl.edu	37	12	22063212	22063212	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005691.2	-1	reviewed	p.T400M	1.000	113	0.9%	128	46.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
KRAS	3845	genome.wustl.edu	37	12	25368454	25368454	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033360.2	-1	reviewed	p.R164Q	1.000	423	0%	506	40.9%	0	-	probably_damaging(0.969)	deleterious(0)	deleterious(0.856)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
FGFR1OP2	26127	genome.wustl.edu	37	12	27116348	27116348	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015633.2	+1	validated	p.Q195R	0.867	75	0%	129	49.6%	4	25%	benign(0)	deleterious(0.02)	neutral(0.383)	HMMPfam_DUF837
MRPS35	60488	genome.wustl.edu	37	12	27908161	27908161	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021821.2	+1	reviewed	p.E250D	1.000	117	0%	155	49.7%	9	33.3%	probably_damaging(0.98)	tolerated(0.22)	neutral(0.466)	HMMPfam_MRP-S28
CAPRIN2	65981	genome.wustl.edu	37	12	30884441	30884441	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002259.1	-1	validated	p.K299T	1.000	223	0%	339	41.3%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
OVOS2	144203	genome.wustl.edu	37	12	31283496	31283496	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343151.1	-1	model	p.N1007S	0.952	159	0%	238	36.6%	0	-	-	-	-	superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp
SYT10	341359	genome.wustl.edu	37	12	33560206	33560206	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198992.2	-1	provisional	p.R199*	1.000	251	0%	367	45.8%	0	-	-	-	-	NULL
LRRK2	120892	genome.wustl.edu	37	12	40699613	40699613	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198578.3	+1	reviewed	p.E1268D	0.997	192	0%	213	38.5%	0	-	benign(0.054)	tolerated(0.1)	neutral(0.290)	superfamily_SSF52058
CNTN1	1272	genome.wustl.edu	37	12	41318361	41318361	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001843.2	+1	reviewed	p.L135I	1.000	92	0%	153	54.2%	2	0%	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	superfamily_Immunoglobulin
ADAMTS20	80070	genome.wustl.edu	37	12	43750332	43750332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025003.3	-1	validated	p.W1866C	1.000	170	0%	236	51.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GON
SLC48A1	55652	genome.wustl.edu	37	12	48174331	48174331	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390229	+1	known	p.S108Y	0.157	60	0%	46	37%	0	-	-	-	-	NULL
COL2A1	1280	genome.wustl.edu	37	12	48393747	48393747	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001844.4	-1	reviewed	p.G83R	1.000	73	0%	84	50%	1	100%	unknown(0)	deleterious(0)	-	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1
OR8S1	341568	genome.wustl.edu	37	12	48919445	48919445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005203.2	+1	validated	p.E11K	0.187	113	0%	136	39.7%	0	-	benign(0.004)	deleterious(0.02)	neutral(0.383)	superfamily_Family A G protein-coupled receptor-like
SMARCD1	6602	genome.wustl.edu	37	12	50481162	50481162	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003076.4	+1	reviewed	p.R183L	1.000	101	1%	106	56.6%	4	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KRT75	9119	genome.wustl.edu	37	12	52825417	52825417	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004693.2	-1	reviewed	p.V260	0.859	99	1%	116	45.7%	0	-	-	-	-	HMMPfam_Filament
KRT76	51350	genome.wustl.edu	37	12	53171000	53171000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015848.4	-1	reviewed	p.G26S	0.233	57	0%	68	42.6%	0	-	unknown(0)	tolerated(0.1)	-	NULL
ENSG00000247550	0	genome.wustl.edu	37	12	53433134	53433134	+	RNA	SNP	T	T	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000499537	-1	novel	NULL	0.000	101	0%	128	47.7%	7	57.1%	-	-	-	-
HOXC12	3228	genome.wustl.edu	37	12	54350305	54350305	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173860.1	+1	reviewed	p.K268N	1.000	50	0%	39	38.5%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1
NCKAP1L	3071	genome.wustl.edu	37	12	54930827	54930827	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005337.4	+1	reviewed	p.E1058A	1.000	158	0%	233	47.2%	3	0%	possibly_damaging(0.718)	deleterious(0)	deleterious(0.705)	HMMPfam_Nckap1
OR6C74	254783	genome.wustl.edu	37	12	55641710	55641710	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005490.1	+1	provisional	p.I213M	0.000	99	0%	150	47.3%	0	-	benign(0.152)	tolerated(0.07)	neutral(0.333)	HMMPfam_7tm_1,superfamily_SSF81321
OR6C1	390321	genome.wustl.edu	37	12	55714656	55714656	+	Silent	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005182.1	+1	provisional	p.S91	0.143	124	0%	185	42.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR6C3	254786	genome.wustl.edu	37	12	55725933	55725933	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_054104.1	+1	provisional	p.F150S	0.014	231	0%	291	47.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
OR6C75	390323	genome.wustl.edu	37	12	55759820	55759820	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005497.1	+1	provisional	p.S309Y	0.052	56	0%	61	36.1%	0	-	benign(0.029)	tolerated(1)	neutral(0.002)	NULL
OR6C65	403282	genome.wustl.edu	37	12	55795074	55795074	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005518.1	+1	provisional	p.I254M	0.292	158	0%	226	42.5%	0	-	probably_damaging(0.996)	deleterious(0.05)	deleterious(0.807)	HMMPfam_7tm_1,superfamily_SSF81321
MMP19	4327	genome.wustl.edu	37	12	56231124	56231124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002429.4	-1	reviewed	p.R408Q	0.000	64	0%	71	52.1%	6	0%	benign(0.005)	tolerated(0.19)	neutral(0.050)	superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120
ERBB3	2065	genome.wustl.edu	37	12	56495457	56495457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001982.2	+1	reviewed	p.S1216F	0.999	60	0%	77	42.9%	125	47.2%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
MYO1A	4640	genome.wustl.edu	37	12	57430619	57430619	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005379.2	-1	reviewed	p.K737	1.000	239	0%	325	44.3%	0	-	-	-	-	HMMSmart_IQ,superfamily_SSF52540
INHBE	83729	genome.wustl.edu	37	12	57849372	57849372	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031479.3	+1	validated	p.R18Q	0.178	24	0%	19	42.1%	0	-	benign(0)	tolerated(0.36)	neutral(0.020)	NULL
KIF5A	3798	genome.wustl.edu	37	12	57966424	57966424	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004984.2	+1	reviewed	p.R544Q	1.000	69	0%	74	51.4%	0	-	probably_damaging(0.985)	tolerated(0.07)	deleterious(0.751)	NULL
KIF5A	3798	genome.wustl.edu	37	12	57966430	57966430	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004984.2	+1	reviewed	p.R546Q	1.000	73	0%	80	40%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
SRGAP1	57522	genome.wustl.edu	37	12	64488754	64488754	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020762.2	+1	validated	p.R528W	1.000	183	0%	238	44.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
IFNG	3458	genome.wustl.edu	37	12	68551754	68551754	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000619.2	-1	reviewed	p.V102A	0.000	269	0%	410	48%	0	-	possibly_damaging(0.908)	tolerated(1)	neutral(0.361)	HMMPfam_IFN-gamma,superfamily_4-helical cytokines
PTPRB	5787	genome.wustl.edu	37	12	70980858	70980858	+	Missense_Mutation	SNP	C	C	T	rs184275696	by1000genomes	TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001109754.1	-1	reviewed	p.R747Q	1.000	159	0.6%	185	43.2%	1	0%	probably_damaging(1)	tolerated(0.55)	deleterious(0.507)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
ZFC3H1	196441	genome.wustl.edu	37	12	72050778	72050778	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144982.4	-1	validated	p.L301S	1.000	225	0%	298	50%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
THAP2	83591	genome.wustl.edu	37	12	72068120	72068120	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031435.2	+1	provisional	p.R70Q	1.000	131	0%	166	43.4%	1	100%	probably_damaging(0.975)	tolerated(0.27)	neutral(0.451)	HMMPfam_THAP,HMMSmart_SM00692
NAV3	89795	genome.wustl.edu	37	12	78579429	78579429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014903.4	+1	validated	p.R1892H	1.000	272	0%	339	46.3%	0	-	benign(0.001)	tolerated(0.21)	neutral(0.044)	NULL
NAV3	89795	genome.wustl.edu	37	12	78593140	78593140	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014903.4	+1	validated	p.E2160*	1.000	96	0%	148	43.9%	0	-	-	-	-	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
SLC6A15	55117	genome.wustl.edu	37	12	85279757	85279757	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182767.4	-1	validated	p.R127Q	0.995	174	0%	262	45%	0	-	possibly_damaging(0.936)	tolerated(0.45)	neutral(0.394)	HMMPfam_SNF
CEP290	80184	genome.wustl.edu	37	12	88523630	88523630	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025114.3	-1	reviewed	p.K231N	0.992	183	0%	268	43.7%	0	-	probably_damaging(0.998)	tolerated(0.45)	deleterious(0.486)	NULL
PLEKHG7	440107	genome.wustl.edu	37	12	93157971	93157971	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004330.2	+1	validated	e9+1	1.000	202	0%	276	46.4%	0	-	-	-	-	-
LOC100127919	100127919	genome.wustl.edu	37	12	93429119	93429119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001719900.1	+1	model	p.D27N	0.001	31	0%	44	25%	0	-	-	-	-	NULL
CDK17	5128	genome.wustl.edu	37	12	96676323	96676323	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002595.3	-1	reviewed	p.R474*	1.000	201	0%	286	40.6%	0	-	-	-	-	superfamily_Protein kinase-like (PK-like)
LOC121456	121456	genome.wustl.edu	37	12	98848731	98848731	+	RNA	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_016411.2	-1	model	NULL	0.837	19	0%	32	28.1%	0	-	-	-	-	-
SCYL2	55681	genome.wustl.edu	37	12	100707248	100707248	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017988.4	+1	provisional	p.R301C	1.000	123	0%	163	46.6%	0	-	benign(0.175)	deleterious(0)	neutral(0.461)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,HMMPfam_Pkinase
UTP20	27340	genome.wustl.edu	37	12	101777344	101777344	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014503.2	+1	validated	p.L2651	0.001	63	0%	97	43.3%	14	28.5%	-	-	-	NULL
MYBPC1	4604	genome.wustl.edu	37	12	102043085	102043085	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002465.2	+1	validated	p.R415Q	0.000	152	0%	198	41.9%	0	-	benign(0.1)	deleterious(0.02)	neutral(0.391)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
NT5DC3	51559	genome.wustl.edu	37	12	104200137	104200137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031701.2	-1	validated	p.D163N	1.000	182	0.5%	217	48.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_5_nucleotid,superfamily_HAD-like
SVOP	55530	genome.wustl.edu	37	12	109328032	109328032	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018711.2	-1	validated	p.L269I	0.998	74	0%	69	49.3%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
RAD9B	144715	genome.wustl.edu	37	12	110950593	110950593	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152442.3	+1	validated	p.R133I	0.977	176	0%	237	44.3%	0	-	possibly_damaging(0.846)	deleterious(0)	deleterious(0.770)	HMMPfam_Rad9,superfamily_DNA clamp
C12orf51	283450	genome.wustl.edu	37	12	112617082	112617082	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001109662.2	-1	validated	p.L3281F	1.000	145	0%	171	46.2%	1	100%	probably_damaging(0.996)	-	-	NULL
SDS	10993	genome.wustl.edu	37	12	113835050	113835050	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006843.2	-1	reviewed	p.I191	0.996	22	0%	17	35.3%	0	-	-	-	-	HMMPfam_PALP,superfamily_PyrdxlP-dep_enz_bsu
TCTN2	79867	genome.wustl.edu	37	12	124155823	124155823	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024809.3	+1	validated	p.R12	0.512	48	0%	48	43.8%	3	66.6%	-	-	-	NULL
POLE	5426	genome.wustl.edu	37	12	133250289	133250289	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006231.2	-1	validated	p.V411L	1.000	25	0%	32	53.1%	8	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DNA_pol_B_exo,HMMSmart_POLBc,superfamily_RNaseH_fold
GOLGA3	2802	genome.wustl.edu	37	12	133363362	133363362	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005895.3	-1	reviewed	p.F941	0.596	43	0%	69	49.3%	22	45.4%	-	-	-	superfamily_Prefoldin
ZNF10	7556	genome.wustl.edu	37	12	133732854	133732854	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015394.4	+1	reviewed	p.R341I	1.000	122	0%	211	45%	6	66.6%	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ENSG00000187721	0	genome.wustl.edu	37	13	19600475	19600475	+	Missense_Mutation	SNP	C	C	T	rs9511168	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000433887	-1	known	p.D111N	0.973	25	0%	67	31.3%	0	-	benign(0.005)	deleterious(0.05)	neutral(0.345)	HMMPfam_GTF2I
TPTE2	93492	genome.wustl.edu	37	13	20067596	20067596	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199254.2	-1	validated	p.A19	0.000	261	0%	287	47.7%	0	-	-	-	-	NULL
ZMYM2	7750	genome.wustl.edu	37	13	20567691	20567691	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003453.2	+1	validated	p.F160C	1.000	120	0%	200	43%	0	-	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	NULL
SGCG	6445	genome.wustl.edu	37	13	23777928	23777928	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000231.2	+1	reviewed	p.R32I	1.000	273	0%	292	30.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sarcoglycan_1
SACS	26278	genome.wustl.edu	37	13	23914732	23914732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014363.4	-1	reviewed	p.E1095K	1.000	156	0%	187	46%	0	-	possibly_damaging(0.605)	tolerated(0.62)	neutral(0.213)	NULL
RNF17	56163	genome.wustl.edu	37	13	25367214	25367214	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031277.2	+1	reviewed	p.V324F	0.869	73	0%	70	41.4%	0	-	benign(0.267)	tolerated(0.05)	neutral(0.373)	NULL
WASF3	10810	genome.wustl.edu	37	13	27256755	27256755	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006646.5	+1	reviewed	p.A332V	0.962	65	0%	77	45.5%	2	50%	benign(0.003)	tolerated(0.32)	neutral(0.024)	NULL
USP12	219333	genome.wustl.edu	37	13	27649442	27649442	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182488.2	-1	provisional	p.K273T	1.000	140	0%	204	53.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UCH,superfamily_SSF54001
