Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
MTOR	2475	genome.wustl.edu	37	1	11188173	11188173	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004958.3	-1	reviewed	p.Y1974C	1.000	58	0%	82	48.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM-type_fold
NRD1	4898	genome.wustl.edu	37	1	52269496	52269496	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002525.2	-1	validated	p.H836L	1.000	74	0%	87	47.1%	-	-	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	superfamily_Metalloenz_metal-bd
CRYZ	1429	genome.wustl.edu	37	1	75190458	75190458	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130042.1	-1	reviewed	p.F16fs	1.000	-	-	-	-	-	-	-	-	-	superfamily_GroES_like
COL11A1	1301	genome.wustl.edu	37	1	103477987	103477987	+	Silent	SNP	A	A	T	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080629.2	-1	reviewed	p.T549	0.999	29	0%	39	51.3%	-	-	-	-	-	HMMPfam_Collagen
TARS2	80222	genome.wustl.edu	37	1	150477198	150477198	+	Silent	SNP	C	C	T	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025150.3	+1	provisional	p.C603	0.993	55	0%	71	33.8%	-	-	-	-	-	superfamily_Anticodon_bd,superfamily_SSF55681
RUSC1-AS1	284618	genome.wustl.edu	37	1	155290888	155290888	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039517.1	-1	predicted	p.S131T	0.235	54	0%	103	31.1%	-	-	-	-	-	NULL
PRCC	5546	genome.wustl.edu	37	1	156756693	156756693	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005973.4	+1	reviewed	p.E270D	1.000	16	0%	31	25.8%	-	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	NULL
PELI1	57162	genome.wustl.edu	37	2	64322229	64322229	+	Silent	SNP	T	T	A	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020651.3	-1	validated	p.T288	0.999	32	0%	56	16.1%	-	-	-	-	-	HMMPfam_Pellino
CNNM4	26504	genome.wustl.edu	37	2	97427705	97427705	+	Silent	SNP	C	C	G	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020184.3	+1	reviewed	p.L323	1.000	85	0%	114	51.8%	-	-	-	-	-	HMMPfam_DUF21
ATF2	1386	genome.wustl.edu	37	2	175994883	175994883	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001880.2	-1	reviewed	p.A29S	1.000	39	2.6%	53	37.7%	-	-	unknown(0)	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers
TTC30A	92104	genome.wustl.edu	37	2	178481938	178481938	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152275.3	-1	validated	p.A498T	1.000	140	0%	181	36.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF48452
PDE11A	50940	genome.wustl.edu	37	2	178704998	178704998	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016953.3	-1	reviewed	p.D494N	1.000	68	0%	93	38.7%	-	-	possibly_damaging(0.861)	tolerated(0.35)	neutral(0.354)	HMMPfam_GAF,HMMSmart_SM00065,superfamily_GAF domain-like
TTN	7273	genome.wustl.edu	37	2	179483188	179483188	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.V13098A	1.000	44	0%	59	47.5%	-	-	benign(0.099)	-	-	HMMPfam_fn3,HMMSmart_SM00060
CRYGC	1420	genome.wustl.edu	37	2	208994335	208994335	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020989.3	-1	reviewed	p.P28A	0.828	35	0%	57	26.3%	-	-	benign(0.001)	tolerated(0.18)	neutral(0.056)	HMMPfam_Crystall,HMMSmart_SM00247,superfamily_gamma-Crystallin-like
PDZRN3	23024	genome.wustl.edu	37	3	73432965	73432965	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015009.1	-1	provisional	p.R918C	0.022	19	0%	23	47.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
POLQ	10721	genome.wustl.edu	37	3	121200578	121200578	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199420.3	-1	validated	p.P2018T	0.597	35	0%	66	27.3%	-	-	possibly_damaging(0.489)	tolerated(0.27)	neutral(0.196)	superfamily_Ribonuclease H-like
