Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ARHGAP23	57636	genome.wustl.edu	37	17	36626102	36626102	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	36626102	36626102	G	A	SNP	ARHGAP23	NM_020876	human	genbank	57_37b	+1	provisional	missense	c.1649	p.R550H	0.760	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors
ATN1	1822	genome.wustl.edu	37	12	7045461	7045461	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	7045461	7045461	C	T	SNP	ATN1	NM_001007026	human	genbank	57_37b	+1	reviewed	missense	c.1031	p.P344L	0.995	HMMPfam_Atrophin-1	HMMPfam_Atrophin-1	-	no_errors
C20orf72	92667	genome.wustl.edu	37	20	17970619	17970619	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	17970619	17970619	G	A	SNP	C20orf72	ENST00000377704	human	ensembl	57_37b	+1	known	nonsense	c.549	p.W183*	1.000	NULL	NULL	-	no_errors
C9orf114	51490	genome.wustl.edu	37	9	131587304	131587304	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	131587304	131587304	C	G	SNP	C9orf114	NM_016390	human	genbank	57_37b	-1	validated	missense	c.664	p.E222Q	1.000	superfamily_SSF75217,HMMPfam_DUF171,superfamily_Nucleic_acid_OB	superfamily_SSF75217,HMMPfam_DUF171,superfamily_Nucleic_acid_OB	-	no_errors
CARD10	29775	genome.wustl.edu	37	22	37912135	37912135	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	37912135	37912135	G	A	SNP	CARD10	NM_014550	human	genbank	57_37b	-1	reviewed	nonsense	c.544	p.Q182*	0.992	NULL	superfamily_DEATH_like,HMMPfam_CARD,superfamily_SSF52540	-	no_errors
CEP135	9662	genome.wustl.edu	37	4	56883874	56883874	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	56883874	56883874	C	T	SNP	CEP135	NM_025009	human	genbank	57_37b	+1	validated	nonsense	c.2863	p.R955*	0.970	superfamily_Prefoldin	superfamily_Prefoldin	-	no_errors
DKFZp434L192	0	genome.wustl.edu	37	7	56564210	56564210	+	RNA	SNP	C	C	T	rs10281482	byCluster;by1000genomes	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	56564210	56564210	C	T	SNP	DKFZp434L192	NR_026929	human	genbank	57_37b	+1	predicted	rna	NULL	NULL	0.012	-	-	-	
ENOX2	10495	genome.wustl.edu	37	X	129769019	129769019	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	129769019	129769019	A	C	SNP	ENOX2	NM_182314	human	genbank	57_37b	-1	reviewed	missense	c.1445	p.L482R	1.000	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors
ENSG00000211513	0	genome.wustl.edu	37	19	47212593	47212593	+	RNA	SNP	A	A	G	rs10423365	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	47212593	47212593	A	G	SNP	ENSG00000211513	ENST00000390179	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	0.509	-	-	-	
ENSG00000232429	0	genome.wustl.edu	37	19	34080511	34080511	+	Silent	SNP	G	G	C	rs12609032	byCluster;byFrequency;byHapMap	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	34080511	34080511	G	C	SNP	ENSG00000232429	ENST00000418275	human	ensembl	57_37b	-1	known	silent	c.84	p.A28	1.000	HMMPfam_Ribosomal_L21e,superfamily_Translation proteins SH3-like domain	HMMPfam_Ribosomal_L21e,superfamily_Translation proteins SH3-like domain	-	
HDX	139324	genome.wustl.edu	37	X	83723943	83723943	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	83723943	83723943	C	T	SNP	HDX	NM_144657	human	genbank	57_37b	-1	provisional	missense	c.788	p.R263H	1.000	NULL	HMMSmart_SM00389,superfamily_Homeodomain-like,HMMPfam_Homeobox	-	no_errors
KLF14	136259	genome.wustl.edu	37	7	130418344	130418344	+	Missense_Mutation	SNP	C	C	G	rs35770036	byCluster;byFrequency;by1000genomes	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	130418344	130418344	C	G	SNP	KLF14	NM_138693	human	genbank	57_37b	-1	reviewed	missense	c.517	p.A173P	0.005	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	
KLK12	43849	genome.wustl.edu	37	19	51535184	51535184	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	51535184	51535184	G	A	SNP	KLK12	NM_019598	human	genbank	57_37b	-1	reviewed	silent	c.405	p.T135	0.000	superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin	superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
LOC100287541	0	genome.wustl.edu	37	22	18842988	18842988	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	18842988	18842988	G	T	SNP	LOC100287541	XM_002344189	human	genbank	57_37b	+1	model	missense	c.104	p.C35F	0.003	NULL	PatternScan_PHOSPHOPANTETHEINE	-	no_errors
