Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ABCA4	24	genome.wustl.edu	37	1	94543428	94543428	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	94543428	94543428	G	T	SNP	ABCA4	NM_000350	human	genbank	57_37b	-1	reviewed	missense	c.1372	p.P458T	1.000	NULL	superfamily_SSF52540,HMMSmart_AAA,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors
ABCA6	23460	genome.wustl.edu	37	17	67094096	67094096	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	67094096	67094096	G	C	SNP	ABCA6	NM_080284	human	genbank	57_37b	-1	reviewed	missense	c.3085	p.P1029A	0.981	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran	-	no_errors
ABCC12	94160	genome.wustl.edu	37	16	48167699	48167699	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	48167699	48167699	G	T	SNP	ABCC12	NM_033226	human	genbank	57_37b	-1	reviewed	missense	c.1027	p.Q343K	1.000	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors
ABCD1	215	genome.wustl.edu	37	X	152991542	152991542	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	152991542	152991542	G	A	SNP	ABCD1	NM_000033	human	genbank	57_37b	+1	reviewed	missense	c.821	p.R274Q	0.553	HMMPfam_ABC_membrane_2	HMMPfam_ABC_membrane_2,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors
ABHD11	83451	genome.wustl.edu	37	7	73151593	73151593	+	Silent	SNP	A	A	T	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	73151593	73151593	A	T	SNP	ABHD11	NM_148912	human	genbank	57_37b	-1	reviewed	silent	c.591	p.R197	0.000	superfamily_alpha/beta-Hydrolases,HMMPfam_Abhydrolase_1	superfamily_alpha/beta-Hydrolases,HMMPfam_Abhydrolase_1	-	no_errors
ACSM5	54988	genome.wustl.edu	37	16	20442397	20442397	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	20442397	20442397	T	C	SNP	ACSM5	NM_017888	human	genbank	57_37b	+1	validated	splice_site	c.1206+2	e8+2	1.000	-	-	-	no_errors
ADAMTS19	171019	genome.wustl.edu	37	5	128863507	128863507	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	128863507	128863507	C	G	SNP	ADAMTS19	NM_133638	human	genbank	57_37b	+1	reviewed	missense	c.1135	p.L379V	1.000	"superfamily_Metalloproteases (""zincins"") catalytic domain"	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMSmart_SM00608,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_PLAC"	-	no_errors
ADAMTS2	9509	genome.wustl.edu	37	5	178585812	178585812	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	178585812	178585812	G	A	SNP	ADAMTS2	NM_014244	human	genbank	57_37b	-1	reviewed	silent	c.1044	p.L348	1.000	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin"	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1"	-	no_errors
ADAMTS6	11174	genome.wustl.edu	37	5	64748724	64748724	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	64748724	64748724	G	T	SNP	ADAMTS6	NM_197941	human	genbank	57_37b	-1	reviewed	missense	c.653	p.P218H	1.000	NULL	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,HMMPfam_PLAC"	-	no_errors
ADSL	158	genome.wustl.edu	37	22	40746017	40746017	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	40746017	40746017	C	A	SNP	ADSL	NM_000026	human	genbank	57_37b	+1	reviewed	missense	c.335	p.S112Y	1.000	superfamily_L-aspartase-like,HMMPfam_Lyase_1	superfamily_L-aspartase-like,HMMPfam_Lyase_1,PatternScan_FUMARATE_LYASES,HMMPfam_ADSL_C	-	no_errors
AGL	178	genome.wustl.edu	37	1	100330007	100330007	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	100330007	100330007	G	C	SNP	AGL	NM_000028	human	genbank	57_37b	+1	reviewed	missense	c.526	p.A176P	1.000	superfamily_(Trans)glycosidases	superfamily_(Trans)glycosidases,HMMPfam_GDE_C,superfamily_Six-hairpin glycosidases	-	no_errors
AGT	183	genome.wustl.edu	37	1	230845794	230845794	+	Missense_Mutation	SNP	A	G	G	rs699	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	230845794	230845794	A	G	SNP	AGT	NM_000029	human	genbank	57_37b	-1	reviewed	missense	c.803	p.M268T	0.000	superfamily_Serpins,HMMPfam_Serpin,HMMSmart_SM00093	superfamily_Serpins,HMMPfam_Serpin,HMMSmart_SM00093,PatternScan_SERPIN	-	
AHCTF1	25909	genome.wustl.edu	37	1	247067282	247067282	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	247067282	247067282	T	A	SNP	AHCTF1	NM_015446	human	genbank	57_37b	-1	validated	missense	c.935	p.K312M	1.000	NULL	PatternScan_TUBULIN_B_AUTOREG,HMMPfam_AT_hook,HMMSmart_AT_hook	-	no_errors
AKAP6	9472	genome.wustl.edu	37	14	33293160	33293160	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	33293160	33293160	T	A	SNP	AKAP6	NM_004274	human	genbank	57_37b	+1	reviewed	missense	c.6141	p.H2047Q	1.000	NULL	HMMSmart_SM00150,superfamily_Spectrin repeat,PatternScan_PFKB_KINASES_2	-	no_errors
ALK	238	genome.wustl.edu	37	2	29432670	29432675	+	In_Frame_Del	DEL	ATCCCG	ATCCCG	-	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	ATCCCG	ATCCCG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	29432670	29432675	ATCCCG	-	DEL	ALK	NM_004304	human	genbank	57_37b	-1	reviewed	in_frame_del	c.3818_3813	p.FGM1271in_frame_delL	1.000:1.000:0.873:1.000:1.000:0.947	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220	superfamily_LDL receptor-like module,HMMSmart_SM00192,HMMPfam_MAM,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,PatternScan_RECEPTOR_TYR_KIN_II	(deletion:cds_exon[29432652,29432744])	no_errors
ALPI	248	genome.wustl.edu	37	2	233321641	233321641	+	Silent	SNP	C	C	T	rs61732032	by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	233321641	233321641	C	T	SNP	ALPI	NM_001631	human	genbank	57_37b	+1	reviewed	silent	c.333	p.S111	0.094	superfamily_Alkaline phosphatase-like,HMMPfam_Alk_phosphatase,HMMSmart_SM00098,PatternScan_ALKALINE_PHOSPHATASE	superfamily_Alkaline phosphatase-like,HMMPfam_Alk_phosphatase,HMMSmart_SM00098,PatternScan_ALKALINE_PHOSPHATASE	-	
AMZ1	155185	genome.wustl.edu	37	7	2752152	2752152	+	Silent	SNP	G	G	A	rs798565	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	2752152	2752152	G	A	SNP	AMZ1	NM_133463	human	genbank	57_37b	+1	provisional	silent	c.1137	p.S379	0.000	NULL	"superfamily_Metalloproteases (""zincins"") catalytic domain,PatternScan_ZINC_PROTEASE"	-	
ANKRD30B	374860	genome.wustl.edu	37	18	14782552	14782552	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	14782552	14782552	T	C	SNP	ANKRD30B	NM_001145029	human	genbank	57_37b	+1	validated	silent	c.1509	p.T503	0.000	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_errors
ANKRD50	57182	genome.wustl.edu	37	4	125631416	125631416	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	125631416	125631416	G	C	SNP	ANKRD50	NM_020337	human	genbank	57_37b	-1	validated	missense	c.251	p.T84R	1.000	NULL	superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK	-	no_errors
ARHGAP24	83478	genome.wustl.edu	37	4	86863218	86863218	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	86863218	86863218	G	T	SNP	ARHGAP24	NM_001025616	human	genbank	57_37b	+1	validated	splice_site	c.392-1	e4-1	1.000	-	-	-	no_errors
ARMC8	25852	genome.wustl.edu	37	3	137983034	137983034	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	137983034	137983034	G	C	SNP	ARMC8	NM_015396	human	genbank	57_37b	+1	validated	missense	c.1237	p.V413L	0.999	superfamily_ARM-type_fold	superfamily_ARM-type_fold,HMMPfam_Arm,HMMSmart_ARM	-	no_errors
ARMCX1	51309	genome.wustl.edu	37	X	100807921	100807921	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	100807921	100807921	G	A	SNP	ARMCX1	NM_016608	human	genbank	57_37b	+1	reviewed	missense	c.8	p.R3H	0.998	NULL	superfamily_ARM-type_fold,HMMPfam_DUF634	-	no_errors
ARVCF	421	genome.wustl.edu	37	22	19959473	19959473	+	Missense_Mutation	SNP	C	C	T	rs165815	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	19959473	19959473	C	T	SNP	ARVCF	NM_001670	human	genbank	57_37b	-1	reviewed	missense	c.2717	p.R906Q	1.000	NULL	superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185	-	
ASPH	444	genome.wustl.edu	37	8	62563641	62563641	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	62563641	62563641	G	C	SNP	ASPH	NM_004318	human	genbank	57_37b	-1	reviewed	missense	c.458	p.S153C	0.329	HMMPfam_Asp-B-Hydro_N,superfamily_SSF48452	HMMPfam_Asp-B-Hydro_N,superfamily_SSF48452,HMMPfam_Asp_Arg_Hydrox,superfamily_SSF51197	-	no_errors
ATP8B2	57198	genome.wustl.edu	37	1	154300293	154300293	+	Silent	SNP	T	T	G	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	154300293	154300293	T	G	SNP	ATP8B2	NM_020452	human	genbank	57_37b	+1	reviewed	silent	c.18	p.A6	0.000	NULL	superfamily_SSF81665,superfamily_SSF81653,HMMPfam_E1-E2_ATPase,superfamily_SSF56784,PatternScan_ATPASE_E1_E2,superfamily_SSF81660,HMMPfam_Hydrolase_3	-	no_errors
BAHD1	22893	genome.wustl.edu	37	15	40751555	40751555	+	Missense_Mutation	SNP	C	C	A	rs3803357	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	40751555	40751555	C	A	SNP	BAHD1	NM_014952	human	genbank	57_37b	+1	validated	missense	c.892	p.Q298K	0.848	NULL	HMMPfam_BAH,HMMSmart_SM00439	-	
BAI1	575	genome.wustl.edu	37	8	143562899	143562901	+	In_Frame_Del	DEL	GCT	GCT	-	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	GCT	GCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	143562899	143562901	GCT	-	DEL	BAI1	NM_001702	human	genbank	57_37b	+1	reviewed	in_frame_del	c.1957_1959	p.A653in_frame_del	1.000:1.000:0.440	NULL	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMSmart_SM00008,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2	(deletion:cds_exon[143562878,143563072])	no_errors
BAI1	575	genome.wustl.edu	37	8	143562904	143562904	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	143562904	143562904	G	-	DEL	BAI1	NM_001702	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1962	p.Q654fs	1.000	NULL	HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_HRM,HMMSmart_SM00008	(deletion:cds_exon[143562878,143563072])	no_errors
BPIL3	128859	genome.wustl.edu	37	20	31627293	31627293	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	31627293	31627293	C	T	SNP	BPIL3	NM_174897	human	genbank	57_37b	+1	validated	silent	c.1041	p.S347	0.014	superfamily_Bactericidal_perm-incr_a/b_dom,HMMSmart_BPI2,HMMPfam_LBP_BPI_CETP_C	PatternScan_LBP_BPI_CETP,superfamily_Bactericidal_perm-incr_a/b_dom,HMMPfam_LBP_BPI_CETP,HMMSmart_BPI1,HMMSmart_BPI2,HMMPfam_LBP_BPI_CETP_C	-	no_errors
BRCA2	675	genome.wustl.edu	37	13	32953476	32953476	+	Nonsense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	32953476	32953476	T	G	SNP	BRCA2	NM_000059	human	genbank	57_37b	+1	reviewed	nonsense	c.8777	p.L2926*	0.941	superfamily_Nucleic_acid_OB,superfamily_SSF81878	HMMPfam_BRCA2,superfamily_BRCA2_helical,HMMPfam_BRCA-2_helical,superfamily_Nucleic_acid_OB,HMMPfam_BRCA-2_OB1,HMMPfam_Tower,superfamily_SSF81878,HMMPfam_BRCA-2_OB3	-	no_errors
BRPF3	27154	genome.wustl.edu	37	6	36198421	36198421	+	Missense_Mutation	SNP	T	T	C	rs9470234	byCluster;byFrequency;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	36198421	36198421	T	C	SNP	BRPF3	ENST00000394572	human	ensembl	57_37b	+1	known	missense	c.431	p.L144P	0.862	NULL	NULL	-	