CCRL1	51554	genome.wustl.edu	37	3	132319275	132319275	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016557.2	+1	reviewed	p.Y12H	0.992	49	0%	67	35.8%	-	-	benign(0.001)	tolerated(0.51)	neutral(0.009)	superfamily_SSF81321
PIK3CA	5290	genome.wustl.edu	37	3	178921553	178921553	+	Missense_Mutation	SNP	T	T	A	rs121913284		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.N345K	1.000	40	0%	66	65.2%	-	-	probably_damaging(1)	tolerated(0.23)	deleterious(0.541)	HMMSmart_C2,HMMSmart_PI3K_C2,superfamily_C2_CaLB
CC2D2A	57545	genome.wustl.edu	37	4	15529273	15529273	+	Silent	SNP	T	T	A	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080522.2	+1	reviewed	p.T451	0.565	34	0%	94	24.5%	-	-	-	-	-	NULL
LGI2	55203	genome.wustl.edu	37	4	25020787	25020787	+	Splice_Site	SNP	A	A	C	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018176.3	-1	validated	e5+2	1.000	65	0%	172	25.6%	-	-	-	-	-	-
SLC4A4	8671	genome.wustl.edu	37	4	72332230	72332230	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134742.1	+1	reviewed	p.L523V	1.000	138	0.7%	166	38.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HCO3_cotransp
MAB21L2	10586	genome.wustl.edu	37	4	151504984	151504984	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006439.4	+1	reviewed	p.P268L	1.000	14	0%	18	94.4%	-	-	benign(0.02)	tolerated(0.2)	neutral(0.050)	HMMPfam_Mab-21
TRIO	7204	genome.wustl.edu	37	5	14498739	14498739	+	Silent	SNP	G	G	A	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007118.2	+1	validated	p.L2774	1.000	42	0%	71	36.6%	-	-	-	-	-	HMMSmart_SM00409,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,superfamily_Immunoglobulin
HEATR7B2	133558	genome.wustl.edu	37	5	41047852	41047852	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173489.4	-1	validated	p.T567A	0.001	63	0%	133	22.6%	-	-	benign(0)	tolerated(0.61)	neutral(0.004)	superfamily_ARM repeat
PCDHGB3	56102	genome.wustl.edu	37	5	140751474	140751474	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018924.2	+1	reviewed	p.V505M	0.044	11	0.000	7	0.857	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB5	56101	genome.wustl.edu	37	5	140779056	140779059	+	Frame_Shift_Del	DEL	AGTC	AGTC	-	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	AGTC	AGTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018925.2	+1	reviewed	p.S456fs	0.000:0.058:0.028:0.001	-	-	-	-	-	-	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin-like
WWC1	23286	genome.wustl.edu	37	5	167857151	167857151	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015238.2	+1	reviewed	p.E670D	0.998	29	0%	18	83.3%	-	-	benign(0)	tolerated(0.59)	neutral(0.004)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
ECI2	10455	genome.wustl.edu	37	6	4130615	4130615	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006117.2	-1	validated	p.I134M	0.000	128	0%	181	42%	-	-	benign(0.003)	deleterious(0.02)	neutral(0.383)	HMMPfam_ECH,superfamily_SSF52096
BACH2	60468	genome.wustl.edu	37	6	90660034	90660034	+	Silent	SNP	C	C	T	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021813.2	-1	validated	p.S597	0.885	31	0%	34	47.1%	-	-	-	-	-	NULL
SYNE1	23345	genome.wustl.edu	37	6	152469439	152469439	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.H8239Q	0.889	34	0%	59	37.3%	-	-	benign(0)	tolerated(0.36)	neutral(0.020)	NULL
ENSG00000248675	0	genome.wustl.edu	37	7	10489596	10489605	+	RNA	DEL	ATGGGAAGAT	ATGGGAAGAT	-	rs36213657	byCluster;by1000genomes	TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	ATGGGAAGAT	ATGGGAAGAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000510654	-1	known	NULL	0.029:0.037:0.043:0.047:0.048:0.048:0.046:0.042:0.044:0.044	-	-	-	-	-	-	-	-	-	-
