Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ACADVL	37	genome.wustl.edu	37	17	7123807	7123807	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7123807	7123807	C	T	SNP	ACADVL	NM_000018	human	genbank	57_37b	+1	reviewed	missense	c.163	p.H55Y	0.000	NULL	superfamily_Acyl-CoA dehydrogenase NM domain-like,HMMPfam_Acyl-CoA_dh_N,HMMPfam_Acyl-CoA_dh_M,PatternScan_ACYL_COA_DH_1,HMMPfam_Acyl-CoA_dh_1,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like,PatternScan_ACYL_COA_DH_2	-	no_errors
ANKRD34A	284615	genome.wustl.edu	37	1	145473724	145473724	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	145473724	145473724	C	T	SNP	ANKRD34A	NM_001039888	human	genbank	57_37b	+1	validated	silent	c.396	p.D132	0.307	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	HMMSmart_SM00248,HMMPfam_Ank,superfamily_Ankyrin repeat	-	no_errors
BACH2	60468	genome.wustl.edu	37	6	90642332	90642332	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	90642332	90642332	G	A	SNP	BACH2	NM_021813	human	genbank	57_37b	-1	validated	missense	c.2321	p.A774V	0.018	NULL	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,superfamily_Euk_transcr_DNA,HMMSmart_BRLZ,PatternScan_BZIP_BASIC,HMMPfam_bZIP_1	-	no_errors
BLM	641	genome.wustl.edu	37	15	91304296	91304296	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	91304296	91304296	G	A	SNP	BLM	NM_000057	human	genbank	57_37b	+1	reviewed	missense	c.1693	p.D565N	1.000	NULL	HMMPfam_BDHCT,superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_DEAD,PatternScan_DEAH_ATP_HELICASE,HMMSmart_HELICc,HMMPfam_Helicase_C,HMMPfam_RQC,superfamily_HRDC_like,HMMSmart_HRDC,HMMPfam_HRDC	-	no_errors
BLM	641	genome.wustl.edu	37	15	91304368	91304368	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	91304368	91304368	G	T	SNP	BLM	NM_000057	human	genbank	57_37b	+1	reviewed	nonsense	c.1765	p.E589*	1.000	NULL	HMMPfam_Helicase_C,HMMSmart_HELICc,HMMPfam_HRDC,HMMSmart_HRDC,PatternScan_DEAH_ATP_HELICASE,superfamily_HRDC_like,HMMPfam_DEAD,HMMPfam_BDHCT,HMMSmart_DEXDc,HMMPfam_RQC,superfamily_SSF52540	-	no_errors
C7orf65	0	genome.wustl.edu	37	7	47694923	47694923	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	47694923	47694923	C	T	SNP	C7orf65	NM_001123065	human	genbank	57_37b	+1	validated	missense	c.47	p.P16L	0.003	NULL	NULL	-	no_errors
CCDC155	147872	genome.wustl.edu	37	19	49897775	49897775	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	49897775	49897775	C	T	SNP	CCDC155	NM_144688	human	genbank	57_37b	+1	provisional	missense	c.86	p.P29L	0.052	NULL	NULL	-	no_errors
CCNG2	901	genome.wustl.edu	37	4	78081937	78081939	+	In_Frame_Del	DEL	GAA	GAA	-	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	GAA	GAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	78081937	78081939	GAA	-	DEL	CCNG2	NM_004354	human	genbank	57_37b	+1	reviewed	in_frame_del	c.340_342	p.E115in_frame_del	1.000:1.000:1.000	superfamily_Cyclin-like,HMMSmart_SM00385,HMMPfam_Cyclin_N	superfamily_Cyclin-like,HMMSmart_SM00385,HMMPfam_Cyclin_N	(deletion:cds_exon[78081874,78082124])	no_errors
CECR5	27440	genome.wustl.edu	37	22	17630576	17630576	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	17630576	17630576	T	G	SNP	CECR5	NM_033070	human	genbank	57_37b	-1	validated	missense	c.186	p.R62S	0.012	superfamily_HAD-like	superfamily_HAD-like	-	no_errors
CHCHD9	645345	genome.wustl.edu	37	9	82006369	82006369	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	82006369	82006369	C	T	SNP	CHCHD9	ENST00000338392	human	ensembl	57_37b	+1	known	missense	c.151	p.R51W	0.997	NULL	HMMPfam_CHCH	-	no_errors