HMGB1	3146	genome.wustl.edu	37	13	31036813	31036813	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002128.4	-1	validated	p.P111	0.164	165	0%	206	42.2%	156	42.9%	-	-	-	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box
B3GALTL	145173	genome.wustl.edu	37	13	31789216	31789216	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194318.3	+1	reviewed	p.K33	0.982	226	0%	228	49.6%	0	-	-	-	-	NULL
NBEA	26960	genome.wustl.edu	37	13	35615082	35615082	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015678.4	+1	validated	p.E103*	1.000	93	0%	156	39.7%	0	-	-	-	-	superfamily_ARM repeat
NBEA	26960	genome.wustl.edu	37	13	35692368	35692368	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015678.4	+1	validated	p.R696*	1.000	163	0%	282	45%	0	-	-	-	-	superfamily_ARM repeat
MAB21L1	4081	genome.wustl.edu	37	13	36049807	36049807	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005584.4	-1	reviewed	p.E157K	1.000	29	0%	29	44.8%	0	-	possibly_damaging(0.864)	tolerated(0.05)	deleterious(0.680)	HMMPfam_Mab-21
LHFP	10186	genome.wustl.edu	37	13	40175255	40175255	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005780.2	-1	reviewed	p.L33	1.000	26	0%	27	44.4%	36	38.8%	-	-	-	HMMPfam_L_HGMIC_fpl
COG6	57511	genome.wustl.edu	37	13	40235011	40235011	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020751.2	+1	reviewed	p.R121H	1.000	153	0%	212	41.5%	1	0%	benign(0.265)	deleterious(0.04)	neutral(0.377)	HMMPfam_COG6
RB1	5925	genome.wustl.edu	37	13	48919244	48919244	+	Nonsense_Mutation	SNP	G	G	T	rs121913296		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000321.2	+1	reviewed	p.E137*	1.000	279	0%	342	41.5%	0	-	-	-	-	NULL
RB1	5925	genome.wustl.edu	37	13	48955517	48955517	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000321.2	+1	reviewed	p.E545*	1.000	150	0%	170	45.3%	0	-	-	-	-	HMMPfam_RB_A,superfamily_Cyclin-like
CKAP2	26586	genome.wustl.edu	37	13	53030673	53030673	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098525.1	+1	validated	p.K29T	1.000	154	0%	220	42.7%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KLHL1	57626	genome.wustl.edu	37	13	70370969	70370969	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020866.2	-1	validated	p.R514*	1.000	138	0%	166	39.2%	0	-	-	-	-	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
FBXL3	26224	genome.wustl.edu	37	13	77581816	77581816	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012158.2	-1	reviewed	p.R251*	1.000	108	0%	113	48.7%	10	60%	-	-	-	superfamily_SSF52047
ABCC4	10257	genome.wustl.edu	37	13	95735441	95735441	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005845.3	-1	reviewed	p.R880Q	0.071	108	0%	118	39.8%	0	-	possibly_damaging(0.691)	tolerated(0.52)	neutral(0.256)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCC4	10257	genome.wustl.edu	37	13	95899266	95899266	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005845.3	-1	reviewed	p.K90T	1.000	189	0%	260	38.1%	0	-	probably_damaging(0.986)	tolerated(0.39)	neutral(0.451)	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
DZIP1	22873	genome.wustl.edu	37	13	96274632	96274632	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198968.2	-1	validated	p.D359N	1.000	242	0.4%	385	42.3%	1	100%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
SLC15A1	6564	genome.wustl.edu	37	13	99358477	99358477	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005073.3	-1	reviewed	p.E394K	0.003	276	0%	366	41%	0	-	possibly_damaging(0.439)	tolerated(0.08)	neutral(0.443)	HMMPfam_PTR2,superfamily_MFS general substrate transporter
PCCA	5095	genome.wustl.edu	37	13	100953797	100953797	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000282.3	+1	reviewed	p.R383	0.996	91	0%	114	43%	6	50%	-	-	-	HMMPfam_CPSase_L_D2,superfamily_SSF56059
LOC643677	643677	genome.wustl.edu	37	13	103391959	103391959	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344085.1	-1	model	p.E3625D	0.001	193	0%	255	51%	0	-	-	-	-	NULL
ERCC5	2073	genome.wustl.edu	37	13	103504590	103504590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000123.2	+1	reviewed	p.R71C	1.000	228	0%	324	47.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_XPG_N,HMMSmart_SM00485,PatternScan_XPG_1,superfamily_PIN domain-like
ERCC5	2073	genome.wustl.edu	37	13	103508441	103508441	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000123.2	+1	reviewed	p.M169I	1.000	304	0.3%	440	37%	2	0%	benign(0.061)	tolerated(0.36)	neutral(0.024)	superfamily_PIN domain-like
F7	2155	genome.wustl.edu	37	13	113771901	113771901	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000131.3	+1	reviewed	p.A266T	0.008	79	0%	72	41.7%	1	0%	benign(0.197)	deleterious(0.03)	neutral(0.383)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
CUL4A	8451	genome.wustl.edu	37	13	113898790	113898790	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008895.1	+1	validated	p.T432M	1.000	71	0%	66	40.9%	18	44.4%	benign(0.001)	tolerated(0.26)	neutral(0.034)	HMMPfam_Cullin,superfamily_Cullin homology domain
TFDP1	7027	genome.wustl.edu	37	13	114287535	114287535	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007111.4	+1	reviewed	p.E137K	1.000	46	0%	40	55%	95	47.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_E2F_TDP,superfamily_SSF46785
ATP4B	496	genome.wustl.edu	37	13	114312455	114312455	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000705.3	-1	reviewed	p.A2V	0.995	14	0%	14	50%	0	-	probably_damaging(0.999)	tolerated(0.34)	deleterious(0.513)	HMMPfam_Na_K-ATPase
POTEM	641455	genome.wustl.edu	37	14	19990656	19990656	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145442.1	-1	provisional	p.Q473	0.687	955	0%	1381	7.7%	0	-	-	-	-	NULL
ENSG00000226518	0	genome.wustl.edu	37	14	20085467	20085467	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000422907	+1	known	p.T23	0.995	135	0%	214	10.3%	0	-	-	-	-	NULL
OR4L1	122742	genome.wustl.edu	37	14	20529126	20529126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004717.1	+1	provisional	p.S308F	0.000	60	0%	78	46.2%	0	-	possibly_damaging(0.918)	tolerated(0.44)	neutral(0.381)	NULL
RNASE6	6039	genome.wustl.edu	37	14	21249896	21249896	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005615.4	+1	validated	p.V13A	0.003	162	0%	171	43.9%	0	-	unknown(0)	tolerated(0.07)	-	NULL
ARHGEF40	55701	genome.wustl.edu	37	14	21546355	21546355	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018071.3	+1	validated	p.R685H	0.052	139	0%	156	41%	34	58.8%	benign(0.001)	tolerated(0.11)	neutral(0.272)	NULL
CHD8	57680	genome.wustl.edu	37	14	21873439	21873439	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020920.3	-1	reviewed	p.T800I	1.000	116	0%	168	44%	2	50%	benign(0.022)	tolerated(0.12)	neutral(0.262)	HMMPfam_SNF2_N
TM9SF1	10548	genome.wustl.edu	37	14	24662303	24662303	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006405.5	-1	validated	p.R173Q	1.000	70	0%	97	38.1%	99	39.3%	possibly_damaging(0.478)	tolerated(0.25)	neutral(0.195)	HMMPfam_EMP70
CHMP4A	29082	genome.wustl.edu	37	14	24680896	24680896	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014169.2	-1	validated	p.K100N	0.999	329	0%	488	42%	29	51.7%	possibly_damaging(0.952)	tolerated(0.07)	deleterious(0.715)	HMMPfam_Snf7
CTSG	1511	genome.wustl.edu	37	14	25044567	25044567	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001911.2	-1	reviewed	p.A36V	0.972	51	0%	72	48.6%	0	-	possibly_damaging(0.629)	tolerated(0.05)	deleterious(0.565)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
FOXG1	2290	genome.wustl.edu	37	14	29237531	29237531	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005249.3	+1	reviewed	p.S349L	1.000	18	0%	14	28.6%	116	55.1%	benign(0.068)	deleterious(0.04)	neutral(0.353)	NULL
STRN3	29966	genome.wustl.edu	37	14	31425380	31425380	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083893.1	-1	validated	p.R117S	1.000	296	0%	356	46.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Striatin
CFL2	1073	genome.wustl.edu	37	14	35182749	35182749	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021914.7	-1	reviewed	p.N8H	1.000	157	0%	217	38.7%	0	-	benign(0.156)	deleterious(0.01)	neutral(0.420)	superfamily_Actin depolymerizing proteins
BAZ1A	11177	genome.wustl.edu	37	14	35224069	35224069	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013448.2	-1	validated	p.R1480C	1.000	301	0%	396	44.7%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1
TTC6	319089	genome.wustl.edu	37	14	38296491	38296491	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343299.1	+1	model	p.A1468S	1.000	189	0%	253	43.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
RPL10L	140801	genome.wustl.edu	37	14	47120879	47120879	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080746.2	-1	reviewed	p.R21C	1.000	48	0%	96	45.8%	0	-	possibly_damaging(0.912)	deleterious(0)	deleterious(0.808)	HMMPfam_Ribosomal_L16,superfamily_Ribosomal_L10e/L16
SOS2	6655	genome.wustl.edu	37	14	50649249	50649249	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006939.2	-1	validated	p.T264A	1.000	121	0%	184	48.4%	1	100%	benign(0.005)	tolerated(0.71)	neutral(0.002)	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain
ATP5S	27109	genome.wustl.edu	37	14	50792376	50792376	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003803.1	+1	reviewed	p.E195*	1.000	226	0%	275	44.4%	2	0%	-	-	-	superfamily_RNI-like
PYGL	5836	genome.wustl.edu	37	14	51379808	51379808	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002863.4	-1	reviewed	p.T520M	0.978	68	0%	56	48.2%	8	50%	benign(0.394)	deleterious(0.01)	deleterious(0.532)	HMMPfam_Phosphorylase,superfamily_SSF53756
TRIM9	114088	genome.wustl.edu	37	14	51467451	51467451	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015163.5	-1	reviewed	p.A472T	0.994	94	0%	122	41.8%	0	-	benign(0)	tolerated(0.08)	neutral(0.300)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
FRMD6	122786	genome.wustl.edu	37	14	52182158	52182158	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042481.1	+1	validated	p.R314H	1.000	78	0%	85	42.4%	2	100%	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	HMMPfam_FERM_C,superfamily_SSF50729
GNG2	54331	genome.wustl.edu	37	14	52433368	52433368	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053064.3	+1	validated	p.P60L	1.000	85	0%	112	54.5%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_G-gamma,HMMSmart_SM00224,superfamily_Transducin (heterotrimeric G protein) gamma chain
NAA30	122830	genome.wustl.edu	37	14	57858280	57858280	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001011713.2	+1	validated	p.G202D	1.000	19	0%	21	47.6%	3	33.3%	benign(0.014)	tolerated(0.1)	neutral(0.287)	NULL
KCNH5	27133	genome.wustl.edu	37	14	63174447	63174447	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139318.3	-1	reviewed	p.E916K	1.000	153	0.7%	170	48.2%	0	-	possibly_damaging(0.934)	deleterious(0.01)	deleterious(0.786)	NULL
SYNE2	23224	genome.wustl.edu	37	14	64447403	64447403	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182914.2	+1	reviewed	p.R534Q	1.000	105	0%	134	39.6%	0	-	benign(0.019)	-	-	superfamily_Spectrin
SYNE2	23224	genome.wustl.edu	37	14	64450593	64450593	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182914.2	+1	reviewed	p.Q714*	0.000	43	0%	78	28.2%	0	-	-	-	-	NULL
MTHFD1	4522	genome.wustl.edu	37	14	64921540	64921540	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005956.3	+1	reviewed	p.R889C	1.000	122	0%	148	51.4%	161	39.1%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_FTHFS,superfamily_P-loop containing nucleoside triphosphate hydrolases
LOC100287214	100287214	genome.wustl.edu	37	14	65007804	65007804	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343281.1	-1	model	p.E464K	0.997	47	0%	45	40%	66	39.3%	-	-	-	HMMPfam_NAD-GH
FUT8	2530	genome.wustl.edu	37	14	66083894	66083894	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004480.3	+1	reviewed	p.R27I	0.995	235	0%	340	42.6%	0	-	unknown(0)	tolerated(0.08)	-	NULL
DCAF5	8816	genome.wustl.edu	37	14	69588992	69588992	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003861.2	-1	validated	p.H100	1.000	88	0%	106	41.5%	17	35.2%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
ENSG00000175985	0	genome.wustl.edu	37	14	69995060	69995060	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000322564	+1	known	p.R482H	1.000	22	0%	36	55.6%	0	-	benign(0.001)	deleterious(0.05)	neutral(0.345)	NULL
YLPM1	56252	genome.wustl.edu	37	14	75265954	75265954	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019589.2	+1	validated	p.E1318	1.000	237	0%	293	42.7%	16	56.2%	-	-	-	NULL
PGF	5228	genome.wustl.edu	37	14	75415217	75415217	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002632.4	-1	validated	p.E129K	0.995	18	0%	32	43.8%	1	0%	possibly_damaging(0.915)	deleterious(0.03)	deleterious(0.731)	HMMPfam_PDGF,HMMSmart_SM00141,superfamily_Cystine-knot cytokines
C14orf118	55668	genome.wustl.edu	37	14	76638221	76638221	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017926.2	+1	validated	p.E255*	1.000	161	0%	206	41.3%	6	16.6%	-	-	-	NULL
STON2	85439	genome.wustl.edu	37	14	81864721	81864721	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033104.2	-1	provisional	p.T2	1.000	77	0%	125	44%	0	-	-	-	-	NULL
FLRT2	23768	genome.wustl.edu	37	14	86088162	86088162	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013231.4	+1	reviewed	p.E102K	1.000	81	0%	85	38.8%	1	100%	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	superfamily_SSF52058
PSMC1	5700	genome.wustl.edu	37	14	90734712	90734712	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002802.2	+1	reviewed	p.P279L	1.000	120	0%	162	35.8%	69	47.8%	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
C14orf142	84520	genome.wustl.edu	37	14	93670072	93670072	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032490.4	-1	validated	p.F88	1.000	431	0%	682	19.6%	27	0%	benign(0.113)	-	-	NULL
SERPINA11	256394	genome.wustl.edu	37	14	94909493	94909493	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080451.1	-1	provisional	p.Q329H	0.000	148	0%	165	40.6%	0	-	benign(0)	tolerated(0.11)	neutral(0.272)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