IL6	3569	genome.wustl.edu	37	7	22767194	22767194	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000600.3	+1	reviewed	p.E51Q	0.000	56	0%	78	23.1%	-	-	possibly_damaging(0.686)	tolerated(0.09)	deleterious(0.541)	superfamily_4-helical cytokines
AKAP9	10142	genome.wustl.edu	37	7	91706193	91706193	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005751.4	+1	reviewed	p.E2213Q	1.000	24	0%	35	28.6%	-	-	probably_damaging(0.996)	tolerated(0.05)	deleterious(0.807)	NULL
MYOM2	9172	genome.wustl.edu	37	8	2000389	2000389	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003970.2	+1	validated	p.R74P	0.248	41	0%	24	70.8%	-	-	possibly_damaging(0.916)	tolerated(0.1)	deleterious(0.653)	NULL
HNF4G	3174	genome.wustl.edu	37	8	76456149	76456149	+	Silent	SNP	C	C	T	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004133.4	+1	validated	p.S64	0.173	66	0%	140	28.6%	-	-	-	-	-	HMMPfam_zf-C4,HMMSmart_ZnF_C4,PatternScan_NUCLEAR_REC_DBD_1,superfamily_SSF57716
MMP16	4325	genome.wustl.edu	37	8	89180156	89180156	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005941.4	-1	reviewed	p.A151S	1.000	62	0%	118	22.9%	-	-	probably_damaging(0.996)	tolerated(0.1)	deleterious(0.748)	"HMMPfam_Peptidase_M10,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain"
COL22A1	169044	genome.wustl.edu	37	8	139890254	139890254	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152888.1	-1	validated	p.A133T	0.319	6	0.000	5	0.800	-	-	unknown(0)	tolerated(0.27)	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
PTK2	5747	genome.wustl.edu	37	8	141889676	141889676	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005607.3	-1	reviewed	p.R108C	1.000	61	0%	142	14.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_B41
DBH	1621	genome.wustl.edu	37	9	136508630	136508630	+	Silent	SNP	C	C	T	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000787.3	+1	reviewed	p.S280	0.974	16	0.000	7	0.571	-	-	-	-	-	HMMPfam_Cu2_monooxygen,superfamily_PHM_PNGase_F
FAM208B	54906	genome.wustl.edu	37	10	5789058	5789058	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017782.4	+1	validated	p.S1225L	0.004	27	0%	37	56.8%	-	-	benign(0.176)	tolerated(0.12)	neutral(0.277)	NULL
SVIL	6840	genome.wustl.edu	37	10	29779927	29779927	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021738.2	-1	reviewed	p.E1347D	1.000	36	0%	33	24.2%	-	-	probably_damaging(0.972)	tolerated(0.05)	deleterious(0.759)	NULL
PARD3	56288	genome.wustl.edu	37	10	34630560	34630560	+	Silent	SNP	G	G	A	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019619.3	-1	validated	p.A804	0.998	39	0%	57	43.9%	-	-	-	-	-	NULL
JMJD1C	221037	genome.wustl.edu	37	10	64974235	64974235	+	Silent	SNP	G	G	A	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032776.1	-1	validated	p.S564	0.324	49	0%	54	61.1%	-	-	-	-	-	NULL
EIF3A	8661	genome.wustl.edu	37	10	120810135	120810135	+	Silent	SNP	A	A	G	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003750.2	-1	validated	p.L791	0.932	171	0%	214	41.1%	-	-	-	-	-	NULL
CDHR5	53841	genome.wustl.edu	37	11	619503	619503	+	Silent	SNP	G	G	A	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021924.4	-1	reviewed	p.L422	0.005	37	0%	66	60.6%	-	-	-	-	-	superfamily_Cadherin-like
OR5M9	390162	genome.wustl.edu	37	11	56230147	56230147	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004743.1	-1	provisional	p.T244M	0.085	36	0%	44	38.6%	-	-	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	HMMPfam_7tm_1,superfamily_SSF81321
C11orf84	144097	genome.wustl.edu	37	11	63586118	63586118	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138471.1	+1	predicted	p.D243H	0.083	26	0%	45	28.9%	-	-	possibly_damaging(0.937)	deleterious(0)	deleterious(0.828)	NULL