CST3	1471	genome.wustl.edu	37	20	23614578	23614578	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	23614578	23614578	G	A	SNP	CST3	NM_000099	human	genbank	57_37b	-1	reviewed	missense	c.416	p.S139L	0.000	HMMSmart_CY,superfamily_SSF54403	HMMSmart_CY,HMMPfam_Cystatin,superfamily_SSF54403,PatternScan_CYSTATIN	-	no_errors
CTR9	9646	genome.wustl.edu	37	11	10791787	10791787	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	10791787	10791787	C	G	SNP	CTR9	NM_014633	human	genbank	57_37b	+1	provisional	missense	c.2140	p.H714D	1.000	superfamily_SSF48452,HMMSmart_TPR	superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR	-	no_errors
CYP4F12	66002	genome.wustl.edu	37	19	15794459	15794459	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	15794459	15794459	C	T	SNP	CYP4F12	NM_023944	human	genbank	57_37b	+1	reviewed	silent	c.804	p.D268	0.019	superfamily_Cytochrome P450,HMMPfam_p450	superfamily_Cytochrome P450,HMMPfam_p450,PatternScan_CYTOCHROME_P450	-	no_errors
DNAH5	1767	genome.wustl.edu	37	5	13719037	13719037	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	13719037	13719037	G	A	SNP	DNAH5	NM_001369	human	genbank	57_37b	-1	reviewed	silent	c.12453	p.N4151	0.905	HMMPfam_Dynein_heavy	HMMPfam_DHC_N1,superfamily_Spectrin,HMMPfam_DHC_N2,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-	no_errors
DNAH6	0	genome.wustl.edu	37	2	84800662	84800662	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	84800662	84800662	C	-	DEL	DNAH6	NM_001370	human	genbank	57_37b	+1	validated	frame_shift_del	c.1875	p.F625fs	0.997	NULL	HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	(deletion:cds_exon[84800591,84800711])	no_errors
DYNC2H1	79659	genome.wustl.edu	37	11	103126208	103126208	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	103126208	103126208	A	-	DEL	DYNC2H1	NM_001080463	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.10292	p.Q3431fs	1.000	NULL	HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	(deletion:cds_exon[103126144,103126263])	no_errors
ENSG00000246861	0	genome.wustl.edu	37	20	17924010	17924010	+	RNA	SNP	C	C	A	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	17924010	17924010	C	A	SNP	ENSG00000246861	ENST00000499129	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors
FAIM2	23017	genome.wustl.edu	37	12	50291851	50291851	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	50291851	50291851	G	A	SNP	FAIM2	NM_012306	human	genbank	57_37b	-1	validated	silent	c.234	p.N78	0.000	NULL	HMMPfam_UPF0005	-	no_errors
FAM58A	92002	genome.wustl.edu	37	X	152860004	152860004	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	152860004	152860004	C	A	SNP	FAM58A	ENST00000276345	human	ensembl	57_37b	-1	known	splice_site	c.423+1	e3+1	1.000	-	-	-	no_errors
FGD5	152273	genome.wustl.edu	37	3	14862541	14862541	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	14862541	14862541	C	T	SNP	FGD5	NM_152536	human	genbank	57_37b	+1	validated	missense	c.1963	p.R655C	0.977	NULL	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger,PatternScan_C_TYPE_LECTIN_1	-	no_errors
FLT3	2322	genome.wustl.edu	37	13	28588649	28588649	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	28588649	28588649	C	T	SNP	FLT3	NM_004119	human	genbank	57_37b	-1	reviewed	silent	c.2799	p.R933	0.805	superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc	superfamily_SSF48726,HMMPfam_ig,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
GPATCH1	55094	genome.wustl.edu	37	19	33587282	33587282	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	33587282	33587282	G	C	SNP	GPATCH1	NM_018025	human	genbank	57_37b	+1	provisional	missense	c.782	p.G261A	0.000	NULL	HMMPfam_DUF1604,HMMSmart_G_patch,HMMPfam_G-patch	-	no_errors