BTBD2	55643	genome.wustl.edu	37	19	1986520	1986520	+	Silent	SNP	G	G	A	rs7253519	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	1986520	1986520	G	A	SNP	BTBD2	NM_017797	human	genbank	57_37b	-1	reviewed	silent	c.1545	p.D515	1.000	HMMPfam_PHR	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,HMMPfam_PHR	-	
C10orf110	55853	genome.wustl.edu	37	10	1089851	1089869	+	RNA	DEL	TGCACTTCCTTGAACAGAG	TGCACTTCCTTGAACAGAG	-	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	TGCACTTCCTTGAACAGAG	TGCACTTCCTTGAACAGAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	1089851	1089869	TGCACTTCCTTGAACAGAG	-	DEL	C10orf110	NR_024628	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.010:0.009:0.000:0.000:0.000	-	-	(deletion:rna[1089469,1090141])	no_errors
C1QTNF2	114898	genome.wustl.edu	37	5	159781785	159781785	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	159781785	159781785	G	T	SNP	C1QTNF2	NM_031908	human	genbank	57_37b	-1	validated	missense	c.369	p.S123R	0.082	HMMPfam_Collagen	HMMPfam_Collagen,HMMSmart_SM00110,superfamily_TNF-like,HMMPfam_C1q	-	no_errors
C1orf175	374977	genome.wustl.edu	37	1	55175761	55175761	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	55175761	55175761	C	A	SNP	C1orf175	NM_001039464	human	genbank	57_37b	+1	validated	missense	c.3873	p.H1291Q	0.998	NULL	superfamily_ARM repeat	-	no_errors
C1orf65	164127	genome.wustl.edu	37	1	223567939	223567939	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	223567939	223567939	C	G	SNP	C1orf65	NM_152610	human	genbank	57_37b	+1	validated	missense	c.1122	p.C374W	0.424	NULL	NULL	-	no_errors
C21orf129	150135	genome.wustl.edu	37	21	43133829	43133829	+	RNA	SNP	A	A	G	rs2838096	byCluster;byFrequency;bySubmitter;by2Hit2Allele;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	43133829	43133829	A	G	SNP	C21orf129	NR_027272	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.000	-	-	-	
C2orf39	92749	genome.wustl.edu	37	2	26653457	26653457	+	Missense_Mutation	SNP	G	A	A	rs4450561	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	26653457	26653457	G	A	SNP	C2orf39	ENST00000442810	human	ensembl	57_37b	+1	known	missense	c.101	p.R34H	0.000	NULL	NULL	-	
C5orf36	285600	genome.wustl.edu	37	5	93752964	93752964	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	93752964	93752964	G	C	SNP	C5orf36	NM_001145678	human	genbank	57_37b	-1	validated	missense	c.2604	p.N868K	1.000	NULL	NULL	-	no_errors
CACNA1G	8913	genome.wustl.edu	37	17	48653354	48653354	+	Silent	SNP	C	C	A	rs12449998	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	48653354	48653354	C	A	SNP	CACNA1G	NM_018896	human	genbank	57_37b	+1	validated	silent	c.1591	p.R531	1.000	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	
CASR	846	genome.wustl.edu	37	3	121980913	121980913	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	121980913	121980913	A	T	SNP	CASR	NM_000388	human	genbank	57_37b	+1	reviewed	missense	c.1031	p.H344L	1.000	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3	-	no_errors
CDR1	1038	genome.wustl.edu	37	X	139866173	139866173	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	139866173	139866173	T	G	SNP	CDR1	NM_004065	human	genbank	57_37b	-1	reviewed	missense	c.359	p.D120A	0.017	NULL	NULL	-	no_errors
CELSR2	1952	genome.wustl.edu	37	1	109815559	109815559	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	109815559	109815559	G	A	SNP	CELSR2	NM_001408	human	genbank	57_37b	+1	reviewed	missense	c.8248	p.E2750K	0.993	NULL	PatternScan_G_PROTEIN_RECEP_F2_1,PatternScan_G_PROTEIN_RECEP_F2_2,superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_EGF_CA,superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_2,PatternScan_ASX_HYDROXYL,HMMSmart_TNFR,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,HMMSmart_HormR,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2	-	no_errors
CEP70	80321	genome.wustl.edu	37	3	138216888	138216888	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	138216888	138216888	G	C	SNP	CEP70	NM_024491	human	genbank	57_37b	-1	validated	missense	c.1717	p.L573V	1.000	NULL	NULL	-	no_errors
CIDEC	63924	genome.wustl.edu	37	3	9918861	9918861	+	Silent	SNP	C	C	A	rs456168	byCluster;byFrequency;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	9918861	9918861	C	A	SNP	CIDEC	NM_022094	human	genbank	57_37b	-1	provisional	silent	c.96	p.L32	0.042	superfamily_CAD  PB1 domains	superfamily_CAD  PB1 domains,HMMPfam_CIDE-N,HMMSmart_SM00266,PatternScan_SERPIN	-	
CLIP1	6249	genome.wustl.edu	37	12	122812589	122812589	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	122812589	122812589	G	A	SNP	CLIP1	NM_002956	human	genbank	57_37b	-1	validated	silent	c.3121	p.L1041	0.000	NULL	superfamily_Cap-Gly domain,HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1	-	no_errors
CLSTN2	64084	genome.wustl.edu	37	3	140123537	140123537	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	140123537	140123537	C	A	SNP	CLSTN2	NM_022131	human	genbank	57_37b	+1	validated	missense	c.566	p.S189Y	1.000	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases	-	no_errors
COBL	23242	genome.wustl.edu	37	7	51287470	51287470	+	Silent	SNP	A	A	G	rs801142	byCluster;byFrequency;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	51287470	51287470	A	G	SNP	COBL	NM_015198	human	genbank	57_37b	-1	validated	silent	c.213	p.S71	0.971	HMMPfam_Cobl	HMMPfam_Cobl,HMMPfam_WH2,HMMSmart_SM00246	-	
COBRA1	25920	genome.wustl.edu	37	9	140167022	140167022	+	Silent	SNP	G	G	A	rs3204123	byCluster;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	140167022	140167022	G	A	SNP	COBRA1	NM_015456	human	genbank	57_37b	+1	validated	silent	c.1551	p.P517	0.000	HMMPfam_COBRA1	HMMPfam_COBRA1	-	
COL12A1	1303	genome.wustl.edu	37	6	75899454	75899454	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	75899454	75899454	A	T	SNP	COL12A1	NM_004370	human	genbank	57_37b	-1	reviewed	missense	c.472	p.Y158N	1.000	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00210,HMMPfam_Collagen	-	no_errors
COL4A4	1286	genome.wustl.edu	37	2	227886853	227886853	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	227886853	227886853	G	C	SNP	COL4A4	NM_000092	human	genbank	57_37b	-1	reviewed	missense	c.4127	p.P1376R	1.000	NULL	HMMPfam_Collagen,HMMPfam_C4,HMMSmart_SM00111,superfamily_C-type lectin-like	-	no_errors
COL6A6	131873	genome.wustl.edu	37	3	130284028	130284028	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	130284028	130284028	C	A	SNP	COL6A6	NM_001102608	human	genbank	57_37b	+1	provisional	missense	c.852	p.S284R	0.971	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA	HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA,HMMPfam_Collagen	-	no_errors
CPSF2	53981	genome.wustl.edu	37	14	92628064	92628064	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	92628064	92628064	A	G	SNP	CPSF2	NM_017437	human	genbank	57_37b	+1	validated	silent	c.2325	p.L775	1.000	NULL	superfamily_Metallo-hydrolase/oxidoreductase,HMMPfam_Lactamase_B,HMMPfam_RMMBL	-	no_errors
CSMD2	114784	genome.wustl.edu	37	1	34191097	34191097	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	34191097	34191097	C	T	SNP	CSMD2	NM_052896	human	genbank	57_37b	-1	validated	missense	c.2428	p.D810N	1.000	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,PatternScan_GLYCOSYL_HYDROL_F10,PatternScan_IG_MHC	-	no_errors
CSPP1	79848	genome.wustl.edu	37	8	68089921	68089921	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	68089921	68089921	T	C	SNP	CSPP1	NM_001077204	human	genbank	57_37b	+1	validated	missense	c.3206	p.L1069S	0.757	NULL	NULL	-	no_errors
CXorf22	170063	genome.wustl.edu	37	X	35985882	35985882	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	35985882	35985882	A	G	SNP	CXorf22	NM_152632	human	genbank	57_37b	+1	validated	missense	c.1747	p.M583V	0.001	NULL	NULL	-	no_errors
CYP4F11	57834	genome.wustl.edu	37	19	16034822	16034822	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	16034822	16034822	G	C	SNP	CYP4F11	NM_001128932	human	genbank	57_37b	-1	reviewed	missense	c.718	p.L240V	0.001	superfamily_Cytochrome P450,HMMPfam_p450	superfamily_Cytochrome P450,HMMPfam_p450,PatternScan_CYTOCHROME_P450	-	no_errors
CYP4F2	8529	genome.wustl.edu	37	19	15990642	15990642	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	15990642	15990642	G	C	SNP	CYP4F2	NM_001082	human	genbank	57_37b	-1	reviewed	missense	c.1181	p.P394R	0.992	superfamily_Cytochrome_P450,HMMPfam_p450	superfamily_Cytochrome_P450,HMMPfam_p450,PatternScan_CYTOCHROME_P450	-	no_errors
DALRD3	55152	genome.wustl.edu	37	3	49053734	49053734	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	49053734	49053734	C	A	SNP	DALRD3	NM_001009996	human	genbank	57_37b	-1	validated	missense	c.1186	p.G396C	1.000	NULL	superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases,HMMPfam_DALR_1	-	no_errors
DDX12	440081	genome.wustl.edu	37	12	9583324	9583324	+	Missense_Mutation	SNP	G	A	A	rs71447578	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	9583324	9583324	G	A	SNP	DDX12	NM_004400	human	genbank	57_37b	-1	validated	missense	c.1102	p.P368S	1.000	HMMSmart_SM00488,HMMPfam_DEAD_2,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00488,HMMSmart_SM00491,HMMPfam_DEAD_2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	
DEAF1	10522	genome.wustl.edu	37	11	654016	654016	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	654016	654016	G	A	SNP	DEAF1	NM_021008	human	genbank	57_37b	-1	validated	silent	c.1539	p.S513	0.974	HMMPfam_zf-MYND,PatternScan_ZF_MYND_1	superfamily_SAND domain-like,HMMPfam_SAND,HMMSmart_SM00258,HMMPfam_zf-MYND,PatternScan_ZF_MYND_1	-	no_errors
DFFB	1677	genome.wustl.edu	37	1	3786245	3786245	+	Missense_Mutation	SNP	G	G	A	rs12738235	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	3786245	3786245	G	A	SNP	DFFB	NM_004402	human	genbank	57_37b	+1	reviewed	missense	c.587	p.R196K	0.980	superfamily_His-Me finger endonucleases,HMMPfam_DFF40	superfamily_CAD  PB1 domains,HMMPfam_CIDE-N,HMMSmart_SM00266,superfamily_His-Me finger endonucleases,HMMPfam_DFF40	-	
DHX33	56919	genome.wustl.edu	37	17	5347788	5347788	+	Missense_Mutation	SNP	G	G	A	rs75426953	byCluster;byFrequency;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	5347788	5347788	G	A	SNP	DHX33	NM_020162	human	genbank	57_37b	-1	reviewed	missense	c.1861	p.R621C	1.000	HMMPfam_DUF1605	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_HA2,HMMPfam_DUF1605	-	
DLEC1	9940	genome.wustl.edu	37	3	38080952	38080952	+	Missense_Mutation	SNP	T	T	G	rs7625806	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	38080952	38080952	T	G	SNP	DLEC1	NM_007337	human	genbank	57_37b	+1	reviewed	missense	c.236	p.L79R	0.019	NULL	NULL	-	