SF1	7536	genome.wustl.edu	37	11	64535304	64535304	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004630.3	-1	reviewed	p.T361S	0.996	19	0%	35	42.9%	-	-	benign(0.05)	tolerated(0.23)	neutral(0.045)	NULL
KCNA6	3742	genome.wustl.edu	37	12	4920105	4920105	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002235.3	+1	reviewed	p.D300N	1.000	42	0%	44	52.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_SSF81324
PZP	5858	genome.wustl.edu	37	12	9315208	9315208	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002864.2	-1	validated	p.M925V	0.001	97	0%	110	13.6%	-	-	benign(0)	tolerated(0.05)	neutral(0.345)	NULL
ERBB3	2065	genome.wustl.edu	37	12	56481922	56481922	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001982.2	+1	reviewed	p.G284R	1.000	44	0%	69	44.9%	-	-	probably_damaging(0.999)	tolerated(0.19)	deleterious(0.540)	HMMPfam_Furin-like,superfamily_Growth factor receptor domain
SHISA2	387914	genome.wustl.edu	37	13	26620919	26620919	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007538.1	-1	provisional	p.C207F	1.000	65	0%	66	53%	-	-	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	NULL
SLC15A1	6564	genome.wustl.edu	37	13	99361825	99361825	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005073.3	-1	reviewed	e14+1	1.000	54	0%	86	10.5%	-	-	-	-	-	-
ADPRHL1	113622	genome.wustl.edu	37	13	114107655	114107655	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138430.3	-1	validated	p.I33T	1.000	30	0%	43	34.9%	-	-	benign(0.001)	deleterious(0)	neutral(0.445)	HMMPfam_ADP_ribosyl_GH,superfamily_ADP-ribosylglycohydrolase
C14orf135	64430	genome.wustl.edu	37	14	60582515	60582515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022495.5	+1	validated	p.G245E	1.000	136	0%	146	50%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RHOJ	57381	genome.wustl.edu	37	14	63735856	63735856	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020663.3	+1	provisional	p.H69Q	0.980	55	0%	43	72.1%	-	-	possibly_damaging(0.708)	deleterious(0.01)	deleterious(0.661)	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
IGHV4-61	28391	genome.wustl.edu	37	14	107095414	107095414	+	Silent	SNP	C	C	T	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390630	-1	known	p.Q22	1.000	97	0%	43	41.9%	-	-	-	-	-	HMMPfam_V-set,superfamily_SSF48726
DUOXA2	405753	genome.wustl.edu	37	15	45409492	45409492	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207581.3	+1	reviewed	p.T253K	1.000	14	0.000	5	0.800	-	-	possibly_damaging(0.741)	deleterious(0.04)	deleterious(0.621)	HMMPfam_DuoxA
FBN1	2200	genome.wustl.edu	37	15	48755306	48755306	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000138.4	-1	reviewed	p.C1733S	1.000	46	0%	35	57.1%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_TB,superfamily_TB module/8-cys domain,superfamily_Concanavalin A-like lectins/glucanases
PIGB	9488	genome.wustl.edu	37	15	55642980	55642980	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004855.4	+1	reviewed	p.T403S	1.000	71	0%	64	79.7%	-	-	probably_damaging(0.979)	deleterious(0.02)	deleterious(0.805)	HMMPfam_Glyco_transf_22
TCF12	6938	genome.wustl.edu	37	15	57543557	57543557	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207036.1	+1	reviewed	p.Q375R	1.000	54	0%	59	16.9%	-	-	probably_damaging(0.991)	tolerated(0.09)	deleterious(0.740)	NULL
ZSCAN10	84891	genome.wustl.edu	37	16	3141575	3141575	+	Silent	SNP	C	C	A	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032805.1	-1	provisional	p.V196	0.005	26	0%	24	70.8%	-	-	-	-	-	NULL
NLRC5	84166	genome.wustl.edu	37	16	57095843	57095846	+	Frame_Shift_Del	DEL	AAAG	AAAG	-	rs142124514	byCluster;by1000genomes	TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	AAAG	AAAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000327982	+1	known	p.K1096fs	0.005:0.002:0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