GTSE1	51512	genome.wustl.edu	37	22	46712099	46712099	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	46712099	46712099	G	C	SNP	GTSE1	NM_016426	human	genbank	57_37b	+1	reviewed	missense	c.1222	p.E408Q	0.004	NULL	NULL	-	no_errors
GTSE1	51512	genome.wustl.edu	37	22	46712226	46712226	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	46712226	46712226	G	A	SNP	GTSE1	NM_016426	human	genbank	57_37b	+1	reviewed	missense	c.1349	p.R450K	0.000	NULL	NULL	-	no_errors
GYG2	8908	genome.wustl.edu	37	X	2773101	2773101	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	2773101	2773101	C	T	SNP	GYG2	NM_003918	human	genbank	57_37b	+1	validated	missense	c.485	p.P162L	0.998	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glyco_transf_8	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glyco_transf_8	-	no_errors
HAO1	54363	genome.wustl.edu	37	20	7915232	7915232	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	7915232	7915232	G	A	SNP	HAO1	NM_017545	human	genbank	57_37b	-1	reviewed	missense	c.188	p.S63L	1.000	superfamily_FMN-linked oxidoreductases,HMMPfam_FMN_dh	superfamily_FMN-linked oxidoreductases,HMMPfam_FMN_dh,PatternScan_FMN_HYDROXY_ACID_DH_1	-	no_errors
KCNH1	3756	genome.wustl.edu	37	1	210948781	210948781	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	210948781	210948781	C	T	SNP	KCNH1	NM_172362	human	genbank	57_37b	-1	reviewed	missense	c.2021	p.R674Q	1.000	superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding	superfamily_PYP-like sensor domain (PAS domain),HMMSmart_SM00086,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding	-	no_errors
KDM4A	9682	genome.wustl.edu	37	1	44133570	44133570	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	44133570	44133570	C	T	SNP	KDM4A	NM_014663	human	genbank	57_37b	+1	reviewed	missense	c.1043	p.P348L	1.000	NULL	HMMSmart_SM00545,HMMPfam_JmjN,HMMSmart_SM00558,HMMPfam_JmjC,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,HMMPfam_PHD,HMMSmart_SM00333,superfamily_Tudor/PWWP/MBT	-	no_errors
KIF27	55582	genome.wustl.edu	37	9	86482718	86482718	+	Missense_Mutation	SNP	G	G	A	rs3199677	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	86482718	86482718	G	A	SNP	KIF27	NM_017576	human	genbank	57_37b	-1	provisional	missense	c.2815	p.R939C	1.000	NULL	HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1	-	
KRT15	3866	genome.wustl.edu	37	17	39673185	39673185	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	39673185	39673185	C	T	SNP	KRT15	NM_002275	human	genbank	57_37b	-1	reviewed	missense	c.613	p.V205I	1.000	HMMPfam_Filament	HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF	-	no_errors
LARP4B	23185	genome.wustl.edu	37	10	876875	876875	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	876875	876875	T	-	DEL	LARP4B	NM_015155	human	genbank	57_37b	-1	provisional	frame_shift_del	c.793	p.I265fs	0.998	NULL	"superfamily_""Winged helix"" DNA-binding domain,HMMSmart_SM00715,HMMPfam_La"	(deletion:cds_exon[876807,876917])	no_errors
LARP4B	23185	genome.wustl.edu	37	10	876876	876876	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	876876	876876	A	C	SNP	LARP4B	NM_015155	human	genbank	57_37b	-1	provisional	missense	c.792	p.F264L	0.979	NULL	"superfamily_""Winged helix"" DNA-binding domain,HMMSmart_SM00715,HMMPfam_La"	-	no_errors
LOC440577	440577	genome.wustl.edu	37	1	27533909	27533909	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	27533909	27533909	T	A	SNP	LOC440577	XM_496355	human	genbank	57_37b	+1	model	missense	c.477	p.D159E	0.977	HMMPfam_Nucleoplasmin	HMMPfam_Nucleoplasmin,superfamily_Nucleoplasmin-like core domain	-	no_errors