DNAH11	8701	genome.wustl.edu	37	7	21659621	21659621	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	21659621	21659621	C	T	SNP	DNAH11	NM_003777	human	genbank	57_37b	+1	reviewed	silent	c.4440	p.Y1480	0.983	HMMPfam_DHC_N2	HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,PatternScan_THIOL_PROTEASE_HIS,HMMPfam_AAA_5,PatternScan_WD_REPEATS_1,HMMPfam_Dynein_heavy	-	no_errors
DNAH5	1767	genome.wustl.edu	37	5	13841155	13841155	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	13841155	13841155	G	A	SNP	DNAH5	NM_001369	human	genbank	57_37b	-1	reviewed	nonsense	c.5569	p.Q1857*	1.000	NULL	HMMPfam_DHC_N1,superfamily_Spectrin,HMMPfam_DHC_N2,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-	no_errors
DNALI1	7802	genome.wustl.edu	37	1	38030643	38030643	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	38030643	38030643	T	C	SNP	DNALI1	NM_003462	human	genbank	57_37b	+1	reviewed	missense	c.824	p.I275T	1.000	HMMPfam_Ax_dynein_light	HMMPfam_Ax_dynein_light	-	no_errors
DOCK2	1794	genome.wustl.edu	37	5	169507239	169507239	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	169507239	169507239	G	T	SNP	DOCK2	NM_004946	human	genbank	57_37b	+1	validated	missense	c.5239	p.V1747F	0.027	NULL	superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_Cytochrome c	-	no_errors
DSCAML1	57453	genome.wustl.edu	37	11	117302417	117302434	+	In_Frame_Del	DEL	GACTTCACATTCTTCCTG	GACTTCACATTCTTCCTG	-	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	GACTTCACATTCTTCCTG	GACTTCACATTCTTCCTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	117302417	117302434	GACTTCACATTCTTCCTG	-	DEL	DSCAML1	NM_020693	human	genbank	57_37b	-1	provisional	in_frame_del	c.5387_5370	p.RKNVKS1791in_frame_del	1.000:1.000:1.000:1.000:1.000:0.985:1.000:0.994:0.435:0.992:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,HMMSmart_SM00406,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	(deletion:cds_exon[117302250,117302444])	no_errors
EEF1D	1936	genome.wustl.edu	37	8	144669010	144669010	+	Silent	SNP	A	A	T	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	144669010	144669010	A	T	SNP	EEF1D	NM_001130053	human	genbank	57_37b	-1	reviewed	silent	c.1104	p.A368	0.740	NULL	PatternScan_EF1BD_1,HMMPfam_EF-1_beta_acid,superfamily_eEF-1beta-like,HMMPfam_EF1_GNE,PatternScan_EF1BD_2	-	no_errors
ENSG00000188014	0	genome.wustl.edu	37	4	113483568	113483589	+	Frame_Shift_Del	DEL	AAAGTAGTCCTGAATGTTTTTC	AAAGTAGTCCTGAATGTTTTTC	-	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	AAAGTAGTCCTGAATGTTTTTC	AAAGTAGTCCTGAATGTTTTTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	113483568	113483589	AAAGTAGTCCTGAATGTTTTTC	-	DEL	ENSG00000188014	ENST00000313239	human	ensembl	57_37b	-1	known	frame_shift_del	c.1122_1101	p.K368fs	0.918:0.997:1.000:1.000:0.999:0.990:0.994:0.998:0.995:0.963:0.988:0.986:0.955:1.000:1.000:0.998:1.000:1.000:0.989:0.994:0.999:0.998	NULL	HMMPfam_zf-GRF,superfamily_P-loop containing nucleoside triphosphate hydrolases	(deletion:cds_exon[113483527,113483641])	no_errors
ENSG00000241327	0	genome.wustl.edu	37	4	105895837	105895837	+	RNA	SNP	G	G	A	rs13147309	byCluster;byFrequency;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	105895837	105895837	G	A	SNP	ENSG00000241327	ENST00000462647	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.145	-	-	-	
ENSG00000244970	0	genome.wustl.edu	37	17	15340330	15340330	+	RNA	DEL	T	T	-	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	15340330	15340330	T	-	DEL	ENSG00000244970	ENST00000501156	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.001	-	-	(deletion:rna[15339333,15340966])	no_errors
ENSG00000245063	0	genome.wustl.edu	37	1	55534692	55534692	+	RNA	SNP	A	A	C	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	55534692	55534692	A	C	SNP	ENSG00000245063	ENST00000500997	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors
ENSG00000245549	0	genome.wustl.edu	37	1	16947092	16947092	+	RNA	SNP	G	G	A	rs384073	byCluster;by2Hit2Allele;byHapMap	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16947092	16947092	G	A	SNP	ENSG00000245549	ENST00000501442	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.669	-	-	-	
ENSG00000245549	0	genome.wustl.edu	37	1	16947282	16947282	+	RNA	DEL	C	C	-	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16947282	16947282	C	-	DEL	ENSG00000245549	ENST00000501442	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.764	-	-	(deletion:rna[16946910,16947588])	no_errors
ENSG00000245898	0	genome.wustl.edu	37	7	44424253	44424253	+	RNA	SNP	C	C	T	rs1043084	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	44424253	44424253	C	T	SNP	ENSG00000245898	ENST00000500718	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	
ENSG00000245951	0	genome.wustl.edu	37	2	128473677	128473677	+	RNA	SNP	C	T	T	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	128473677	128473677	C	T	SNP	ENSG00000245951	ENST00000499225	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors
ENSG00000246022	0	genome.wustl.edu	37	3	125926184	125926187	+	RNA	DEL	CTGA	CTGA	-	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	CTGA	CTGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	125926184	125926187	CTGA	-	DEL	ENSG00000246022	ENST00000500525	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000:0.000:0.000:0.000	-	-	(deletion:rna[125926098,125926387])	no_errors
ENSG00000246652	0	genome.wustl.edu	37	10	104852659	104852660	+	RNA	INS	-	-	AACTT	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	104852659	104852660	-	AACTT	INS	ENSG00000246652	ENST00000500822	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors
ENSG00000247383	0	genome.wustl.edu	37	5	107005202	107005202	+	RNA	SNP	C	T	T	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	107005202	107005202	C	T	SNP	ENSG00000247383	ENST00000499684	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors
ENSG00000247383	0	genome.wustl.edu	37	5	107006330	107006330	+	RNA	SNP	G	G	T	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	107006330	107006330	G	T	SNP	ENSG00000247383	ENST00000499684	human	ensembl	57_37b	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors
ENSG00000247455	0	genome.wustl.edu	37	19	3976321	3976321	+	RNA	SNP	T	G	G	rs3170368	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	3976321	3976321	T	G	SNP	ENSG00000247455	ENST00000501578	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-	
ENSG00000247584	0	genome.wustl.edu	37	19	41315318	41315318	+	RNA	SNP	G	G	C	rs4802091	byCluster;byFrequency;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	41315318	41315318	G	C	SNP	ENSG00000247584	ENST00000501902	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	
ENSG00000247932	0	genome.wustl.edu	37	19	58326001	58326001	+	RNA	SNP	A	A	G	rs2303817	byCluster;byFrequency;bySubmitter;by2Hit2Allele;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	58326001	58326001	A	G	SNP	ENSG00000247932	ENST00000458546	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	
ENSG00000248084	0	genome.wustl.edu	37	2	55776793	55776793	+	RNA	SNP	G	G	A	rs3748945	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	55776793	55776793	G	A	SNP	ENSG00000248084	ENST00000499028	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.453	-	-	-	
EPN2	22905	genome.wustl.edu	37	17	19235190	19235211	+	Frame_Shift_Del	DEL	CCCAAAACAATGGAACTACCAG	CCCAAAACAATGGAACTACCAG	-	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	CCCAAAACAATGGAACTACCAG	CCCAAAACAATGGAACTACCAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	19235190	19235211	CCCAAAACAATGGAACTACCAG	-	DEL	EPN2	NM_014964	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1436_1457	p.Q480fs	1.000:1.000:1.000:0.951:0.625:0.713:0.835:0.990:0.995:0.974:0.954:0.967:0.976:0.947:0.969:0.969:0.080:0.095:0.181:0.002:0.966:1.000	NULL	superfamily_ENTH/VHS domain,HMMPfam_ENTH,HMMSmart_SM00273,HMMPfam_UIM,HMMSmart_SM00726	(deletion:cds_exon[19235166,19235381])	no_errors
EPN3	55040	genome.wustl.edu	37	17	48614030	48614030	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	48614030	48614030	C	T	SNP	EPN3	NM_017957	human	genbank	57_37b	+1	validated	missense	c.113	p.S38L	1.000	superfamily_ENTH/VHS domain,HMMPfam_ENTH,HMMSmart_SM00273	superfamily_ENTH/VHS domain,HMMPfam_ENTH,HMMSmart_SM00273,HMMPfam_UIM,HMMSmart_SM00726	-	no_errors
ETV6	2120	genome.wustl.edu	37	12	12037502	12037502	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	12037502	12037502	G	C	SNP	ETV6	NM_001987	human	genbank	57_37b	+1	reviewed	missense	c.1133	p.R378P	1.000	"superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Ets,HMMSmart_SM00413"	"superfamily_SAM/Pointed domain,HMMPfam_SAM_PNT,HMMSmart_SM00251,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_2"	-	no_errors
FCGR1B	2210	genome.wustl.edu	37	1	120927202	120927202	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	120927202	120927202	G	A	SNP	FCGR1B	NM_001017986	human	genbank	57_37b	-1	validated	nonsense	c.778	p.Q260*	0.003	NULL	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	-	no_errors
GALNTL4	374378	genome.wustl.edu	37	11	11354346	11354346	+	Silent	SNP	T	T	C	rs901553	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	11354346	11354346	T	C	SNP	GALNTL4	NM_198516	human	genbank	57_37b	-1	validated	silent	c.1311	p.A437	0.678	superfamily_Nucleotide-diphospho-sugar transferases	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,HMMPfam_Ricin_B_lectin,HMMSmart_SM00458	-	
GP5	2814	genome.wustl.edu	37	3	194118427	194118427	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	194118427	194118427	C	T	SNP	GP5	NM_004488	human	genbank	57_37b	-1	validated	silent	c.585	p.K195	0.082	superfamily_SSF52058	superfamily_SSF52058,HMMSmart_LRRNT,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMSmart_LRRCT,HMMPfam_LRRCT	-	no_errors
GPR108	56927	genome.wustl.edu	37	19	6731281	6731281	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	6731281	6731281	C	T	SNP	GPR108	NM_001080452	human	genbank	57_37b	-1	provisional	missense	c.1363	p.V455I	0.995	HMMPfam_Lung_7-TM_R	HMMPfam_Lung_7-TM_R	-	no_errors
GPR37	2861	genome.wustl.edu	37	7	124387321	124387321	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	124387321	124387321	T	G	SNP	GPR37	NM_005302	human	genbank	57_37b	-1	provisional	missense	c.1100	p.Q367P	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_errors
GRIA1	2890	genome.wustl.edu	37	5	153144138	153144138	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	153144138	153144138	G	C	SNP	GRIA1	NM_000827	human	genbank	57_37b	+1	reviewed	missense	c.1968	p.Q656H	1.000	HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II,HMMPfam_Lig_chan	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan	-	no_errors