MDM2	4193	genome.wustl.edu	37	12	69233129	69233129	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	69233129	69233129	C	T	SNP	MDM2	NM_002392	human	genbank	57_37b	+1	reviewed	missense	c.994	p.R332C	1.000	HMMPfam_zf-RanBP	superfamily_SWIB/MDM2 domain,HMMPfam_SWIB,HMMPfam_zf-RanBP,PatternScan_ZF_RANBP2_1,superfamily_RING/U-box	-	no_errors
MEP1A	4224	genome.wustl.edu	37	6	46803035	46803035	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	46803035	46803035	G	A	SNP	MEP1A	NM_005588	human	genbank	57_37b	+1	validated	silent	c.1833	p.L611	0.000	NULL	PatternScan_EGF_1,PatternScan_EGF_2,superfamily_SSF55486,HMMSmart_ZnMc,HMMPfam_Astacin,PatternScan_ZINC_PROTEASE,HMMSmart_MAM,HMMPfam_MAM,PatternScan_MAM_1,superfamily_Traf_like,HMMSmart_MATH,HMMPfam_MATH,superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF	-	no_errors
MRC2	9902	genome.wustl.edu	37	17	60765922	60765922	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	60765922	60765922	C	A	SNP	MRC2	NM_006039	human	genbank	57_37b	+1	validated	nonsense	c.3122	p.S1041*	0.866	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C	superfamily_Ricin B-like lectins,HMMSmart_SM00458,HMMPfam_Ricin_B_lectin,superfamily_Kringle-like,HMMSmart_SM00059,HMMPfam_fn2,PatternScan_FN2_1,superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1,PatternScan_LIPOCALIN	-	no_errors
POFUT2	23275	genome.wustl.edu	37	21	46705636	46705636	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	46705636	46705636	G	A	SNP	POFUT2	NM_133635	human	genbank	57_37b	-1	validated	silent	c.339	p.L113	0.998	HMMPfam_O-FucT	HMMPfam_O-FucT	-	no_errors
PYGB	5834	genome.wustl.edu	37	20	25252034	25252034	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	25252034	25252034	C	T	SNP	PYGB	NM_002862	human	genbank	57_37b	+1	reviewed	missense	c.440	p.S147L	1.000	superfamily_SSF53756,HMMPfam_Phosphorylase	superfamily_SSF53756,HMMPfam_Phosphorylase,PatternScan_PHOSPHORYLASE	-	no_errors
REV1	51455	genome.wustl.edu	37	2	100046338	100046338	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	100046338	100046338	G	C	SNP	REV1	NM_016316	human	genbank	57_37b	-1	reviewed	nonsense	c.1511	p.S504*	1.000	superfamily_DNA/RNA polymerases,HMMPfam_IMS	HMMPfam_BRCT,superfamily_BRCT domain,HMMSmart_SM00292,superfamily_DNA/RNA polymerases,HMMPfam_IMS,superfamily_Lesion bypass DNA polymerase (Y-family) little finger domain	-	no_errors
SCN2A	6326	genome.wustl.edu	37	2	166179704	166179704	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	166179704	166179704	A	T	SNP	SCN2A	NM_001040142	human	genbank	57_37b	+1	reviewed	missense	c.1710	p.R570S	1.000	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,HMMSmart_SM00015,HMMPfam_IQ	-	no_errors
SHROOM3	57619	genome.wustl.edu	37	4	77662486	77662486	+	Missense_Mutation	SNP	G	G	A	rs71607374	byCluster;byFrequency;by1000genomes	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	77662486	77662486	G	A	SNP	SHROOM3	NM_020859	human	genbank	57_37b	+1	validated	missense	c.3160	p.V1054M	0.994	HMMPfam_ASD1	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMPfam_ASD1,HMMPfam_ASD2	-	
SLC2A2	6514	genome.wustl.edu	37	3	170736326	170736326	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	170736326	170736326	A	G	SNP	SLC2A2	NM_000340	human	genbank	57_37b	-1	reviewed	silent	c.102	p.P34	0.991	superfamily_MFS_gen_substrate_transporter,HMMPfam_Sugar_tr	superfamily_MFS_gen_substrate_transporter,HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_2,PatternScan_SUGAR_TRANSPORT_1	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7577120	7577120	+	Missense_Mutation	SNP	C	A	C	rs28934576	unknown	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	C	C						Unknown	Unknown	Phase_IV	Capture			1	Illumina GAIIx	Illumina GAIIx	17	7577120	7577120	C	T	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.818	p.R273H	0.864	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-
TPPP2	122664	genome.wustl.edu	37	14	21500171	21500171	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	21500171	21500171	A	G	SNP	TPPP2	NM_173846	human	genbank	57_37b	+1	validated	missense	c.448	p.T150A	0.006	HMMPfam_p25-alpha	HMMPfam_p25-alpha	-	no_errors
ZC3H12C	85463	genome.wustl.edu	37	11	110035921	110035921	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CL-01A-11D-A10Y-09	TCGA-A2-A0CL-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	110035921	110035921	C	T	SNP	ZC3H12C	NM_033390	human	genbank	57_37b	+1	validated	missense	c.2111	p.P704L	0.176	NULL	NULL	-	no_errors