CBFB	865	genome.wustl.edu	37	16	67100701	67100701	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022845.2	+1	reviewed	p.Q133H	1.000	91	0%	66	72.7%	-	-	possibly_damaging(0.457)	tolerated(0.08)	neutral(0.450)	HMMPfam_CBF_beta,superfamily_CBF_beta
SPG7	6687	genome.wustl.edu	37	16	89590168	89590169	+	Frame_Shift_Ins	INS	-	-	ATCTC	rs113476208	byCluster;by1000genomes	TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000312632	+1	known	p.R23fs	0.007:0.005	-	-	-	-	-	-	-	-	-	NULL
FAM101B	359845	genome.wustl.edu	37	17	293184	293184	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182705.2	-1	validated	p.V70L	0.998	32	0%	29	69%	-	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
TNK1	8711	genome.wustl.edu	37	17	7288035	7288035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003985.3	+1	validated	p.R367W	1.000	11	0.000	6	1.000	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
TP53	7157	genome.wustl.edu	37	17	7578406	7578406	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000546.4	-1	reviewed	p.R175H	1.000	25	0%	21	81%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_p53-like transcription factors,HMMPfam_P53
STH	246744	genome.wustl.edu	37	17	44076873	44076873	+	Silent	SNP	T	T	C	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007532.2	+1	validated	p.S76	0.000	45	0%	80	28.7%	-	-	-	-	-	NULL
USP32	84669	genome.wustl.edu	37	17	58343369	58343369	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032582.3	-1	validated	p.V299F	1.000	44	0%	65	44.6%	-	-	benign(0.229)	deleterious(0.01)	neutral(0.429)	superfamily_SSF47473
DDX42	11325	genome.wustl.edu	37	17	61883905	61883905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007372.2	+1	reviewed	p.A246V	1.000	48	0%	84	45.2%	-	-	benign(0.015)	tolerated(0.55)	neutral(0.007)	superfamily_P-loop containing nucleoside triphosphate hydrolases
CLUL1	27098	genome.wustl.edu	37	18	624940	624940	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014410.4	+1	validated	p.D111H	0.234	39	0%	67	38.8%	-	-	possibly_damaging(0.806)	tolerated(0.12)	deleterious(0.564)	HMMPfam_Clusterin,HMMSmart_CLb
SAFB2	9667	genome.wustl.edu	37	19	5604916	5604916	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014649.2	-1	validated	p.R443H	1.000	20	0%	30	76.7%	-	-	possibly_damaging(0.925)	deleterious(0)	deleterious(0.818)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
SMARCA4	6597	genome.wustl.edu	37	19	11105674	11105674	+	Silent	SNP	C	C	G	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128849.1	+1	reviewed	p.L530	1.000	29	0%	35	42.9%	-	-	-	-	-	HMMPfam_HSA,HMMSmart_HSA,superfamily_SSF52540
MAST3	23031	genome.wustl.edu	37	19	18254804	18254804	+	Silent	SNP	C	C	A	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015016.1	+1	validated	p.P828	0.125	14	0%	22	27.3%	-	-	-	-	-	NULL
ZNF529	57711	genome.wustl.edu	37	19	37038306	37038306	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145649.1	-1	validated	p.Q385R	0.993	38	0%	44	18.2%	-	-	possibly_damaging(0.809)	tolerated(0.19)	neutral(0.354)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PLD3	23646	genome.wustl.edu	37	19	40873684	40873684	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031696.2	+1	validated	p.W109*	1.000	18	0%	26	50%	-	-	-	-	-	superfamily_SSF56024
PSG1	5669	genome.wustl.edu	37	19	43383712	43383712	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006905.2	-1	validated	p.P8A	0.000	68	0%	114	38.6%	-	-	possibly_damaging(0.604)	tolerated(0.18)	neutral(0.266)	HMMPfam_V-set