GRIN2C	2905	genome.wustl.edu	37	17	72838649	72838649	+	Missense_Mutation	SNP	C	C	A	rs3744215	byCluster;byFrequency;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	72838649	72838649	C	A	SNP	GRIN2C	NM_000835	human	genbank	57_37b	-1	reviewed	missense	c.3627	p.R1209S	0.008	NULL	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like II,HMMSmart_SM00079,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan	-	
H1FNT	341567	genome.wustl.edu	37	12	48723324	48723324	+	Missense_Mutation	SNP	C	C	G	rs2732441	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	48723324	48723324	C	G	SNP	H1FNT	NM_181788	human	genbank	57_37b	+1	provisional	missense	c.250	p.R84G	0.005	NULL	NULL	-	
HAR1A	0	genome.wustl.edu	37	20	61733262	61733262	+	RNA	SNP	C	C	A	rs6122371	byCluster;byHapMap;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	61733262	61733262	C	A	SNP	HAR1A	NR_003244	human	genbank	57_37b	+1	provisional	rna	NULL	NULL	0.000	-	-	-	
HDAC6	10013	genome.wustl.edu	37	X	48682346	48682346	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	48682346	48682346	T	C	SNP	HDAC6	NM_006044	human	genbank	57_37b	+1	reviewed	silent	c.3318	p.A1106	0.885	NULL	superfamily_SSF52768,HMMPfam_Hist_deacetyl,HMMSmart_ZnF_UBP,HMMPfam_zf-UBP	-	no_errors
HEATR1	55127	genome.wustl.edu	37	1	236739603	236739603	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	236739603	236739603	C	G	SNP	HEATR1	NM_018072	human	genbank	57_37b	-1	validated	missense	c.3000	p.L1000F	0.824	superfamily_ARM-type_fold	superfamily_ARM-type_fold,HMMPfam_HEAT,HMMPfam_BP28CT	-	no_errors
HERC5	51191	genome.wustl.edu	37	4	89388332	89388332	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	89388332	89388332	C	A	SNP	HERC5	NM_016323	human	genbank	57_37b	+1	reviewed	nonsense	c.1034	p.S345*	0.324	superfamily_RCC1/BLIP-II	superfamily_RCC1/BLIP-II,PatternScan_RCC1_2,HMMPfam_RCC1,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	-	no_errors
HIBCH	26275	genome.wustl.edu	37	2	191117010	191117010	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	191117010	191117010	C	G	SNP	HIBCH	NM_014362	human	genbank	57_37b	-1	validated	missense	c.541	p.G181R	1.000	superfamily_ClpP/crotonase,HMMPfam_ECH	superfamily_ClpP/crotonase,HMMPfam_ECH	-	no_errors
HIST1H2BC	8347	genome.wustl.edu	37	6	26123995	26123995	+	Silent	SNP	C	C	G	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	26123995	26123995	C	G	SNP	HIST1H2BC	NM_003526	human	genbank	57_37b	-1	reviewed	silent	c.138	p.L46	1.000	superfamily_Histone-fold,HMMSmart_SM00427,HMMPfam_Histone	superfamily_Histone-fold,HMMSmart_SM00427,HMMPfam_Histone,PatternScan_HISTONE_H2B	-	no_errors
HRCT1	0	genome.wustl.edu	37	9	35906471	35906471	+	Missense_Mutation	SNP	C	C	T	rs76452347	byCluster;byFrequency;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	35906471	35906471	C	T	SNP	HRCT1	NM_001039792	human	genbank	57_37b	+1	validated	missense	c.187	p.R63W	0.083	NULL	NULL	-	
HSD17B4	3295	genome.wustl.edu	37	5	118824925	118824925	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	118824925	118824925	C	G	SNP	HSD17B4	NM_000414	human	genbank	57_37b	+1	reviewed	missense	c.661	p.L221V	0.672	superfamily_NAD(P)-bd	superfamily_NAD(P)-bd,HMMPfam_adh_short,PatternScan_ADH_SHORT,superfamily_SSF54637,HMMPfam_MaoC_dehydratas,superfamily_SCP2,HMMPfam_SCP2	-	no_errors
HSPA4	3308	genome.wustl.edu	37	5	132412489	132412489	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	132412489	132412489	G	C	SNP	HSPA4	NM_002154	human	genbank	57_37b	+1	validated	missense	c.807	p.E269D	1.000	HMMPfam_HSP70,superfamily_SSF53067	PatternScan_HSP70_1,superfamily_SSF53067,HMMPfam_HSP70,PatternScan_HSP70_2,PatternScan_HSP70_3,superfamily_SSF100920,superfamily_SSF100934	-	no_errors
HSPG2	3339	genome.wustl.edu	37	1	22206964	22206964	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	22206964	22206964	G	C	SNP	HSPG2	ENST00000374695	human	ensembl	57_37b	-1	known	missense	c.2087	p.T696S	0.997	HMMSmart_SM00281,HMMPfam_Laminin_B	HMMPfam_SEA,HMMSmart_SM00200,HMMPfam_Ldl_recept_a,superfamily_LDL receptor-like module,HMMSmart_SM00192,PatternScan_LDLRA_1,HMMSmart_SM00181,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMSmart_SM00281,HMMPfam_Laminin_B,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_LAM_1,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,HMMSmart_SM00179,HMMPfam_V-set,HMMPfam_ig,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMPfam_EGF,HMMPfam_Laminin_G_1	-	no_errors
ITIH1	3697	genome.wustl.edu	37	3	52820422	52820422	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	52820422	52820422	C	G	SNP	ITIH1	NM_002215	human	genbank	57_37b	+1	reviewed	missense	c.1705	p.L569V	1.000	NULL	HMMSmart_SM00609,HMMPfam_VIT,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_ITI_HC_C	-	no_errors
ITPA	3704	genome.wustl.edu	37	20	3204084	3204084	+	Silent	SNP	G	G	A	rs9101	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	3204084	3204084	G	A	SNP	ITPA	NM_033453	human	genbank	57_37b	+1	reviewed	silent	c.561	p.E187	0.011	superfamily_SSF52972,HMMPfam_Ham1p_like	superfamily_SSF52972,HMMPfam_Ham1p_like	-	
KAT2A	2648	genome.wustl.edu	37	17	40266620	40266620	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	40266620	40266620	G	A	SNP	KAT2A	NM_021078	human	genbank	57_37b	-1	validated	silent	c.2022	p.I674	0.998	NULL	HMMPfam_PCAF_N,superfamily_Acyl-CoA N-acyltransferases (Nat),HMMPfam_Acetyltransf_1,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors
KIAA0195	9772	genome.wustl.edu	37	17	73491664	73491664	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	73491664	73491664	C	G	SNP	KIAA0195	NM_014738	human	genbank	57_37b	+1	validated	missense	c.2884	p.L962V	1.000	NULL	superfamily_Calcium ATPase transmembrane domain M	-	no_errors
KIAA1024	23251	genome.wustl.edu	37	15	79750127	79750127	+	Silent	SNP	A	A	G	rs2902954	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	79750127	79750127	A	G	SNP	KIAA1024	NM_015206	human	genbank	57_37b	+1	validated	silent	c.1638	p.G546	0.816	NULL	HMMPfam_UPF0258	-	
KIAA1841	84542	genome.wustl.edu	37	2	61343192	61343192	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	61343192	61343192	A	G	SNP	KIAA1841	NM_001129993	human	genbank	57_37b	+1	validated	missense	c.1823	p.K608R	0.971	NULL	NULL	-	no_errors
KLRG2	346689	genome.wustl.edu	37	7	139138950	139138950	+	Missense_Mutation	SNP	C	C	G	rs17160911	byCluster;byFrequency;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	139138950	139138950	C	G	SNP	KLRG2	NM_198508	human	genbank	57_37b	-1	validated	missense	c.1016	p.G339A	0.776	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C	-	
KRT73	319101	genome.wustl.edu	37	12	53002195	53002195	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	53002195	53002195	C	T	SNP	KRT73	NM_175068	human	genbank	57_37b	-1	reviewed	missense	c.1408	p.A470T	0.000	NULL	HMMPfam_Filament,PatternScan_IF	-	no_errors
KRT85	3891	genome.wustl.edu	37	12	52760852	52760852	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	52760852	52760852	T	A	SNP	KRT85	NM_002283	human	genbank	57_37b	-1	reviewed	missense	c.338	p.D113V	1.000	NULL	HMMPfam_Filament,PatternScan_IF	-	no_errors
KRTAP20-3	0	genome.wustl.edu	37	21	32015243	32015243	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	32015243	32015243	C	A	SNP	KRTAP20-3	NM_001128077	human	genbank	57_37b	+1	validated	silent	c.36	p.G12	0.126	NULL	NULL	-	no_errors
KRTAP5-5	439915	genome.wustl.edu	37	11	1651643	1651643	+	Silent	SNP	C	C	T	rs4752771	by2Hit2Allele;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	1651643	1651643	C	T	SNP	KRTAP5-5	NM_001001480	human	genbank	57_37b	+1	validated	silent	c.573	p.P191	0.974	NULL	PatternScan_MOLYBDOPTERIN_PROK_1,PatternScan_2FE2S_FER_1	-	
LDLR	3949	genome.wustl.edu	37	19	11224265	11224265	+	Silent	SNP	A	A	G	rs5930	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	11224265	11224265	A	G	SNP	LDLR	NM_000527	human	genbank	57_37b	+1	reviewed	silent	c.1413	p.R471	0.000	superfamily_YWTD domain,HMMPfam_Ldl_recept_b,HMMSmart_SM00135	superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b	-	
LETM1	3954	genome.wustl.edu	37	4	1838173	1838173	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	1838173	1838173	C	T	SNP	LETM1	NM_012318	human	genbank	57_37b	-1	reviewed	missense	c.721	p.E241K	1.000	HMMPfam_LETM1	HMMPfam_LETM1,PatternScan_EF_HAND_1	-	no_errors
LIMD1	8994	genome.wustl.edu	37	3	45637253	45637253	+	Silent	SNP	C	C	T	rs267237	byCluster;by2Hit2Allele;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	45637253	45637253	C	T	SNP	LIMD1	NM_014240	human	genbank	57_37b	+1	validated	silent	c.882	p.T294	0.006	NULL	HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_SSF57716	-	
LMOD1	25802	genome.wustl.edu	37	1	201869266	201869266	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	201869266	201869266	T	C	SNP	LMOD1	NM_012134	human	genbank	57_37b	-1	reviewed	missense	c.875	p.E292G	0.001	HMMPfam_Tropomodulin	HMMPfam_Tropomodulin,superfamily_SSF52047,HMMSmart_WH2	-	no_errors
LOC100129126	0	genome.wustl.edu	37	7	63441740	63441740	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	63441740	63441740	G	C	SNP	LOC100129126	XM_001715328	human	genbank	57_37b	-1	model	missense	c.22	p.L8V	0.746	superfamily_KRAB domain (Kruppel-associated box Pfam 01352)	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_V1R	-	no_errors
LOC100129786	0	genome.wustl.edu	37	4	3644163	3644164	+	Frame_Shift_Ins	INS	-	-	TG	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	3644163	3644164	-	TG	INS	LOC100129786	XM_001719840	human	genbank	57_37b	-1	model	frame_shift_ins	c.146_145	p.R49fs	0.003:0.002	NULL	NULL	-	no_errors
LOC100289074	0	genome.wustl.edu	37	17	81082678	81082678	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	81082678	81082678	G	A	SNP	LOC100289074	XM_002343591	human	genbank	57_37b	+1	model	missense	c.575	p.R192H	0.821	NULL	NULL	-	no_errors
LOC100289574	0	genome.wustl.edu	37	16	32191941	32191941	+	Missense_Mutation	SNP	C	C	T	rs77427075	byCluster;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	32191941	32191941	C	T	SNP	LOC100289574	XM_002343438	human	genbank	57_37b	-1	model	missense	c.265	p.G89S	1.000	NULL	NULL	-	
LOC100291847	0	genome.wustl.edu	37	2	1088926	1088926	+	Missense_Mutation	SNP	C	G	G	rs4971436	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	1088926	1088926	C	G	SNP	LOC100291847	XM_002345555	human	genbank	57_37b	-1	model	missense	c.488	p.C163S	0.000	NULL	NULL	-	
LOC388692	388692	genome.wustl.edu	37	1	149286166	149286166	+	RNA	DEL	T	T	-	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	149286166	149286166	T	-	DEL	LOC388692	NR_027002	human	genbank	57_37b	+1	predicted	rna	NULL	NULL	0.001	-	-	(deletion:rna[149279476,149291742])	no_errors
