Extract Name	Hybridization Name	Data File	Comment [TCGA Archive Name]	Comment [TCGA Data Level]	Comment [TCGA Include for Analysis]	Protocol REF	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
TCGA-BT-A20U-11A-11D-A14Z-05	TCGA-BT-A20U-11A-11D-A14Z-05	jhu-usc.edu_BLCA.HumanMethylation450.3.lvl-3.TCGA-BT-A20U-11A-11D-A14Z-05.txt	jhu-usc.edu_BLCA.HumanMethylation450.Level_3.3.7.0	Level_3	yes	broad.mit.edu:mirror_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:29	Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data_2012122100	BLCA-NORMALS.methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.data.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BLCA-NORMALS.Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.Level_3.2012122100.0.0	yes
TCGA-GD-A3OP-11A-11D-A223-05	TCGA-GD-A3OP-11A-11D-A223-05	jhu-usc.edu_BLCA.HumanMethylation450.11.lvl-3.TCGA-GD-A3OP-11A-11D-A223-05.txt	jhu-usc.edu_BLCA.HumanMethylation450.Level_3.11.7.0	Level_3	yes	broad.mit.edu:mirror_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:29	Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data_2012122100	BLCA-NORMALS.methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.data.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BLCA-NORMALS.Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.Level_3.2012122100.0.0	yes
TCGA-BT-A20X-11A-12D-A16P-05	TCGA-BT-A20X-11A-12D-A16P-05	jhu-usc.edu_BLCA.HumanMethylation450.4.lvl-3.TCGA-BT-A20X-11A-12D-A16P-05.txt	jhu-usc.edu_BLCA.HumanMethylation450.Level_3.4.7.0	Level_3	yes	broad.mit.edu:mirror_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:29	Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data_2012122100	BLCA-NORMALS.methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.data.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BLCA-NORMALS.Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.Level_3.2012122100.0.0	yes
TCGA-BT-A2LA-11A-11D-A18G-05	TCGA-BT-A2LA-11A-11D-A18G-05	jhu-usc.edu_BLCA.HumanMethylation450.6.lvl-3.TCGA-BT-A2LA-11A-11D-A18G-05.txt	jhu-usc.edu_BLCA.HumanMethylation450.Level_3.6.7.0	Level_3	yes	broad.mit.edu:mirror_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:29	Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data_2012122100	BLCA-NORMALS.methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.data.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BLCA-NORMALS.Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.Level_3.2012122100.0.0	yes
TCGA-BT-A20N-11A-11D-A14Z-05	TCGA-BT-A20N-11A-11D-A14Z-05	jhu-usc.edu_BLCA.HumanMethylation450.3.lvl-3.TCGA-BT-A20N-11A-11D-A14Z-05.txt	jhu-usc.edu_BLCA.HumanMethylation450.Level_3.3.7.0	Level_3	yes	broad.mit.edu:mirror_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:29	Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data_2012122100	BLCA-NORMALS.methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.data.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BLCA-NORMALS.Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.Level_3.2012122100.0.0	yes
TCGA-GC-A3WC-11A-11D-A231-05	TCGA-GC-A3WC-11A-11D-A231-05	jhu-usc.edu_BLCA.HumanMethylation450.9.lvl-3.TCGA-GC-A3WC-11A-11D-A231-05.txt	jhu-usc.edu_BLCA.HumanMethylation450.Level_3.9.7.0	Level_3	yes	broad.mit.edu:mirror_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:29	Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data_2012122100	BLCA-NORMALS.methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.data.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BLCA-NORMALS.Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.Level_3.2012122100.0.0	yes
TCGA-CU-A0YR-11A-13D-A10W-05	TCGA-CU-A0YR-11A-13D-A10W-05	jhu-usc.edu_BLCA.HumanMethylation450.1.lvl-3.TCGA-CU-A0YR-11A-13D-A10W-05.txt	jhu-usc.edu_BLCA.HumanMethylation450.Level_3.1.7.0	Level_3	yes	broad.mit.edu:mirror_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:29	Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data_2012122100	BLCA-NORMALS.methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.data.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BLCA-NORMALS.Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.Level_3.2012122100.0.0	yes
TCGA-GD-A2C5-11A-11D-A17Y-05	TCGA-GD-A2C5-11A-11D-A17Y-05	jhu-usc.edu_BLCA.HumanMethylation450.5.lvl-3.TCGA-GD-A2C5-11A-11D-A17Y-05.txt	jhu-usc.edu_BLCA.HumanMethylation450.Level_3.5.7.0	Level_3	yes	broad.mit.edu:mirror_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:29	Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data_2012122100	BLCA-NORMALS.methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.data.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BLCA-NORMALS.Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.Level_3.2012122100.0.0	yes
TCGA-BT-A20V-11A-11D-A14Z-05	TCGA-BT-A20V-11A-11D-A14Z-05	jhu-usc.edu_BLCA.HumanMethylation450.3.lvl-3.TCGA-BT-A20V-11A-11D-A14Z-05.txt	jhu-usc.edu_BLCA.HumanMethylation450.Level_3.3.7.0	Level_3	yes	broad.mit.edu:mirror_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:29	Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data_2012122100	BLCA-NORMALS.methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.data.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BLCA-NORMALS.Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.Level_3.2012122100.0.0	yes