CRX	1406	genome.wustl.edu	37	19	48342969	48342969	+	Missense_Mutation	SNP	C	C	A	rs191794330	by1000genomes	TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000554.4	+1	reviewed	p.F215L	1.000	28	0%	44	15.9%	-	-	benign(0.278)	deleterious(0.03)	neutral(0.394)	NULL
SIGLEC5	8778	genome.wustl.edu	37	19	52129335	52129335	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003830.2	-1	validated	p.R472*	0.001	73	0%	52	76.9%	-	-	-	-	-	NULL
ZNFX1	57169	genome.wustl.edu	37	20	47887505	47887505	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021035.2	-1	validated	p.A282S	1.000	56	0%	101	49.5%	-	-	benign(0.056)	tolerated(0.16)	neutral(0.063)	NULL
SYCP2	10388	genome.wustl.edu	37	20	58450513	58450513	+	Silent	SNP	G	G	A	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014258.2	-1	reviewed	p.I1054	0.563	89	0%	106	40.6%	-	-	-	-	-	NULL
TPTE	7179	genome.wustl.edu	37	21	10970032	10970032	+	Silent	SNP	G	G	A	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199261.2	-1	validated	p.T32	0.000	207	0%	277	20.2%	-	-	-	-	-	NULL
SGSM1	129049	genome.wustl.edu	37	22	25280032	25280032	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039948.2	+1	validated	p.C558F	1.000	28	0%	104	76.9%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
ZNF41	7592	genome.wustl.edu	37	X	47307375	47307375	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007130.2	-1	reviewed	p.Q598H	1.000	57	0%	90	44.4%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
GLOD5	392465	genome.wustl.edu	37	X	48631847	48631847	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080489.2	+1	validated	p.S157W	0.004	34	0%	59	20.3%	-	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
HUWE1	10075	genome.wustl.edu	37	X	53627127	53627127	+	Silent	SNP	G	G	A	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000427052	-1	known	p.H72Y	0.664	80	0%	100	58%	-	-	-	-	-	NULL
FAM123B	139285	genome.wustl.edu	37	X	63412982	63412982	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152424.3	-1	reviewed	p.G62D	1.000	120	0%	145	27.6%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
PDZD11	51248	genome.wustl.edu	37	X	69507630	69507630	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016484.4	-1	validated	p.Q93H	1.000	79	0%	98	41.8%	-	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
TAF1	6872	genome.wustl.edu	37	X	70617204	70617204	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004606.3	+1	reviewed	p.R1190C	1.000	75	0%	106	45.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LOC392555	392555	genome.wustl.edu	37	X	141261778	141261778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343852.1	-1	model	p.V77I	0.014	15	0%	20	55%	-	-	-	-	-	NULL
SLITRK4	139065	genome.wustl.edu	37	X	142717469	142717476	+	Frame_Shift_Del	DEL	TTAGGAGA	TTAGGAGA	-	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	TTAGGAGA	TTAGGAGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173078.3	-1	reviewed	p.N483fs	1.000:0.999:0.998:0.663:0.654:0.996:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
SLITRK2	84631	genome.wustl.edu	37	X	144904949	144904949	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144003.2	+1	reviewed	p.V336L	1.000	36	0%	41	41.5%	-	-	benign(0.002)	tolerated(0.24)	neutral(0.037)	NULL
GABRA3	2556	genome.wustl.edu	37	X	151532943	151532943	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000808.3	-1	reviewed	p.R34*	1.000	93	0%	119	36.1%	-	-	-	-	-	NULL
OPN1LW	5956	genome.wustl.edu	37	X	153416178	153416178	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A1NU-01A-11D-A14G-09	TCGA-D1-A1NU-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020061.4	+1	reviewed	p.L55F	0.973	66	0%	96	12.5%	-	-	benign(0.002)	deleterious(0.03)	neutral(0.364)	superfamily_SSF81321