LOC388946	388946	genome.wustl.edu	37	2	46707851	46707851	+	Missense_Mutation	SNP	G	G	A	rs61995902	byCluster;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	46707851	46707851	G	A	SNP	LOC388946	NM_001145051	human	genbank	57_37b	+1	validated	missense	c.425	p.R142Q	1.000	NULL	NULL	-	
LOC388996	388996	genome.wustl.edu	37	2	91777739	91777739	+	RNA	SNP	T	T	A	rs4518004	byCluster;byFrequency;by2Hit2Allele;byHapMap	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	91777739	91777739	T	A	SNP	LOC388996	XR_017571	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.991	-	-	-	
LOC400986	400986	genome.wustl.edu	37	2	96546211	96546211	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	96546211	96546211	C	T	SNP	LOC400986	XM_001717763	human	genbank	57_37b	-1	model	missense	c.2386	p.A796T	0.002	NULL	NULL	-	no_errors
LRRC70	0	genome.wustl.edu	37	5	61875866	61875866	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	61875866	61875866	C	T	SNP	LRRC70	NM_181506	human	genbank	57_37b	+1	validated	nonsense	c.601	p.Q201*	0.994	superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1	superfamily_SSF52058,HMMSmart_LRRNT,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMSmart_LRRCT,HMMPfam_LRRCT	-	no_errors
LRRN2	10446	genome.wustl.edu	37	1	204587145	204587145	+	Missense_Mutation	SNP	A	A	G	rs34771052	byCluster;byFrequency;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	204587145	204587145	A	G	SNP	LRRN2	NM_006338	human	genbank	57_37b	-1	reviewed	missense	c.1976	p.V659A	0.020	NULL	superfamily_L domain-like,HMMSmart_SM00365,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	-	
MADD	8567	genome.wustl.edu	37	11	47296330	47296330	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	47296330	47296330	C	A	SNP	MADD	NM_003682	human	genbank	57_37b	+1	reviewed	silent	c.279	p.I93	1.000	HMMPfam_uDENN,HMMSmart_SM00800	HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_DENN,HMMSmart_SM00799,HMMSmart_SM00801,HMMPfam_dDENN	-	no_errors
MAP3K2	10746	genome.wustl.edu	37	2	128084359	128084359	+	Silent	SNP	T	T	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	128084359	128084359	T	A	SNP	MAP3K2	NM_006609	human	genbank	57_37b	-1	reviewed	silent	c.501	p.P167	0.625	NULL	HMMPfam_PB1,HMMSmart_SM00666,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
MAPK6	5597	genome.wustl.edu	37	15	52356303	52356303	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	52356303	52356303	T	C	SNP	MAPK6	NM_002748	human	genbank	57_37b	+1	reviewed	silent	c.1272	p.C424	0.998	NULL	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
MAST1	22983	genome.wustl.edu	37	19	12958697	12958697	+	Silent	SNP	T	T	C	rs2290688	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	12958697	12958697	T	C	SNP	MAST1	NM_014975	human	genbank	57_37b	+1	validated	silent	c.600	p.F200	0.870	HMMPfam_DUF1908	PatternScan_PROTEIN_KINASE_ATP,HMMPfam_DUF1908,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C,superfamily_PDZ,HMMSmart_PDZ,HMMPfam_PDZ	-	
METTL11B	149281	genome.wustl.edu	37	1	170129793	170129793	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	170129793	170129793	G	T	SNP	METTL11B	NM_001136107	human	genbank	57_37b	+1	validated	missense	c.289	p.D97Y	1.000	superfamily_SSF53335,HMMPfam_DUF858	superfamily_SSF53335,HMMPfam_DUF858	-	no_errors
MS4A15	219995	genome.wustl.edu	37	11	60540906	60540906	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	60540906	60540906	G	A	SNP	MS4A15	NM_001098835	human	genbank	57_37b	+1	validated	silent	c.447	p.A149	0.717	HMMPfam_CD20	HMMPfam_CD20,PatternScan_IG_MHC	-	no_errors
MUC16	94025	genome.wustl.edu	37	19	9086543	9086543	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	9086543	9086543	G	T	SNP	MUC16	NM_024690	human	genbank	57_37b	-1	validated	missense	c.5272	p.P1758T	0.000	NULL	PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA	-	no_errors
MUC4	4585	genome.wustl.edu	37	3	195512196	195512196	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	195512196	195512196	G	A	SNP	MUC4	NM_018406	human	genbank	57_37b	-1	reviewed	silent	c.6255	p.D2085	0.104	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
MUC5B	727897	genome.wustl.edu	37	11	1156646	1156646	+	Missense_Mutation	SNP	C	C	G	rs35783651	byCluster;byFrequency;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	1156646	1156646	C	G	SNP	MUC5B	ENST00000406844	human	ensembl	57_37b	+1	known	missense	c.663	p.S221R	0.072	HMMSmart_SM00216	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00214,HMMSmart_SM00215,superfamily_PMP inhibitors,PatternScan_VWFC_1,HMMPfam_VWC,HMMSmart_SM00041,HMMPfam_Cys_knot	-	
MUC5B	727897	genome.wustl.edu	37	11	1247458	1247458	+	Missense_Mutation	SNP	C	C	T	rs2075853	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	1247458	1247458	C	T	SNP	MUC5B	NM_002458	human	genbank	57_37b	+1	validated	missense	c.151	p.R51W	0.000	NULL	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00214,HMMSmart_SM00215,superfamily_PMP inhibitors,PatternScan_VWFC_1,HMMPfam_VWC,HMMSmart_SM00041,HMMPfam_Cys_knot,PatternScan_CTCK_1	-	
MX1	4599	genome.wustl.edu	37	21	42824598	42824598	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	42824598	42824598	G	A	SNP	MX1	NM_001144925	human	genbank	57_37b	+1	reviewed	silent	c.1560	p.L520	0.000	HMMPfam_Dynamin_M	HMMSmart_DYNc,superfamily_SSF52540,HMMPfam_Dynamin_N,PatternScan_DYNAMIN,HMMPfam_Dynamin_M,HMMPfam_GED,HMMSmart_GED	-	no_errors
MYCBP2	23077	genome.wustl.edu	37	13	77754280	77754280	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	77754280	77754280	C	T	SNP	MYCBP2	NM_015057	human	genbank	57_37b	-1	validated	silent	c.5001	p.A1667	0.323	NULL	superfamily_RCC1/BLIP-II,PatternScan_RCC1_2,HMMPfam_RCC1,HMMPfam_PHR,superfamily_E set domains,superfamily_Galactose-binding domain-like,superfamily_RING/U-box,HMMSmart_SM00184	-	no_errors
MYH11	4629	genome.wustl.edu	37	16	15833955	15833955	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	15833955	15833955	C	G	SNP	MYH11	NM_001040114	human	genbank	57_37b	-1	reviewed	missense	c.2971	p.E991Q	1.000	NULL	HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_tail_1	-	no_errors
MYH11	4629	genome.wustl.edu	37	16	15850316	15850316	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	15850316	15850316	G	T	SNP	MYH11	NM_001040114	human	genbank	57_37b	-1	reviewed	missense	c.1652	p.A551D	1.000	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540	-	no_errors
MYO7B	4648	genome.wustl.edu	37	2	128366364	128366364	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	128366364	128366364	G	A	SNP	MYO7B	NM_001080527	human	genbank	57_37b	+1	provisional	missense	c.2725	p.V909I	0.002	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,HMMSmart_SM00139,HMMPfam_MyTH4,HMMSmart_SM00295,superfamily_Second domain of FERM,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,HMMPfam_FERM_M	-	no_errors
NBAS	51594	genome.wustl.edu	37	2	15378705	15378705	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	15378705	15378705	C	T	SNP	NBAS	NM_015909	human	genbank	57_37b	-1	validated	missense	c.5830	p.A1944T	0.000	NULL	superfamily_WD40 repeat-like,HMMPfam_Sec39,PatternScan_RIBOSOMAL_S14	-	no_errors
NCRNA00152	0	genome.wustl.edu	37	2	87820957	87820964	+	RNA	DEL	TCGGTTTC	TCGGTTTC	-	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	TCGGTTTC	TCGGTTTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	87820957	87820964	TCGGTTTC	-	DEL	NCRNA00152	NR_024204	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.000:0.000:0.000:0.001:0.000:0.000:0.000:0.000	-	-	(deletion:rna[87820726,87821032])	no_errors
NKX1-2	390010	genome.wustl.edu	37	10	126136112	126136112	+	Silent	SNP	A	A	G	rs7075981	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	126136112	126136112	A	G	SNP	NKX1-2	XM_002343017	human	genbank	57_37b	-1	model	silent	c.885	p.N295	0.997	NULL	superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	
NOBOX	135935	genome.wustl.edu	37	7	144096068	144096068	+	Missense_Mutation	SNP	C	C	T	rs2525702	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	144096068	144096068	C	T	SNP	NOBOX	NM_001080413	human	genbank	57_37b	-1	provisional	missense	c.1444	p.G482S	0.385	NULL	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox	-	
NPAT	4863	genome.wustl.edu	37	11	108040720	108040720	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	108040720	108040720	C	T	SNP	NPAT	NM_002519	human	genbank	57_37b	-1	validated	missense	c.2836	p.V946I	1.000	NULL	HMMSmart_SM00667	-	no_errors
NTNG1	22854	genome.wustl.edu	37	1	107963749	107963749	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	107963749	107963749	T	C	SNP	NTNG1	NM_001113228	human	genbank	57_37b	+1	validated	silent	c.1197	p.V399	1.000	NULL	HMMPfam_Laminin_N,HMMSmart_LamNT,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196,PatternScan_EGF_1,HMMSmart_EGF,HMMPfam_EGF_2	-	no_errors
NUAK2	81788	genome.wustl.edu	37	1	205273142	205273142	+	Silent	SNP	G	G	C	rs41264881	byCluster;byFrequency;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	205273142	205273142	G	C	SNP	NUAK2	NM_030952	human	genbank	57_37b	-1	provisional	silent	c.1323	p.P441	0.000	NULL	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	
NUDCD3	23386	genome.wustl.edu	37	7	44444122	44444122	+	Missense_Mutation	SNP	G	G	A	rs11550029	byCluster;byFrequency;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	44444122	44444122	G	A	SNP	NUDCD3	NM_015332	human	genbank	57_37b	-1	reviewed	missense	c.703	p.R235C	0.998	superfamily_HSP20_chap,HMMPfam_CS	superfamily_HSP20_chap,HMMPfam_CS	-	
NUDT21	11051	genome.wustl.edu	37	16	56481707	56481707	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	56481707	56481707	A	C	SNP	NUDT21	NM_007006	human	genbank	57_37b	-1	reviewed	missense	c.311	p.F104C	1.000	HMMPfam_NUDIX	HMMPfam_NUDIX	-	no_errors
NUP98	4928	genome.wustl.edu	37	11	3752719	3752725	+	Frame_Shift_Del	DEL	CCGGACT	CCGGACT	-	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	CCGGACT	CCGGACT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	3752719	3752725	CCGGACT	-	DEL	NUP98	NM_016320	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.1632_1626	p.R542fs	0.695:0.999:0.998:0.666:1.000:1.000:1.000	NULL	superfamily_SSF88633,HMMPfam_Nucleoporin2,superfamily_Peptidase_S59	(deletion:cds_exon[3752621,3752808])	no_errors