ATG2B	55102	genome.wustl.edu	37	14	96769478	96769478	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018036.5	-1	validated	p.R1653C	1.000	139	0%	180	41.7%	0	-	benign(0.417)	deleterious(0.04)	deleterious(0.484)	NULL
PPP2R5C	5527	genome.wustl.edu	37	14	102323067	102323067	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002719.3	+1	reviewed	p.R47C	1.000	174	0%	270	50.7%	16	50%	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	HMMPfam_B56
PPP2R5C	5527	genome.wustl.edu	37	14	102349628	102349628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002719.3	+1	reviewed	p.S147F	1.000	369	0%	440	44.3%	0	-	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	HMMPfam_B56,superfamily_ARM repeat
TRAF3	7187	genome.wustl.edu	37	14	103342015	103342015	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003300.2	+1	reviewed	p.R118W	1.000	140	0%	207	45.4%	2	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Traf_like,superfamily_SSF57850
ADSSL1	122622	genome.wustl.edu	37	14	105212598	105212598	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199165.1	+1	validated	p.V442	0.969	20	0%	30	46.7%	39	64.1%	-	-	-	HMMPfam_Adenylsucc_synt,HMMSmart_Adenylsucc_synt,superfamily_SSF52540
ENSG00000215407	0	genome.wustl.edu	37	15	20450215	20450215	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000400226	-1	known	p.Y369	0.879	103	0%	118	11.9%	5	0%	-	-	-	HMMPfam_BRO1
GOLGA6L6	727832	genome.wustl.edu	37	15	20739707	20739707	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145004.1	-1	inferred	p.E681D	0.231	82	0%	122	13.1%	0	-	unknown(0)	tolerated(0.1)	-	NULL
GOLGA6L1	283767	genome.wustl.edu	37	15	22743347	22743347	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001413.3	+1	provisional	p.E578K	0.134	86	0%	154	16.2%	0	-	unknown(0)	tolerated(0.5)	-	NULL
ENSG00000223681	0	genome.wustl.edu	37	15	23326048	23326048	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000422607	-1	known	p.R215Q	1.000	204	0%	298	22.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ENSG00000206149	0	genome.wustl.edu	37	15	28913435	28913435	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000383034	+1	known	p.T429	0.756	131	0.8%	175	26.9%	23	17.3%	-	-	-	NULL
PGBD4	161779	genome.wustl.edu	37	15	34395967	34395967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152595.4	+1	validated	p.G412V	0.327	60	0%	60	50%	1	100%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
SLC12A6	9990	genome.wustl.edu	37	15	34543218	34543218	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133647.1	-1	reviewed	p.I458	0.623	155	0%	204	45.6%	0	-	-	-	-	HMMPfam_AA_permease
LTK	4058	genome.wustl.edu	37	15	41805310	41805310	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002344.5	-1	reviewed	p.L18I	0.952	27	0%	31	38.7%	0	-	possibly_damaging(0.945)	tolerated(0.76)	neutral(0.391)	NULL
CDAN1	146059	genome.wustl.edu	37	15	43021288	43021288	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138477.2	-1	reviewed	p.P860T	1.000	57	0%	81	50.6%	2	100%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
SEMA6D	80031	genome.wustl.edu	37	15	48056234	48056234	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153618.1	+1	reviewed	p.V312A	1.000	147	0%	187	42.2%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
SLC12A1	6557	genome.wustl.edu	37	15	48521429	48521429	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000338.2	+1	reviewed	p.F256	0.775	292	0%	381	45.9%	0	-	-	-	-	HMMPfam_AA_permease
FBN1	2200	genome.wustl.edu	37	15	48729257	48729257	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000138.4	-1	reviewed	p.E2133*	1.000	145	0%	150	52.7%	4	0%	-	-	-	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
SECISBP2L	9728	genome.wustl.edu	37	15	49320745	49320745	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014701.2	-1	provisional	p.D267N	1.000	86	0%	125	47.2%	3	66.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
COPS2	9318	genome.wustl.edu	37	15	49426248	49426248	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143887.1	-1	validated	p.F265C	1.000	219	0%	306	42.2%	11	81.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00753,superfamily_TPR-like
ATP8B4	79895	genome.wustl.edu	37	15	50288950	50288950	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024837.2	-1	validated	p.T171	0.021	244	0.4%	284	41.2%	0	-	-	-	-	HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF81665
USP8	9101	genome.wustl.edu	37	15	50782026	50782026	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128610.1	+1	validated	p.R640Q	0.982	37	0%	33	54.5%	8	75%	possibly_damaging(0.809)	deleterious(0.03)	deleterious(0.669)	NULL
TRPM7	54822	genome.wustl.edu	37	15	50929630	50929630	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017672.4	-1	reviewed	p.R274I	1.000	112	0%	130	45.4%	1	100%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
GLDN	342035	genome.wustl.edu	37	15	51696535	51696535	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181789.2	+1	validated	p.R414*	1.000	104	0%	122	13.9%	0	-	-	-	-	HMMPfam_OLF,HMMSmart_SM00284
TEX9	374618	genome.wustl.edu	37	15	56681593	56681593	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198524.1	+1	provisional	p.N130	0.928	171	0%	264	40.9%	5	60%	-	-	-	NULL
TPM1	7168	genome.wustl.edu	37	15	63336311	63336311	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000366.5	+1	reviewed	p.A67V	1.000	58	0%	35	51.4%	14	35.7%	benign(0)	tolerated(0.17)	neutral(0.059)	HMMPfam_Tropomyosin
ITGA11	22801	genome.wustl.edu	37	15	68595466	68595466	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004439.1	-1	reviewed	p.L1166	1.000	21	0%	22	40.9%	1	0%	-	-	-	NULL
NOX5	79400	genome.wustl.edu	37	15	69327808	69327808	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024505.3	+1	validated	p.L306	0.459	32	0%	37	37.8%	2	0%	-	-	-	HMMPfam_Ferric_reduct
NOX5	79400	genome.wustl.edu	37	15	69339761	69339761	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024505.3	+1	validated	p.I549	0.964	40	0%	67	49.3%	0	-	-	-	-	HMMPfam_FAD_binding_8,superfamily_Riboflavin_synthase_like_b-brl
MYO9A	4649	genome.wustl.edu	37	15	72196305	72196305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006901.2	-1	validated	p.R948C	1.000	132	0%	186	39.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
ISLR2	57611	genome.wustl.edu	37	15	74425948	74425948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130136.1	+1	validated	p.P285S	0.031	24	0%	42	54.8%	4	50%	benign(0.003)	tolerated(0.27)	neutral(0.034)	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
ISLR2	57611	genome.wustl.edu	37	15	74427234	74427234	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130136.1	+1	validated	p.F713	1.000	19	0%	16	50%	0	-	-	-	-	NULL
COX5A	9377	genome.wustl.edu	37	15	75221559	75221559	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004255.3	-1	reviewed	p.R39C	0.982	129	0%	152	34.2%	161	45.9%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
SNX33	257364	genome.wustl.edu	37	15	75942913	75942913	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153271.1	+1	provisional	p.K490N	1.000	34	0%	67	49.3%	37	43.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_BAR_3_WASP_bdg
KIAA1024	23251	genome.wustl.edu	37	15	79760632	79760632	+	Missense_Mutation	SNP	G	G	A	rs189062292	by1000genomes	TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015206.2	+1	validated	p.R886Q	1.000	54	0%	68	51.5%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_UPF0258
EFTUD1	79631	genome.wustl.edu	37	15	82456240	82456240	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024580.5	-1	validated	p.F612	0.961	195	0%	189	37.6%	5	20%	-	-	-	superfamily_EF-G C-terminal domain-like
EFTUD1	79631	genome.wustl.edu	37	15	82545089	82545089	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024580.5	-1	validated	p.E63*	1.000	180	0%	256	41%	3	0%	-	-	-	HMMPfam_GTP_EFTU,superfamily_P-loop containing nucleoside triphosphate hydrolases
BNC1	646	genome.wustl.edu	37	15	83926709	83926709	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001717.3	-1	reviewed	p.T824A	0.000	108	0%	173	46.8%	0	-	benign(0.001)	tolerated(0.25)	neutral(0.037)	NULL
AGBL1	123624	genome.wustl.edu	37	15	86807696	86807696	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152336.2	+1	validated	p.K386Q	0.001	40	0%	55	50.9%	0	-	benign(0.002)	tolerated(0.55)	neutral(0.007)	NULL
AGBL1	123624	genome.wustl.edu	37	15	87097665	87097665	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152336.2	+1	validated	p.S918Y	0.995	71	0%	76	42.1%	0	-	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	HMMPfam_Peptidase_M14
MRPS11	64963	genome.wustl.edu	37	15	89020250	89020250	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022839.2	+1	reviewed	p.R148*	1.000	94	1.1%	120	41.7%	193	35.2%	-	-	-	HMMPfam_Ribosomal_S11,superfamily_Translational machinery components
HDDC3	374659	genome.wustl.edu	37	15	91475068	91475068	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198527.2	-1	provisional	p.D92G	1.000	56	0%	52	30.8%	15	40%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMSmart_HDc,HMMPfam_HD,superfamily_SSF109604
SV2B	9899	genome.wustl.edu	37	15	91824966	91824966	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014848.4	+1	validated	p.R461K	1.000	103	0%	148	45.9%	0	-	benign(0)	tolerated(1)	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
SLCO3A1	28232	genome.wustl.edu	37	15	92694235	92694235	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013272.3	+1	validated	p.R582C	0.972	447	0%	644	42.4%	40	32.5%	benign(0.167)	deleterious(0)	neutral(0.460)	HMMPfam_OATP,superfamily_MFS general substrate transporter
CHD2	1106	genome.wustl.edu	37	15	93540231	93540231	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001271.3	+1	reviewed	p.G1214R	1.000	177	0%	211	49.8%	3	0%	possibly_damaging(0.929)	tolerated(0.09)	deleterious(0.672)	superfamily_P-loop containing nucleoside triphosphate hydrolases
MCTP2	55784	genome.wustl.edu	37	15	94983437	94983437	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018349.3	+1	validated	p.L706	0.995	283	0%	410	42.4%	0	-	-	-	-	NULL
SYNM	23336	genome.wustl.edu	37	15	99670115	99670115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000336292	+1	known	p.R516Q	0.000	77	0%	129	45%	1	0%	benign(0.027)	tolerated(0.74)	neutral(0.003)	NULL
OR4F4	26682	genome.wustl.edu	37	15	102462622	102462622	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004195.2	-1	provisional	p.I214T	0.756	318	0%	464	67%	0	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_7tm_1,superfamily_SSF81321
RNPS1	10921	genome.wustl.edu	37	16	2313274	2313274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006711.2	-1	reviewed	p.S81L	1.000	31	0%	30	43.3%	157	37.5%	unknown(0)	tolerated(0.06)	-	NULL
SRRM2	23524	genome.wustl.edu	37	16	2814654	2814654	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016333.3	+1	validated	p.S1375	0.056	38	0%	60	51.7%	32	56.2%	-	-	-	NULL
THOC6	79228	genome.wustl.edu	37	16	3076562	3076562	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024339.3	+1	validated	p.M153V	0.971	101	0%	124	45.2%	140	47.8%	benign(0.271)	tolerated(0.58)	neutral(0.034)	superfamily_WD40 repeat-like
OR1F1	4992	genome.wustl.edu	37	16	3254956	3254956	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012360.1	+1	provisional	p.A237V	1.000	102	0%	165	47.9%	0	-	probably_damaging(0.973)	tolerated(0.1)	deleterious(0.702)	HMMPfam_7tm_1,superfamily_SSF81321
NLRC3	197358	genome.wustl.edu	37	16	3598710	3598710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178844.2	-1	validated	p.A883T	0.989	28	0%	37	45.9%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00368,superfamily_RNI-like
TFAP4	7023	genome.wustl.edu	37	16	4310153	4310153	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003223.2	-1	validated	p.G254S	1.000	109	0%	124	45.2%	53	37.7%	probably_damaging(0.996)	tolerated(0.72)	neutral(0.463)	NULL
GRIN2A	2903	genome.wustl.edu	37	16	9857926	9857926	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000833.3	-1	reviewed	p.R1159C	0.995	59	0%	86	46.5%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_NMDAR2_C
TEKT5	146279	genome.wustl.edu	37	16	10775897	10775897	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144674.1	-1	provisional	p.T272	0.362	129	0%	127	48%	1	100%	-	-	-	HMMPfam_Tektin
GSPT1	2935	genome.wustl.edu	37	16	11981523	11981523	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002094.3	-1	validated	p.T287	0.210	238	0%	335	45.1%	5	20%	-	-	-	HMMPfam_GTP_EFTU,superfamily_P-loop containing nucleoside triphosphate hydrolases
C16orf45	89927	genome.wustl.edu	37	16	15528527	15528527	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033201.2	+1	validated	p.S6Y	1.000	40	0%	38	39.5%	8	12.5%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
MYH11	4629	genome.wustl.edu	37	16	15831463	15831463	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040114.1	-1	reviewed	p.E1053*	1.000	62	0%	69	47.8%	3	0%	-	-	-	NULL
GP2	2813	genome.wustl.edu	37	16	20329667	20329667	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007240.1	-1	validated	p.E368K	0.975	96	0%	143	51%	0	-	probably_damaging(0.985)	tolerated(0.41)	neutral(0.447)	HMMPfam_Zona_pellucida,HMMSmart_SM00241
ACSM2B	348158	genome.wustl.edu	37	16	20576154	20576154	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105069.1	-1	validated	p.R5Q	0.000	141	0%	112	42.9%	0	-	benign(0.023)	tolerated(0.35)	neutral(0.022)	NULL
LOC81691	81691	genome.wustl.edu	37	16	20838520	20838520	+	Splice_Site	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030941.2	+1	validated	e8+2	1.000	91	0%	113	42.5%	0	-	-	-	-	-
DNAH3	55567	genome.wustl.edu	37	16	21049287	21049287	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017539.1	-1	provisional	p.I1582	0.998	31	0%	48	45.8%	4	0%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
SLC5A11	115584	genome.wustl.edu	37	16	24888672	24888672	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052944.2	+1	provisional	p.Y191H	0.998	69	0%	74	43.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SSF