MAST4	23227	genome.wustl.edu	37	5	66461473	66461473	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	66461473	66461473	A	C	SNP	MAST4	NM_015183	human	genbank	57_37b	+1	validated	missense	c.5899	p.S1967R	0.005	NULL	HMMPfam_DUF1908,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C,superfamily_PDZ,HMMSmart_PDZ,HMMPfam_PDZ	-	no_errors
MFSD4	148808	genome.wustl.edu	37	1	205568262	205568262	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	205568262	205568262	T	C	SNP	MFSD4	NM_181644	human	genbank	57_37b	+1	validated	missense	c.1372	p.F458L	0.934	superfamily_MFS_gen_substrate_transporter	superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1	-	no_errors
MIR133B	0	genome.wustl.edu	37	6	52013759	52013759	+	RNA	SNP	C	C	T	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	52013759	52013759	C	T	SNP	MIR133B	ENST00000362210	human	ensembl	57_37b	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors
MST1P9	0	genome.wustl.edu	37	1	17086183	17086183	+	Splice_Site	SNP	T	T	G	rs61769735	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	17086183	17086183	T	G	SNP	MST1P9	ENST00000455405	human	ensembl	57_37b	-1	known	splice_site	c.716-2	e7-2	0.997	-	-	-	
NWD1	284434	genome.wustl.edu	37	19	16902312	16902312	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	16902312	16902312	C	T	SNP	NWD1	NM_001007525	human	genbank	57_37b	+1	validated	missense	c.2687	p.T896M	0.038	superfamily_WD40 repeat-like	superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
OR9Q1	219956	genome.wustl.edu	37	11	57947558	57947558	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	57947558	57947558	C	A	SNP	OR9Q1	NM_001005212	human	genbank	57_37b	+1	validated	silent	c.642	p.I214	0.002	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OTC	5009	genome.wustl.edu	37	X	38212026	38212026	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	38212026	38212026	G	A	SNP	OTC	NM_000531	human	genbank	57_37b	+1	reviewed	missense	c.77	p.R26Q	0.992	NULL	superfamily_Aspartate/ornithine carbamoyltransferase,HMMPfam_OTCace_N,PatternScan_CARBAMOYLTRANSFERASE,HMMPfam_OTCace	-	no_errors
PCDHA1	56147	genome.wustl.edu	37	5	140167380	140167380	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140167380	140167380	G	A	SNP	PCDHA1	NM_018900	human	genbank	57_37b	+1	reviewed	missense	c.1505	p.R502H	0.819	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
PCDHA13	56136	genome.wustl.edu	37	5	140263380	140263380	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140263380	140263380	G	A	SNP	PCDHA13	NM_018904	human	genbank	57_37b	+1	reviewed	silent	c.1527	p.S509	0.870	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
PCDHB8	56128	genome.wustl.edu	37	5	140559119	140559119	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140559119	140559119	G	A	SNP	PCDHB8	NM_019120	human	genbank	57_37b	+1	reviewed	missense	c.1504	p.A502T	0.588	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	HMMPfam_Cadherin_2,superfamily_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
PI4K2B	55300	genome.wustl.edu	37	4	25256819	25256819	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	25256819	25256819	T	C	SNP	PI4K2B	NM_018323	human	genbank	57_37b	+1	validated	missense	c.556	p.Y186H	1.000	HMMPfam_PI3_PI4_kinase	PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,HMMPfam_PI3_PI4_kinase	-	no_errors
PIK3R6	146850	genome.wustl.edu	37	17	8726792	8726792	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	8726792	8726792	C	T	SNP	PIK3R6	ENST00000311434	human	ensembl	57_37b	-1	known	missense	c.1538	p.R513Q	0.000	HMMPfam_PI3K_1B_p101	HMMPfam_PI3K_1B_p101	-	no_errors