OR2G3	81469	genome.wustl.edu	37	1	247768964	247768964	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	247768964	247768964	T	C	SNP	OR2G3	NM_001001914	human	genbank	57_37b	+1	provisional	missense	c.77	p.V26A	0.001	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OR2T10	127069	genome.wustl.edu	37	1	248756246	248756246	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	248756246	248756246	G	T	SNP	OR2T10	NM_001004693	human	genbank	57_37b	-1	provisional	missense	c.824	p.S275Y	0.039	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OR2T34	127068	genome.wustl.edu	37	1	248737771	248737771	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	248737771	248737771	G	T	SNP	OR2T34	NM_001001821	human	genbank	57_37b	-1	provisional	silent	c.288	p.T96	0.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OR4M1	441670	genome.wustl.edu	37	14	20249295	20249295	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	20249295	20249295	G	A	SNP	OR4M1	NM_001005500	human	genbank	57_37b	+1	provisional	missense	c.814	p.V272M	0.349	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OR7D2	162998	genome.wustl.edu	37	19	9297338	9297338	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	9297338	9297338	A	G	SNP	OR7D2	NM_175883	human	genbank	57_37b	+1	provisional	missense	c.881	p.N294S	0.878	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
P4HB	5034	genome.wustl.edu	37	17	79803027	79803027	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	79803027	79803027	T	A	SNP	P4HB	NM_000918	human	genbank	57_37b	-1	reviewed	missense	c.1439	p.D480V	0.966	NULL	superfamily_Thioredoxin-like,HMMPfam_Thioredoxin,PatternScan_THIOREDOXIN_1	-	no_errors
PCDHB16	57717	genome.wustl.edu	37	5	140562836	140562836	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140562836	140562836	C	T	SNP	PCDHB16	NM_020957	human	genbank	57_37b	+1	reviewed	silent	c.702	p.D234	0.381	superfamily_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1	HMMPfam_Cadherin_2,superfamily_Cadherin,PatternScan_CADHERIN_1,HMMSmart_CA,HMMPfam_Cadherin	-	no_errors
PCNXL2	80003	genome.wustl.edu	37	1	233395012	233395012	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	233395012	233395012	G	C	SNP	PCNXL2	NM_014801	human	genbank	57_37b	-1	provisional	missense	c.596	p.A199G	0.050	NULL	PatternScan_DNAJ_1,HMMPfam_Pecanex_C	-	no_errors
PCSK9	255738	genome.wustl.edu	37	1	55505552	55505553	+	In_Frame_Ins	INS	-	-	CTG	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	55505552	55505553	-	CTG	INS	PCSK9	NM_174936	human	genbank	57_37b	+1	reviewed	in_frame_ins	c.42_43	p.18in_frame_insL	0.042:0.086	NULL	superfamily_Protease propeptides/inhibitors,HMMPfam_Inhibitor_I9,superfamily_Subtilisin-like,HMMPfam_Peptidase_S8	-	no_errors
PDE6G	5148	genome.wustl.edu	37	17	79620348	79620348	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	79620348	79620348	G	-	DEL	PDE6G	ENST00000331056	human	ensembl	57_37b	-1	known	frame_shift_del	c.138	p.V47fs	0.000	NULL	HMMPfam_PDE6_gamma	(deletion:cds_exon[79620190,79620394])	no_errors
PDGFRA	5156	genome.wustl.edu	37	4	55156541	55156541	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	55156541	55156541	G	C	SNP	PDGFRA	NM_006206	human	genbank	57_37b	+1	reviewed	missense	c.2942	p.R981P	0.677	NULL	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
PELO	53918	genome.wustl.edu	37	5	52096347	52096347	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	52096347	52096347	G	T	SNP	PELO	NM_015946	human	genbank	57_37b	+1	reviewed	missense	c.119	p.R40L	1.000	HMMPfam_eRF1_1	HMMPfam_eRF1_1,HMMPfam_eRF1_2,superfamily_L30e-like,HMMPfam_eRF1_3	-	no_errors
PGLYRP4	57115	genome.wustl.edu	37	1	153312921	153312921	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	153312921	153312921	G	A	SNP	PGLYRP4	NM_020393	human	genbank	57_37b	-1	validated	silent	c.760	p.L254	0.021	HMMSmart_SM00701,superfamily_N-acetylmuramoyl-L-alanine amidase-like,HMMSmart_SM00644,HMMPfam_Amidase_2	superfamily_N-acetylmuramoyl-L-alanine amidase-like,HMMSmart_SM00701,HMMSmart_SM00644,HMMPfam_Amidase_2	-	no_errors
PHF2	5253	genome.wustl.edu	37	9	96407983	96407983	+	Silent	SNP	C	C	T	rs9695734	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	96407983	96407983	C	T	SNP	PHF2	NM_005392	human	genbank	57_37b	+1	reviewed	silent	c.372	p.T124	0.062	superfamily_SSF51197	superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_SSF51197,HMMSmart_JmjC,HMMPfam_JmjC	-	
PHF21B	112885	genome.wustl.edu	37	22	45312307	45312307	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	45312307	45312307	G	A	SNP	PHF21B	NM_138415	human	genbank	57_37b	-1	validated	silent	c.417	p.L139	0.028	NULL	superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD	-	no_errors
PLBD2	196463	genome.wustl.edu	37	12	113812735	113812735	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	113812735	113812735	A	G	SNP	PLBD2	NM_173542	human	genbank	57_37b	+1	validated	missense	c.782	p.H261R	1.000	HMMPfam_Phospholip_B	HMMPfam_Phospholip_B	-	no_errors
PLCL2	23228	genome.wustl.edu	37	3	17053574	17053574	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	17053574	17053574	G	A	SNP	PLCL2	NM_015184	human	genbank	57_37b	+1	validated	nonsense	c.2358	p.W786*	1.000	NULL	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_SSF47473,HMMPfam_efhand_like,HMMSmart_PLCXc,HMMPfam_PI-PLC-X,superfamily_PLC-like_Pdiesterase_TIM-brl,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-	no_errors
PLCL2	23228	genome.wustl.edu	37	3	17131237	17131249	+	Frame_Shift_Del	DEL	CTTTTGAAATATG	CTTTTGAAATATG	-	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	CTTTTGAAATATG	CTTTTGAAATATG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	17131237	17131249	CTTTTGAAATATG	-	DEL	PLCL2	NM_015184	human	genbank	57_37b	+1	validated	frame_shift_del	c.2839_2851	p.L948fs	1.000:1.000:0.989:0.991:1.000:1.000:1.000:1.000:1.000:1.000:0.999:0.779:1.000	NULL	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_SSF47473,HMMPfam_efhand_like,HMMSmart_PLCXc,HMMPfam_PI-PLC-X,superfamily_PLC-like_Pdiesterase_TIM-brl,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	(deletion:cds_exon[17131225,17131404])	no_errors
PLEC	0	genome.wustl.edu	37	8	144994265	144994265	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	144994265	144994265	G	C	SNP	PLEC	NM_201380	human	genbank	57_37b	-1	reviewed	missense	c.10135	p.P3379A	0.671	NULL	HMMPfam_Plectin,HMMSmart_SM00250,PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_S10_plectin,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_Plakin repeat	-	no_errors
PLEC	0	genome.wustl.edu	37	8	144996029	144996029	+	Missense_Mutation	SNP	A	A	G	rs7833924	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	144996029	144996029	A	G	SNP	PLEC	NM_201380	human	genbank	57_37b	-1	reviewed	missense	c.8371	p.S2791P	0.980	superfamily_Plakin repeat	HMMPfam_Plectin,HMMSmart_SM00250,PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_S10_plectin,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_Plakin repeat	-	
PLEC	0	genome.wustl.edu	37	8	145001588	145001588	+	Missense_Mutation	SNP	C	C	T	rs11136334	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	145001588	145001588	C	T	SNP	PLEC	NM_201380	human	genbank	57_37b	-1	reviewed	missense	c.4157	p.R1386Q	0.791	HMMSmart_SM00150,superfamily_Spectrin repeat	HMMPfam_Plectin,HMMSmart_SM00250,PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_S10_plectin,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_Plakin repeat	-	
PNLIPRP3	119548	genome.wustl.edu	37	10	118236225	118236225	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	118236225	118236225	A	T	SNP	PNLIPRP3	NM_001011709	human	genbank	57_37b	+1	validated	missense	c.1234	p.N412Y	0.836	superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases,PatternScan_LIPASE_SER,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT,PatternScan_HMG_COA_REDUCTASE_1	-	no_errors
POLR1B	84172	genome.wustl.edu	37	2	113321941	113321941	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	113321941	113321941	A	G	SNP	POLR1B	NM_019014	human	genbank	57_37b	+1	validated	splice_site	c.1613-2	e10-2	1.000	-	-	-	no_errors
POLR2A	5430	genome.wustl.edu	37	17	7405859	7405859	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7405859	7405859	C	G	SNP	POLR2A	NM_000937	human	genbank	57_37b	+1	provisional	missense	c.2595	p.I865M	1.000	superfamily_SSF64484,HMMPfam_RNA_pol_Rpb1_5	superfamily_SSF64484,HMMPfam_RNA_pol_Rpb1_1,HMMPfam_RNA_pol_Rpb1_2,HMMPfam_RNA_pol_Rpb1_3,HMMPfam_RNA_pol_Rpb1_4,HMMPfam_RNA_pol_Rpb1_5,HMMPfam_RNA_pol_Rpb1_6,HMMPfam_RNA_pol_Rpb1_7,HMMPfam_RNA_pol_Rpb1_R,PatternScan_RNA_POL_II_REPEAT	-	no_errors
POPDC2	64091	genome.wustl.edu	37	3	119379073	119379073	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	119379073	119379073	C	T	SNP	POPDC2	NM_022135	human	genbank	57_37b	-1	reviewed	silent	c.198	p.L66	0.998	NULL	HMMPfam_Popeye,superfamily_cAMP-binding domain-like	-	no_errors
PPRC1	23082	genome.wustl.edu	37	10	103900729	103900729	+	Missense_Mutation	SNP	G	G	A	rs61731871	byCluster;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	103900729	103900729	G	A	SNP	PPRC1	NM_015062	human	genbank	57_37b	+1	reviewed	missense	c.2464	p.V822I	0.038	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	
PRB4	5545	genome.wustl.edu	37	12	11461466	11461466	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	11461466	11461466	G	C	SNP	PRB4	NM_002723	human	genbank	57_37b	-1	reviewed	missense	c.451	p.Q151E	0.001	NULL	NULL	-	no_errors
PREX2	80243	genome.wustl.edu	37	8	69033276	69033276	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	69033276	69033276	T	A	SNP	PREX2	NM_024870	human	genbank	57_37b	+1	validated	missense	c.3716	p.F1239Y	1.000	NULL	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_DEP,HMMSmart_SM00049,superfamily_PDZ domain-like,HMMSmart_SM00228"	-	no_errors
PTCHD3	374308	genome.wustl.edu	37	10	27703071	27703071	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	27703071	27703071	C	G	SNP	PTCHD3	NM_001034842	human	genbank	57_37b	-1	validated	missense	c.109	p.E37Q	0.002	NULL	HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain	-	no_errors
PTK2	5747	genome.wustl.edu	37	8	141753376	141753376	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	141753376	141753376	C	A	SNP	PTK2	NM_005607	human	genbank	57_37b	-1	reviewed	missense	c.1754	p.G585V	1.000	superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_FERM_2	HMMSmart_B41,superfamily_FERM_3-hlx,HMMPfam_FERM_M,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,PatternScan_FERM_2,HMMPfam_Focal_AT,superfamily_Focal_AT	-	no_errors
PVRL4	81607	genome.wustl.edu	37	1	161046156	161046156	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	161046156	161046156	G	A	SNP	PVRL4	NM_030916	human	genbank	57_37b	-1	validated	silent	c.840	p.Y280	1.000	superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG,HMMPfam_C2-set_2,HMMSmart_IGc2,HMMPfam_ig	-	no_errors
RAI1	10743	genome.wustl.edu	37	17	17696755	17696755	+	Missense_Mutation	SNP	C	C	A	rs11649804	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	17696755	17696755	C	A	SNP	RAI1	NM_030665	human	genbank	57_37b	+1	reviewed	missense	c.493	p.P165T	1.000	NULL	HMMSmart_SM00249	-	