SRCAP	10847	genome.wustl.edu	37	16	30724113	30724113	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006662.2	+1	validated	p.K703Q	1.000	105	0%	154	40.3%	9	44.4%	unknown(0)	-	-	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
ITGAD	3681	genome.wustl.edu	37	16	31427562	31427562	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005353.2	+1	validated	p.D771G	0.319	81	0%	77	44.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Integrin_alpha2,superfamily_Integrin domains
SHCBP1	79801	genome.wustl.edu	37	16	46617954	46617954	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024745.4	-1	validated	p.D504E	0.999	92	0%	140	37.9%	2	0%	possibly_damaging(0.474)	tolerated(0.15)	neutral(0.397)	HMMSmart_SM00710,superfamily_Pectin lyase-like
CYLD	1540	genome.wustl.edu	37	16	50815308	50815308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015247.2	+1	reviewed	p.R557H	1.000	117	0%	188	39.9%	1	0%	probably_damaging(0.989)	tolerated(0.16)	deleterious(0.499)	NULL
SLC6A2	6530	genome.wustl.edu	37	16	55719077	55719077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001043.3	+1	reviewed	p.E223K	0.997	85	0%	116	43.1%	0	-	benign(0.004)	tolerated(0.94)	-	HMMPfam_SNF
CES1	1066	genome.wustl.edu	37	16	55846873	55846873	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025195.1	-1	reviewed	p.H343R	0.005	117	0%	136	32.4%	0	-	benign(0)	tolerated(0.09)	neutral(0.296)	HMMPfam_COesterase,superfamily_SSF53474
CES1	1066	genome.wustl.edu	37	16	55862688	55862688	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025195.1	-1	reviewed	p.Y84C	1.000	72	0%	83	27.7%	7	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_COesterase,superfamily_SSF53474
CDH8	1006	genome.wustl.edu	37	16	61761124	61761124	+	Silent	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000394178	-1	known	p.P372	1.000	135	0%	158	49.4%	0	-	-	-	-	HMMSmart_CA,superfamily_Cadherin
ENSG00000250685	0	genome.wustl.edu	37	16	65388176	65388176	+	RNA	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000505989	-1	known	NULL	0.003	351	0%	448	44.2%	0	-	-	-	-	-
CKLF	51192	genome.wustl.edu	37	16	66592128	66592128	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016951.2	+1	reviewed	p.I38	0.006	364	0.3%	449	45.9%	29	13.7%	-	-	-	HMMPfam_MARVEL
CES4A	283848	genome.wustl.edu	37	16	67039259	67039259	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173815.4	+1	validated	p.F399	0.004	47	0%	53	39.6%	3	33.3%	-	-	-	HMMPfam_COesterase,superfamily_SSF53474
ELMO3	79767	genome.wustl.edu	37	16	67234263	67234263	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024712.3	+1	reviewed	p.D191N	1.000	36	0%	50	42%	28	42.8%	benign(0.309)	tolerated(0.58)	neutral(0.102)	NULL
NFAT5	10725	genome.wustl.edu	37	16	69693674	69693674	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138713.2	+1	reviewed	p.E414G	1.000	125	0%	198	41.9%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_p53-like transcription factors,HMMPfam_RHD
DHX38	9785	genome.wustl.edu	37	16	72130873	72130873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014003.3	+1	reviewed	p.S159L	0.097	89	0%	100	48%	24	50%	benign(0.119)	tolerated(0.35)	neutral(0.030)	NULL
DHX38	9785	genome.wustl.edu	37	16	72139999	72139999	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014003.3	+1	reviewed	p.G861	1.000	33	0%	30	43.3%	55	30.9%	-	-	-	HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540
ZFP1	162239	genome.wustl.edu	37	16	75203728	75203728	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153688.2	+1	validated	p.F240	0.598	69	0%	104	56.7%	1	0%	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CNTNAP4	85445	genome.wustl.edu	37	16	76495858	76495858	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138994.3	+1	validated	p.E374K	0.733	233	0%	215	52.1%	0	-	benign(0)	tolerated(0.64)	neutral(0.003)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
CMIP	80790	genome.wustl.edu	37	16	81733327	81733327	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198390.2	+1	validated	p.K559T	1.000	94	1.1%	82	41.5%	24	50%	possibly_damaging(0.84)	tolerated(0.06)	deleterious(0.644)	NULL
ZDHHC7	55625	genome.wustl.edu	37	16	85012811	85012811	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145548.1	-1	validated	p.F211C	1.000	179	0%	226	45.6%	9	33.3%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_zf-DHHC
FOXF1	2294	genome.wustl.edu	37	16	86546582	86546582	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001451.2	+1	reviewed	p.F344C	1.000	30	0%	38	47.4%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLC25A11	8402	genome.wustl.edu	37	17	4841132	4841132	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003562.4	-1	validated	p.T283	0.869	33	0%	38	57.9%	150	47.3%	-	-	-	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
ZFP3	124961	genome.wustl.edu	37	17	4994940	4994940	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153018.2	+1	validated	p.L47	0.000	148	0%	183	51.4%	0	-	-	-	-	NULL
CLDN7	1366	genome.wustl.edu	37	17	7164213	7164213	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001307.5	-1	reviewed	p.T105	0.002	43	0%	40	47.5%	526	53%	-	-	-	HMMPfam_PMP22_Claudin
NEURL4	84461	genome.wustl.edu	37	17	7229597	7229597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032442.2	-1	validated	p.E424K	1.000	70	0%	79	49.4%	20	35%	benign(0.099)	deleterious(0.03)	neutral(0.372)	HMMSmart_SM00588
ACAP1	9744	genome.wustl.edu	37	17	7252364	7252364	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014716.3	+1	validated	p.R577*	1.000	51	0%	52	44.2%	3	0%	-	-	-	NULL
SENP3	26168	genome.wustl.edu	37	17	7466979	7466979	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000321337	+1	known	p.R196W	1.000	8	0.000	8	0.625	8	25%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
TP53	7157	genome.wustl.edu	37	17	7577560	7577560	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000546.4	-1	reviewed	p.S241P	0.999	49	0%	65	43.1%	146	39.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53
TP53	7157	genome.wustl.edu	37	17	7578211	7578211	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000546.4	-1	reviewed	p.R213Q	0.935	131	0%	200	43.5%	101	40.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_p53-like transcription factors,HMMPfam_P53
ALOX12B	242	genome.wustl.edu	37	17	7990724	7990724	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001139.2	-1	reviewed	p.D13N	0.007	47	0%	56	33.9%	0	-	benign(0.104)	tolerated(0.33)	neutral(0.032)	HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase
CCDC42	146849	genome.wustl.edu	37	17	8647444	8647444	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144681.2	-1	validated	p.K48Q	1.000	216	0%	302	44.4%	0	-	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	NULL
WDR16	146845	genome.wustl.edu	37	17	9480029	9480029	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145054.4	+1	validated	p.S6L	0.018	54	0%	72	55.6%	0	-	benign(0)	tolerated(0.3)	neutral(0.029)	NULL
USP43	124739	genome.wustl.edu	37	17	9632174	9632174	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153210.3	+1	validated	p.P1080L	0.000	33	0%	62	54.8%	2	100%	benign(0.032)	deleterious(0)	neutral(0.446)	NULL
PLD6	201164	genome.wustl.edu	37	17	17106266	17106266	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178836.3	-1	validated	p.D192N	0.000	109	0%	145	49.7%	7	42.8%	benign(0.039)	tolerated(0.36)	neutral(0.022)	superfamily_SSF56024
FAM83G	644815	genome.wustl.edu	37	17	18891664	18891664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039999.2	-1	validated	p.G196S	0.980	51	2%	48	41.7%	14	35.7%	benign(0.1)	tolerated(0.37)	neutral(0.026)	HMMPfam_DUF1669,superfamily_Phospholipase D/nuclease
SPECC1	92521	genome.wustl.edu	37	17	20109097	20109097	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033553.1	+1	validated	p.E579K	0.995	79	1.3%	87	47.1%	5	20%	benign(0.334)	deleterious(0.02)	deleterious(0.488)	NULL
SLC13A2	9058	genome.wustl.edu	37	17	26820718	26820718	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003984.3	+1	validated	p.F336	0.256	66	0%	81	16%	0	-	-	-	-	HMMPfam_Na_sulph_symp
NF1	4763	genome.wustl.edu	37	17	29533378	29533378	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042492.2	+1	reviewed	p.R461*	1.000	206	0%	247	40.5%	0	-	-	-	-	NULL
NF1	4763	genome.wustl.edu	37	17	29576111	29576111	+	Nonsense_Mutation	SNP	C	C	T	rs137854560		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042492.2	+1	reviewed	p.R1362*	1.000	131	0%	177	37.9%	0	-	-	-	-	HMMPfam_RasGAP,HMMSmart_SM00323,superfamily_GTPase activation domain GAP
CCT6B	10693	genome.wustl.edu	37	17	33266229	33266229	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006584.2	-1	reviewed	p.R396C	0.998	217	0%	296	50.7%	1	0%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL-intermediate domain like
C17orf66	256957	genome.wustl.edu	37	17	34182182	34182182	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152781.2	-1	validated	p.T533M	0.001	212	0%	297	46.8%	0	-	possibly_damaging(0.763)	deleterious(0.04)	deleterious(0.632)	NULL
SOCS7	30837	genome.wustl.edu	37	17	36533635	36533635	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014598.1	+1	validated	p.K486Q	1.000	150	0%	225	51.6%	1	0%	benign(0.202)	deleterious(0.04)	neutral(0.368)	superfamily_SH2 domain
KRT10	3858	genome.wustl.edu	37	17	38978345	38978345	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000421.3	-1	reviewed	p.R165W	0.029	163	0%	204	43.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Filament
KRT32	3882	genome.wustl.edu	37	17	39623327	39623327	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002278.3	-1	reviewed	p.G84D	0.000	40	2.5%	18	55.6%	0	-	benign(0.064)	tolerated(0.18)	neutral(0.060)	NULL
G6PC	2538	genome.wustl.edu	37	17	41063431	41063431	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000151.2	+1	reviewed	p.K354N	1.000	25	0%	36	55.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
C17orf104	284071	genome.wustl.edu	37	17	42746850	42746850	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145080.2	+1	validated	p.R808C	1.000	119	0%	161	44.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KANSL1	284058	genome.wustl.edu	37	17	44248385	44248385	+	Silent	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015443.2	-1	validated	p.S375	0.027	113	0%	137	12.4%	9	11.1%	-	-	-	NULL
WNT9B	7484	genome.wustl.edu	37	17	44949906	44949906	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003396.1	+1	reviewed	p.T34M	0.996	2	0.000	4	1.000	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
NME1-NME2	654364	genome.wustl.edu	37	17	49248891	49248891	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001018136.1	+1	validated	p.E244*	1.000	144	0%	221	40.7%	1237	38.3%	-	-	-	HMMPfam_NDK,HMMSmart_NDK,superfamily_NDK
KIF2B	84643	genome.wustl.edu	37	17	51901205	51901205	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032559.4	+1	validated	p.D271N	1.000	56	0%	62	43.5%	0	-	probably_damaging(0.973)	tolerated(0.21)	neutral(0.459)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
MPO	4353	genome.wustl.edu	37	17	56355456	56355456	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000250.1	-1	reviewed	p.F312L	1.000	75	0%	72	38.9%	0	-	possibly_damaging(0.687)	tolerated(0.13)	deleterious(0.498)	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
ENSG00000227324	0	genome.wustl.edu	37	17	56738802	56738802	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000453538	-1	known	p.K53	0.998	72	0%	106	50.9%	0	-	-	-	-	HMMPfam_TAP42
SKA2	348235	genome.wustl.edu	37	17	57196814	57196814	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182620.3	-1	validated	p.S55P	1.000	219	0%	306	47.4%	10	20%	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	NULL
TBX2	6909	genome.wustl.edu	37	17	59481813	59481813	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005994.3	+1	validated	p.F281S	1.000	22	0%	16	37.5%	67	32.8%	possibly_damaging(0.742)	deleterious(0)	deleterious(0.717)	HMMPfam_T-box,HMMSmart_SM00425,superfamily_p53-like transcription factors
BRIP1	83990	genome.wustl.edu	37	17	59878764	59878764	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032043.1	-1	reviewed	p.G330	0.009	213	0%	323	48.3%	0	-	-	-	-	HMMSmart_SM00488,HMMPfam_DEAD_2,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
MARCH10	162333	genome.wustl.edu	37	17	60821740	60821740	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100875.1	-1	validated	p.A178T	0.062	70	0%	113	46%	0	-	benign(0.14)	tolerated(0.1)	neutral(0.298)	NULL
CACNG5	27091	genome.wustl.edu	37	17	64880741	64880741	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014404.1	+1	reviewed	p.S178L	0.999	62	0%	83	48.2%	30	53.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PMP22_Claudin
ABCA10	10349	genome.wustl.edu	37	17	67187325	67187325	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080282.3	-1	reviewed	p.K668T	0.574	260	0%	342	43.9%	0	-	benign(0.011)	tolerated(0.13)	neutral(0.253)	NULL
ABCA5	23461	genome.wustl.edu	37	17	67298985	67298985	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018672.3	-1	reviewed	p.E331D	1.000	109	0%	134	44%	0	-	possibly_damaging(0.602)	tolerated(0.06)	deleterious(0.531)	NULL
CD300E	342510	genome.wustl.edu	37	17	72613568	72613568	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181449.1	-1	provisional	p.G26D	0.106	50	0%	54	38.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
RNF157	114804	genome.wustl.edu	37	17	74155617	74155617	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052916.2	-1	validated	p.S368Y	1.000	36	0%	36	36.1%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C1QTNF1	114897	genome.wustl.edu	37	17	77043643	77043643	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030968.2	+1	validated	p.R107*	0.951	6	0.000	12	0.667	1	0%	-	-	-	HMMPfam_Collagen
RNF213	57674	genome.wustl.edu	37	17	78307976	78307976	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000508628	+1	known	p.K1405N	0.022	47	0%	75	45.3%	4	50%	probably_damaging(0.963)	tolerated(0.25)	neutral(0.443)	NULL