TCGA-GC-A3BM-11A-11D-A231-05	TCGA-GC-A3BM-11A-11D-A231-05	jhu-usc.edu_BLCA.HumanMethylation450.9.lvl-3.TCGA-GC-A3BM-11A-11D-A231-05.txt	jhu-usc.edu_BLCA.HumanMethylation450.Level_3.9.7.0	Level_3	yes	broad.mit.edu:mirror_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:29	Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data_2012122100	BLCA-NORMALS.methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.data.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BLCA-NORMALS.Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.Level_3.2012122100.0.0	yes
TCGA-BT-A20J-11A-11D-A14Z-05	TCGA-BT-A20J-11A-11D-A14Z-05	jhu-usc.edu_BLCA.HumanMethylation450.3.lvl-3.TCGA-BT-A20J-11A-11D-A14Z-05.txt	jhu-usc.edu_BLCA.HumanMethylation450.Level_3.3.7.0	Level_3	yes	broad.mit.edu:mirror_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:29	Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data_2012122100	BLCA-NORMALS.methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.data.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BLCA-NORMALS.Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.Level_3.2012122100.0.0	yes
TCGA-BL-A13J-11A-13D-A10W-05	TCGA-BL-A13J-11A-13D-A10W-05	jhu-usc.edu_BLCA.HumanMethylation450.1.lvl-3.TCGA-BL-A13J-11A-13D-A10W-05.txt	jhu-usc.edu_BLCA.HumanMethylation450.Level_3.1.7.0	Level_3	yes	broad.mit.edu:mirror_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:29	Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data_2012122100	BLCA-NORMALS.methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.data.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BLCA-NORMALS.Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.Level_3.2012122100.0.0	yes
TCGA-GD-A3OQ-11A-21D-A223-05	TCGA-GD-A3OQ-11A-21D-A223-05	jhu-usc.edu_BLCA.HumanMethylation450.11.lvl-3.TCGA-GD-A3OQ-11A-21D-A223-05.txt	jhu-usc.edu_BLCA.HumanMethylation450.Level_3.11.7.0	Level_3	yes	broad.mit.edu:mirror_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:29	Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data_2012122100	BLCA-NORMALS.methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.data.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BLCA-NORMALS.Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.Level_3.2012122100.0.0	yes
TCGA-BT-A20W-11A-11D-A14Z-05	TCGA-BT-A20W-11A-11D-A14Z-05	jhu-usc.edu_BLCA.HumanMethylation450.3.lvl-3.TCGA-BT-A20W-11A-11D-A14Z-05.txt	jhu-usc.edu_BLCA.HumanMethylation450.Level_3.3.7.0	Level_3	yes	broad.mit.edu:mirror_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:29	Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data_2012122100	BLCA-NORMALS.methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.data.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BLCA-NORMALS.Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.Level_3.2012122100.0.0	yes
TCGA-CU-A0YN-11A-11D-A10W-05	TCGA-CU-A0YN-11A-11D-A10W-05	jhu-usc.edu_BLCA.HumanMethylation450.1.lvl-3.TCGA-CU-A0YN-11A-11D-A10W-05.txt	jhu-usc.edu_BLCA.HumanMethylation450.Level_3.1.7.0	Level_3	yes	broad.mit.edu:mirror_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:29	Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data_2012122100	BLCA-NORMALS.methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.data.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BLCA-NORMALS.Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.Level_3.2012122100.0.0	yes
TCGA-K4-A3WV-11A-21D-A231-05	TCGA-K4-A3WV-11A-21D-A231-05	jhu-usc.edu_BLCA.HumanMethylation450.9.lvl-3.TCGA-K4-A3WV-11A-21D-A231-05.txt	jhu-usc.edu_BLCA.HumanMethylation450.Level_3.9.7.0	Level_3	yes	broad.mit.edu:mirror_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:29	Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data_2012122100	BLCA-NORMALS.methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.data.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BLCA-NORMALS.Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.Level_3.2012122100.0.0	yes
TCGA-BT-A20R-11A-11D-A16P-05	TCGA-BT-A20R-11A-11D-A16P-05	jhu-usc.edu_BLCA.HumanMethylation450.4.lvl-3.TCGA-BT-A20R-11A-11D-A16P-05.txt	jhu-usc.edu_BLCA.HumanMethylation450.Level_3.4.7.0	Level_3	yes	broad.mit.edu:mirror_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:29	Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data_2012122100	BLCA-NORMALS.methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.data.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BLCA-NORMALS.Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.Level_3.2012122100.0.0	yes
TCGA-BT-A20P-11A-11D-A14Z-05	TCGA-BT-A20P-11A-11D-A14Z-05	jhu-usc.edu_BLCA.HumanMethylation450.3.lvl-3.TCGA-BT-A20P-11A-11D-A14Z-05.txt	jhu-usc.edu_BLCA.HumanMethylation450.Level_3.3.7.0	Level_3	yes	broad.mit.edu:mirror_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:29	Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data_2012122100	BLCA-NORMALS.methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.data.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BLCA-NORMALS.Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.Level_3.2012122100.0.0	yes