PON1	5444	genome.wustl.edu	37	7	94944672	94944672	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	94944672	94944672	G	T	SNP	PON1	NM_000446	human	genbank	57_37b	-1	reviewed	nonsense	c.332	p.S111*	1.000	superfamily_Calcium-dependent phosphotriesterase	superfamily_Calcium-dependent phosphotriesterase,HMMPfam_Arylesterase	-	no_errors
PROKR1	10887	genome.wustl.edu	37	2	68882405	68882405	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	68882405	68882405	C	T	SNP	PROKR1	NM_138964	human	genbank	57_37b	+1	validated	silent	c.879	p.Y293	1.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
PRR5	55615	genome.wustl.edu	37	22	45075701	45075701	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	45075701	45075701	C	A	SNP	PRR5	ENST00000396141	human	ensembl	57_37b	+1	known	missense	c.22	p.Q8K	0.008	NULL	HMMPfam_HbrB	-	no_errors
PTEN	5728	genome.wustl.edu	37	10	89720707	89720714	+	Frame_Shift_Del	DEL	CTCAGAAA	CTCAGAAA	-	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	CTCAGAAA	CTCAGAAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	89720707	89720714	CTCAGAAA	-	DEL	PTEN	ENST00000371953	human	ensembl	57_37b	+1	known	frame_shift_del	c.858_865	p.E288fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	HMMPfam_PTEN_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,HMMPfam_DSPc,HMMPfam_PTEN_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	(deletion:cds_exon[89720651,89720875])	no_errors
RDH12	145226	genome.wustl.edu	37	14	68192813	68192813	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	68192813	68192813	T	C	SNP	RDH12	NM_152443	human	genbank	57_37b	+1	reviewed	missense	c.389	p.M130T	1.000	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short	-	no_errors
SEMG2	6407	genome.wustl.edu	37	20	43851148	43851148	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	43851148	43851148	G	A	SNP	SEMG2	NM_003008	human	genbank	57_37b	+1	reviewed	missense	c.875	p.R292H	0.000	HMMPfam_Semenogelin	HMMPfam_Semenogelin	-	no_errors
SLC6A14	11254	genome.wustl.edu	37	X	115584214	115584214	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	115584214	115584214	G	T	SNP	SLC6A14	NM_007231	human	genbank	57_37b	+1	validated	missense	c.1192	p.A398S	1.000	HMMPfam_SNF	HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2	-	no_errors
SLC7A3	84889	genome.wustl.edu	37	X	70145947	70145947	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	70145947	70145947	C	A	SNP	SLC7A3	NM_001048164	human	genbank	57_37b	-1	validated	missense	c.1702	p.A568S	0.999	NULL	HMMPfam_AA_permease	-	no_errors
SMOX	54498	genome.wustl.edu	37	20	4163035	4163035	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	4163035	4163035	C	A	SNP	SMOX	NM_175839	human	genbank	57_37b	+1	reviewed	silent	c.909	p.G303	0.000	superfamily_FAD/NAD(P)-binding domain,HMMPfam_Amino_oxidase	superfamily_FAD/NAD(P)-binding domain,HMMPfam_Amino_oxidase,superfamily_FAD-linked reductases C-terminal domain	-	no_errors
STAT5A	6776	genome.wustl.edu	37	17	40451780	40451780	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	40451780	40451780	C	T	SNP	STAT5A	NM_003152	human	genbank	57_37b	+1	reviewed	nonsense	c.562	p.Q188*	1.000	superfamily_STAT,HMMPfam_STAT_alpha	superfamily_STAT,HMMPfam_STAT_int,HMMPfam_STAT_alpha,HMMPfam_STAT_bind,superfamily_P53_like_DNA_bnd,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2	-	no_errors