RNF213	57674	genome.wustl.edu	37	17	78319965	78319965	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000508628	+1	known	p.N2610	0.000	35	0%	32	34.4%	6	33.3%	-	-	-	NULL
TBCD	6904	genome.wustl.edu	37	17	80895173	80895173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005993.4	+1	reviewed	p.A1073V	0.024	107	0%	106	41.5%	129	46.5%	benign(0.134)	tolerated(0.31)	neutral(0.038)	superfamily_ARM repeat
ENSG00000173213	0	genome.wustl.edu	37	18	48112	48112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000308911	-1	known	p.E205K	1.000	47	0%	53	11.3%	0	-	possibly_damaging(0.845)	deleterious(0)	deleterious(0.768)	HMMPfam_Tubulin,superfamily_Tubulin_FtsZ
SMCHD1	23347	genome.wustl.edu	37	18	2770091	2770091	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015295.2	+1	validated	p.L1651I	0.964	115	0%	172	47.1%	1	100%	benign(0.002)	tolerated(0.49)	neutral(0.011)	NULL
EPB41L3	23136	genome.wustl.edu	37	18	5428399	5428399	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012307.2	-1	provisional	p.R326	0.707	139	0%	159	47.2%	0	-	-	-	-	HMMPfam_FERM_C,superfamily_PH domain-like
LAMA1	284217	genome.wustl.edu	37	18	6986144	6986144	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005559.2	-1	validated	p.E1791*	0.271	151	0%	126	49.2%	1	0%	-	-	-	superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_I
ANKRD12	23253	genome.wustl.edu	37	18	9275635	9275635	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015208.3	+1	validated	p.A1959	0.041	187	0%	201	41.8%	2	50%	-	-	-	superfamily_Ankyrin repeat
PPP4R1	9989	genome.wustl.edu	37	18	9595046	9595046	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042388.1	-1	validated	p.K53T	1.000	197	0%	279	45.2%	5	40%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_ARM repeat
ANKRD30B	374860	genome.wustl.edu	37	18	14852378	14852378	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145029.1	+1	validated	p.E1360*	0.585	35	0%	29	37.9%	0	-	-	-	-	NULL
CHST9	83539	genome.wustl.edu	37	18	24496675	24496675	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031422.4	-1	validated	p.F294V	1.000	117	0%	166	42.2%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_Sulfotransfer_2
ENSG00000249271	0	genome.wustl.edu	37	18	29993177	29993177	+	RNA	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000503999	+1	novel	NULL	0.747	27	3.7%	41	43.9%	64	0%	-	-	-	-
SLC39A6	25800	genome.wustl.edu	37	18	33706236	33706236	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012319.3	-1	validated	p.S245	1.000	107	0%	152	46.7%	0	-	-	-	-	NULL
ELP2	55250	genome.wustl.edu	37	18	33754471	33754471	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018255.1	+1	provisional	p.R783K	0.758	113	0%	177	41.8%	26	30.7%	benign(0)	tolerated(0.94)	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
KIAA1328	57536	genome.wustl.edu	37	18	34415334	34415334	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020776.1	+1	validated	p.E78*	0.245	267	0%	355	38.9%	0	-	-	-	-	NULL
CELF4	56853	genome.wustl.edu	37	18	34839145	34839145	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020180.3	-1	reviewed	p.F444	1.000	39	0%	34	47.1%	0	-	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
EPG5	57724	genome.wustl.edu	37	18	43481127	43481127	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020964.2	-1	validated	p.E1494*	1.000	25	0%	27	40.7%	0	-	-	-	-	NULL
ST8SIA5	29906	genome.wustl.edu	37	18	44260213	44260213	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013305.4	-1	reviewed	p.A308V	1.000	34	0%	34	38.2%	1	100%	probably_damaging(0.999)	tolerated(0.57)	deleterious(0.496)	HMMPfam_Glyco_transf_29
KATNAL2	83473	genome.wustl.edu	37	18	44595594	44595594	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031303.2	+1	validated	p.P205S	1.000	183	0%	265	46%	5	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52540
MYO5B	4645	genome.wustl.edu	37	18	47406795	47406795	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080467.2	-1	reviewed	p.L1026I	0.990	153	0%	276	45.3%	3	66.6%	possibly_damaging(0.796)	tolerated(0.09)	deleterious(0.595)	NULL
DCC	1630	genome.wustl.edu	37	18	50734133	50734133	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005215.3	+1	reviewed	p.R603C	1.000	234	0%	323	46.7%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
POLI	11201	genome.wustl.edu	37	18	51800393	51800393	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007195.2	+1	validated	p.C113	1.000	200	0%	253	43.5%	1	0%	-	-	-	HMMPfam_IMS,superfamily_DNA/RNA polymerases
ST8SIA3	51046	genome.wustl.edu	37	18	55024181	55024181	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015879.2	+1	validated	p.F114V	1.000	120	0%	144	38.2%	0	-	benign(0.021)	tolerated(0.32)	neutral(0.025)	HMMPfam_Glyco_transf_29
NARS	4677	genome.wustl.edu	37	18	55278935	55278935	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004539.3	-1	validated	p.K142N	1.000	105	0%	161	46%	126	43.6%	possibly_damaging(0.534)	deleterious(0.01)	deleterious(0.586)	HMMPfam_tRNA_anti,superfamily_Nucleic_acid_OB
CDH20	28316	genome.wustl.edu	37	18	59212293	59212293	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031891.2	+1	reviewed	p.D522Y	1.000	103	0%	87	43.7%	0	-	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
CDH19	28513	genome.wustl.edu	37	18	64212016	64212016	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021153.2	-1	reviewed	p.S300	0.019	249	0%	289	49.8%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
CDH19	28513	genome.wustl.edu	37	18	64239419	64239419	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021153.2	-1	reviewed	p.R8H	0.000	100	0%	121	47.9%	0	-	benign(0)	tolerated(0.55)	neutral(0.007)	NULL
DSEL	92126	genome.wustl.edu	37	18	65179732	65179732	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032160.2	-1	validated	p.S715Y	1.000	71	0%	99	41.4%	1	100%	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	NULL
DSEL	92126	genome.wustl.edu	37	18	65180101	65180101	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032160.2	-1	validated	p.L592P	0.999	55	0%	77	45.5%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PQLC1	80148	genome.wustl.edu	37	18	77679395	77679395	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025078.4	-1	validated	p.D133N	1.000	24	0%	36	36.1%	148	47.2%	benign(0.056)	tolerated(0.1)	neutral(0.290)	NULL
CREB3L3	84699	genome.wustl.edu	37	19	4171808	4171808	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032607.1	+1	provisional	p.N410H	0.000	10	0%	14	57.1%	0	-	benign(0)	deleterious(0.03)	neutral(0.364)	NULL
CCDC94	55702	genome.wustl.edu	37	19	4247159	4247159	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018074.4	+1	provisional	p.V6I	1.000	182	0%	247	37.2%	2	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_DUF572
SAFB2	9667	genome.wustl.edu	37	19	5604658	5604658	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014649.2	-1	validated	p.E499K	0.994	143	0%	211	44.1%	12	66.6%	benign(0.176)	tolerated(0.49)	neutral(0.027)	superfamily_SSF54928
RANBP3	8498	genome.wustl.edu	37	19	5941690	5941690	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007322.2	-1	reviewed	p.C116	1.000	292	0%	388	37.9%	16	25%	-	-	-	NULL
SLC25A41	284427	genome.wustl.edu	37	19	6430026	6430026	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000458275	-1	known	p.S203L	0.998	36	0%	26	30.8%	0	-	unknown(0)	-	-	NULL
ZNF558	148156	genome.wustl.edu	37	19	8922567	8922567	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144693.1	-1	provisional	p.R200I	1.000	148	0%	190	42.6%	3	33.3%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
MUC16	94025	genome.wustl.edu	37	19	9082700	9082700	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.E3039*	0.027	108	0%	150	44%	1	0%	-	-	-	NULL
OR7D2	162998	genome.wustl.edu	37	19	9297105	9297105	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175883.1	+1	provisional	p.F216L	0.018	135	0%	183	51.9%	0	-	benign(0.343)	tolerated(0.38)	neutral(0.126)	HMMPfam_7tm_1,superfamily_SSF81321
ZNF266	10781	genome.wustl.edu	37	19	9524570	9524570	+	Missense_Mutation	SNP	C	C	T	rs149699312	by1000genomes	TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006631.2	-1	validated	p.R344Q	0.081	82	1.2%	150	40.7%	6	16.6%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF491	126069	genome.wustl.edu	37	19	11917291	11917291	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152356.3	+1	validated	p.R175*	0.001	109	0%	146	52.7%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF878	729747	genome.wustl.edu	37	19	12154972	12154972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080404.1	-1	inferred	p.R462Q	0.041	79	0%	138	45.7%	0	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF878	729747	genome.wustl.edu	37	19	12157497	12157497	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080404.1	-1	inferred	p.L75I	0.597	249	0%	325	42.2%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF136	7695	genome.wustl.edu	37	19	12298480	12298480	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003437.2	+1	validated	p.F429	0.067	94	0%	138	48.6%	1	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
LOC100287841	100287841	genome.wustl.edu	37	19	12358279	12358279	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343641.1	-1	model	p.R479Q	0.998	25	0%	50	42%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF443	10224	genome.wustl.edu	37	19	12541760	12541760	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005815.4	-1	validated	p.R409Q	0.000	196	0%	322	45%	9	55.5%	possibly_damaging(0.452)	tolerated(0.64)	neutral(0.151)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PKN1	5585	genome.wustl.edu	37	19	14562673	14562673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_213560.1	+1	reviewed	p.D341N	0.990	18	0%	23	47.8%	14	35.7%	benign(0.003)	tolerated(0.3)	neutral(0.029)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
CLEC17A	388512	genome.wustl.edu	37	19	14703130	14703130	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000339847	+1	known	p.E79D	0.137	132	0%	190	31.1%	0	-	possibly_damaging(0.741)	-	-	NULL
EPS15L1	58513	genome.wustl.edu	37	19	16497040	16497040	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021235.1	-1	provisional	p.L702	0.999	184	0%	267	39.3%	17	41.1%	-	-	-	NULL
JAK3	3718	genome.wustl.edu	37	19	17937659	17937659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000215.3	-1	reviewed	p.A1090T	0.001	25	0%	46	52.2%	2	50%	benign(0)	tolerated(0.42)	neutral(0.014)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
IL12RB1	3594	genome.wustl.edu	37	19	18186624	18186624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005535.1	-1	reviewed	p.R212Q	0.002	33	0%	27	37%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Fibronectin type III
NCAN	1463	genome.wustl.edu	37	19	19327780	19327780	+	Silent	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004386.2	+1	validated	p.V6	0.910	182	0%	252	45.6%	0	-	-	-	-	NULL
ZNF493	284443	genome.wustl.edu	37	19	21606919	21606919	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001076678.2	+1	validated	p.E486	0.997	40	0%	68	41.2%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF208	7757	genome.wustl.edu	37	19	22157113	22157113	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007153.3	-1	provisional	p.F241L	0.000	71	0%	78	46.2%	0	-	benign(0.002)	tolerated(0.66)	neutral(0.003)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF724P	440519	genome.wustl.edu	37	19	23405974	23405974	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000418100	-1	known	p.R358I	1.000	30	0%	33	66.7%	0	-	benign(0.102)	tolerated(0.29)	neutral(0.037)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF726	730087	genome.wustl.edu	37	19	24116504	24116504	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000322487	+1	known	p.R529M	0.985	29	0%	31	64.5%	0	-	benign(0.17)	tolerated(0.05)	neutral(0.361)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ANKRD27	84079	genome.wustl.edu	37	19	33096837	33096837	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032139.2	-1	validated	p.S799	0.000	145	0%	188	41%	9	33.3%	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ZFP14	57677	genome.wustl.edu	37	19	36832190	36832190	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020917.1	-1	provisional	p.T180A	0.782	135	0.7%	167	40.7%	0	-	benign(0.018)	tolerated(1)	neutral(0.001)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZFP82	284406	genome.wustl.edu	37	19	36884085	36884085	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133466.2	-1	provisional	p.R386I	1.000	111	0%	153	42.5%	3	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF345	25850	genome.wustl.edu	37	19	37368556	37368556	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003419.3	+1	provisional	p.R275Q	0.068	127	1.6%	211	38.9%	0	-	benign(0.02)	tolerated(0.83)	neutral(0.002)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF585B	92285	genome.wustl.edu	37	19	37678073	37678073	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152279.3	-1	validated	p.K122N	0.996	70	0%	117	44.4%	0	-	possibly_damaging(0.712)	tolerated(0.32)	neutral(0.282)	superfamily_SSF57667
ZNF571	51276	genome.wustl.edu	37	19	38056266	38056266	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016536.3	-1	validated	p.R355I	1.000	66	0%	83	37.3%	0	-	probably_damaging(0.983)	tolerated(0.32)	neutral(0.453)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF540	163255	genome.wustl.edu	37	19	38103071	38103071	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152606.3	+1	validated	p.K297T	0.350	86	0%	132	48.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_C2H2 and C2HC zinc fingers
ZNF781	163115	genome.wustl.edu	37	19	38160892	38160892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152605.3	-1	validated	p.R53Q	0.001	115	0%	225	46.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF607	84775	genome.wustl.edu	37	19	38190387	38190387	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032689.4	-1	validated	p.H215	0.844	79	0%	134	36.6%	1	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