RELN	5649	genome.wustl.edu	37	7	103216144	103216144	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	103216144	103216144	C	A	SNP	RELN	NM_005045	human	genbank	57_37b	-1	reviewed	missense	c.4154	p.R1385I	1.000	NULL	HMMPfam_Reeler,superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Sialidase	-	no_errors
RHOT2	89941	genome.wustl.edu	37	16	718514	718514	+	Silent	SNP	C	C	G	rs7204542	byCluster;by2Hit2Allele;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	718514	718514	C	G	SNP	RHOT2	NM_138769	human	genbank	57_37b	+1	provisional	silent	c.123	p.T41	0.998	HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Miro,HMMSmart_SM00174	HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Miro,HMMSmart_SM00174,superfamily_EF-hand,HMMPfam_EF_assoc_2,PatternScan_EF_HAND_1,HMMPfam_EF_assoc_1	-	
RP1L1	94137	genome.wustl.edu	37	8	10467124	10467124	+	Missense_Mutation	SNP	G	G	C	rs4841399	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	10467124	10467124	G	C	SNP	RP1L1	NM_178857	human	genbank	57_37b	-1	validated	missense	c.4484	p.P1495R	0.000	NULL	superfamily_SSF89837,HMMPfam_DCX,HMMPfam_S-antigen	-	
RSPO1	284654	genome.wustl.edu	37	1	38078565	38078565	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	38078565	38078565	G	T	SNP	RSPO1	NM_001038633	human	genbank	57_37b	-1	reviewed	silent	c.654	p.G218	0.995	NULL	superfamily_Growth factor receptor domain,HMMSmart_SM00261,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1	-	no_errors
SET	6418	genome.wustl.edu	37	9	131453346	131453351	+	Splice_Site	DEL	GTTTTT	GTTTTT	-	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	GTTTTT	GTTTTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	131453346	131453351	GTTTTT	-	DEL	SET	ENST00000372688	human	ensembl	57_37b	+1	known	splice_site_del	c.43+1_43+1	e2+1	0.000:0.000:0.000:0.000:0.000:0.003	-	-	(deletion:intron[131453346,131453448])	no_errors
SFMBT2	57713	genome.wustl.edu	37	10	7318923	7318923	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	7318923	7318923	T	C	SNP	SFMBT2	NM_001029880	human	genbank	57_37b	-1	provisional	silent	c.801	p.E267	0.057	HMMSmart_SM00561	superfamily_Tudor/PWWP/MBT,HMMSmart_SM00561,HMMPfam_MBT,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_2	-	no_errors
SFXN5	94097	genome.wustl.edu	37	2	73215386	73215386	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	73215386	73215386	C	T	SNP	SFXN5	NM_144579	human	genbank	57_37b	-1	validated	splice_site	c.625+1	e10+1	1.000	-	-	-	no_errors
SLC22A11	55867	genome.wustl.edu	37	11	64329814	64329814	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64329814	64329814	C	T	SNP	SLC22A11	NM_018484	human	genbank	57_37b	+1	reviewed	missense	c.728	p.A243V	0.143	superfamily_MFS general substrate transporter,HMMPfam_MFS_1	superfamily_MFS general substrate transporter,HMMPfam_MFS_1	-	no_errors
SLC2A6	11182	genome.wustl.edu	37	9	136338580	136338580	+	Silent	SNP	G	G	A	rs41297217	byCluster;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	136338580	136338580	G	A	SNP	SLC2A6	NM_017585	human	genbank	57_37b	-1	validated	silent	c.1179	p.Y393	1.000	superfamily_MFS_gen_substrate_transporter,HMMPfam_Sugar_tr	superfamily_MFS_gen_substrate_transporter,HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_2,PatternScan_SUGAR_TRANSPORT_1	-	
SLCO4C1	353189	genome.wustl.edu	37	5	101572605	101572605	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	101572605	101572605	A	G	SNP	SLCO4C1	NM_180991	human	genbank	57_37b	-1	validated	missense	c.2132	p.V711A	0.227	NULL	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter,superfamily_SSF100895,HMMPfam_Kazal_2	-	no_errors
SLITRK6	84189	genome.wustl.edu	37	13	86368270	86368270	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	86368270	86368270	C	A	SNP	SLITRK6	NM_032229	human	genbank	57_37b	-1	validated	nonsense	c.2374	p.G792*	0.997	NULL	superfamily_L domain-like,HMMSmart_SM00369,HMMSmart_SM00365,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT	-	no_errors
SMARCA4	6597	genome.wustl.edu	37	19	11170528	11170528	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	11170528	11170528	G	T	SNP	SMARCA4	NM_001128849	human	genbank	57_37b	+1	reviewed	nonsense	c.4831	p.E1611*	1.000	NULL	HMMPfam_QLQ,superfamily_SSF52540,HMMPfam_HSA,HMMSmart_HSA,HMMPfam_BRK,HMMSmart_BRK,HMMSmart_DEXDc,HMMPfam_SNF2_N,HMMSmart_HELICc,HMMPfam_Helicase_C,superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors
SMARCAL1	50485	genome.wustl.edu	37	2	217315787	217315787	+	Silent	SNP	T	T	C	rs2066527	byCluster;byFrequency;bySubmitter;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	217315787	217315787	T	C	SNP	SMARCAL1	NM_001127207	human	genbank	57_37b	+1	reviewed	silent	c.2070	p.T690	0.032	NULL	HMMPfam_HARP,superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_SNF2_N,HMMSmart_HELICc,HMMPfam_Helicase_C	-	
SMG1	23049	genome.wustl.edu	37	16	18869547	18869547	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	18869547	18869547	C	A	SNP	SMG1	NM_015092	human	genbank	57_37b	-1	reviewed	missense	c.4179	p.W1393C	1.000	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_HEAT,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_2,HMMPfam_FATC	-	no_errors
SP4	6671	genome.wustl.edu	37	7	21550872	21550872	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	21550872	21550872	C	T	SNP	SP4	NM_003112	human	genbank	57_37b	+1	validated	silent	c.2340	p.N780	1.000	NULL	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667	-	no_errors
STAB1	23166	genome.wustl.edu	37	3	52555957	52555957	+	Silent	SNP	T	T	C	rs9853056	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	52555957	52555957	T	C	SNP	STAB1	NM_015136	human	genbank	57_37b	+1	reviewed	silent	c.6261	p.R2087	0.000	superfamily_Growth factor receptor domain,HMMSmart_SM00181,PatternScan_EGF_2	superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF_2,HMMSmart_SM00180,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_FAS1 domain,HMMSmart_SM00554,HMMPfam_Fasciclin,PatternScan_CYTOCHROME_P450,HMMSmart_SM00179,HMMPfam_EGF,PatternScan_EGF_LAM_1,HMMPfam_Laminin_EGF,superfamily_Growth factor receptor domain,HMMSmart_SM00445,HMMPfam_Xlink,superfamily_C-type lectin-like,PatternScan_LINK_1	-	
STAT3	6774	genome.wustl.edu	37	17	40468877	40468877	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	40468877	40468877	G	A	SNP	STAT3	NM_139276	human	genbank	57_37b	-1	reviewed	silent	c.2187	p.R729	1.000	NULL	superfamily_Transcription factor STAT-4 N-domain,HMMPfam_STAT_int,superfamily_STAT,HMMPfam_STAT_alpha,HMMPfam_STAT_bind,superfamily_p53-like transcription factors,superfamily_SH2 domain,HMMPfam_SH2	-	no_errors
SYK	6850	genome.wustl.edu	37	9	93607735	93607735	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	93607735	93607735	C	G	SNP	SYK	NM_003177	human	genbank	57_37b	+1	validated	missense	c.437	p.A146G	1.000	superfamily_SH2 domain	superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
TARS	6897	genome.wustl.edu	37	5	33456148	33456148	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	33456148	33456148	T	C	SNP	TARS	NM_152295	human	genbank	57_37b	+1	reviewed	silent	c.735	p.N245	1.000	superfamily_ThrRS/AlaRS common domain	HMMPfam_TGS,superfamily_TGS-like,superfamily_ThrRS/AlaRS common domain,HMMPfam_tRNA_SAD,superfamily_Class II aaRS and biotin synthetases,HMMPfam_tRNA-synt_2b,superfamily_Anticodon-binding domain of Class II aaRS,HMMPfam_HGTP_anticodon	-	no_errors
TAS2R16	50833	genome.wustl.edu	37	7	122635007	122635007	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	122635007	122635007	A	C	SNP	TAS2R16	NM_016945	human	genbank	57_37b	-1	reviewed	missense	c.682	p.S228A	0.044	HMMPfam_TAS2R	HMMPfam_TAS2R	-	no_errors
TBC1D14	57533	genome.wustl.edu	37	4	6956059	6956059	+	Missense_Mutation	SNP	T	T	C	rs11732887	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	6956059	6956059	T	C	SNP	TBC1D14	ENST00000410031	human	ensembl	57_37b	+1	known	missense	c.32	p.M11T	0.101	NULL	superfamily_RabGAP_TBC,HMMSmart_TBC,HMMPfam_TBC	-	
TBP	6908	genome.wustl.edu	37	6	170871016	170871016	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	170871016	170871016	G	A	SNP	TBP	NM_003194	human	genbank	57_37b	+1	reviewed	silent	c.192	p.Q64	1.000	NULL	superfamily_TFIID_C/glycos_N,HMMPfam_TBP,PatternScan_TFIID	-	no_errors
TCF12	6938	genome.wustl.edu	37	15	57545524	57545524	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	57545524	57545524	C	A	SNP	TCF12	NM_207036	human	genbank	57_37b	+1	reviewed	missense	c.1325	p.A442D	1.000	NULL	superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH	-	no_errors
TCHH	7062	genome.wustl.edu	37	1	152083921	152083921	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	152083921	152083921	T	C	SNP	TCHH	NM_007113	human	genbank	57_37b	-1	provisional	missense	c.1772	p.K591R	0.001	NULL	superfamily_SSF47473,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1	-	no_errors
TCIRG1	10312	genome.wustl.edu	37	11	67818248	67818248	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	67818248	67818248	A	C	SNP	TCIRG1	NM_006019	human	genbank	57_37b	+1	reviewed	missense	c.2455	p.K819Q	1.000	HMMPfam_V_ATPase_I	HMMPfam_V_ATPase_I	-	no_errors
TDRKH	11022	genome.wustl.edu	37	1	151747553	151747553	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	151747553	151747553	C	G	SNP	TDRKH	NM_001083963	human	genbank	57_37b	-1	validated	missense	c.1524	p.M508I	0.002	NULL	superfamily_Eukaryotic type KH-domain (KH-domain type I),HMMSmart_SM00322,HMMPfam_KH_1,HMMPfam_TUDOR,superfamily_Tudor/PWWP/MBT,HMMSmart_SM00333	-	no_errors
TECPR2	9895	genome.wustl.edu	37	14	102901119	102901119	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	102901119	102901119	C	G	SNP	TECPR2	NM_014844	human	genbank	57_37b	+1	validated	missense	c.1965	p.S655R	0.000	NULL	PatternScan_WD_REPEATS_1,HMMSmart_WD40,superfamily_WD40_like,HMMSmart_TECPR,HMMPfam_Hyd_WA	-	no_errors
TET1	80312	genome.wustl.edu	37	10	70332118	70332118	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	70332118	70332118	G	A	SNP	TET1	NM_030625	human	genbank	57_37b	+1	validated	missense	c.23	p.R8K	0.980	NULL	HMMPfam_zf-CXXC	-	no_errors
TIGIT	201633	genome.wustl.edu	37	3	114018446	114018446	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	114018446	114018446	G	C	SNP	TIGIT	NM_173799	human	genbank	57_37b	+1	validated	missense	c.394	p.A132P	0.617	NULL	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409	-	no_errors
TRABD	80305	genome.wustl.edu	37	22	50632861	50632861	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	50632861	50632861	G	T	SNP	TRABD	NM_025204	human	genbank	57_37b	+1	provisional	missense	c.205	p.A69S	0.994	NULL	HMMPfam_TraB	-	no_errors
TSEN54	283989	genome.wustl.edu	37	17	73518203	73518203	+	Missense_Mutation	SNP	G	G	C	rs9911502	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	73518203	73518203	G	C	SNP	TSEN54	NM_207346	human	genbank	57_37b	+1	reviewed	missense	c.1041	p.K347N	1.000	NULL	NULL	-	