TBL1X	6907	genome.wustl.edu	37	X	9661244	9661244	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	9661244	9661244	C	T	SNP	TBL1X	NM_001139466	human	genbank	57_37b	+1	reviewed	missense	c.947	p.T316M	1.000	HMMSmart_SM00320,HMMPfam_WD40,superfamily_WD40 repeat-like	HMMSmart_SM00667,HMMPfam_LisH,HMMSmart_SM00320,HMMPfam_WD40,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1	-	no_errors
TBX3	6926	genome.wustl.edu	37	12	115118704	115118706	+	In_Frame_Del	DEL	TGT	TGT	-	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	TGT	TGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	115118704	115118706	TGT	-	DEL	TBX3	NM_016569	human	genbank	57_37b	-1	reviewed	in_frame_del	c.637_635	p.N212in_frame_del	1.000:1.000:1.000	superfamily_p53-like transcription factors,HMMSmart_SM00425,HMMPfam_T-box	superfamily_p53-like transcription factors,HMMSmart_SM00425,HMMPfam_T-box,PatternScan_TBOX_1,PatternScan_TBOX_2	(deletion:cds_exon[115118684,115118951])	no_errors
TCEB3	6924	genome.wustl.edu	37	1	24082459	24082459	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	24082459	24082459	C	T	SNP	TCEB3	NM_003198	human	genbank	57_37b	+1	reviewed	missense	c.1996	p.R666W	1.000	HMMPfam_Elongin_A	superfamily_Conserved domain common to transcription factors TFIIS elongin A CRSP70,HMMPfam_TFIIS,HMMSmart_SM00509,HMMPfam_Elongin_A	-	no_errors
TIMELESS	8914	genome.wustl.edu	37	12	56817240	56817240	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	56817240	56817240	C	T	SNP	TIMELESS	NM_003920	human	genbank	57_37b	-1	validated	missense	c.2110	p.V704I	0.650	NULL	HMMPfam_TIMELESS,HMMPfam_TIMELESS_C	-	no_errors
TNS4	84951	genome.wustl.edu	37	17	38645003	38645003	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	38645003	38645003	C	A	SNP	TNS4	NM_032865	human	genbank	57_37b	-1	validated	missense	c.658	p.G220C	0.000	NULL	superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,superfamily_SSF50729,HMMPfam_PTB	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7577102	7577102	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7577102	7577102	C	T	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.836	p.G279E	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
TPRG1	285386	genome.wustl.edu	37	3	188925244	188925244	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	188925244	188925244	C	T	SNP	TPRG1	NM_198485	human	genbank	57_37b	+1	validated	missense	c.71	p.S24F	0.922	NULL	NULL	-	no_errors
UBE2CBP	90025	genome.wustl.edu	37	6	83767586	83767586	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	83767586	83767586	C	T	SNP	UBE2CBP	NM_198920	human	genbank	57_37b	-1	provisional	missense	c.233	p.G78E	0.984	HMMPfam_DUF2351	HMMPfam_DUF2351	-	no_errors
ZNF292	23036	genome.wustl.edu	37	6	87969506	87969507	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	87969506	87969507	AG	-	DEL	ZNF292	NM_015021	human	genbank	57_37b	+1	validated	frame_shift_del	c.6159_6160	p.E2054fs	0.961:1.000	NULL	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	(deletion:cds_exon[87964368,87971519])	no_errors
ZNF571	51276	genome.wustl.edu	37	19	38055754	38055754	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	38055754	38055754	C	A	SNP	ZNF571	NM_016536	human	genbank	57_37b	-1	validated	missense	c.1576	p.G526C	0.984	superfamily_SSF57667	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF649	65251	genome.wustl.edu	37	19	52395062	52395062	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A06O-01A-11W-A019-09	TCGA-A8-A06O-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	52395062	52395062	T	G	SNP	ZNF649	NM_023074	human	genbank	57_37b	-1	provisional	missense	c.327	p.R109S	0.206	NULL	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