WDR87	83889	genome.wustl.edu	37	19	38377061	38377061	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031951.3	-1	provisional	p.G2378D	0.000	144	0%	245	48.2%	0	-	unknown(0)	-	-	NULL
WDR87	83889	genome.wustl.edu	37	19	38379163	38379163	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031951.3	-1	provisional	p.E1677D	0.013	337	0%	364	41.8%	0	-	possibly_damaging(0.741)	-	-	superfamily_WD40 repeat-like,superfamily_ARM repeat
RASGRP4	115727	genome.wustl.edu	37	19	38901579	38901579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170604.2	-1	reviewed	p.R638C	0.001	104	0%	127	48%	0	-	benign(0.179)	tolerated(0.14)	neutral(0.266)	NULL
LGALS14	56891	genome.wustl.edu	37	19	40199884	40199884	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203471.1	+1	reviewed	p.P146	0.003	82	1.2%	111	45.9%	0	-	-	-	-	HMMPfam_Gal-bind_lectin,HMMSmart_GLECT,superfamily_ConA_like_lec_gl
FCGBP	8857	genome.wustl.edu	37	19	40392711	40392711	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003890.2	-1	validated	p.P2598H	0.000	54	0%	92	25%	19	52.6%	unknown(0)	tolerated(0.22)	-	HMMPfam_VWD,HMMSmart_VWD
FCGBP	8857	genome.wustl.edu	37	19	40411823	40411823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003890.2	-1	validated	p.D1269N	0.994	29	0%	38	39.5%	7	0%	probably_damaging(0.999)	tolerated(0.6)	deleterious(0.495)	HMMPfam_VWD,HMMSmart_VWD
ZNF780B	163131	genome.wustl.edu	37	19	40542425	40542425	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005851.2	-1	validated	p.E114A	0.000	175	0%	192	40.1%	0	-	possibly_damaging(0.473)	tolerated(0.33)	neutral(0.180)	NULL
ATP1A3	478	genome.wustl.edu	37	19	42471849	42471849	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152296.3	-1	reviewed	p.P962	0.095	22	0%	17	70.6%	1	0%	-	-	-	HMMPfam_Cation_ATPase_C,superfamily_SSF81665
PSG9	5678	genome.wustl.edu	37	19	43762464	43762464	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002784.3	-1	validated	p.K378T	0.001	296	0%	400	42.7%	0	-	benign(0)	tolerated(0.35)	neutral(0.021)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
ZNF229	7772	genome.wustl.edu	37	19	44934315	44934315	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014518.2	-1	validated	p.K214T	0.001	94	0%	137	39.4%	0	-	benign(0.35)	tolerated(0.44)	neutral(0.123)	NULL
PPM1N	147699	genome.wustl.edu	37	19	46003729	46003729	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080401.1	+1	provisional	p.A358V	0.692	25	0%	37	54.1%	0	-	probably_damaging(0.98)	tolerated(0.18)	deleterious(0.480)	HMMPfam_PP2C_C,superfamily_Protein serine/threonine phosphatase 2C C-terminal domain
GIPR	2696	genome.wustl.edu	37	19	46176122	46176122	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000164.2	+1	validated	p.F98	0.839	169	0%	188	43.1%	0	-	-	-	-	HMMPfam_HRM,HMMSmart_SM00008,superfamily_Hormone receptor domain (HRM Pfam 02793)
ARHGAP35	2909	genome.wustl.edu	37	19	47424921	47424921	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004491.4	+1	reviewed	p.R997*	1.000	26	0%	50	42%	2	0%	-	-	-	NULL
GPR77	27202	genome.wustl.edu	37	19	47844846	47844846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018485.1	+1	provisional	p.A264T	0.000	22	0%	14	35.7%	0	-	benign(0)	tolerated(0.51)	neutral(0.009)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CCDC114	93233	genome.wustl.edu	37	19	48801292	48801292	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144577.3	-1	validated	p.P452	0.000	22	0%	16	56.2%	20	45%	-	-	-	NULL
NUCB1	4924	genome.wustl.edu	37	19	49414486	49414486	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006184.5	+1	reviewed	p.D153N	1.000	45	0%	68	50%	152	42.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GYS1	2997	genome.wustl.edu	37	19	49485596	49485596	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002103.4	-1	reviewed	p.F326L	1.000	56	0%	70	38.6%	14	35.7%	benign(0.002)	deleterious(0)	neutral(0.445)	HMMPfam_Glycogen_syn,superfamily_SSF53756
ZNF473	25888	genome.wustl.edu	37	19	50549052	50549052	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001006656.1	+1	validated	p.R451Q	0.933	51	0%	56	32.1%	7	14.2%	probably_damaging(0.999)	tolerated(0.14)	deleterious(0.740)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SYT3	84258	genome.wustl.edu	37	19	51129177	51129177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032298.2	-1	validated	p.A460V	1.000	44	0%	65	40%	1	0%	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
SIGLEC8	27181	genome.wustl.edu	37	19	51961273	51961273	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014442.2	-1	validated	p.F123L	0.000	130	0%	167	46.1%	0	-	benign(0.338)	deleterious(0.03)	deleterious(0.471)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
SIGLEC6	946	genome.wustl.edu	37	19	52034477	52034477	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001245.5	-1	validated	p.R122W	0.000	81	0%	84	44%	0	-	probably_damaging(0.972)	deleterious(0.02)	deleterious(0.797)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
ZNF649	65251	genome.wustl.edu	37	19	52394376	52394376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023074.3	-1	validated	p.R338Q	0.984	180	0.6%	210	51.4%	32	37.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF649	65251	genome.wustl.edu	37	19	52394460	52394460	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023074.3	-1	validated	p.R310Q	0.014	174	0.6%	203	44.8%	22	40.9%	probably_damaging(0.992)	deleterious(0.02)	deleterious(0.831)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF578	147660	genome.wustl.edu	37	19	53014218	53014218	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099694.1	+1	validated	p.R195I	0.208	154	0%	250	42%	0	-	possibly_damaging(0.696)	tolerated(0.12)	deleterious(0.510)	NULL
ZNF578	147660	genome.wustl.edu	37	19	53014466	53014466	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099694.1	+1	validated	p.R278C	0.032	122	0%	201	46.3%	0	-	unknown(0)	tolerated(0.07)	-	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF578	147660	genome.wustl.edu	37	19	53015124	53015124	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099694.1	+1	validated	p.S497Y	0.000	72	0%	120	45.8%	1	0%	benign(0.011)	tolerated(0.12)	neutral(0.261)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF808	388558	genome.wustl.edu	37	19	53056799	53056799	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039886.3	+1	validated	p.N210K	0.000	338	0%	428	43.5%	0	-	benign(0.067)	tolerated(1)	neutral(0.004)	NULL
ENSG00000245932	0	genome.wustl.edu	37	19	53302457	53302457	+	RNA	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000500436	+1	known	NULL	0.804	50	0%	71	46.5%	0	-	-	-	-	-
ZNF320	162967	genome.wustl.edu	37	19	53384119	53384119	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207333.2	-1	validated	p.K420N	0.002	129	0%	211	45%	7	71.4%	possibly_damaging(0.825)	deleterious(0)	deleterious(0.757)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF677	342926	genome.wustl.edu	37	19	53741032	53741032	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182609.2	-1	provisional	p.E316	1.000	147	0%	198	40.4%	0	-	-	-	-	superfamily_SSF57667
DPRX	503834	genome.wustl.edu	37	19	54137909	54137909	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012728.1	+1	validated	p.S51	0.048	113	0%	181	46.4%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1
NCR1	9437	genome.wustl.edu	37	19	55424096	55424096	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004829.5	+1	validated	p.R258W	0.000	89	0%	103	50.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NLRP13	126204	genome.wustl.edu	37	19	56423388	56423388	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176810.2	-1	validated	p.E599*	0.059	145	0%	201	47.8%	0	-	-	-	-	NULL
NLRP5	126206	genome.wustl.edu	37	19	56511153	56511153	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153447.4	+1	reviewed	p.A21V	0.002	70	0%	127	42.5%	0	-	unknown(0)	deleterious(0)	-	NULL
ZFP28	140612	genome.wustl.edu	37	19	57065632	57065632	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020828.1	+1	provisional	p.R493H	0.002	82	0%	106	40.6%	1	0%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF470	388566	genome.wustl.edu	37	19	57088624	57088624	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001668.3	+1	validated	p.R276I	1.000	92	0%	111	50.5%	2	0%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
USP29	57663	genome.wustl.edu	37	19	57640286	57640286	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020903.2	+1	validated	p.F81L	0.010	90	0%	114	46.5%	0	-	benign(0.424)	tolerated(0.33)	neutral(0.162)	NULL
ZNF264	9422	genome.wustl.edu	37	19	57723746	57723746	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003417.4	+1	reviewed	p.F427	0.004	73	0%	97	50.5%	0	-	-	-	-	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF606	80095	genome.wustl.edu	37	19	58490369	58490369	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025027.3	-1	validated	p.R560I	1.000	108	0.9%	125	36.8%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF132	7691	genome.wustl.edu	37	19	58944929	58944929	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003433.3	-1	validated	p.E628K	0.002	104	1%	154	40.9%	0	-	probably_damaging(0.974)	tolerated(0.77)	neutral(0.417)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
DEFB125	245938	genome.wustl.edu	37	20	76780	76780	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153325.2	+1	reviewed	p.T65A	0.002	110	0%	180	43.3%	0	-	possibly_damaging(0.93)	deleterious(0.04)	deleterious(0.726)	NULL
C20orf96	140680	genome.wustl.edu	37	20	256619	256619	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153269.1	-1	predicted	p.R341W	1.000	84	0%	105	48.6%	95	37.8%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
FASTKD5	60493	genome.wustl.edu	37	20	3127597	3127597	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021826.4	-1	validated	p.Y707C	1.000	82	0%	95	47.4%	22	36.3%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_RAP
C20orf194	25943	genome.wustl.edu	37	20	3356833	3356833	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009984.1	-1	validated	p.E134K	0.998	288	0%	399	48.4%	0	-	probably_damaging(0.954)	deleterious(0.01)	deleterious(0.803)	NULL
RASSF2	9770	genome.wustl.edu	37	20	4764962	4764962	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014737.2	-1	reviewed	p.R313Q	0.979	97	0%	89	40.4%	0	-	benign(0.001)	tolerated(0.61)	neutral(0.004)	NULL
LRRN4	164312	genome.wustl.edu	37	20	6025204	6025204	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152611.3	-1	validated	p.R328I	0.014	39	0%	57	50.9%	4	50%	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	NULL
PLCB1	23236	genome.wustl.edu	37	20	8862337	8862337	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015192.2	+1	reviewed	p.F1164	0.114	115	0%	129	42.6%	1	100%	-	-	-	HMMPfam_PLC-beta_C
JAG1	182	genome.wustl.edu	37	20	10624465	10624465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000214.2	-1	reviewed	p.E807K	1.000	31	0%	47	48.9%	69	23.1%	probably_damaging(0.998)	tolerated(0.13)	deleterious(0.727)	PatternScan_ASX_HYDROXYL,HMMSmart_EGF_CA,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_SSF57196
XRN2	22803	genome.wustl.edu	37	20	21306923	21306923	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012255.3	+1	reviewed	p.E28*	1.000	121	0%	188	43.1%	13	23%	-	-	-	HMMPfam_XRN_N
CST2	1470	genome.wustl.edu	37	20	23804713	23804713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001322.2	-1	reviewed	p.E124K	0.000	120	0%	156	53.8%	0	-	probably_damaging(0.999)	tolerated(0.73)	deleterious(0.492)	HMMPfam_Cystatin,HMMSmart_CY,superfamily_SSF54403
TPX2	22974	genome.wustl.edu	37	20	30381810	30381810	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012112.4	+1	validated	p.E557*	1.000	184	0%	235	40.4%	6	0%	-	-	-	NULL
BPIFB6	128859	genome.wustl.edu	37	20	31625521	31625521	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174897.2	+1	validated	p.H275N	0.007	17	0%	12	41.7%	0	-	benign(0)	tolerated(0.19)	neutral(0.050)	HMMSmart_BPI2,superfamily_Bactericidal_perm-incr_a/b_dom
EIF2S2	8894	genome.wustl.edu	37	20	32681530	32681530	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003908.3	-1	reviewed	p.R231C	1.000	140	0.7%	161	39.8%	19	36.8%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_eIF-5_eIF-2B,HMMSmart_SM00653,superfamily_Translation initiation factor 2 beta aIF2beta N-terminal domain
TTI1	9675	genome.wustl.edu	37	20	36642112	36642112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014657.1	-1	predicted	p.R36Q	0.225	23	0%	33	45.5%	6	33.3%	benign(0.001)	tolerated(0.5)	neutral(0.010)	superfamily_ARM-type_fold
PPP1R16B	26051	genome.wustl.edu	37	20	37536698	37536698	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000438192	+1	known	p.R253Q	0.672	42	0%	40	45%	0	-	-	-	-	NULL
MYBL2	4605	genome.wustl.edu	37	20	42340188	42340188	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002466.2	+1	reviewed	p.E556K	1.000	46	0%	53	39.6%	57	57.8%	probably_damaging(0.959)	deleterious(0.01)	deleterious(0.808)	HMMPfam_Cmyb_C
SEMG2	6407	genome.wustl.edu	37	20	43850418	43850418	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003008.2	+1	reviewed	p.F49V	0.001	159	0%	227	42.7%	0	-	benign(0.055)	tolerated(0.26)	neutral(0.038)	HMMPfam_Semenogelin
SLC12A5	57468	genome.wustl.edu	37	20	44671793	44671793	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134771.1	+1	reviewed	p.E379D	1.000	47	0%	42	14.3%	0	-	benign(0.001)	tolerated(0.71)	neutral(0.002)	HMMPfam_AA_permease
FAM209B	388799	genome.wustl.edu	37	20	55111265	55111265	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013646.2	+1	predicted	p.R96H	0.024	72	0%	81	46.9%	0	-	benign(0)	tolerated(0.15)	neutral(0.241)	NULL
CTCFL	140690	genome.wustl.edu	37	20	56094425	56094425	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080618.2	-1	reviewed	p.G255*	0.006	70	0%	84	21.4%	2	0%	-	-	-	NULL
TAF4	6874	genome.wustl.edu	37	20	60584200	60584200	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003185.3	-1	reviewed	p.N598H	1.000	130	0%	142	47.2%	3	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_TAFH,HMMSmart_TAFH