TTC3	7267	genome.wustl.edu	37	21	38567987	38567987	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	38567987	38567987	G	C	SNP	TTC3	NM_001001894	human	genbank	57_37b	+1	validated	missense	c.5229	p.E1743D	0.000	NULL	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452,superfamily_Spectrin,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4	-	no_errors
TTN	7273	genome.wustl.edu	37	2	179398516	179398516	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	179398516	179398516	G	A	SNP	TTN	ENST00000356127	human	ensembl	57_37b	-1	known	missense	c.95116	p.R31706W	1.000	HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
TTN	7273	genome.wustl.edu	37	2	179437368	179437368	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	179437368	179437368	A	T	SNP	TTN	ENST00000356127	human	ensembl	57_37b	-1	known	nonsense	c.65781	p.Y21927*	0.996	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1	-	no_errors
TTN	7273	genome.wustl.edu	37	2	179441108	179441113	+	In_Frame_Del	DEL	CAGTGA	CAGTGA	-	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	CAGTGA	CAGTGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	179441108	179441113	CAGTGA	-	DEL	TTN	ENST00000356127	human	ensembl	57_37b	-1	known	in_frame_del	c.62041_62036	p.VT20679in_frame_del	1.000:0.504:0.999:1.000:1.000:1.000	HMMSmart_SM00060,HMMPfam_fn3	HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR	(deletion:cds_exon[179424038,179441143])	no_errors
TTYH2	94015	genome.wustl.edu	37	17	72240177	72240177	+	Missense_Mutation	SNP	T	T	G	rs35999669	byCluster;byFrequency;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	72240177	72240177	T	G	SNP	TTYH2	NM_032646	human	genbank	57_37b	+1	reviewed	missense	c.793	p.S265A	0.707	HMMPfam_Tweety	HMMPfam_Tweety	-	
UBE2E1	7324	genome.wustl.edu	37	3	23932006	23932006	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	23932006	23932006	C	G	SNP	UBE2E1	NM_003341	human	genbank	57_37b	+1	reviewed	missense	c.491	p.P164R	1.000	superfamily_UBC-like,HMMSmart_SM00212,HMMPfam_UQ_con	superfamily_UBC-like,HMMSmart_SM00212,HMMPfam_UQ_con,PatternScan_UBIQUITIN_CONJUGAT_1	-	no_errors
UBR4	23352	genome.wustl.edu	37	1	19464664	19464664	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	19464664	19464664	T	G	SNP	UBR4	NM_020765	human	genbank	57_37b	-1	validated	missense	c.8743	p.S2915R	1.000	NULL	superfamily_ARM repeat,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-UBR,HMMSmart_SM00396,PatternScan_ASP_GLU_RACEMASE_1	-	no_errors
UBR5	51366	genome.wustl.edu	37	8	103299695	103299695	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	103299695	103299695	G	A	SNP	UBR5	NM_015902	human	genbank	57_37b	-1	reviewed	silent	c.4923	p.S1641	1.000	NULL	HMMPfam_zf-UBR,HMMSmart_ZnF_UBR1,superfamily_HECT,superfamily_PABP_HYD,HMMPfam_PABP,HMMSmart_PolyA,HMMSmart_HECTc,HMMPfam_HECT	-	no_errors
UCHL5	51377	genome.wustl.edu	37	1	192998533	192998533	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	192998533	192998533	T	C	SNP	UCHL5	NM_015984	human	genbank	57_37b	-1	validated	missense	c.419	p.H140R	1.000	HMMPfam_Peptidase_C12,superfamily_Cysteine proteinases	HMMPfam_Peptidase_C12,superfamily_Cysteine proteinases	-	no_errors
UGT2B15	7366	genome.wustl.edu	37	4	69519794	69519794	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	69519794	69519794	T	C	SNP	UGT2B15	NM_001076	human	genbank	57_37b	-1	validated	missense	c.1274	p.D425G	0.980	superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT	superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT,PatternScan_UDPGT	-	no_errors
UNC5D	137970	genome.wustl.edu	37	8	35541224	35541224	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	35541224	35541224	T	A	SNP	UNC5D	NM_080872	human	genbank	57_37b	+1	validated	missense	c.730	p.S244T	1.000	HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,PatternScan_SERPIN,HMMPfam_ZU5,HMMSmart_SM00218,superfamily_DEATH domain,HMMSmart_SM00005,HMMPfam_Death	-	no_errors
USP25	29761	genome.wustl.edu	37	21	17205712	17205712	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	17205712	17205712	C	A	SNP	USP25	NM_013396	human	genbank	57_37b	+1	validated	missense	c.2039	p.T680K	1.000	NULL	superfamily_UBA-like,HMMPfam_UIM,HMMSmart_SM00726,superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors
VASN	114990	genome.wustl.edu	37	16	4431912	4431912	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	4431912	4431912	C	A	SNP	VASN	NM_138440	human	genbank	57_37b	+1	validated	missense	c.1034	p.A345D	0.921	HMMSmart_LRRCT	HMMPfam_LRRNT,HMMSmart_LRRNT,superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMSmart_LRRCT,superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_FN_III-like,HMMPfam_fn3,HMMSmart_FN3	-	no_errors
WDR11	55717	genome.wustl.edu	37	10	122646224	122646234	+	Frame_Shift_Del	DEL	AATCTGAACTT	AATCTGAACTT	-	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	AATCTGAACTT	AATCTGAACTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	122646224	122646234	AATCTGAACTT	-	DEL	WDR11	NM_018117	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1997_2007	p.L669fs	1.000:1.000:1.000:1.000:0.751:1.000:1.000:1.000:1.000:1.000:0.996	superfamily_WD40_like	superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1	(deletion:cds_exon[122646201,122646348])	no_errors
WDR81	124997	genome.wustl.edu	37	17	1634104	1634104	+	Silent	SNP	C	C	T	rs12150338	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	1634104	1634104	C	T	SNP	WDR81	ENST00000409644	human	ensembl	57_37b	+1	known	silent	c.3831	p.A1277	0.002	superfamily_WD40 repeat-like	superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,PatternScan_FBPASE,HMMSmart_SM00320,HMMPfam_WD40	-	
WNT7A	7476	genome.wustl.edu	37	3	13896284	13896284	+	Silent	SNP	C	C	T	rs12639607	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	13896284	13896284	C	T	SNP	WNT7A	NM_004625	human	genbank	57_37b	-1	reviewed	silent	c.315	p.A105	0.915	HMMPfam_wnt,HMMSmart_SM00097	HMMPfam_wnt,HMMSmart_SM00097,PatternScan_WNT1	-	
XIRP1	165904	genome.wustl.edu	37	3	39229254	39229254	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	39229254	39229254	C	T	SNP	XIRP1	NM_194293	human	genbank	57_37b	-1	provisional	missense	c.1683	p.M561I	0.792	NULL	HMMPfam_Xin	-	no_errors
ZFP92	139735	genome.wustl.edu	37	X	152686529	152686529	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	152686529	152686529	G	A	SNP	ZFP92	NM_001136273	human	genbank	57_37b	+1	validated	missense	c.694	p.G232S	0.022	superfamily_SSF57667	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF101	94039	genome.wustl.edu	37	19	19790274	19790274	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	19790274	19790274	G	A	SNP	ZNF101	NM_033204	human	genbank	57_37b	+1	provisional	missense	c.476	p.R159H	0.935	NULL	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2	-	no_errors
ZNF318	24149	genome.wustl.edu	37	6	43323219	43323219	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	43323219	43323219	C	T	SNP	ZNF318	NM_014345	human	genbank	57_37b	-1	validated	missense	c.1853	p.R618Q	1.000	NULL	HMMSmart_SM00451,superfamily_C2H2 and C2HC zinc fingers,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF394	84124	genome.wustl.edu	37	7	99097679	99097679	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	99097679	99097679	T	C	SNP	ZNF394	NM_032164	human	genbank	57_37b	-1	provisional	missense	c.38	p.D13G	0.012	NULL	HMMPfam_SCAN,HMMSmart_SM00431,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF434	54925	genome.wustl.edu	37	16	3433091	3433091	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	3433091	3433091	G	C	SNP	ZNF434	NM_017810	human	genbank	57_37b	-1	provisional	missense	c.1219	p.Q407E	0.001	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF438	220929	genome.wustl.edu	37	10	31139084	31139084	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	31139084	31139084	G	A	SNP	ZNF438	NM_001143766	human	genbank	57_37b	-1	validated	nonsense	c.250	p.Q84*	1.000	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors
ZNF528	84436	genome.wustl.edu	37	19	52918378	52918378	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	52918378	52918378	G	C	SNP	ZNF528	NM_032423	human	genbank	57_37b	+1	validated	missense	c.273	p.E91D	0.021	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF560	147741	genome.wustl.edu	37	19	9578743	9578743	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	9578743	9578743	C	A	SNP	ZNF560	NM_152476	human	genbank	57_37b	-1	validated	missense	c.880	p.G294C	0.048	NULL	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF81	347344	genome.wustl.edu	37	X	47774342	47774342	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	47774342	47774342	G	C	SNP	ZNF81	NM_007137	human	genbank	57_37b	+1	validated	missense	c.297	p.K99N	0.112	NULL	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF827	152485	genome.wustl.edu	37	4	146791465	146791465	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	146791465	146791465	C	T	SNP	ZNF827	NM_178835	human	genbank	57_37b	-1	validated	missense	c.1913	p.G638E	0.999	NULL	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF862	0	genome.wustl.edu	37	7	149559465	149559465	+	Silent	SNP	C	C	T	rs2074701	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	149559465	149559465	C	T	SNP	ZNF862	NM_001099220	human	genbank	57_37b	+1	provisional	silent	c.3216	p.G1072	0.047	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,HMMSmart_SM00597,HMMPfam_hATC	-	
ZNRF1	84937	genome.wustl.edu	37	16	75138732	75138732	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	75138732	75138732	C	G	SNP	ZNRF1	NM_032268	human	genbank	57_37b	+1	reviewed	missense	c.571	p.L191V	1.000	superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184	superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184	-	no_errors
ZNRF4	148066	genome.wustl.edu	37	19	5455796	5455796	+	Silent	SNP	A	A	G	rs420325	byCluster;byFrequency;bySubmitter;by2Hit2Allele;by1000genomes	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	5455796	5455796	A	G	SNP	ZNRF4	NM_181710	human	genbank	57_37b	+1	validated	silent	c.294	p.A98	0.006	superfamily_Transferrin receptor ectodomain apical domain	superfamily_Transferrin receptor ectodomain apical domain,HMMPfam_PA,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_EGF_2	-	
ZP2	7783	genome.wustl.edu	37	16	21212763	21212763	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0T0-01A-22D-A099-09	TCGA-A2-A0T0-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	21212763	21212763	C	G	SNP	ZP2	NM_003460	human	genbank	57_37b	-1	reviewed	missense	c.1621	p.V541L	1.000	HMMPfam_Zona_pellucida,HMMSmart_SM00241,PatternScan_ZP_1	HMMPfam_Zona_pellucida,HMMSmart_SM00241,PatternScan_ZP_1	-	no_errors