HRH3	11255	genome.wustl.edu	37	20	60793589	60793589	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007232.2	-1	validated	p.I125	0.986	5	0.000	11	0.818	0	-	-	-	-	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
EEF1A2	1917	genome.wustl.edu	37	20	62129020	62129020	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001958.2	-1	reviewed	p.G33S	1.000	99	0%	109	33%	1	100%	possibly_damaging(0.817)	deleterious(0)	deleterious(0.754)	HMMPfam_GTP_EFTU,superfamily_P-loop containing nucleoside triphosphate hydrolases
TPTE	7179	genome.wustl.edu	37	21	10916378	10916378	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199261.2	-1	validated	p.S423L	0.790	242	0%	329	18.5%	0	-	probably_damaging(0.975)	deleterious(0.04)	deleterious(0.766)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
CXADR	1525	genome.wustl.edu	37	21	18919424	18919424	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001338.3	+1	reviewed	p.C41*	1.000	72	0%	105	44.8%	9	22.2%	-	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
ADAMTS1	9510	genome.wustl.edu	37	21	28214981	28214981	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006988.3	-1	reviewed	p.R252*	1.000	17	0%	27	37%	12	16.6%	-	-	-	NULL
BACH1	571	genome.wustl.edu	37	21	30701851	30701851	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001186.2	+1	reviewed	p.R538Q	1.000	167	0%	196	48.5%	7	71.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_A DNA-binding domain in eukaryotic transcription factors
KRTAP24-1	643803	genome.wustl.edu	37	21	31654544	31654544	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085455.1	-1	validated	p.S236N	0.957	119	0%	133	42.1%	0	-	benign(0.119)	-	-	NULL
KRTAP27-1	643812	genome.wustl.edu	37	21	31709534	31709534	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077711.1	-1	provisional	p.F151	0.135	78	0%	116	47.4%	0	-	-	-	-	HMMPfam_PMG
CHAF1B	8208	genome.wustl.edu	37	21	37769720	37769720	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005441.2	+1	reviewed	p.K163N	0.992	78	0%	95	38.9%	2	50%	possibly_damaging(0.484)	tolerated(0.45)	neutral(0.173)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
ETS2	2114	genome.wustl.edu	37	21	40191467	40191467	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005239.4	+1	validated	p.D284E	1.000	51	0%	55	45.5%	180	41.1%	benign(0.002)	tolerated(1)	-	NULL
HMGN1	3150	genome.wustl.edu	37	21	40715055	40715055	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004965.6	-1	reviewed	p.E96*	1.000	82	0%	131	41.2%	253	46.2%	-	-	-	HMMPfam_HMG14_17
IGSF5	150084	genome.wustl.edu	37	21	41151132	41151132	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080444.1	+1	provisional	p.T278	0.490	147	0%	132	51.5%	0	-	-	-	-	NULL
CBS	875	genome.wustl.edu	37	21	44488683	44488683	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000071.2	-1	reviewed	p.I84	0.793	100	0%	141	39.7%	4	25%	-	-	-	HMMPfam_PALP,superfamily_Tryptophan synthase beta subunit-like PLP-dependent enzymes
TSPEAR	54084	genome.wustl.edu	37	21	45950960	45950960	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144991.2	-1	provisional	p.V200G	0.996	30	0%	30	46.7%	0	-	possibly_damaging(0.816)	deleterious(0)	deleterious(0.753)	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases
LOC100288508	100288508	genome.wustl.edu	37	21	47545416	47545416	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343757.1	-1	model	p.E365K	1.000	17	0%	23	26.1%	443	0.2%	-	-	-	NULL
PCNT	5116	genome.wustl.edu	37	21	47831165	47831165	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006031.5	+1	reviewed	p.E1726D	0.998	38	0%	57	33.3%	0	-	probably_damaging(0.987)	tolerated(0.18)	deleterious(0.492)	NULL
DGCR6	8214	genome.wustl.edu	37	22	18897736	18897736	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005675.4	+1	reviewed	p.R108P	1.000	12	0.000	8	0.750	9	11.1%	possibly_damaging(0.922)	deleterious(0.01)	deleterious(0.777)	HMMPfam_DGCR6
CLTCL1	8218	genome.wustl.edu	37	22	19263299	19263299	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007098.3	-1	reviewed	p.E33K	1.000	72	0%	93	55.9%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Clathrin_propel,superfamily_Clathrin heavy-chain terminal domain
IGLV3-25	28793	genome.wustl.edu	37	22	23029638	23029638	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390305	+1	known	p.F80L	1.000	56	0%	71	43.7%	21	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
MYO18B	84700	genome.wustl.edu	37	22	26422565	26422565	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032608.5	+1	reviewed	p.E2209K	0.001	18	0%	17	52.9%	2	0%	benign(0.139)	deleterious(0.01)	neutral(0.418)	NULL
RFPL1	5988	genome.wustl.edu	37	22	29835041	29835041	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021026.2	+1	validated	p.K87N	0.005	198	0%	246	44.7%	0	-	possibly_damaging(0.902)	tolerated(0.1)	deleterious(0.643)	superfamily_SSF57850
ASCC2	84164	genome.wustl.edu	37	22	30209515	30209515	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032204.3	-1	provisional	p.V246G	0.924	84	0%	141	34.8%	16	62.5%	possibly_damaging(0.888)	deleterious(0)	deleterious(0.792)	NULL
MTMR3	8897	genome.wustl.edu	37	22	30374480	30374480	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021090.3	+1	reviewed	p.F18Y	1.000	53	0%	75	41.3%	1	0%	possibly_damaging(0.94)	tolerated(0.33)	neutral(0.409)	NULL
SEC14L4	284904	genome.wustl.edu	37	22	30890140	30890140	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174977.3	-1	reviewed	p.R193*	0.941	145	0%	185	47%	0	-	-	-	-	HMMPfam_CRAL_TRIO,HMMSmart_SM00516,superfamily_CRAL/TRIO domain
PRR14L	253143	genome.wustl.edu	37	22	32110240	32110240	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173566.2	-1	validated	p.E1195D	0.001	246	0%	377	45.9%	0	-	possibly_damaging(0.602)	tolerated(0.33)	neutral(0.232)	NULL
SYN3	8224	genome.wustl.edu	37	22	33376684	33376684	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003490.3	-1	reviewed	p.S105	0.583	124	0%	170	45.3%	0	-	-	-	-	HMMPfam_Synapsin,superfamily_PreATP-grasp domain
TNRC6B	23112	genome.wustl.edu	37	22	40677281	40677281	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000454349	+1	known	p.F1204	1.000	107	0%	129	45.7%	0	-	-	-	-	NULL
TNRC6B	23112	genome.wustl.edu	37	22	40711975	40711975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015088.2	+1	validated	p.R1535C	1.000	242	0%	390	44.4%	23	30.4%	possibly_damaging(0.733)	deleterious(0)	deleterious(0.713)	superfamily_SSF54928
XPNPEP3	63929	genome.wustl.edu	37	22	41322325	41322325	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022098.2	+1	validated	p.L470	0.855	115	0%	147	46.3%	6	33.3%	-	-	-	HMMPfam_Peptidase_M24,superfamily_Creatinase/aminopeptidase
ACO2	50	genome.wustl.edu	37	22	41907902	41907902	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098.2	+1	reviewed	p.N152T	1.000	55	0%	107	37.4%	9	33.3%	benign(0)	deleterious(0)	neutral(0.445)	HMMPfam_Aconitase,superfamily_Aconitase_N
MEI1	150365	genome.wustl.edu	37	22	42141899	42141899	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152513.3	+1	validated	p.E517*	1.000	70	0%	83	50.6%	0	-	-	-	-	superfamily_ARM repeat
MEI1	150365	genome.wustl.edu	37	22	42180645	42180645	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152513.3	+1	validated	p.R1068Q	0.967	27	0%	27	40.7%	1	100%	benign(0.006)	tolerated(1)	-	NULL
EFCAB6	64800	genome.wustl.edu	37	22	44107498	44107498	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022785.2	-1	validated	p.S296	0.000	103	0%	119	40.3%	0	-	-	-	-	superfamily_EF-hand
BRD1	23774	genome.wustl.edu	37	22	50169321	50169321	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014577.1	-1	reviewed	p.V971M	1.000	30	0%	46	41.3%	72	37.5%	unknown(0)	deleterious(0)	-	HMMSmart_PWWP,superfamily_SSF63748
MOV10L1	54456	genome.wustl.edu	37	22	50598125	50598125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018995.2	+1	reviewed	p.L1079I	1.000	210	0%	282	40.4%	0	-	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ARSF	416	genome.wustl.edu	37	X	3028230	3028230	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004042.3	+1	reviewed	p.E443*	1.000	34	0%	39	41%	0	-	-	-	-	HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like
CLCN4	1183	genome.wustl.edu	37	X	10176253	10176253	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001830.3	+1	reviewed	p.L338V	1.000	60	0%	63	47.6%	1	0%	possibly_damaging(0.575)	deleterious(0.03)	deleterious(0.561)	HMMPfam_Voltage_CLC,superfamily_Clc chloride channel
MSL3	10943	genome.wustl.edu	37	X	11778571	11778571	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_078629.2	+1	reviewed	p.N79H	1.000	119	0%	163	44.2%	9	0%	possibly_damaging(0.862)	deleterious(0.04)	deleterious(0.682)	HMMSmart_SM00298,HMMPfam_MRG
TLR8	51311	genome.wustl.edu	37	X	12938465	12938465	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138636.4	+1	reviewed	p.D436Y	0.000	81	0%	89	46.1%	0	-	possibly_damaging(0.942)	deleterious(0.02)	deleterious(0.770)	NULL
TCEANC	170082	genome.wustl.edu	37	X	13681454	13681454	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152634.2	+1	validated	p.S306Y	0.019	46	0%	56	17.9%	0	-	probably_damaging(0.956)	deleterious(0.02)	deleterious(0.782)	HMMPfam_TFIIS_M
FANCB	2187	genome.wustl.edu	37	X	14882997	14882997	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001018113.1	-1	reviewed	p.F212L	0.026	119	0%	144	39.6%	0	-	possibly_damaging(0.653)	tolerated(0.42)	neutral(0.244)	NULL
ASB9	140462	genome.wustl.edu	37	X	15287989	15287989	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031739.2	-1	reviewed	p.G3D	0.000	86	0%	74	56.8%	3	100%	benign(0.001)	tolerated(0.09)	neutral(0.296)	NULL
BMX	660	genome.wustl.edu	37	X	15564972	15564972	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001721.6	+1	reviewed	p.P575T	1.000	250	0%	320	42.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
RBBP7	5931	genome.wustl.edu	37	X	16871942	16871942	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002893.3	-1	reviewed	p.N207	0.446	167	0.6%	205	39.5%	289	0%	-	-	-	superfamily_WD40 repeat-like
MAP7D2	256714	genome.wustl.edu	37	X	20033442	20033442	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152780.3	-1	validated	p.E509*	1.000	180	0%	228	53.9%	0	-	-	-	-	HMMPfam_MAP7
DDX53	168400	genome.wustl.edu	37	X	23019031	23019031	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182699.2	+1	validated	p.S286F	0.001	63	0%	71	38%	0	-	possibly_damaging(0.753)	deleterious(0.04)	deleterious(0.625)	HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540
POLA1	5422	genome.wustl.edu	37	X	24861700	24861700	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016937.3	+1	reviewed	p.N1312T	0.991	181	0%	273	41.4%	19	0%	benign(0.088)	deleterious(0.03)	neutral(0.371)	HMMPfam_zf-DNA_Pol
LOC392435	392435	genome.wustl.edu	37	X	27850965	27850965	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343800.1	+1	model	p.Q213*	0.177	12	0%	12	58.3%	0	-	-	-	-	HMMPfam_MAGE
DMD	1756	genome.wustl.edu	37	X	32466719	32466719	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004006.2	-1	reviewed	p.V1214L	1.000	252	0%	303	43.9%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
CXorf30	645090	genome.wustl.edu	37	X	36319284	36319284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098843.3	+1	validated	p.D100N	1.000	161	0%	252	42.1%	1	100%	probably_damaging(0.999)	tolerated(0.14)	deleterious(0.740)	NULL
CYBB	1536	genome.wustl.edu	37	X	37670099	37670099	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000397.3	+1	reviewed	p.K548Q	1.000	105	0%	133	51.1%	0	-	benign(0.419)	tolerated(0.21)	neutral(0.180)	HMMPfam_NAD_binding_6,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain
SYTL5	94122	genome.wustl.edu	37	X	37984741	37984741	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138780.2	+1	reviewed	p.R678C	1.000	108	0%	170	37.6%	0	-	probably_damaging(0.996)	tolerated(0.08)	deleterious(0.762)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
ZNF157	7712	genome.wustl.edu	37	X	47270091	47270091	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003446.3	+1	reviewed	p.A71D	0.938	76	0%	127	48%	0	-	possibly_damaging(0.638)	tolerated(0.16)	neutral(0.283)	HMMSmart_KRAB,superfamily_Krueppel-associated_box
CFP	5199	genome.wustl.edu	37	X	47486647	47486647	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145252.1	-1	reviewed	p.R220Q	0.960	68	1.5%	60	60%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1
UXT	8409	genome.wustl.edu	37	X	47517100	47517100	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000376964	-1	known	p.Q87	0.170	110	0%	161	41%	0	-	-	-	-	NULL
SSX5	6758	genome.wustl.edu	37	X	48051744	48051744	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000403001	-1	known	p.R25I	0.000	269	0%	389	41.9%	0	-	possibly_damaging(0.811)	deleterious(0)	deleterious(0.750)	NULL
TBC1D25	4943	genome.wustl.edu	37	X	48417609	48417609	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002536.2	+1	validated	p.P194S	1.000	69	0%	71	56.3%	19	0%	possibly_damaging(0.771)	deleterious(0.01)	deleterious(0.692)	NULL
WDR13	64743	genome.wustl.edu	37	X	48458718	48458718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017883.4	+1	reviewed	p.R179C	1.000	15	0%	12	50%	923	0%	possibly_damaging(0.906)	deleterious(0)	deleterious(0.804)	HMMSmart_SM00320,superfamily_WD40 repeat-like
TIMM17B	10245	genome.wustl.edu	37	X	48751501	48751501	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005834.3	-1	reviewed	p.F66	0.987	38	0%	68	41.2%	234	0%	-	-	-	HMMPfam_Tim17
PQBP1	10084	genome.wustl.edu	37	X	48759872	48759872	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000376548	+1	known	p.D219Y	0.000	35	0%	34	41.2%	7	0%	-	-	-	NULL
OTUD5	55593	genome.wustl.edu	37	X	48783167	48783167	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017602.3	-1	reviewed	p.R412W	0.995	101	0%	109	42.2%	56	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CLCN5	1184	genome.wustl.edu	37	X	49851137	49851137	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127898.1	+1	reviewed	p.L389	0.082	158	0.6%	207	43%	2	100%	-	-	-	HMMPfam_Voltage_CLC,superfamily_Clc chloride channel
SPANXN5	494197	genome.wustl.edu	37	X	52825633	52825633	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009616.2	-1	validated	p.P38	0.044	427	0%	614	43.2%	0	-	-	-	-	HMMPfam_SPAN-X
HUWE1	10075	genome.wustl.edu	37	X	53595725	53595725	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031407.4	-1	reviewed	p.I2212V	1.000	140	0%	197	49.2%	22	0%	benign(0.386)	deleterious(0.03)	deleterious(0.488)	superfamily_ARM repeat
WNK3	65267	genome.wustl.edu	37	X	54263373	54263373	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020922.4	-1	reviewed	p.E1542	1.000	105	0%	140	40%	1	0%	-	-	-	NULL
UBQLN2	29978	genome.wustl.edu	37	X	56590893	56590893	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013444.3	+1	reviewed	p.S196L	1.000	70	1.4%	77	29.9%	8	0%	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	HMMSmart_SM00727
RAB41	347517	genome.wustl.edu	37	X	69502190	69502190	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001032726.2	+1	reviewed	p.S41	0.007	155	0%	213	49.3%	0	-	-	-	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
PDZD11	51248	genome.wustl.edu	37	X	69506958	69506958	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016484.4	-1	validated	p.R133C	1.000	122	0%	126	40.5%	109	0%	possibly_damaging(0.85)	deleterious(0)	deleterious(0.772)	NULL
GDPD2	54857	genome.wustl.edu	37	X	69645920	69645920	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017711.3	+1	reviewed	p.R108W	0.710	124	0%	142	42.3%	0	-	benign(0)	deleterious(0.02)	neutral(0.383)	NULL
DLG3	1741	genome.wustl.edu	37	X	69670545	69670545	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021120.3	+1	reviewed	p.K299	1.000	34	0%	54	40.7%	0	-	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
TAF1	6872	genome.wustl.edu	37	X	70595062	70595062	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004606.3	+1	reviewed	p.C153F	1.000	371	0%	508	42.1%	1	0%	benign(0)	tolerated(0.05)	neutral(0.345)	NULL
TAF1	6872	genome.wustl.edu	37	X	70612782	70612782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004606.3	+1	reviewed	p.R1017C	1.000	223	0.4%	297	41.8%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NHSL2	340527	genome.wustl.edu	37	X	71359377	71359377	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013627.2	+1	provisional	p.G294V	1.000	38	0%	48	54.2%	2	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
ATRX	546	genome.wustl.edu	37	X	76829736	76829736	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000489.3	-1	reviewed	p.F2102C	1.000	266	0%	371	46.1%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
MAGT1	84061	genome.wustl.edu	37	X	77150841	77150841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032121.5	-1	reviewed	p.D55N	0.001	64	0%	78	55.1%	27	0%	benign(0.009)	tolerated(0.63)	neutral(0.004)	HMMPfam_OST3_OST6
CYSLTR1	10800	genome.wustl.edu	37	X	77528660	77528660	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006639.2	-1	reviewed	p.F195C	0.963	141	0%	198	46.5%	0	-	benign(0.055)	deleterious(0.01)	neutral(0.409)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
P2RY10	27334	genome.wustl.edu	37	X	78216325	78216325	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014499.2	+1	reviewed	p.R103I	0.000	137	0%	153	54.9%	0	-	benign(0.314)	tolerated(0.17)	neutral(0.157)	HMMPfam_7tm_1,superfamily_SSF81321
GPR174	84636	genome.wustl.edu	37	X	78426783	78426783	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032553.1	+1	validated	p.F93	0.998	158	0%	188	37.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
BRWD3	254065	genome.wustl.edu	37	X	79999581	79999581	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153252.4	-1	reviewed	p.A255S	1.000	109	0%	125	38.4%	0	-	probably_damaging(0.995)	tolerated(0.23)	deleterious(0.499)	HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMPfam_WD40
POU3F4	5456	genome.wustl.edu	37	X	82764246	82764246	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000307.3	+1	reviewed	p.A305V	1.000	14	0%	24	50%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
DACH2	117154	genome.wustl.edu	37	X	85404096	85404096	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053281.3	+1	reviewed	p.D158N	1.000	53	0%	37	37.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ski_Sno,superfamily_Putative DNA-binding domain
KLHL4	56062	genome.wustl.edu	37	X	86887422	86887422	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_057162.2	+1	reviewed	p.R513W	1.000	162	0%	228	47.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
DIAPH2	1730	genome.wustl.edu	37	X	96684721	96684721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006729.4	+1	reviewed	p.R1073Q	1.000	128	0%	150	45.3%	1	0%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	NULL
PCDH19	57526	genome.wustl.edu	37	X	99663214	99663214	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105243.1	-1	reviewed	p.S128G	1.000	63	0%	40	35%	6	0%	benign(0.205)	tolerated(0.06)	neutral(0.343)	superfamily_Cadherin
XKRX	402415	genome.wustl.edu	37	X	100183177	100183177	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_212559.2	-1	reviewed	p.F52L	1.000	124	0%	194	42.3%	0	-	possibly_damaging(0.945)	tolerated(0.77)	neutral(0.391)	NULL
BHLHB9	80823	genome.wustl.edu	37	X	102005452	102005452	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142524.1	+1	validated	p.F510S	1.000	159	0%	201	49.3%	0	-	possibly_damaging(0.839)	deleterious(0)	deleterious(0.765)	HMMPfam_DUF634,superfamily_ARM-type_fold
GLRA4	441509	genome.wustl.edu	37	X	102979043	102979043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024452.2	-1	validated	p.R153C	1.000	97	0%	129	45.7%	0	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
MID2	11043	genome.wustl.edu	37	X	107084209	107084209	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012216.3	+1	reviewed	p.R105H	1.000	39	0%	49	55.1%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_RING/U-box
IRS4	8471	genome.wustl.edu	37	X	107976744	107976744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003604.2	-1	reviewed	p.S944L	0.001	175	0%	268	48.5%	0	-	benign(0.002)	deleterious(0.01)	neutral(0.406)	NULL
IRS4	8471	genome.wustl.edu	37	X	107979287	107979287	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003604.2	-1	reviewed	p.F96	1.000	13	0.000	9	0.556	0	-	-	-	-	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
LOC203510	203510	genome.wustl.edu	37	X	111933439	111933439	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001723892.1	+1	model	p.F99L	1.000	14	0%	20	55%	0	-	-	-	-	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box
LOC286528	286528	genome.wustl.edu	37	X	113625521	113625521	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_210501.3	+1	model	p.R132Q	1.000	20	0%	38	42.1%	0	-	-	-	-	HMMPfam_Ssu72
IL13RA2	3598	genome.wustl.edu	37	X	114242567	114242567	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000640.2	-1	reviewed	p.R309G	0.987	535	0%	760	45.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_FN_III-like
LRCH2	57631	genome.wustl.edu	37	X	114357648	114357648	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020871.3	-1	validated	p.R653C	1.000	284	0%	324	46.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology
DOCK11	139818	genome.wustl.edu	37	X	117714128	117714128	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144658.3	+1	validated	p.F527	1.000	109	0%	103	12.6%	2	0%	-	-	-	NULL
KIAA1210	57481	genome.wustl.edu	37	X	118215299	118215299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020721.1	-1	validated	p.T1708M	0.000	125	0%	135	41.5%	0	-	benign(0.009)	tolerated(0.34)	neutral(0.024)	NULL
KIAA1210	57481	genome.wustl.edu	37	X	118220782	118220782	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020721.1	-1	validated	p.D1471Y	0.000	150	0%	160	35%	0	-	probably_damaging(0.982)	-	-	NULL
SEPT6	23157	genome.wustl.edu	37	X	118763445	118763445	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015129.5	-1	reviewed	p.K372	1.000	185	0%	286	44.8%	2	0%	-	-	-	NULL
UPF3B	65109	genome.wustl.edu	37	X	118975122	118975122	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080632.1	-1	reviewed	p.R242*	1.000	822	0%	1222	42.6%	0	-	-	-	-	NULL
RHOXF2B	727940	genome.wustl.edu	37	X	119209878	119209878	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099685.1	-1	provisional	p.E175A	0.004	271	0%	379	25.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1
ZBTB33	10009	genome.wustl.edu	37	X	119388859	119388859	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006777.3	+1	reviewed	p.V530A	1.000	77	0%	97	55.7%	6	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CUL4B	8450	genome.wustl.edu	37	X	119691832	119691832	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003588.3	-1	reviewed	p.E225K	1.000	558	0%	666	42.9%	0	-	benign(0)	tolerated(0.87)	neutral(0.001)	HMMPfam_Cullin,superfamily_Cullin repeat
THOC2	57187	genome.wustl.edu	37	X	122846745	122846745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081550.1	-1	validated	p.R29W	0.999	247	0%	328	40.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ODZ1	10178	genome.wustl.edu	37	X	123554194	123554194	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014253.3	-1	reviewed	p.K1643T	1.000	66	0%	92	43.5%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_RHS_repeat,superfamily_N2O_reductase_N
ODZ1	10178	genome.wustl.edu	37	X	123870939	123870939	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014253.3	-1	reviewed	p.S215F	1.000	118	0%	128	44.5%	0	-	benign(0.002)	deleterious(0)	neutral(0.445)	HMMPfam_Ten_N
ACTRT1	139741	genome.wustl.edu	37	X	127185804	127185804	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138289.3	-1	reviewed	p.E128*	1.000	148	0%	169	49.1%	0	-	-	-	-	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067
UTP14A	10813	genome.wustl.edu	37	X	129060041	129060041	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006649.3	+1	reviewed	p.G632	1.000	151	0%	231	43.7%	6	0%	-	-	-	HMMPfam_Utp14
ZNF280C	55609	genome.wustl.edu	37	X	129364607	129364607	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017666.4	-1	validated	p.K289T	1.000	263	0%	365	41.9%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
USP26	83844	genome.wustl.edu	37	X	132160340	132160340	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031907.1	-1	reviewed	p.E637*	0.000	143	0%	231	38.1%	0	-	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
GPC4	2239	genome.wustl.edu	37	X	132445386	132445386	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001448.2	-1	reviewed	p.G259	0.006	141	0%	182	19.2%	31	0%	-	-	-	HMMPfam_Glypican,PatternScan_GLYPICAN
MIR363	574031	genome.wustl.edu	37	X	133303464	133303464	+	RNA	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000384840	-1	known	NULL	1.000	69	0%	95	46.3%	0	-	-	-	-	-
LOC728470	728470	genome.wustl.edu	37	X	134326940	134326940	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343844.1	-1	model	p.S56	0.001	138	0.7%	171	43.3%	0	-	-	-	-	NULL
MAP7D3	79649	genome.wustl.edu	37	X	135318441	135318441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024597.3	-1	reviewed	p.S233L	0.001	326	0%	349	40.1%	1	0%	benign(0.242)	deleterious(0.04)	neutral(0.373)	NULL
MCF2	4168	genome.wustl.edu	37	X	138699762	138699762	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099855.1	-1	reviewed	p.L363	0.732	219	0%	322	39.4%	0	-	-	-	-	HMMSmart_SPEC,superfamily_Spectrin
ATP11C	286410	genome.wustl.edu	37	X	138864759	138864759	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000422228	-1	known	p.S188L	1.000	222	0%	284	46.1%	0	-	-	-	-	superfamily_Metal cation-transporting ATPase ATP-binding domain N
CXorf66	347487	genome.wustl.edu	37	X	139038331	139038331	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013403.2	-1	validated	p.K270N	0.002	179	0%	266	44.7%	0	-	possibly_damaging(0.45)	deleterious(0)	deleterious(0.592)	NULL
FMR1	2332	genome.wustl.edu	37	X	147014094	147014094	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002024.5	+1	reviewed	p.T261A	1.000	261	0%	358	45%	0	-	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
FMR1NB	158521	genome.wustl.edu	37	X	147063029	147063029	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152578.2	+1	validated	p.S36L	0.000	44	0%	48	43.8%	0	-	possibly_damaging(0.873)	deleterious(0)	deleterious(0.784)	NULL
IDS	3423	genome.wustl.edu	37	X	148579713	148579713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000202.5	-1	reviewed	p.K211N	1.000	92	0%	96	35.4%	16	81.2%	benign(0.004)	tolerated(0.29)	neutral(0.029)	HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like
MTM1	4534	genome.wustl.edu	37	X	149783119	149783119	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000252.2	+1	reviewed	p.G97*	1.000	252	0%	334	41%	0	-	-	-	-	HMMPfam_GRAM,HMMSmart_GRAM,superfamily_SSF50729
MAGEA12	4111	genome.wustl.edu	37	X	151900363	151900363	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005367.5	-1	reviewed	p.F146	0.001	178	0%	236	41.1%	0	-	-	-	-	HMMPfam_MAGE
FAM58A	92002	genome.wustl.edu	37	X	152861584	152861584	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000276345	-1	known	p.F56L	1.000	158	0.6%	202	49%	28	82.1%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_CYCLIN,superfamily_Cyclin_like
TKTL1	8277	genome.wustl.edu	37	X	153533757	153533757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012253.3	+1	validated	p.R79Q	1.000	96	0%	132	40.9%	0	-	benign(0.001)	deleterious(0.04)	neutral(0.349)	superfamily_Thiamin diphosphate-binding fold (THDP-binding)
GAB3	139716	genome.wustl.edu	37	X	153908408	153908408	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081573.1	-1	reviewed	e9+1	1.000	96	0%	129	38%	0	-	-	-	-	-
F8	2157	genome.wustl.edu	37	X	154158405	154158405	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000132.3	-1	reviewed	p.K1220N	0.000	113	0%	117	44.4%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
VAMP7	6845	genome.wustl.edu	37	X	155119226	155119226	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16Y-01A-31D-A12J-09	TCGA-D1-A16Y-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005638.4	+1	validated	p.L33	1.000	338	0%	498	44.6%	14	0%	-	-	-	superfamily_SNARE-like
